Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene79782.t1 | XP_003619827.1 | 95.5 | 177 | 8 | 0 | 1 | 177 | 1 | 177 | 6.50E-92 | 346.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene79782.t1 | Q9LVH4 | 67.3 | 171 | 56 | 0 | 7 | 177 | 7 | 177 | 9.3e-63 | 241.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene79782.t1 | G7KPS8 | 95.5 | 177 | 8 | 0 | 1 | 177 | 1 | 177 | 4.7e-92 | 346.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049378 | MS.gene79782 | 0.804483 | 2.11E-49 | -1.69E-46 |
MS.gene052493 | MS.gene79782 | 0.807493 | 4.92E-50 | -1.69E-46 |
MS.gene052674 | MS.gene79782 | 0.804501 | 2.10E-49 | -1.69E-46 |
MS.gene052677 | MS.gene79782 | 0.804108 | 2.53E-49 | -1.69E-46 |
MS.gene054468 | MS.gene79782 | 0.826829 | 2.19E-54 | -1.69E-46 |
MS.gene056480 | MS.gene79782 | 0.802399 | 5.72E-49 | -1.69E-46 |
MS.gene058081 | MS.gene79782 | 0.805172 | 1.52E-49 | -1.69E-46 |
MS.gene06052 | MS.gene79782 | 0.826986 | 2.01E-54 | -1.69E-46 |
MS.gene060851 | MS.gene79782 | 0.805963 | 1.04E-49 | -1.69E-46 |
MS.gene060852 | MS.gene79782 | 0.804071 | 2.58E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene79782.t1 | MTR_6g069470 | 95.480 | 177 | 8 | 0 | 1 | 177 | 1 | 177 | 3.21e-127 | 355 |
MS.gene79782.t1 | MTR_8g107340 | 72.941 | 170 | 46 | 0 | 8 | 177 | 12 | 181 | 5.41e-93 | 268 |
MS.gene79782.t1 | MTR_3g067585 | 66.871 | 163 | 54 | 0 | 13 | 175 | 1 | 163 | 1.58e-81 | 239 |
MS.gene79782.t1 | MTR_2g011590 | 65.031 | 163 | 57 | 0 | 15 | 177 | 2 | 164 | 7.78e-78 | 229 |
MS.gene79782.t1 | MTR_1g031650 | 56.098 | 164 | 71 | 1 | 15 | 177 | 4 | 167 | 9.39e-66 | 199 |
MS.gene79782.t1 | MTR_4g084280 | 49.390 | 164 | 83 | 0 | 13 | 176 | 1 | 164 | 1.51e-56 | 176 |
MS.gene79782.t1 | MTR_1g031650 | 55.039 | 129 | 58 | 0 | 49 | 177 | 2 | 130 | 7.31e-50 | 157 |
MS.gene79782.t1 | MTR_8g088320 | 43.750 | 160 | 89 | 1 | 13 | 171 | 161 | 320 | 5.56e-42 | 143 |
MS.gene79782.t1 | MTR_2g030230 | 41.765 | 170 | 98 | 1 | 3 | 171 | 158 | 327 | 9.14e-40 | 137 |
MS.gene79782.t1 | MTR_2g027100 | 38.217 | 157 | 95 | 2 | 13 | 167 | 1 | 157 | 8.55e-35 | 120 |
MS.gene79782.t1 | MTR_8g038400 | 40.588 | 170 | 96 | 2 | 7 | 171 | 196 | 365 | 1.22e-32 | 119 |
MS.gene79782.t1 | MTR_3g017500 | 38.125 | 160 | 98 | 1 | 13 | 171 | 209 | 368 | 7.97e-31 | 115 |
MS.gene79782.t1 | MTR_3g017500 | 38.125 | 160 | 98 | 1 | 13 | 171 | 239 | 398 | 1.66e-30 | 114 |
MS.gene79782.t1 | MTR_1g025550 | 40.449 | 89 | 48 | 3 | 13 | 96 | 255 | 343 | 6.97e-13 | 66.2 |
MS.gene79782.t1 | MTR_4g073400 | 43.820 | 89 | 45 | 3 | 13 | 96 | 255 | 343 | 2.61e-12 | 64.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene79782.t1 | AT3G17980 | 65.537 | 177 | 61 | 0 | 1 | 177 | 1 | 177 | 6.42e-85 | 248 |
MS.gene79782.t1 | AT1G73580 | 68.862 | 167 | 52 | 0 | 11 | 177 | 2 | 168 | 3.35e-81 | 238 |
MS.gene79782.t1 | AT1G48590 | 66.272 | 169 | 56 | 1 | 9 | 177 | 2 | 169 | 3.57e-80 | 235 |
MS.gene79782.t1 | AT1G48590 | 66.272 | 169 | 56 | 1 | 9 | 177 | 2 | 169 | 3.57e-80 | 235 |
MS.gene79782.t1 | AT1G48590 | 66.272 | 169 | 56 | 1 | 9 | 177 | 33 | 200 | 6.98e-80 | 236 |
MS.gene79782.t1 | AT5G37740 | 61.310 | 168 | 62 | 1 | 13 | 177 | 1 | 168 | 1.52e-73 | 219 |
MS.gene79782.t1 | AT1G70810 | 60.606 | 165 | 65 | 0 | 13 | 177 | 1 | 165 | 6.82e-71 | 212 |
MS.gene79782.t1 | AT1G66360 | 59.756 | 164 | 64 | 1 | 13 | 174 | 1 | 164 | 3.64e-70 | 210 |
MS.gene79782.t1 | AT5G37740 | 57.865 | 178 | 62 | 2 | 13 | 177 | 1 | 178 | 4.67e-70 | 210 |
MS.gene79782.t1 | AT1G70790 | 61.350 | 163 | 61 | 1 | 17 | 177 | 6 | 168 | 1.18e-68 | 207 |
MS.gene79782.t1 | AT1G70790 | 61.350 | 163 | 61 | 1 | 17 | 177 | 6 | 168 | 1.18e-68 | 207 |
MS.gene79782.t1 | AT1G70790 | 61.350 | 163 | 61 | 1 | 17 | 177 | 6 | 168 | 1.18e-68 | 207 |
MS.gene79782.t1 | AT2G01540 | 57.669 | 163 | 67 | 1 | 17 | 177 | 6 | 168 | 1.19e-66 | 201 |
MS.gene79782.t1 | AT1G23140 | 57.407 | 162 | 69 | 0 | 13 | 174 | 1 | 162 | 2.12e-65 | 198 |
MS.gene79782.t1 | AT1G70800 | 55.758 | 165 | 73 | 0 | 13 | 177 | 10 | 174 | 1.53e-64 | 196 |
MS.gene79782.t1 | AT1G48590 | 52.071 | 169 | 48 | 2 | 9 | 177 | 33 | 168 | 1.98e-56 | 175 |
MS.gene79782.t1 | AT1G70790 | 59.231 | 130 | 51 | 1 | 50 | 177 | 2 | 131 | 4.85e-50 | 158 |
MS.gene79782.t1 | AT4G05330 | 43.125 | 160 | 90 | 1 | 13 | 171 | 140 | 299 | 1.09e-37 | 131 |
MS.gene79782.t1 | AT5G47710 | 39.634 | 164 | 97 | 2 | 13 | 174 | 1 | 164 | 1.68e-37 | 127 |
MS.gene79782.t1 | AT5G47710 | 39.634 | 164 | 97 | 2 | 13 | 174 | 1 | 164 | 1.68e-37 | 127 |
MS.gene79782.t1 | AT5G47710 | 39.634 | 164 | 97 | 2 | 13 | 174 | 1 | 164 | 1.68e-37 | 127 |
MS.gene79782.t1 | AT5G47710 | 39.634 | 164 | 97 | 2 | 13 | 174 | 1 | 164 | 1.68e-37 | 127 |
MS.gene79782.t1 | AT4G05330 | 43.125 | 160 | 90 | 1 | 13 | 171 | 175 | 334 | 4.33e-37 | 130 |
MS.gene79782.t1 | AT4G05330 | 43.125 | 160 | 90 | 1 | 13 | 171 | 175 | 334 | 4.33e-37 | 130 |
MS.gene79782.t1 | AT4G21160 | 40.588 | 170 | 97 | 2 | 6 | 171 | 166 | 335 | 6.20e-36 | 127 |
MS.gene79782.t1 | AT4G21160 | 40.588 | 170 | 97 | 2 | 6 | 171 | 166 | 335 | 6.20e-36 | 127 |
MS.gene79782.t1 | AT4G21160 | 40.588 | 170 | 97 | 2 | 6 | 171 | 166 | 335 | 6.20e-36 | 127 |
MS.gene79782.t1 | AT4G21160 | 40.588 | 170 | 97 | 2 | 6 | 171 | 166 | 335 | 6.20e-36 | 127 |
MS.gene79782.t1 | AT3G07940 | 42.500 | 160 | 91 | 1 | 13 | 171 | 224 | 383 | 5.61e-35 | 126 |
MS.gene79782.t1 | AT5G04220 | 44.706 | 85 | 42 | 3 | 17 | 96 | 38 | 122 | 3.04e-12 | 63.9 |
MS.gene79782.t1 | AT5G04220 | 44.706 | 85 | 42 | 3 | 17 | 96 | 260 | 344 | 4.17e-12 | 63.9 |
MS.gene79782.t1 | AT5G04220 | 44.706 | 85 | 42 | 3 | 17 | 96 | 198 | 282 | 4.70e-12 | 63.5 |
MS.gene79782.t1 | AT1G03370 | 33.898 | 118 | 68 | 3 | 20 | 132 | 3 | 115 | 5.90e-12 | 63.5 |
MS.gene79782.t1 | AT1G03370 | 33.898 | 118 | 68 | 3 | 20 | 132 | 3 | 115 | 6.71e-12 | 63.5 |
Find 40 sgRNAs with CRISPR-Local
Find 96 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CAATCACTTACCAATGTAAC+TGG | 0.259798 | 6.2:-72615935 | None:intergenic |
TTGCACTGGATTGATCTTCC+TGG | 0.299246 | 6.2:+72617065 | MS.gene79782:CDS |
TCTCTGATGGAGAATCTATT+AGG | 0.386056 | 6.2:+72615096 | MS.gene79782:CDS |
TACGGTGCCGTTTGCAAGGC+CGG | 0.395496 | 6.2:-72616910 | None:intergenic |
ATTGATCTTCCTGGTTCTAA+AGG | 0.412234 | 6.2:+72617074 | MS.gene79782:CDS |
GCAGTCTAAGGATCATATCT+TGG | 0.412690 | 6.2:-72617010 | None:intergenic |
TACATCTTGATTACAACATA+AGG | 0.417586 | 6.2:-72615183 | None:intergenic |
ACCAATGTAACTGGGTGATT+AGG | 0.417936 | 6.2:-72615926 | None:intergenic |
TGGTTGTATCCGCTTGATTA+CGG | 0.424732 | 6.2:-72616928 | None:intergenic |
GATCTATAACAGACAGAGTA+AGG | 0.440032 | 6.2:-72615904 | None:intergenic |
GCAAGGCAGTTGTGCTTGCT+TGG | 0.456659 | 6.2:-72616948 | None:intergenic |
TGTAATCAAGATGTATAATC+AGG | 0.457131 | 6.2:+72615191 | MS.gene79782:CDS |
TTTAGCAAAGATGACAAAAT+GGG | 0.458958 | 6.2:+72616834 | MS.gene79782:CDS |
GCCTTGAGGATGAATGTAAC+CGG | 0.480599 | 6.2:+72616891 | MS.gene79782:CDS |
ATAATAAATACAGCTCTCTT+CGG | 0.487354 | 6.2:-72616970 | None:intergenic |
AATGTAACCGGCCTTGCAAA+CGG | 0.489187 | 6.2:+72616903 | MS.gene79782:CDS |
TGATTACGGTGCCGTTTGCA+AGG | 0.511473 | 6.2:-72616914 | None:intergenic |
AAGTGGAAATCAGTTTGCAC+TGG | 0.519685 | 6.2:+72617051 | MS.gene79782:CDS |
CATCCTCAAGGCTTCTATGT+AGG | 0.521839 | 6.2:-72616880 | None:intergenic |
AGCTGTATTTATTATAGCAA+TGG | 0.541875 | 6.2:+72616978 | MS.gene79782:CDS |
AGATGCGGTATTTGACGCCT+CGG | 0.547337 | 6.2:+72616857 | MS.gene79782:CDS |
CAAGGCTTCTATGTAGGCCG+AGG | 0.548361 | 6.2:-72616874 | None:intergenic |
GCCGGTTACATTCATCCTCA+AGG | 0.552249 | 6.2:-72616892 | None:intergenic |
TCCTAATCACCCAGTTACAT+TGG | 0.552725 | 6.2:+72615925 | MS.gene79782:CDS |
AGAATCTATTAGGCCTTCTG+AGG | 0.559791 | 6.2:+72615106 | MS.gene79782:CDS |
GATTATAAACCTTTAGAACC+AGG | 0.577547 | 6.2:-72617083 | None:intergenic |
GATCCTTAGACTGCAAAATG+TGG | 0.590504 | 6.2:+72617019 | MS.gene79782:CDS |
AAATGTGGAATGTGGTGAAG+TGG | 0.600672 | 6.2:+72617034 | MS.gene79782:CDS |
GCTTCACACGAACCCTCAGA+AGG | 0.617469 | 6.2:-72615119 | None:intergenic |
GTAAGGTCTTCATTCCACTC+AGG | 0.618175 | 6.2:-72615887 | None:intergenic |
AAAAGAATGTTAATCCTGAG+TGG | 0.623609 | 6.2:+72615873 | MS.gene79782:CDS |
AGATGACAAAATGGGAGATG+CGG | 0.626598 | 6.2:+72616842 | MS.gene79782:CDS |
CGGCCTACATAGAAGCCTTG+AGG | 0.640768 | 6.2:+72616877 | MS.gene79782:CDS |
AAATACAGCTCTCTTCGGCA+AGG | 0.644242 | 6.2:-72616965 | None:intergenic |
GAATCTATTAGGCCTTCTGA+GGG | 0.645365 | 6.2:+72615107 | MS.gene79782:CDS |
CTGAGGGTTCGTGTGAAGCG+TGG | 0.662794 | 6.2:+72615123 | MS.gene79782:CDS |
TACGAACATCACGAACAGCA+AGG | 0.662931 | 6.2:-72615152 | None:intergenic |
AATCACTTACCAATGTAACT+GGG | 0.672409 | 6.2:-72615934 | None:intergenic |
CAAACGGCACCGTAATCAAG+CGG | 0.692308 | 6.2:+72616919 | MS.gene79782:CDS |
AGACTGCAAAATGTGGAATG+TGG | 0.721570 | 6.2:+72617026 | MS.gene79782:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTGTTGAAAAAAAAATTAAA+GGG | - | chr6.2:72615325-72615344 | None:intergenic | 10.0% |
!! | TTTGTTGAAAAAAAAATTAA+AGG | - | chr6.2:72615326-72615345 | None:intergenic | 10.0% |
!! | AATATATTCAATTGAATCAA+GGG | + | chr6.2:72615506-72615525 | MS.gene79782:intron | 15.0% |
!! | TAATATATTCAATTGAATCA+AGG | + | chr6.2:72615505-72615524 | MS.gene79782:intron | 15.0% |
!! | TGTTGAAAAAAAAATTAAAG+GGG | - | chr6.2:72615324-72615343 | None:intergenic | 15.0% |
!! | TTATAATCAGAAACATTTAA+TGG | - | chr6.2:72616432-72616451 | None:intergenic | 15.0% |
!!! | TTACAAATATTTGACTTAAT+CGG | - | chr6.2:72616657-72616676 | None:intergenic | 15.0% |
!! | AAATATTTGTAATGATCTGA+CGG | + | chr6.2:72616665-72616684 | MS.gene79782:intron | 20.0% |
!! | AATCTAATGAAAGATAAAAC+AGG | - | chr6.2:72616495-72616514 | None:intergenic | 20.0% |
!! | ATTCAAAGTGATAAAAGAAA+TGG | - | chr6.2:72616319-72616338 | None:intergenic | 20.0% |
!! | CAAAAATTGTTTAACTGAAA+TGG | - | chr6.2:72616005-72616024 | None:intergenic | 20.0% |
!! | TATTTGTTCATTCAATGTAT+TGG | + | chr6.2:72616753-72616772 | MS.gene79782:intron | 20.0% |
!! | TTGAATGAACAAATATTGAT+AGG | - | chr6.2:72616748-72616767 | None:intergenic | 20.0% |
!!! | CTTTTGATTTATTGAATCAA+GGG | + | chr6.2:72615364-72615383 | MS.gene79782:intron | 20.0% |
! | AGCTGTATTTATTATAGCAA+TGG | + | chr6.2:72616978-72616997 | MS.gene79782:CDS | 25.0% |
! | ATAATAAATACAGCTCTCTT+CGG | - | chr6.2:72616973-72616992 | None:intergenic | 25.0% |
! | ATTGATGTTGAATGTAACAT+AGG | + | chr6.2:72615710-72615729 | MS.gene79782:intron | 25.0% |
! | GAAAAAAAAATTAAAGGGGT+TGG | - | chr6.2:72615320-72615339 | None:intergenic | 25.0% |
! | GATAAAAGAAATGGTTTGAA+AGG | - | chr6.2:72616310-72616329 | None:intergenic | 25.0% |
! | GTAAAAAATCTTTACACTGA+AGG | + | chr6.2:72616706-72616725 | MS.gene79782:intron | 25.0% |
! | TACATCTTGATTACAACATA+AGG | - | chr6.2:72615186-72615205 | None:intergenic | 25.0% |
! | TCAATAACAAGAAAATTGAG+TGG | - | chr6.2:72615446-72615465 | None:intergenic | 25.0% |
! | TGTAATCAAGATGTATAATC+AGG | + | chr6.2:72615191-72615210 | MS.gene79782:CDS | 25.0% |
! | TTTAGCAAAGATGACAAAAT+GGG | + | chr6.2:72616834-72616853 | MS.gene79782:CDS | 25.0% |
!! | TTATTTGCCAACTTTTCTTA+AGG | + | chr6.2:72615285-72615304 | MS.gene79782:intron | 25.0% |
!! | TTTTAGCAAAGATGACAAAA+TGG | + | chr6.2:72616833-72616852 | MS.gene79782:CDS | 25.0% |
!!! | ACATAGGTTTTAGTTATTGA+AGG | + | chr6.2:72615726-72615745 | MS.gene79782:intron | 25.0% |
!!! | CATAGGTTTTAGTTATTGAA+GGG | + | chr6.2:72615727-72615746 | MS.gene79782:intron | 25.0% |
!!! | GCTTTTGATTTATTGAATCA+AGG | + | chr6.2:72615363-72615382 | MS.gene79782:intron | 25.0% |
AAAAGAATGTTAATCCTGAG+TGG | + | chr6.2:72615873-72615892 | MS.gene79782:CDS | 30.0% | |
AATCACTTACCAATGTAACT+GGG | - | chr6.2:72615937-72615956 | None:intergenic | 30.0% | |
ACAGTATAAACATTTGACAC+TGG | - | chr6.2:72616591-72616610 | None:intergenic | 30.0% | |
AGCATCAAAAAAATCTCTGA+TGG | + | chr6.2:72615083-72615102 | MS.gene79782:CDS | 30.0% | |
AGTTGTTAACACTTCTATAC+AGG | + | chr6.2:72615643-72615662 | MS.gene79782:intron | 30.0% | |
GAACTAACCTTAAGAAAAGT+TGG | - | chr6.2:72615295-72615314 | None:intergenic | 30.0% | |
TGACAACACTGATCTATTTA+TGG | + | chr6.2:72616212-72616231 | MS.gene79782:intron | 30.0% | |
! | AGTAATGAATTTTGAACCTG+TGG | + | chr6.2:72616273-72616292 | MS.gene79782:intron | 30.0% |
! | ATGATGATGATGATGATGAA+TGG | - | chr6.2:72615245-72615264 | None:intergenic | 30.0% |
!!! | AGAGATTTTTTTGATGCTGA+TGG | - | chr6.2:72615081-72615100 | None:intergenic | 30.0% |
AGCACTCGTTAAAGAAACAA+TGG | - | chr6.2:72616524-72616543 | None:intergenic | 35.0% | |
CAATATCTAGCATCTCTACA+AGG | - | chr6.2:72615772-72615791 | None:intergenic | 35.0% | |
CAATCACTTACCAATGTAAC+TGG | - | chr6.2:72615938-72615957 | None:intergenic | 35.0% | |
CAATGTATTGGATTGCTCAT+TGG | + | chr6.2:72616765-72616784 | MS.gene79782:intron | 35.0% | |
CTCAAAAAAATGAGTTCCCT+TGG | - | chr6.2:72616547-72616566 | None:intergenic | 35.0% | |
GATCTATAACAGACAGAGTA+AGG | - | chr6.2:72615907-72615926 | None:intergenic | 35.0% | |
TAGATCAGTGTTGTCAATTG+CGG | - | chr6.2:72616208-72616227 | None:intergenic | 35.0% | |
TATAGCAGTGTACAACATAG+CGG | + | chr6.2:72616063-72616082 | MS.gene79782:intron | 35.0% | |
TCTCAATATCCTGGTTTCAT+TGG | - | chr6.2:72616240-72616259 | None:intergenic | 35.0% | |
TCTCTGATGGAGAATCTATT+AGG | + | chr6.2:72615096-72615115 | MS.gene79782:CDS | 35.0% | |
TGAAGAAAATGAGCAGAAAC+TGG | + | chr6.2:72615614-72615633 | MS.gene79782:intron | 35.0% | |
TTGTCCATTCTACTCATTTG+CGG | + | chr6.2:72616351-72616370 | MS.gene79782:intron | 35.0% | |
TTTATGGTTCCAATGAAACC+AGG | + | chr6.2:72616228-72616247 | MS.gene79782:intron | 35.0% | |
! | ATTCCACATTTTGCAGTCTA+AGG | - | chr6.2:72617025-72617044 | None:intergenic | 35.0% |
! | CTTAACCAGTTTTTCCCTTT+AGG | - | chr6.2:72616393-72616412 | None:intergenic | 35.0% |
!! | ATTGATCTTCCTGGTTCTAA+AGG | + | chr6.2:72617074-72617093 | MS.gene79782:CDS | 35.0% |
AAATGTGGAATGTGGTGAAG+TGG | + | chr6.2:72617034-72617053 | MS.gene79782:CDS | 40.0% | |
AAGACCGCAAATGAGTAGAA+TGG | - | chr6.2:72616358-72616377 | None:intergenic | 40.0% | |
AAGTGGAAATCAGTTTGCAC+TGG | + | chr6.2:72617051-72617070 | MS.gene79782:CDS | 40.0% | |
ACCAATGTAACTGGGTGATT+AGG | - | chr6.2:72615929-72615948 | None:intergenic | 40.0% | |
AGAATCTATTAGGCCTTCTG+AGG | + | chr6.2:72615106-72615125 | MS.gene79782:CDS | 40.0% | |
AGACTGCAAAATGTGGAATG+TGG | + | chr6.2:72617026-72617045 | MS.gene79782:CDS | 40.0% | |
AGATGACAAAATGGGAGATG+CGG | + | chr6.2:72616842-72616861 | MS.gene79782:CDS | 40.0% | |
GAATCTATTAGGCCTTCTGA+GGG | + | chr6.2:72615107-72615126 | MS.gene79782:CDS | 40.0% | |
GATCCTTAGACTGCAAAATG+TGG | + | chr6.2:72617019-72617038 | MS.gene79782:CDS | 40.0% | |
GCAGTCTAAGGATCATATCT+TGG | - | chr6.2:72617013-72617032 | None:intergenic | 40.0% | |
TCCTAATCACCCAGTTACAT+TGG | + | chr6.2:72615925-72615944 | MS.gene79782:CDS | 40.0% | |
TGGTTGTATCCGCTTGATTA+CGG | - | chr6.2:72616931-72616950 | None:intergenic | 40.0% | |
TGGTTTGAAAGGTTTGCATG+AGG | - | chr6.2:72616299-72616318 | None:intergenic | 40.0% | |
TTCTTTAACGAGTGCTCCAA+GGG | + | chr6.2:72616528-72616547 | MS.gene79782:intron | 40.0% | |
TTGTACGACTCTCAATATCC+TGG | - | chr6.2:72616249-72616268 | None:intergenic | 40.0% | |
TTTCTTTAACGAGTGCTCCA+AGG | + | chr6.2:72616527-72616546 | MS.gene79782:intron | 40.0% | |
!! | ATTTGCGGTCTTGATAACGA+GGG | + | chr6.2:72616366-72616385 | MS.gene79782:intron | 40.0% |
!! | TTGATAACGAGGGTCCTAAA+GGG | + | chr6.2:72616376-72616395 | MS.gene79782:intron | 40.0% |
AAATACAGCTCTCTTCGGCA+AGG | - | chr6.2:72616968-72616987 | None:intergenic | 45.0% | |
AATGTAACCGGCCTTGCAAA+CGG | + | chr6.2:72616903-72616922 | MS.gene79782:CDS | 45.0% | |
AGGGTCCTAAAGGGAAAAAC+TGG | + | chr6.2:72616385-72616404 | MS.gene79782:intron | 45.0% | |
CATCCTCAAGGCTTCTATGT+AGG | - | chr6.2:72616883-72616902 | None:intergenic | 45.0% | |
GCCTTGAGGATGAATGTAAC+CGG | + | chr6.2:72616891-72616910 | MS.gene79782:CDS | 45.0% | |
GGCAGTGTATCAGAACATCT+CGG | - | chr6.2:72616570-72616589 | None:intergenic | 45.0% | |
GTAAGGTCTTCATTCCACTC+AGG | - | chr6.2:72615890-72615909 | None:intergenic | 45.0% | |
TACGAACATCACGAACAGCA+AGG | - | chr6.2:72615155-72615174 | None:intergenic | 45.0% | |
TTGCACTGGATTGATCTTCC+TGG | + | chr6.2:72617065-72617084 | MS.gene79782:CDS | 45.0% | |
!! | CATTTGCGGTCTTGATAACG+AGG | + | chr6.2:72616365-72616384 | MS.gene79782:intron | 45.0% |
!! | CTTGATAACGAGGGTCCTAA+AGG | + | chr6.2:72616375-72616394 | MS.gene79782:intron | 45.0% |
!! | TAAAATAAAATAAAATAAAG+TGG | - | chr6.2:72615390-72615409 | None:intergenic | 5.0% |
AAAGGTTTGCATGAGGCCAC+AGG | - | chr6.2:72616292-72616311 | None:intergenic | 50.0% | |
AGATGCGGTATTTGACGCCT+CGG | + | chr6.2:72616857-72616876 | MS.gene79782:CDS | 50.0% | |
CAAACGGCACCGTAATCAAG+CGG | + | chr6.2:72616919-72616938 | MS.gene79782:CDS | 50.0% | |
GCCGGTTACATTCATCCTCA+AGG | - | chr6.2:72616895-72616914 | None:intergenic | 50.0% | |
!! | TGATTACGGTGCCGTTTGCA+AGG | - | chr6.2:72616917-72616936 | None:intergenic | 50.0% |
CAAGGCTTCTATGTAGGCCG+AGG | - | chr6.2:72616877-72616896 | None:intergenic | 55.0% | |
CGGCCTACATAGAAGCCTTG+AGG | + | chr6.2:72616877-72616896 | MS.gene79782:CDS | 55.0% | |
GCAAGGCAGTTGTGCTTGCT+TGG | - | chr6.2:72616951-72616970 | None:intergenic | 55.0% | |
GCTTCACACGAACCCTCAGA+AGG | - | chr6.2:72615122-72615141 | None:intergenic | 55.0% | |
CTGAGGGTTCGTGTGAAGCG+TGG | + | chr6.2:72615123-72615142 | MS.gene79782:CDS | 60.0% | |
!! | TACGGTGCCGTTTGCAAGGC+CGG | - | chr6.2:72616913-72616932 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.2 | gene | 72615066 | 72617103 | 72615066 | ID=MS.gene79782 |
chr6.2 | mRNA | 72615066 | 72617103 | 72615066 | ID=MS.gene79782.t1;Parent=MS.gene79782 |
chr6.2 | exon | 72615066 | 72615212 | 72615066 | ID=MS.gene79782.t1.exon1;Parent=MS.gene79782.t1 |
chr6.2 | CDS | 72615066 | 72615212 | 72615066 | ID=cds.MS.gene79782.t1;Parent=MS.gene79782.t1 |
chr6.2 | exon | 72615851 | 72615946 | 72615851 | ID=MS.gene79782.t1.exon2;Parent=MS.gene79782.t1 |
chr6.2 | CDS | 72615851 | 72615946 | 72615851 | ID=cds.MS.gene79782.t1;Parent=MS.gene79782.t1 |
chr6.2 | exon | 72616813 | 72617103 | 72616813 | ID=MS.gene79782.t1.exon3;Parent=MS.gene79782.t1 |
chr6.2 | CDS | 72616813 | 72617103 | 72616813 | ID=cds.MS.gene79782.t1;Parent=MS.gene79782.t1 |
Gene Sequence |
Protein sequence |