AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene79698

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene79698.t1 MTR_8g028435 95.402 174 8 0 1 174 1 174 8.08e-123 351
MS.gene79698.t1 MTR_8g009160 85.227 176 26 0 1 176 1 176 1.08e-109 317
MS.gene79698.t1 MTR_8g009090 83.333 174 29 0 1 174 1 174 1.21e-107 312
MS.gene79698.t1 MTR_8g008930 82.857 175 29 1 1 174 1 175 1.58e-107 312
MS.gene79698.t1 MTR_8g009110 84.571 175 26 1 1 174 1 175 8.32e-107 310
MS.gene79698.t1 MTR_8g009150 83.429 175 28 1 1 174 1 175 3.45e-104 303
MS.gene79698.t1 MTR_8g009120 83.908 174 27 1 1 173 1 174 2.82e-103 301
MS.gene79698.t1 MTR_8g009170 82.286 175 30 1 1 174 1 175 7.33e-102 295
MS.gene79698.t1 MTR_8g009170 82.286 175 30 1 1 174 1 175 3.43e-101 296
MS.gene79698.t1 MTR_4g117880 77.143 175 39 1 1 174 1 175 3.53e-98 288
MS.gene79698.t1 MTR_2g069090 71.779 163 42 2 15 174 20 181 4.18e-80 242
MS.gene79698.t1 MTR_2g069210 65.363 179 57 3 2 177 4 180 1.71e-79 241
MS.gene79698.t1 MTR_2g069190 68.098 163 48 2 15 174 20 181 8.11e-77 234
MS.gene79698.t1 MTR_2g069300 65.031 163 53 2 15 174 6 167 2.96e-74 227
MS.gene79698.t1 MTR_8g009080 59.877 162 61 3 16 174 47 207 3.46e-65 203
MS.gene79698.t1 MTR_8g009080 59.877 162 61 3 16 174 47 207 6.90e-65 202
MS.gene79698.t1 MTR_8g009080 59.877 162 61 3 16 174 47 207 3.02e-64 202
MS.gene79698.t1 MTR_1g043770 57.325 157 64 3 19 174 11 165 3.28e-61 194
MS.gene79698.t1 MTR_1g043770 57.325 157 64 3 19 174 11 165 3.45e-61 192
MS.gene79698.t1 MTR_1g043760 54.321 162 70 3 15 174 7 166 4.17e-60 191
MS.gene79698.t1 MTR_1g043775 53.939 165 71 4 15 176 7 169 8.01e-58 183
MS.gene79698.t1 MTR_1g044105 52.096 167 70 4 15 173 7 171 1.21e-57 179
MS.gene79698.t1 MTR_1g043775 53.939 165 71 4 15 176 7 169 1.76e-57 184
MS.gene79698.t1 MTR_1g043810 51.515 165 75 4 15 176 7 169 3.62e-55 177
MS.gene79698.t1 MTR_1g043810 51.515 165 75 4 15 176 7 169 5.66e-55 177
MS.gene79698.t1 MTR_8g041600 49.390 164 75 3 17 174 22 183 7.66e-50 163
MS.gene79698.t1 MTR_1g093140 46.821 173 76 4 15 174 17 186 1.20e-49 164
MS.gene79698.t1 MTR_8g041620 49.390 164 75 3 17 174 22 183 3.85e-49 163
MS.gene79698.t1 MTR_8g041600 49.390 164 75 3 17 174 22 183 6.03e-49 162
MS.gene79698.t1 MTR_1g093120 44.512 164 84 3 17 174 18 180 9.44e-49 162
MS.gene79698.t1 MTR_8g006930 44.444 162 83 3 17 174 22 180 3.48e-46 155
MS.gene79698.t1 MTR_7g056347 44.848 165 80 3 16 174 21 180 4.85e-46 155
MS.gene79698.t1 MTR_7g078010 44.444 162 83 3 17 174 22 180 6.65e-46 152
MS.gene79698.t1 MTR_1g093110 44.643 168 80 4 17 174 19 183 9.49e-46 154
MS.gene79698.t1 MTR_4g119410 43.827 162 84 3 17 174 22 180 2.20e-45 153
MS.gene79698.t1 MTR_7g078010 44.444 162 83 3 17 174 22 180 5.06e-45 152
MS.gene79698.t1 MTR_8g063070 40.437 183 95 4 1 174 3 180 4.17e-44 150
MS.gene79698.t1 MTR_4g099380 43.558 163 76 3 19 174 129 282 2.12e-43 145
MS.gene79698.t1 MTR_8g062600 42.169 166 83 3 16 174 21 180 6.41e-43 147
MS.gene79698.t1 MTR_4g024660 42.500 160 89 3 17 174 22 180 1.96e-42 145
MS.gene79698.t1 MTR_2g069020 43.210 162 87 3 16 173 19 179 3.17e-42 145
MS.gene79698.t1 MTR_2g069020 43.210 162 87 3 16 173 19 179 5.99e-42 145
MS.gene79698.t1 MTR_2g069010 41.358 162 90 2 16 173 21 181 1.38e-41 144
MS.gene79698.t1 MTR_0032s0040 42.021 188 93 3 1 176 1 184 3.43e-41 142
MS.gene79698.t1 MTR_7g029655 41.916 167 86 2 15 174 15 177 8.67e-41 141
MS.gene79698.t1 MTR_2g068950 40.678 177 99 4 1 173 1 175 1.33e-40 140
MS.gene79698.t1 MTR_2g068960 41.243 177 98 4 1 173 1 175 8.13e-40 139
MS.gene79698.t1 MTR_7g056393 40.741 162 89 3 17 174 22 180 2.36e-39 137
MS.gene79698.t1 MTR_7g105070 39.490 157 94 1 19 174 15 171 1.04e-37 133
MS.gene79698.t1 MTR_7g056370 38.509 161 92 3 18 174 2 159 2.28e-36 126
MS.gene79698.t1 MTR_2g069060 42.138 159 75 2 16 174 21 162 3.90e-36 129
MS.gene79698.t1 MTR_2g069070 40.000 160 79 2 16 175 21 163 7.73e-36 124
MS.gene79698.t1 MTR_1g070185 40.506 158 94 0 17 174 23 180 1.42e-35 127
MS.gene79698.t1 MTR_8g469400 41.026 156 77 4 17 170 22 164 1.17e-33 122
MS.gene79698.t1 MTR_2g069060 46.667 120 63 1 55 174 22 140 3.75e-33 119
MS.gene79698.t1 MTR_1g032220 36.875 160 93 2 19 174 28 183 1.12e-30 114
MS.gene79698.t1 MTR_1g032140 37.500 160 92 2 19 174 21 176 1.15e-30 114
MS.gene79698.t1 MTR_1g032250 34.857 175 105 3 4 174 14 183 2.85e-30 114
MS.gene79698.t1 MTR_1g043840 62.162 74 27 1 71 144 256 328 1.50e-27 105
MS.gene79698.t1 MTR_7g056353 33.540 161 78 4 17 176 24 156 1.03e-22 94.4
MS.gene79698.t1 MTR_7g068650 30.573 157 101 3 14 163 1 156 3.27e-20 86.7
MS.gene79698.t1 MTR_8g009180 80.952 42 8 0 131 172 45 86 8.82e-19 81.6
MS.gene79698.t1 MTR_2g068800 32.450 151 80 3 27 176 21 150 1.34e-17 78.6
MS.gene79698.t1 MTR_2g068850 35.385 130 77 4 27 153 21 146 1.17e-16 74.7
MS.gene79698.t1 MTR_2g068840 35.385 130 77 4 27 153 21 146 2.01e-15 73.2
MS.gene79698.t1 MTR_3g091350 29.825 171 103 4 4 170 13 170 5.94e-15 72.0
MS.gene79698.t1 MTR_3g070860 26.316 171 118 3 14 177 1 170 6.58e-15 71.6
MS.gene79698.t1 MTR_1g062110 33.333 165 93 6 27 179 26 185 6.73e-15 71.2
MS.gene79698.t1 MTR_1g062110 33.333 165 93 6 27 179 26 185 7.68e-15 71.6
MS.gene79698.t1 MTR_5g065010 26.531 147 105 2 27 170 3 149 1.57e-14 70.5
MS.gene79698.t1 MTR_4g015790 30.935 139 86 4 43 176 48 181 3.36e-14 69.7
MS.gene79698.t1 MTR_3g045230 30.968 155 93 3 27 174 17 164 6.75e-14 68.9
MS.gene79698.t1 MTR_8g024120 29.730 111 75 1 51 161 33 140 1.77e-13 67.4
MS.gene79698.t1 MTR_1g032230 32.090 134 64 2 19 148 22 132 1.91e-13 67.0
MS.gene79698.t1 MTR_5g082750 30.328 122 80 2 60 177 49 169 3.42e-13 67.0
MS.gene79698.t1 MTR_5g055690 26.316 152 96 3 27 166 12 159 6.45e-13 65.5
MS.gene79698.t1 MTR_0009s0050 35.455 110 64 3 55 162 40 144 7.48e-13 65.9
MS.gene79698.t1 MTR_0009s0050 35.455 110 64 3 55 162 40 144 8.13e-13 65.9
MS.gene79698.t1 MTR_5g055690 26.316 152 96 3 27 166 12 159 9.20e-13 65.5
MS.gene79698.t1 MTR_3g092890 32.353 102 63 1 60 161 38 133 1.05e-12 65.5
MS.gene79698.t1 MTR_3g043900 30.128 156 92 5 27 174 17 163 2.25e-12 64.3
MS.gene79698.t1 MTR_7g062570 28.058 139 88 4 28 161 20 151 2.69e-12 64.3
MS.gene79698.t1 MTR_5g048570 28.477 151 91 4 27 166 12 156 3.94e-12 63.9
MS.gene79698.t1 MTR_7g081710 26.667 135 94 2 30 161 16 148 4.08e-12 63.5
MS.gene79698.t1 MTR_1g034140 33.962 106 60 4 60 165 27 122 6.30e-12 63.2
MS.gene79698.t1 MTR_5g055800 30.303 132 83 5 27 155 12 137 9.62e-12 62.8
MS.gene79698.t1 MTR_7g102720 31.313 99 62 1 55 153 32 124 9.93e-12 62.4
MS.gene79698.t1 MTR_5g048850 32.886 149 88 7 27 170 12 153 1.06e-11 62.0
MS.gene79698.t1 MTR_0009s0410 28.188 149 97 5 28 172 12 154 1.08e-11 60.5
MS.gene79698.t1 MTR_5g032880 36.782 87 52 2 44 130 362 445 1.31e-11 62.8
MS.gene79698.t1 MTR_5g048850 32.886 149 88 7 27 170 12 153 1.34e-11 62.4
MS.gene79698.t1 MTR_5g032870 35.165 91 56 2 44 134 24 111 1.69e-11 62.0
MS.gene79698.t1 MTR_1g033810 30.097 103 69 2 60 162 47 146 1.75e-11 62.0
MS.gene79698.t1 MTR_4g087130 34.444 90 56 1 40 126 6 95 2.06e-11 61.6
MS.gene79698.t1 MTR_4g087120 35.556 90 55 1 40 126 6 95 2.58e-11 61.2
MS.gene79698.t1 MTR_3g091360 29.412 136 92 3 39 170 28 163 2.77e-11 61.2
MS.gene79698.t1 MTR_5g011250 33.333 105 67 2 60 162 47 150 3.73e-11 60.8
MS.gene79698.t1 MTR_5g048740 25.828 151 95 5 28 166 11 156 4.12e-11 60.8
MS.gene79698.t1 MTR_7g062600 32.075 106 67 3 57 162 48 148 4.26e-11 60.8
MS.gene79698.t1 MTR_7g062580 26.619 139 94 3 27 162 19 152 4.86e-11 60.8
MS.gene79698.t1 MTR_8g075830 30.172 116 76 4 48 161 26 138 5.02e-11 60.5
MS.gene79698.t1 MTR_4g087140 33.333 99 62 2 36 130 1 99 5.18e-11 60.5
MS.gene79698.t1 MTR_0009s0480 29.333 150 96 6 27 172 11 154 6.44e-11 59.7
MS.gene79698.t1 MTR_7g037530 36.283 113 50 5 1 112 1 92 9.05e-11 57.0
MS.gene79698.t1 MTR_0009s0480 29.530 149 95 6 28 172 12 154 9.06e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene79698.t1 AT5G59540 55.488 164 66 4 17 174 14 176 2.34e-59 187
MS.gene79698.t1 AT1G06640 53.892 167 71 2 16 176 14 180 3.45e-59 186
MS.gene79698.t1 AT1G06640 52.874 174 75 3 9 176 8 180 6.37e-59 187
MS.gene79698.t1 AT5G59540 55.488 164 66 4 17 174 14 176 1.02e-58 187
MS.gene79698.t1 AT1G06640 53.892 167 71 2 16 176 14 180 2.71e-58 186
MS.gene79698.t1 AT1G06650 52.121 165 73 2 16 174 14 178 1.78e-57 183
MS.gene79698.t1 AT1G06650 52.121 165 73 2 16 174 14 178 7.56e-57 183
MS.gene79698.t1 AT1G06620 51.266 158 73 2 19 173 18 174 4.17e-55 176
MS.gene79698.t1 AT1G04350 51.220 164 71 3 16 174 10 169 1.42e-54 177
MS.gene79698.t1 AT1G06620 51.266 158 73 2 19 173 18 174 4.08e-54 176
MS.gene79698.t1 AT2G30830 48.765 162 82 1 16 176 9 170 4.31e-51 167
MS.gene79698.t1 AT5G59530 52.727 165 68 6 17 174 13 174 9.99e-51 167
MS.gene79698.t1 AT2G30840 47.853 163 80 2 16 173 9 171 1.14e-50 165
MS.gene79698.t1 AT5G43440 48.824 170 76 4 15 176 11 177 1.22e-50 164
MS.gene79698.t1 AT1G06645 50.595 168 75 3 16 175 27 194 2.66e-50 166
MS.gene79698.t1 AT2G30840 47.853 163 80 2 16 173 9 171 3.07e-50 166
MS.gene79698.t1 AT2G30840 47.853 163 80 2 16 173 9 171 3.63e-50 165
MS.gene79698.t1 AT5G43440 48.824 170 76 4 15 176 11 177 1.06e-49 164
MS.gene79698.t1 AT1G03410 48.780 164 77 3 16 173 8 170 1.18e-49 164
MS.gene79698.t1 AT1G03410 48.780 164 77 3 16 173 45 207 2.66e-49 164
MS.gene79698.t1 AT3G61400 46.429 168 79 3 15 173 12 177 2.59e-48 159
MS.gene79698.t1 AT5G43450 44.048 168 80 3 15 174 11 172 4.51e-48 158
MS.gene79698.t1 AT2G25450 48.750 160 79 2 16 173 9 167 4.85e-48 160
MS.gene79698.t1 AT3G61400 46.429 168 79 3 15 173 12 177 1.03e-47 159
MS.gene79698.t1 AT5G43450 44.048 168 80 3 15 174 11 172 2.48e-47 158
MS.gene79698.t1 AT1G04380 43.750 160 72 3 16 174 13 155 1.08e-43 146
MS.gene79698.t1 AT1G04380 43.750 160 72 3 16 174 13 155 5.86e-43 146
MS.gene79698.t1 AT1G03400 45.732 164 72 4 16 173 8 160 8.62e-42 143
MS.gene79698.t1 AT1G03400 45.732 164 72 4 16 173 8 160 2.19e-41 143
MS.gene79698.t1 AT3G13610 30.719 153 94 4 27 174 26 171 6.87e-19 82.8
MS.gene79698.t1 AT1G55290 30.519 154 94 5 27 174 25 171 1.01e-18 82.4
MS.gene79698.t1 AT3G12900 31.579 152 100 3 27 176 21 170 5.23e-18 80.5
MS.gene79698.t1 AT2G36690 30.345 145 90 3 25 161 18 159 2.53e-14 70.1
MS.gene79698.t1 AT2G36690 30.345 145 90 3 25 161 18 159 2.53e-14 70.1
MS.gene79698.t1 AT4G10500 29.412 102 69 1 60 161 44 142 1.79e-12 64.7
MS.gene79698.t1 AT2G38240 27.517 149 96 4 20 163 4 145 2.73e-12 64.3
MS.gene79698.t1 AT5G05600 28.302 106 75 1 56 161 58 162 7.69e-12 62.8
MS.gene79698.t1 AT2G44800 27.586 145 99 3 21 161 9 151 8.14e-12 62.8
MS.gene79698.t1 AT5G05600 25.767 163 111 4 7 161 2 162 1.27e-11 62.4
MS.gene79698.t1 AT3G19010 31.933 119 71 3 55 168 23 136 1.39e-11 62.0
MS.gene79698.t1 AT3G19010 31.933 119 71 3 55 168 23 136 1.58e-11 62.0
MS.gene79698.t1 AT3G19010 31.933 119 71 3 55 168 23 136 1.73e-11 62.0
MS.gene79698.t1 AT3G19010 31.933 119 71 3 55 168 23 136 1.73e-11 62.0
MS.gene79698.t1 AT3G55970 27.869 122 83 2 59 176 51 171 1.80e-11 61.6
MS.gene79698.t1 AT3G55970 27.869 122 83 2 59 176 51 171 3.09e-11 61.2
MS.gene79698.t1 AT4G22880 30.476 105 70 2 60 162 47 150 3.72e-11 60.8
MS.gene79698.t1 AT4G22880 30.476 105 70 2 60 162 47 150 3.72e-11 60.8
MS.gene79698.t1 AT4G22880 30.476 105 70 2 60 162 47 150 3.72e-11 60.8
MS.gene79698.t1 AT4G10490 26.471 102 72 1 60 161 42 140 4.69e-11 60.8
MS.gene79698.t1 AT4G25300 32.000 125 78 5 40 161 30 150 7.88e-11 60.1

Find 35 sgRNAs with CRISPR-Local

Find 42 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAGCTCACCAGCACTTAAT+TGG 0.240215 8.4:-67414503 MS.gene79698:CDS
GAAACAAAAGCTGGTGTAAA+AGG 0.285364 8.4:-67414867 MS.gene79698:CDS
TCTTCTGGTTTGGGAGTATC+AGG 0.295482 8.4:+67414453 None:intergenic
ATCAGGTTGATGATGGAATA+AGG 0.321050 8.4:+67414812 None:intergenic
CACAGGAATATCTTCTGGTT+TGG 0.328301 8.4:+67414443 None:intergenic
TAGGCTAACTCATATTTATC+AGG 0.330157 8.4:+67414795 None:intergenic
AATAACATGGCTTGTGTTGT+AGG 0.361872 8.4:+67414776 None:intergenic
ACAGGAATATCTTCTGGTTT+GGG 0.384567 8.4:+67414444 None:intergenic
CATACCACAGGAATATCTTC+TGG 0.404518 8.4:+67414438 None:intergenic
CATATTTATCAGGTTGATGA+TGG 0.411678 8.4:+67414805 None:intergenic
AAGATTTGTATACTAGAGAT+AGG 0.424171 8.4:-67414563 MS.gene79698:CDS
GTTAGGCTTGTTTGTATCAG+TGG 0.449425 8.4:+67414926 None:intergenic
GTTCTTGAGGATTTGAAAGA+TGG 0.455408 8.4:-67414624 MS.gene79698:CDS
ATTTGAAAGATGGTGTTAAG+AGG 0.479834 8.4:-67414614 MS.gene79698:CDS
AAGATATTCCTGTGGTATGC+AGG 0.486135 8.4:-67414434 MS.gene79698:CDS
GTTCATTCAATATAGAATCA+AGG 0.486469 8.4:+67414904 None:intergenic
CTTTATTATCAATATCTACA+AGG 0.487201 8.4:+67414742 None:intergenic
GGTTGATGATGGAATAAGGT+AGG 0.489286 8.4:+67414816 None:intergenic
TTCAATATAGAATCAAGGTT+AGG 0.490953 8.4:+67414909 None:intergenic
GGTGTAAAAGGACTTGTTGA+TGG 0.518526 8.4:-67414855 MS.gene79698:CDS
GTATCTCTCCAATTAAGTGC+TGG 0.524725 8.4:+67414495 None:intergenic
TGAAGGAAGCATGTGAAACA+TGG 0.532384 8.4:-67414686 MS.gene79698:CDS
AATCCCTTTGAGTGTTCTTG+AGG 0.532394 8.4:-67414637 MS.gene79698:CDS
GAACACTCAAAGGGATTCCA+TGG 0.540454 8.4:+67414643 None:intergenic
AAATCCTCAAGAACACTCAA+AGG 0.548795 8.4:+67414633 None:intergenic
AATCCTCAAGAACACTCAAA+GGG 0.552395 8.4:+67414634 None:intergenic
GCATTTGATGAAACAAAAGC+TGG 0.578863 8.4:-67414876 MS.gene79698:CDS
ATATCTACAAGGTCTATGAC+AGG 0.583641 8.4:+67414753 None:intergenic
GTTGATGATGGAATAAGGTA+GGG 0.587595 8.4:+67414817 None:intergenic
TACACATACCTGCATACCAC+AGG 0.600086 8.4:+67414426 None:intergenic
GAAGGAAGCATGTGAAACAT+GGG 0.600229 8.4:-67414685 MS.gene79698:CDS
GGTCTATGACAGGAATAACA+TGG 0.683113 8.4:+67414763 None:intergenic
AAGGAAGCATGTGAAACATG+GGG 0.690006 8.4:-67414684 MS.gene79698:CDS
GTAAAAGGACTTGTTGATGG+AGG 0.724997 8.4:-67414852 MS.gene79698:CDS
CAAACCAGAAGATATTCCTG+TGG 0.734477 8.4:-67414442 MS.gene79698:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTTTATTATCAATATCTACA+AGG + chr8.4:67414607-67414626 None:intergenic 20.0%
!!! AGATACTTTTATATGTTACT+TGG - chr8.4:67414868-67414887 MS.gene79698:CDS 20.0%
! AAAAATTGTTGACAAAGTGA+AGG - chr8.4:67414643-67414662 MS.gene79698:CDS 25.0%
! AAGATTTGTATACTAGAGAT+AGG - chr8.4:67414783-67414802 MS.gene79698:CDS 25.0%
! GTTCATTCAATATAGAATCA+AGG + chr8.4:67414445-67414464 None:intergenic 25.0%
! TTCAATATAGAATCAAGGTT+AGG + chr8.4:67414440-67414459 None:intergenic 25.0%
!!! ACAATTTTTTGGTGAATACT+TGG + chr8.4:67414632-67414651 None:intergenic 25.0%
!!! TCACTTTGTCAACAATTTTT+TGG + chr8.4:67414643-67414662 None:intergenic 25.0%
TAGGCTAACTCATATTTATC+AGG + chr8.4:67414554-67414573 None:intergenic 30.0%
! ATTTGAAAGATGGTGTTAAG+AGG - chr8.4:67414732-67414751 MS.gene79698:CDS 30.0%
!! CATATTTATCAGGTTGATGA+TGG + chr8.4:67414544-67414563 None:intergenic 30.0%
!!! TTTTTTCAGGTTGTTAACCA+TGG - chr8.4:67414686-67414705 MS.gene79698:CDS 30.0%
AAATCCTCAAGAACACTCAA+AGG + chr8.4:67414716-67414735 None:intergenic 35.0%
AATCCTCAAGAACACTCAAA+GGG + chr8.4:67414715-67414734 None:intergenic 35.0%
ATATCTACAAGGTCTATGAC+AGG + chr8.4:67414596-67414615 None:intergenic 35.0%
GAAACAAAAGCTGGTGTAAA+AGG - chr8.4:67414479-67414498 MS.gene79698:CDS 35.0%
GCATTTGATGAAACAAAAGC+TGG - chr8.4:67414470-67414489 MS.gene79698:CDS 35.0%
GTTCTTGAGGATTTGAAAGA+TGG - chr8.4:67414722-67414741 MS.gene79698:CDS 35.0%
! AATAACATGGCTTGTGTTGT+AGG + chr8.4:67414573-67414592 None:intergenic 35.0%
!! ACAGGAATATCTTCTGGTTT+GGG + chr8.4:67414905-67414924 None:intergenic 35.0%
!! ATCAGGTTGATGATGGAATA+AGG + chr8.4:67414537-67414556 None:intergenic 35.0%
!! GTTGATGATGGAATAAGGTA+GGG + chr8.4:67414532-67414551 None:intergenic 35.0%
!! TGTTAAGAGGTTTTATGAGC+AGG - chr8.4:67414745-67414764 MS.gene79698:CDS 35.0%
!!! TGAAACATGGGGATTTTTTC+AGG - chr8.4:67414673-67414692 MS.gene79698:CDS 35.0%
AAGATATTCCTGTGGTATGC+AGG - chr8.4:67414912-67414931 MS.gene79698:CDS 40.0%
AATCCCTTTGAGTGTTCTTG+AGG - chr8.4:67414709-67414728 MS.gene79698:CDS 40.0%
ATAGCTCACCAGCACTTAAT+TGG - chr8.4:67414843-67414862 MS.gene79698:CDS 40.0%
CAAACCAGAAGATATTCCTG+TGG - chr8.4:67414904-67414923 MS.gene79698:CDS 40.0%
CATACCACAGGAATATCTTC+TGG + chr8.4:67414911-67414930 None:intergenic 40.0%
GGTCTATGACAGGAATAACA+TGG + chr8.4:67414586-67414605 None:intergenic 40.0%
GTATCTCTCCAATTAAGTGC+TGG + chr8.4:67414854-67414873 None:intergenic 40.0%
! AAGGAAGCATGTGAAACATG+GGG - chr8.4:67414662-67414681 MS.gene79698:CDS 40.0%
! CACAGGAATATCTTCTGGTT+TGG + chr8.4:67414906-67414925 None:intergenic 40.0%
! GAAGGAAGCATGTGAAACAT+GGG - chr8.4:67414661-67414680 MS.gene79698:CDS 40.0%
! GTTAGGCTTGTTTGTATCAG+TGG + chr8.4:67414423-67414442 None:intergenic 40.0%
! TGAAGGAAGCATGTGAAACA+TGG - chr8.4:67414660-67414679 MS.gene79698:CDS 40.0%
!! GGTGTAAAAGGACTTGTTGA+TGG - chr8.4:67414491-67414510 MS.gene79698:CDS 40.0%
!! GGTTGATGATGGAATAAGGT+AGG + chr8.4:67414533-67414552 None:intergenic 40.0%
!! GTAAAAGGACTTGTTGATGG+AGG - chr8.4:67414494-67414513 MS.gene79698:CDS 40.0%
GAACACTCAAAGGGATTCCA+TGG + chr8.4:67414706-67414725 None:intergenic 45.0%
TACACATACCTGCATACCAC+AGG + chr8.4:67414923-67414942 None:intergenic 45.0%
!! TCTTCTGGTTTGGGAGTATC+AGG + chr8.4:67414896-67414915 None:intergenic 45.0%


Chromosome Type Strat End Strand Name
chr8.4 gene 67414413 67414955 67414413 ID=MS.gene79698
chr8.4 mRNA 67414413 67414955 67414413 ID=MS.gene79698.t1;Parent=MS.gene79698
chr8.4 exon 67414413 67414955 67414413 ID=MS.gene79698.t1.exon1;Parent=MS.gene79698.t1
chr8.4 CDS 67414413 67414955 67414413 ID=cds.MS.gene79698.t1;Parent=MS.gene79698.t1
Gene Sequence

>MS.gene79698

ATGGGAACCACTGATACAAACAAGCCTAACCTTGATTCTATATTGAATGAACGCAAAGCATTTGATGAAACAAAAGCTGGTGTAAAAGGACTTGTTGATGGAGGACTTAAGAAGATCCCTACCTTATTCCATCATCAACCTGATAAATATGAGTTAGCCTACAACACAAGCCATGTTATTCCTGTCATAGACCTTGTAGATATTGATAATAAAGATCCAAGTATTCACCAAAAAATTGTTGACAAAGTGAAGGAAGCATGTGAAACATGGGGATTTTTTCAGGTTGTTAACCATGGAATCCCTTTGAGTGTTCTTGAGGATTTGAAAGATGGTGTTAAGAGGTTTTATGAGCAGGATACAGAAGTCAAAAAAGATTTGTATACTAGAGATAGGCATAGATCTTTTATTTATAATAGCAATTTTGATATTTATAGCTCACCAGCACTTAATTGGAGAGATACTTTTATATGTTACTTGGCTCCTGATACTCCCAAACCAGAAGATATTCCTGTGGTATGCAGGTATGTGTATGCATCTCTATAA
Protein sequence

>MS.gene79698.t1

MGTTDTNKPNLDSILNERKAFDETKAGVKGLVDGGLKKIPTLFHHQPDKYELAYNTSHVIPVIDLVDIDNKDPSIHQKIVDKVKEACETWGFFQVVNHGIPLSVLEDLKDGVKRFYEQDTEVKKDLYTRDRHRSFIYNSNFDIYSSPALNWRDTFICYLAPDTPKPEDIPVVCRYVYASL