Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79876.t1 | XP_003601649.1 | 99.1 | 326 | 3 | 0 | 1 | 326 | 1 | 326 | 6.00E-176 | 626.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79876.t1 | Q9LIR9 | 73.6 | 311 | 82 | 0 | 3 | 313 | 4 | 314 | 1.2e-124 | 447.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79876.t1 | G7JA72 | 99.1 | 326 | 3 | 0 | 1 | 326 | 1 | 326 | 4.3e-176 | 626.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene52088 | MS.gene79876 | PPI |
| MS.gene00614 | MS.gene79876 | PPI |
| MS.gene79876 | MS.gene072062 | PPI |
| MS.gene057722 | MS.gene79876 | PPI |
| MS.gene047204 | MS.gene79876 | PPI |
| MS.gene90964 | MS.gene79876 | PPI |
| MS.gene002040 | MS.gene79876 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79876.t1 | MTR_3g083960 | 99.080 | 326 | 3 | 0 | 1 | 326 | 1 | 326 | 0.0 | 660 |
| MS.gene79876.t1 | MTR_8g081650 | 78.882 | 322 | 68 | 0 | 1 | 322 | 1 | 322 | 0.0 | 513 |
| MS.gene79876.t1 | MTR_2g006070 | 70.234 | 299 | 89 | 0 | 2 | 300 | 12 | 310 | 2.04e-152 | 431 |
| MS.gene79876.t1 | MTR_5g090020 | 58.383 | 334 | 130 | 2 | 1 | 325 | 1 | 334 | 2.80e-133 | 383 |
| MS.gene79876.t1 | MTR_8g095060 | 58.466 | 313 | 128 | 2 | 3 | 315 | 1 | 311 | 2.97e-133 | 383 |
| MS.gene79876.t1 | MTR_4g074050 | 57.792 | 308 | 129 | 1 | 1 | 308 | 1 | 307 | 6.55e-133 | 381 |
| MS.gene79876.t1 | MTR_3g097220 | 55.224 | 335 | 138 | 2 | 4 | 326 | 3 | 337 | 1.55e-131 | 378 |
| MS.gene79876.t1 | MTR_3g097220 | 56.832 | 322 | 137 | 2 | 4 | 325 | 3 | 322 | 3.26e-131 | 377 |
| MS.gene79876.t1 | MTR_2g006070 | 69.099 | 233 | 72 | 0 | 2 | 234 | 12 | 244 | 2.60e-109 | 318 |
| MS.gene79876.t1 | MTR_5g090020 | 56.777 | 273 | 110 | 1 | 61 | 325 | 17 | 289 | 2.60e-102 | 303 |
| MS.gene79876.t1 | MTR_2g006070 | 70.745 | 188 | 55 | 0 | 2 | 189 | 12 | 199 | 4.79e-87 | 260 |
| MS.gene79876.t1 | MTR_3g097220 | 52.423 | 227 | 106 | 2 | 99 | 325 | 1 | 225 | 8.87e-82 | 248 |
| MS.gene79876.t1 | MTR_6g033100 | 20.548 | 292 | 216 | 2 | 50 | 325 | 52 | 343 | 1.01e-13 | 72.0 |
| MS.gene79876.t1 | MTR_5g049870 | 45.455 | 77 | 30 | 2 | 240 | 308 | 166 | 238 | 1.19e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79876.t1 | AT1G71900 | 71.380 | 297 | 85 | 0 | 2 | 298 | 14 | 310 | 3.80e-161 | 453 |
| MS.gene79876.t1 | AT1G71900 | 71.380 | 297 | 85 | 0 | 2 | 298 | 14 | 310 | 3.70e-160 | 451 |
| MS.gene79876.t1 | AT1G34470 | 70.370 | 297 | 88 | 0 | 2 | 298 | 14 | 310 | 8.68e-155 | 438 |
| MS.gene79876.t1 | AT4G13800 | 72.381 | 315 | 85 | 1 | 3 | 317 | 4 | 316 | 1.74e-153 | 434 |
| MS.gene79876.t1 | AT4G13800 | 72.381 | 315 | 85 | 1 | 3 | 317 | 4 | 316 | 1.74e-153 | 434 |
| MS.gene79876.t1 | AT4G13800 | 72.381 | 315 | 85 | 1 | 3 | 317 | 4 | 316 | 1.74e-153 | 434 |
| MS.gene79876.t1 | AT4G13800 | 72.381 | 315 | 85 | 1 | 3 | 317 | 4 | 316 | 1.74e-153 | 434 |
| MS.gene79876.t1 | AT3G23870 | 73.633 | 311 | 82 | 0 | 3 | 313 | 4 | 314 | 3.74e-147 | 417 |
| MS.gene79876.t1 | AT3G23870 | 73.633 | 311 | 82 | 0 | 3 | 313 | 4 | 314 | 3.74e-147 | 417 |
| MS.gene79876.t1 | AT3G23870 | 73.633 | 311 | 82 | 0 | 3 | 313 | 4 | 314 | 3.74e-147 | 417 |
| MS.gene79876.t1 | AT3G23870 | 73.633 | 311 | 82 | 0 | 3 | 313 | 4 | 314 | 3.74e-147 | 417 |
| MS.gene79876.t1 | AT4G09640 | 66.049 | 324 | 109 | 1 | 2 | 325 | 14 | 336 | 8.06e-145 | 414 |
| MS.gene79876.t1 | AT2G21120 | 55.385 | 325 | 139 | 2 | 3 | 326 | 1 | 320 | 2.75e-132 | 380 |
| MS.gene79876.t1 | AT4G38730 | 55.590 | 322 | 137 | 1 | 5 | 326 | 3 | 318 | 3.13e-132 | 379 |
| MS.gene79876.t1 | AT4G13800 | 74.144 | 263 | 68 | 0 | 3 | 265 | 4 | 266 | 1.78e-128 | 368 |
| MS.gene79876.t1 | AT4G13800 | 74.144 | 263 | 68 | 0 | 3 | 265 | 4 | 266 | 1.78e-128 | 368 |
| MS.gene79876.t1 | AT3G23870 | 70.925 | 227 | 66 | 0 | 87 | 313 | 8 | 234 | 1.65e-111 | 324 |
| MS.gene79876.t1 | AT4G13800 | 71.610 | 236 | 67 | 0 | 3 | 238 | 4 | 239 | 2.22e-108 | 316 |
| MS.gene79876.t1 | AT4G13800 | 71.610 | 236 | 67 | 0 | 3 | 238 | 4 | 239 | 2.22e-108 | 316 |
| MS.gene79876.t1 | AT4G13800 | 71.610 | 236 | 67 | 0 | 3 | 238 | 4 | 239 | 2.22e-108 | 316 |
| MS.gene79876.t1 | AT4G13800 | 71.610 | 236 | 67 | 0 | 3 | 238 | 4 | 239 | 2.22e-108 | 316 |
| MS.gene79876.t1 | AT3G26670 | 20.446 | 269 | 200 | 2 | 50 | 304 | 50 | 318 | 9.27e-13 | 68.9 |
| MS.gene79876.t1 | AT3G26670 | 20.446 | 269 | 200 | 2 | 50 | 304 | 50 | 318 | 9.27e-13 | 68.9 |
| MS.gene79876.t1 | AT3G26670 | 20.446 | 269 | 200 | 2 | 50 | 304 | 50 | 318 | 9.27e-13 | 68.9 |
| MS.gene79876.t1 | AT3G26670 | 20.446 | 269 | 200 | 2 | 50 | 304 | 50 | 318 | 9.27e-13 | 68.9 |
Find 67 sgRNAs with CRISPR-Local
Find 151 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGCCAGCATAATAATGTTTA+AGG | 0.148866 | 3.1:+65629338 | MS.gene79876:CDS |
| CCTTCACAAAACTAAGGATA+TGG | 0.215788 | 3.1:+65629735 | MS.gene79876:CDS |
| ATATCCTCCGACAACGTTAT+TGG | 0.275140 | 3.1:+65627631 | MS.gene79876:CDS |
| TGCTCACAAGCTTCAAATTT+CGG | 0.287897 | 3.1:-65629833 | None:intergenic |
| TGCCATCCTTGTAACTCCTT+TGG | 0.293323 | 3.1:+65628372 | MS.gene79876:CDS |
| AAAGAGAGATTGCATGTCTT+TGG | 0.311793 | 3.1:+65628525 | MS.gene79876:CDS |
| GCCATCCTTGTAACTCCTTT+GGG | 0.313908 | 3.1:+65628373 | MS.gene79876:CDS |
| CTTCAAATTTCGGATCTATC+TGG | 0.323795 | 3.1:-65629823 | None:intergenic |
| TATTGTATACTCTTGCTTGA+TGG | 0.331593 | 3.1:+65628815 | MS.gene79876:CDS |
| CAACGTTATTGGTCTTTGTT+TGG | 0.334057 | 3.1:+65627642 | MS.gene79876:CDS |
| CATTATTATGCTGGCGATGA+TGG | 0.391168 | 3.1:-65629331 | None:intergenic |
| TTCTCTCACGGGCTCAATTA+CGG | 0.396382 | 3.1:+65628917 | MS.gene79876:CDS |
| TTCATTCTGTCAAGGAAGTA+TGG | 0.396932 | 3.1:+65628619 | MS.gene79876:CDS |
| TTGCATGTCTTTGGCGTGCT+TGG | 0.400448 | 3.1:+65628534 | MS.gene79876:CDS |
| GGTGTCTTAGCAGTATTGTT+AGG | 0.405653 | 3.1:-65629802 | None:intergenic |
| GGATGTGCTCTCTGTGTGGT+GGG | 0.414278 | 3.1:+65628555 | MS.gene79876:CDS |
| ACCTGCTCTATTCCCATTAG+TGG | 0.423488 | 3.1:-65627731 | None:intergenic |
| TACCTTAAACATTATTATGC+TGG | 0.433334 | 3.1:-65629340 | None:intergenic |
| ACCCATCTGGTTGTTTATGT+TGG | 0.437188 | 3.1:+65628888 | MS.gene79876:CDS |
| GCTTTGAAACTTTCATTTGA+AGG | 0.443933 | 3.1:+65629070 | MS.gene79876:CDS |
| CTTCACAAAACTAAGGATAT+GGG | 0.475464 | 3.1:+65629736 | MS.gene79876:CDS |
| TTCTTTACATTAGTTGTGAT+AGG | 0.477243 | 3.1:+65629124 | MS.gene79876:CDS |
| CTCTTGCTTGATGGTGGCGC+TGG | 0.486099 | 3.1:+65628824 | MS.gene79876:CDS |
| TCAAGTAGTTGATTTGCAAA+AGG | 0.495628 | 3.1:-65629153 | None:intergenic |
| TGTTGGAATATGTTCTCTCA+CGG | 0.496357 | 3.1:+65628905 | MS.gene79876:CDS |
| TGATATCACATTAGTGTTGA+AGG | 0.498124 | 3.1:-65629277 | None:intergenic |
| TATGAACCACGGTGGTGGGC+TGG | 0.499044 | 3.1:+65627879 | MS.gene79876:CDS |
| TGGATGTGCTCTCTGTGTGG+TGG | 0.507876 | 3.1:+65628554 | MS.gene79876:CDS |
| ATTTGTATGAACCACGGTGG+TGG | 0.514111 | 3.1:+65627874 | MS.gene79876:CDS |
| CTTTGAAACTTTCATTTGAA+GGG | 0.519723 | 3.1:+65629071 | MS.gene79876:CDS |
| ATTCCTCCTTCACAAAACTA+AGG | 0.523907 | 3.1:+65629729 | MS.gene79876:CDS |
| GCCACTAATGGGAATAGAGC+AGG | 0.531481 | 3.1:+65627730 | MS.gene79876:CDS |
| GTAAACATGACATAGTAAAC+CGG | 0.531823 | 3.1:-65629300 | None:intergenic |
| GAGTTATGGACAGACCCATC+TGG | 0.542858 | 3.1:+65628875 | MS.gene79876:CDS |
| AAAGGAGTTACAAGGATGGC+AGG | 0.547456 | 3.1:-65628370 | None:intergenic |
| TGGCAACTTGCTACAGAACC+AGG | 0.550915 | 3.1:+65628639 | MS.gene79876:CDS |
| ACAAAGACCAATAACGTTGT+CGG | 0.553789 | 3.1:-65627638 | None:intergenic |
| GAAGAAAGAGAGATTTCTGC+GGG | 0.557974 | 3.1:-65629766 | None:intergenic |
| CAGATTGTGACGGAGTTGTG+TGG | 0.559234 | 3.1:+65629682 | MS.gene79876:CDS |
| TGTATACTCTTGCTTGATGG+TGG | 0.561771 | 3.1:+65628818 | MS.gene79876:CDS |
| GTTGGAATATGTTCTCTCAC+GGG | 0.563829 | 3.1:+65628906 | MS.gene79876:CDS |
| TTCCAACATAAACAACCAGA+TGG | 0.564436 | 3.1:-65628890 | None:intergenic |
| GTTATGTGTGTCAAAGCAGT+AGG | 0.569363 | 3.1:+65629043 | MS.gene79876:CDS |
| AAGCTCCCAAAGGAGTTACA+AGG | 0.569548 | 3.1:-65628378 | None:intergenic |
| GATGTGCTCTCTGTGTGGTG+GGG | 0.576392 | 3.1:+65628556 | MS.gene79876:CDS |
| CAACACTAATGTGATATCAC+CGG | 0.577689 | 3.1:+65629281 | MS.gene79876:CDS |
| AATTTATTTACTTTGAGACA+TGG | 0.581957 | 3.1:+65629101 | MS.gene79876:CDS |
| TCTTAGCAGTATTGTTAGGA+CGG | 0.583449 | 3.1:-65629798 | None:intergenic |
| TTTGTATGAACCACGGTGGT+GGG | 0.606218 | 3.1:+65627875 | MS.gene79876:CDS |
| AGATTGTGACGGAGTTGTGT+GGG | 0.607230 | 3.1:+65629683 | MS.gene79876:CDS |
| TTTCTTCACAGTGATTGTTG+GGG | 0.624149 | 3.1:+65628315 | MS.gene79876:intron |
| GCAAATCAACTACTTGAACA+AGG | 0.627635 | 3.1:+65629159 | MS.gene79876:CDS |
| GAGAGTCATTCATTCTGTCA+AGG | 0.628128 | 3.1:+65628611 | MS.gene79876:CDS |
| TCCAACATAAACAACCAGAT+GGG | 0.633993 | 3.1:-65628889 | None:intergenic |
| GCTGGCGATGATGGTAAATG+AGG | 0.637214 | 3.1:-65629322 | None:intergenic |
| TGAAGAAAGAGAGATTTCTG+CGG | 0.649523 | 3.1:-65629767 | None:intergenic |
| GCAGTATTGTTAGGACGGTG+TGG | 0.650836 | 3.1:-65629793 | None:intergenic |
| CAAATATGAATGCCCTCCTG+TGG | 0.653211 | 3.1:-65627856 | None:intergenic |
| ATTCATATTTGTATGAACCA+CGG | 0.657686 | 3.1:+65627868 | MS.gene79876:CDS |
| TCCCAAAGGAGTTACAAGGA+TGG | 0.664654 | 3.1:-65628374 | None:intergenic |
| GCTTGGATGTGCTCTCTGTG+TGG | 0.668530 | 3.1:+65628551 | MS.gene79876:CDS |
| ATGATGCTTAAAGCTCCCAA+AGG | 0.673384 | 3.1:-65628388 | None:intergenic |
| AAGACCAATAACGTTGTCGG+AGG | 0.673692 | 3.1:-65627635 | None:intergenic |
| GAATGAATGACTCTCTCATG+TGG | 0.682284 | 3.1:-65628603 | None:intergenic |
| GTCATTCCAGCCCACCACCG+TGG | 0.686381 | 3.1:-65627885 | None:intergenic |
| AGATGCGTCTCAGATTGTGA+CGG | 0.697608 | 3.1:+65629672 | MS.gene79876:CDS |
| CATATTTGTATGAACCACGG+TGG | 0.737806 | 3.1:+65627871 | MS.gene79876:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGCTTCATAATTAAAAAAAT+GGG | + | chr3.1:65627694-65627713 | MS.gene79876:CDS | 15.0% |
| !! | TAGCTTCATAATTAAAAAAA+TGG | + | chr3.1:65627693-65627712 | MS.gene79876:CDS | 15.0% |
| !! | TGTCTTTATAACTATTATTT+AGG | - | chr3.1:65629605-65629624 | None:intergenic | 15.0% |
| !!! | ATATTATAAATAACTTGTGA+TGG | - | chr3.1:65629398-65629417 | None:intergenic | 15.0% |
| !!! | ATATTTTTTTTTTCTTCATC+TGG | + | chr3.1:65627757-65627776 | MS.gene79876:intron | 15.0% |
| !!! | ATTATTTAGGTTTCAAAAAA+AGG | - | chr3.1:65629592-65629611 | None:intergenic | 15.0% |
| !!! | TATTTTTTTTTTCTTCATCT+GGG | + | chr3.1:65627758-65627777 | MS.gene79876:intron | 15.0% |
| !! | AAATAAATAAACCATCAAGA+CGG | - | chr3.1:65629629-65629648 | None:intergenic | 20.0% |
| !! | CTTAAAAGTTAAAACTCATT+CGG | + | chr3.1:65628100-65628119 | MS.gene79876:intron | 20.0% |
| !!! | AAAATAGTATAAGTTGAACA+TGG | - | chr3.1:65628222-65628241 | None:intergenic | 20.0% |
| !!! | AATTTATTTACTTTGAGACA+TGG | + | chr3.1:65629101-65629120 | MS.gene79876:CDS | 20.0% |
| !!! | AGTTGTTATGTTAGTTTATA+GGG | + | chr3.1:65628057-65628076 | MS.gene79876:intron | 20.0% |
| !!! | GTATGTTTCTTATTTAATCT+GGG | + | chr3.1:65629229-65629248 | MS.gene79876:intron | 20.0% |
| !!! | TAGTTGTTATGTTAGTTTAT+AGG | + | chr3.1:65628056-65628075 | MS.gene79876:intron | 20.0% |
| !!! | TCTTGATGGTTTATTTATTT+TGG | + | chr3.1:65629629-65629648 | MS.gene79876:intron | 20.0% |
| !!! | TGTATGTTTCTTATTTAATC+TGG | + | chr3.1:65629228-65629247 | MS.gene79876:intron | 20.0% |
| !!! | TTAGTAAAGGTTTTAAATCA+TGG | + | chr3.1:65629455-65629474 | MS.gene79876:intron | 20.0% |
| ! | AACCTATATATGCAAAAACT+AGG | - | chr3.1:65629026-65629045 | None:intergenic | 25.0% |
| ! | AAGAAACATACAAAAGAACA+TGG | - | chr3.1:65629220-65629239 | None:intergenic | 25.0% |
| ! | ATACGTTATTATATCTCTCT+AGG | + | chr3.1:65628175-65628194 | MS.gene79876:intron | 25.0% |
| ! | ATTCATATTTGTATGAACCA+CGG | + | chr3.1:65627868-65627887 | MS.gene79876:CDS | 25.0% |
| ! | TACCTTAAACATTATTATGC+TGG | - | chr3.1:65629343-65629362 | None:intergenic | 25.0% |
| ! | TTCTTTACATTAGTTGTGAT+AGG | + | chr3.1:65629124-65629143 | MS.gene79876:CDS | 25.0% |
| !!! | AAGGTTTTAAATCATGGTAA+CGG | + | chr3.1:65629461-65629480 | MS.gene79876:intron | 25.0% |
| !!! | ATCCTAGTTTTTGCATATAT+AGG | + | chr3.1:65629021-65629040 | MS.gene79876:intron | 25.0% |
| !!! | ATGAGTTTTAACTTTTAAGC+AGG | - | chr3.1:65628099-65628118 | None:intergenic | 25.0% |
| !!! | CTCAAAAGTATCATGAATTA+AGG | + | chr3.1:65628968-65628987 | MS.gene79876:intron | 25.0% |
| !!! | CTTTGAAACTTTCATTTGAA+GGG | + | chr3.1:65629071-65629090 | MS.gene79876:CDS | 25.0% |
| !!! | GTACTTTTTGAAGCTTTAAT+TGG | + | chr3.1:65628661-65628680 | MS.gene79876:intron | 25.0% |
| AAGTTATGATGTCTCTACAA+CGG | - | chr3.1:65629553-65629572 | None:intergenic | 30.0% | |
| AGTTTAAGTGAGATGCATTA+TGG | + | chr3.1:65628688-65628707 | MS.gene79876:intron | 30.0% | |
| CTTCACAAAACTAAGGATAT+GGG | + | chr3.1:65629736-65629755 | MS.gene79876:CDS | 30.0% | |
| GTAAACATGACATAGTAAAC+CGG | - | chr3.1:65629303-65629322 | None:intergenic | 30.0% | |
| TATTGTATACTCTTGCTTGA+TGG | + | chr3.1:65628815-65628834 | MS.gene79876:CDS | 30.0% | |
| TCTCTCATGAATGAATGAAT+AGG | + | chr3.1:65628789-65628808 | MS.gene79876:intron | 30.0% | |
| TTAAAAAAGCTGCCACTAAT+GGG | + | chr3.1:65627719-65627738 | MS.gene79876:CDS | 30.0% | |
| TTTGCAATTGGGTTTAGTAA+AGG | + | chr3.1:65629442-65629461 | MS.gene79876:intron | 30.0% | |
| TTTGTTGGCAATTTGCAATT+GGG | + | chr3.1:65629431-65629450 | MS.gene79876:intron | 30.0% | |
| ! | AGGATCTTTAAGTTTGTAGA+AGG | - | chr3.1:65629006-65629025 | None:intergenic | 30.0% |
| ! | GGTTTGTGACAATTTTATCT+GGG | + | chr3.1:65629704-65629723 | MS.gene79876:CDS | 30.0% |
| ! | GTGAGTGATTTTCTATCTTA+TGG | + | chr3.1:65627913-65627932 | MS.gene79876:intron | 30.0% |
| ! | TAACTTTTAAGCAGGAAGTT+CGG | - | chr3.1:65628091-65628110 | None:intergenic | 30.0% |
| ! | TGATATCACATTAGTGTTGA+AGG | - | chr3.1:65629280-65629299 | None:intergenic | 30.0% |
| ! | TTTAATCTGGGATACTATTG+TGG | + | chr3.1:65629241-65629260 | MS.gene79876:intron | 30.0% |
| ! | TTTTCTTCACAGTGATTGTT+GGG | + | chr3.1:65628314-65628333 | MS.gene79876:intron | 30.0% |
| !! | GCTTTGAAACTTTCATTTGA+AGG | + | chr3.1:65629070-65629089 | MS.gene79876:CDS | 30.0% |
| !! | GTTCTAAAGGAATTCATTTC+TGG | + | chr3.1:65628719-65628738 | MS.gene79876:intron | 30.0% |
| !! | TCAAGTAGTTGATTTGCAAA+AGG | - | chr3.1:65629156-65629175 | None:intergenic | 30.0% |
| !! | TTAAAGCTTCAAAAAGTACC+TGG | - | chr3.1:65628660-65628679 | None:intergenic | 30.0% |
| !!! | TATGGTCTTTTTGGTTCTAA+AGG | + | chr3.1:65628706-65628725 | MS.gene79876:intron | 30.0% |
| !!! | TCCTTATTTTCGTTTTTGCA+CGG | + | chr3.1:65628853-65628872 | MS.gene79876:CDS | 30.0% |
| AAAGAGAGATTGCATGTCTT+TGG | + | chr3.1:65628525-65628544 | MS.gene79876:CDS | 35.0% | |
| ACAAAGACCAATAACGTTGT+CGG | - | chr3.1:65627641-65627660 | None:intergenic | 35.0% | |
| ACATCATAACTTTGATGTCG+CGG | + | chr3.1:65629561-65629580 | MS.gene79876:intron | 35.0% | |
| ATTCCTCCTTCACAAAACTA+AGG | + | chr3.1:65629729-65629748 | MS.gene79876:CDS | 35.0% | |
| CAACAATCACTGTGAAGAAA+AGG | - | chr3.1:65628315-65628334 | None:intergenic | 35.0% | |
| CAACACTAATGTGATATCAC+CGG | + | chr3.1:65629281-65629300 | MS.gene79876:CDS | 35.0% | |
| CCTTCACAAAACTAAGGATA+TGG | + | chr3.1:65629735-65629754 | MS.gene79876:CDS | 35.0% | |
| CGCCAGCATAATAATGTTTA+AGG | + | chr3.1:65629338-65629357 | MS.gene79876:CDS | 35.0% | |
| CGGCAATATAACTGTCAATT+AGG | - | chr3.1:65629533-65629552 | None:intergenic | 35.0% | |
| CTACTTGAACAAGGTATGTA+CGG | + | chr3.1:65629168-65629187 | MS.gene79876:intron | 35.0% | |
| CTTAAAAAAGCTGCCACTAA+TGG | + | chr3.1:65627718-65627737 | MS.gene79876:CDS | 35.0% | |
| CTTTGTTGGCAATTTGCAAT+TGG | + | chr3.1:65629430-65629449 | MS.gene79876:intron | 35.0% | |
| GCAAATCAACTACTTGAACA+AGG | + | chr3.1:65629159-65629178 | MS.gene79876:CDS | 35.0% | |
| GCAATGCAATTGAACAAGAT+TGG | - | chr3.1:65627964-65627983 | None:intergenic | 35.0% | |
| TAACGTATATAGCACGTGAT+TGG | - | chr3.1:65628163-65628182 | None:intergenic | 35.0% | |
| TATAAAGACAACCGTCTTGA+TGG | + | chr3.1:65629615-65629634 | MS.gene79876:intron | 35.0% | |
| TCCAACATAAACAACCAGAT+GGG | - | chr3.1:65628892-65628911 | None:intergenic | 35.0% | |
| TCCGTGCAAAAACGAAAATA+AGG | - | chr3.1:65628857-65628876 | None:intergenic | 35.0% | |
| TCTTAGCAGTATTGTTAGGA+CGG | - | chr3.1:65629801-65629820 | None:intergenic | 35.0% | |
| TGAAGAAAGAGAGATTTCTG+CGG | - | chr3.1:65629770-65629789 | None:intergenic | 35.0% | |
| TGGAATATTTCAATGTGCCT+TGG | - | chr3.1:65629378-65629397 | None:intergenic | 35.0% | |
| TGTTGGAATATGTTCTCTCA+CGG | + | chr3.1:65628905-65628924 | MS.gene79876:CDS | 35.0% | |
| TTCATTCTGTCAAGGAAGTA+TGG | + | chr3.1:65628619-65628638 | MS.gene79876:CDS | 35.0% | |
| TTCCAACATAAACAACCAGA+TGG | - | chr3.1:65628893-65628912 | None:intergenic | 35.0% | |
| TTTCTTCACAGTGATTGTTG+GGG | + | chr3.1:65628315-65628334 | MS.gene79876:intron | 35.0% | |
| ! | AACTTTTAAGCAGGAAGTTC+GGG | - | chr3.1:65628090-65628109 | None:intergenic | 35.0% |
| ! | CTGTCTTCAAGCATTTTCAT+TGG | + | chr3.1:65627667-65627686 | MS.gene79876:CDS | 35.0% |
| ! | CTTTTCTTCACAGTGATTGT+TGG | + | chr3.1:65628313-65628332 | MS.gene79876:intron | 35.0% |
| ! | GAGATGCATTATGGTCTTTT+TGG | + | chr3.1:65628697-65628716 | MS.gene79876:intron | 35.0% |
| ! | GGGTTTGTGACAATTTTATC+TGG | + | chr3.1:65629703-65629722 | MS.gene79876:CDS | 35.0% |
| !! | AGGTAACTTGTTACATTCCA+AGG | + | chr3.1:65629358-65629377 | MS.gene79876:intron | 35.0% |
| !! | ATTCAGCCTTGTTTCTCTAA+AGG | - | chr3.1:65629497-65629516 | None:intergenic | 35.0% |
| !! | CAACGTTATTGGTCTTTGTT+TGG | + | chr3.1:65627642-65627661 | MS.gene79876:CDS | 35.0% |
| !! | TTCAGCCTTGTTTCTCTAAA+GGG | - | chr3.1:65629496-65629515 | None:intergenic | 35.0% |
| !!! | ATTTATTTTGGCTGCAGGAA+TGG | + | chr3.1:65629641-65629660 | MS.gene79876:intron | 35.0% |
| !!! | CCATATCCTTAGTTTTGTGA+AGG | - | chr3.1:65629738-65629757 | None:intergenic | 35.0% |
| !!! | GAGCTTTAAGCATCATTTTC+AGG | + | chr3.1:65628395-65628414 | MS.gene79876:CDS | 35.0% |
| !!! | GGTTTATTTATTTTGGCTGC+AGG | + | chr3.1:65629636-65629655 | MS.gene79876:intron | 35.0% |
| !!! | TATCCTTAGTTTTGTGAAGG+AGG | - | chr3.1:65629735-65629754 | None:intergenic | 35.0% |
| !!! | TTTATTTTGGCTGCAGGAAT+GGG | + | chr3.1:65629642-65629661 | MS.gene79876:intron | 35.0% |
| ACCCATCTGGTTGTTTATGT+TGG | + | chr3.1:65628888-65628907 | MS.gene79876:CDS | 40.0% | |
| ATATCCTCCGACAACGTTAT+TGG | + | chr3.1:65627631-65627650 | MS.gene79876:CDS | 40.0% | |
| ATGATGCTTAAAGCTCCCAA+AGG | - | chr3.1:65628391-65628410 | None:intergenic | 40.0% | |
| CATATTTGTATGAACCACGG+TGG | + | chr3.1:65627871-65627890 | MS.gene79876:CDS | 40.0% | |
| CATTATTATGCTGGCGATGA+TGG | - | chr3.1:65629334-65629353 | None:intergenic | 40.0% | |
| GAAGAAAGAGAGATTTCTGC+GGG | - | chr3.1:65629769-65629788 | None:intergenic | 40.0% | |
| GAATGAATGACTCTCTCATG+TGG | - | chr3.1:65628606-65628625 | None:intergenic | 40.0% | |
| GAGAGTCATTCATTCTGTCA+AGG | + | chr3.1:65628611-65628630 | MS.gene79876:CDS | 40.0% | |
| GGAAATTCTGCACAATGAGA+TGG | - | chr3.1:65628201-65628220 | None:intergenic | 40.0% | |
| GGTGTCTTAGCAGTATTGTT+AGG | - | chr3.1:65629805-65629824 | None:intergenic | 40.0% | |
| GTTATGTGTGTCAAAGCAGT+AGG | + | chr3.1:65629043-65629062 | MS.gene79876:CDS | 40.0% | |
| GTTGGAATATGTTCTCTCAC+GGG | + | chr3.1:65628906-65628925 | MS.gene79876:CDS | 40.0% | |
| TACTACTAACATTCGCCTGT+CGG | - | chr3.1:65628038-65628057 | None:intergenic | 40.0% | |
| TGTATACTCTTGCTTGATGG+TGG | + | chr3.1:65628818-65628837 | MS.gene79876:CDS | 40.0% | |
| ! | ACTTTTAAGCAGGAAGTTCG+GGG | - | chr3.1:65628089-65628108 | None:intergenic | 40.0% |
| ! | GTCAACCCTTTAGAGAAACA+AGG | + | chr3.1:65629488-65629507 | MS.gene79876:intron | 40.0% |
| !! | ATCTGCATGTGTAGCTTTGT+TGG | + | chr3.1:65629416-65629435 | MS.gene79876:intron | 40.0% |
| !! | TCTTGATTTTGATCAGCCAC+AGG | + | chr3.1:65627840-65627859 | MS.gene79876:intron | 40.0% |
| !! | TTCGTTTTTGCACGGAGTTA+TGG | + | chr3.1:65628861-65628880 | MS.gene79876:CDS | 40.0% |
| !!! | TGTGCTGTATTTTTTCCGAC+AGG | + | chr3.1:65628020-65628039 | MS.gene79876:intron | 40.0% |
| AAAGGAGTTACAAGGATGGC+AGG | - | chr3.1:65628373-65628392 | None:intergenic | 45.0% | |
| AAGACCAATAACGTTGTCGG+AGG | - | chr3.1:65627638-65627657 | None:intergenic | 45.0% | |
| AAGCTCCCAAAGGAGTTACA+AGG | - | chr3.1:65628381-65628400 | None:intergenic | 45.0% | |
| AAGGTATGTACGGTTGAGTG+TGG | + | chr3.1:65629178-65629197 | MS.gene79876:intron | 45.0% | |
| ACCTGCTCTATTCCCATTAG+TGG | - | chr3.1:65627734-65627753 | None:intergenic | 45.0% | |
| AGATGCGTCTCAGATTGTGA+CGG | + | chr3.1:65629672-65629691 | MS.gene79876:CDS | 45.0% | |
| ATTTGTATGAACCACGGTGG+TGG | + | chr3.1:65627874-65627893 | MS.gene79876:CDS | 45.0% | |
| CAAATATGAATGCCCTCCTG+TGG | - | chr3.1:65627859-65627878 | None:intergenic | 45.0% | |
| GATACTATTGTGGCAGGCTT+TGG | + | chr3.1:65629251-65629270 | MS.gene79876:intron | 45.0% | |
| GCCATCCTTGTAACTCCTTT+GGG | + | chr3.1:65628373-65628392 | MS.gene79876:CDS | 45.0% | |
| TCCCAAAGGAGTTACAAGGA+TGG | - | chr3.1:65628377-65628396 | None:intergenic | 45.0% | |
| TGCCATCCTTGTAACTCCTT+TGG | + | chr3.1:65628372-65628391 | MS.gene79876:CDS | 45.0% | |
| TTCTCTCACGGGCTCAATTA+CGG | + | chr3.1:65628917-65628936 | MS.gene79876:CDS | 45.0% | |
| TTTGTATGAACCACGGTGGT+GGG | + | chr3.1:65627875-65627894 | MS.gene79876:CDS | 45.0% | |
| ! | AGATTGTGACGGAGTTGTGT+GGG | + | chr3.1:65629683-65629702 | MS.gene79876:CDS | 45.0% |
| ! | ATCTGGGATACTATTGTGGC+AGG | + | chr3.1:65629245-65629264 | MS.gene79876:intron | 45.0% |
| ! | GTTTCTCTAAAGGGTTGACG+CGG | - | chr3.1:65629487-65629506 | None:intergenic | 45.0% |
| !! | GATTTTGATCAGCCACAGGA+GGG | + | chr3.1:65627844-65627863 | MS.gene79876:intron | 45.0% |
| !! | TGATTTTGATCAGCCACAGG+AGG | + | chr3.1:65627843-65627862 | MS.gene79876:intron | 45.0% |
| GAGTTATGGACAGACCCATC+TGG | + | chr3.1:65628875-65628894 | MS.gene79876:CDS | 50.0% | |
| GCAGTATTGTTAGGACGGTG+TGG | - | chr3.1:65629796-65629815 | None:intergenic | 50.0% | |
| GCCAACGGAACTACCTATGT+GGG | + | chr3.1:65628136-65628155 | MS.gene79876:intron | 50.0% | |
| GCCACTAATGGGAATAGAGC+AGG | + | chr3.1:65627730-65627749 | MS.gene79876:CDS | 50.0% | |
| TCCCACATAGGTAGTTCCGT+TGG | - | chr3.1:65628140-65628159 | None:intergenic | 50.0% | |
| TGTACGGTTGAGTGTGGAAG+TGG | + | chr3.1:65629184-65629203 | MS.gene79876:intron | 50.0% | |
| TTGCATGTCTTTGGCGTGCT+TGG | + | chr3.1:65628534-65628553 | MS.gene79876:CDS | 50.0% | |
| ! | CAGATTGTGACGGAGTTGTG+TGG | + | chr3.1:65629682-65629701 | MS.gene79876:CDS | 50.0% |
| ! | GCTGGCGATGATGGTAAATG+AGG | - | chr3.1:65629325-65629344 | None:intergenic | 50.0% |
| !! | TGGCAACTTGCTACAGAACC+AGG | + | chr3.1:65628639-65628658 | MS.gene79876:CDS | 50.0% |
| AGTTCCGTTGGCGAGCTAAG+AGG | - | chr3.1:65628128-65628147 | None:intergenic | 55.0% | |
| CGCCAACGGAACTACCTATG+TGG | + | chr3.1:65628135-65628154 | MS.gene79876:intron | 55.0% | |
| GATGTGCTCTCTGTGTGGTG+GGG | + | chr3.1:65628556-65628575 | MS.gene79876:CDS | 55.0% | |
| GCTTGGATGTGCTCTCTGTG+TGG | + | chr3.1:65628551-65628570 | MS.gene79876:CDS | 55.0% | |
| GGATGTGCTCTCTGTGTGGT+GGG | + | chr3.1:65628555-65628574 | MS.gene79876:CDS | 55.0% | |
| GGTACCTCTTAGCTCGCCAA+CGG | + | chr3.1:65628121-65628140 | MS.gene79876:intron | 55.0% | |
| TGGATGTGCTCTCTGTGTGG+TGG | + | chr3.1:65628554-65628573 | MS.gene79876:CDS | 55.0% | |
| ! | GCACGTGATTGGTCCCACAT+AGG | - | chr3.1:65628152-65628171 | None:intergenic | 55.0% |
| !! | CTCTTGCTTGATGGTGGCGC+TGG | + | chr3.1:65628824-65628843 | MS.gene79876:CDS | 60.0% |
| !! | TATGAACCACGGTGGTGGGC+TGG | + | chr3.1:65627879-65627898 | MS.gene79876:CDS | 60.0% |
| GTCATTCCAGCCCACCACCG+TGG | - | chr3.1:65627888-65627907 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 65627625 | 65629843 | 65627625 | ID=MS.gene79876 |
| chr3.1 | mRNA | 65627625 | 65629843 | 65627625 | ID=MS.gene79876.t1;Parent=MS.gene79876 |
| chr3.1 | exon | 65627625 | 65627751 | 65627625 | ID=MS.gene79876.t1.exon1;Parent=MS.gene79876.t1 |
| chr3.1 | CDS | 65627625 | 65627751 | 65627625 | ID=cds.MS.gene79876.t1;Parent=MS.gene79876.t1 |
| chr3.1 | exon | 65627856 | 65627912 | 65627856 | ID=MS.gene79876.t1.exon2;Parent=MS.gene79876.t1 |
| chr3.1 | CDS | 65627856 | 65627912 | 65627856 | ID=cds.MS.gene79876.t1;Parent=MS.gene79876.t1 |
| chr3.1 | exon | 65628326 | 65628416 | 65628326 | ID=MS.gene79876.t1.exon3;Parent=MS.gene79876.t1 |
| chr3.1 | CDS | 65628326 | 65628416 | 65628326 | ID=cds.MS.gene79876.t1;Parent=MS.gene79876.t1 |
| chr3.1 | exon | 65628500 | 65628660 | 65628500 | ID=MS.gene79876.t1.exon4;Parent=MS.gene79876.t1 |
| chr3.1 | CDS | 65628500 | 65628660 | 65628500 | ID=cds.MS.gene79876.t1;Parent=MS.gene79876.t1 |
| chr3.1 | exon | 65628811 | 65628938 | 65628811 | ID=MS.gene79876.t1.exon5;Parent=MS.gene79876.t1 |
| chr3.1 | CDS | 65628811 | 65628938 | 65628811 | ID=cds.MS.gene79876.t1;Parent=MS.gene79876.t1 |
| chr3.1 | exon | 65629043 | 65629180 | 65629043 | ID=MS.gene79876.t1.exon6;Parent=MS.gene79876.t1 |
| chr3.1 | CDS | 65629043 | 65629180 | 65629043 | ID=cds.MS.gene79876.t1;Parent=MS.gene79876.t1 |
| chr3.1 | exon | 65629267 | 65629359 | 65629267 | ID=MS.gene79876.t1.exon7;Parent=MS.gene79876.t1 |
| chr3.1 | CDS | 65629267 | 65629359 | 65629267 | ID=cds.MS.gene79876.t1;Parent=MS.gene79876.t1 |
| chr3.1 | exon | 65629658 | 65629843 | 65629658 | ID=MS.gene79876.t1.exon8;Parent=MS.gene79876.t1 |
| chr3.1 | CDS | 65629658 | 65629843 | 65629658 | ID=cds.MS.gene79876.t1;Parent=MS.gene79876.t1 |
| Gene Sequence |
| Protein sequence |
