Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene81045.t1 | XP_003627464.1 | 96.3 | 241 | 8 | 1 | 1 | 240 | 1 | 241 | 1.10E-126 | 462.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene81045.t1 | Q9SHI7 | 73.8 | 240 | 60 | 1 | 1 | 240 | 1 | 237 | 9.5e-95 | 347.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene81045.t1 | B7FML7 | 96.3 | 241 | 8 | 1 | 1 | 240 | 1 | 241 | 8.0e-127 | 462.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene81045 | MS.gene72831 | PPI |
MS.gene30950 | MS.gene81045 | PPI |
MS.gene84986 | MS.gene81045 | PPI |
MS.gene31164 | MS.gene81045 | PPI |
MS.gene052128 | MS.gene81045 | PPI |
MS.gene028080 | MS.gene81045 | PPI |
MS.gene81045 | MS.gene070084 | PPI |
MS.gene028078 | MS.gene81045 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene81045.t1 | MTR_8g023380 | 97.095 | 241 | 6 | 1 | 1 | 240 | 1 | 241 | 6.38e-178 | 488 |
MS.gene81045.t1 | MTR_4g121960 | 34.637 | 179 | 112 | 3 | 6 | 182 | 11 | 186 | 1.50e-33 | 123 |
MS.gene81045.t1 | MTR_8g071040 | 34.188 | 117 | 68 | 3 | 8 | 120 | 4 | 115 | 5.42e-17 | 75.5 |
MS.gene81045.t1 | MTR_1g021150 | 34.188 | 117 | 68 | 3 | 8 | 120 | 4 | 115 | 6.77e-16 | 72.8 |
MS.gene81045.t1 | MTR_3g062450 | 32.479 | 117 | 70 | 3 | 8 | 120 | 4 | 115 | 1.00e-15 | 72.4 |
MS.gene81045.t1 | MTR_5g075580 | 32.479 | 117 | 70 | 3 | 8 | 120 | 4 | 115 | 1.08e-15 | 72.0 |
MS.gene81045.t1 | MTR_8g468530 | 31.092 | 119 | 73 | 3 | 8 | 122 | 23 | 136 | 1.12e-15 | 72.8 |
MS.gene81045.t1 | MTR_4g108080 | 31.092 | 119 | 73 | 3 | 8 | 122 | 7 | 120 | 1.86e-15 | 71.6 |
MS.gene81045.t1 | MTR_7g116940 | 32.479 | 117 | 70 | 3 | 8 | 120 | 4 | 115 | 2.03e-15 | 71.2 |
MS.gene81045.t1 | MTR_4g073240 | 31.624 | 117 | 71 | 3 | 8 | 120 | 4 | 115 | 2.49e-15 | 71.2 |
MS.gene81045.t1 | MTR_7g116940 | 33.333 | 111 | 65 | 3 | 8 | 114 | 4 | 109 | 1.44e-13 | 65.9 |
MS.gene81045.t1 | MTR_4g108080 | 31.481 | 108 | 65 | 3 | 8 | 111 | 7 | 109 | 4.35e-13 | 64.3 |
MS.gene81045.t1 | MTR_7g116940 | 30.973 | 113 | 69 | 3 | 8 | 116 | 4 | 111 | 4.90e-13 | 65.1 |
MS.gene81045.t1 | MTR_8g085690 | 28.571 | 126 | 73 | 3 | 8 | 125 | 25 | 141 | 1.01e-12 | 64.7 |
MS.gene81045.t1 | MTR_3g110110 | 29.600 | 125 | 78 | 4 | 4 | 122 | 2 | 122 | 9.82e-12 | 61.6 |
MS.gene81045.t1 | MTR_1g021150 | 33.673 | 98 | 56 | 3 | 27 | 120 | 31 | 123 | 1.60e-11 | 61.2 |
MS.gene81045.t1 | MTR_5g009020 | 33.621 | 116 | 68 | 3 | 4 | 115 | 31 | 141 | 3.32e-11 | 60.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene81045.t1 | AT1G17280 | 77.083 | 240 | 52 | 2 | 1 | 240 | 1 | 237 | 1.29e-138 | 389 |
MS.gene81045.t1 | AT1G17280 | 77.083 | 240 | 52 | 2 | 1 | 240 | 1 | 237 | 1.29e-138 | 389 |
MS.gene81045.t1 | AT1G17280 | 77.083 | 240 | 52 | 2 | 1 | 240 | 1 | 237 | 1.29e-138 | 389 |
MS.gene81045.t1 | AT1G17280 | 77.083 | 240 | 52 | 2 | 1 | 240 | 1 | 237 | 1.29e-138 | 389 |
MS.gene81045.t1 | AT1G17280 | 77.083 | 240 | 52 | 2 | 1 | 240 | 1 | 237 | 1.29e-138 | 389 |
MS.gene81045.t1 | AT1G17280 | 77.083 | 240 | 52 | 2 | 1 | 240 | 1 | 237 | 1.29e-138 | 389 |
MS.gene81045.t1 | AT1G17280 | 77.083 | 240 | 52 | 2 | 1 | 240 | 1 | 237 | 1.29e-138 | 389 |
MS.gene81045.t1 | AT1G17280 | 77.083 | 240 | 52 | 2 | 1 | 240 | 1 | 237 | 1.29e-138 | 389 |
MS.gene81045.t1 | AT5G50430 | 74.180 | 244 | 58 | 2 | 1 | 240 | 1 | 243 | 2.04e-136 | 383 |
MS.gene81045.t1 | AT5G50430 | 74.180 | 244 | 58 | 2 | 1 | 240 | 1 | 243 | 2.04e-136 | 383 |
MS.gene81045.t1 | AT1G17280 | 75.203 | 246 | 52 | 3 | 1 | 240 | 1 | 243 | 3.61e-136 | 382 |
MS.gene81045.t1 | AT5G50430 | 68.852 | 244 | 58 | 3 | 1 | 240 | 1 | 230 | 1.48e-121 | 345 |
MS.gene81045.t1 | AT3G17000 | 41.912 | 136 | 76 | 2 | 6 | 139 | 12 | 146 | 1.29e-33 | 123 |
MS.gene81045.t1 | AT5G56150 | 34.188 | 117 | 68 | 3 | 8 | 120 | 4 | 115 | 5.79e-17 | 75.5 |
MS.gene81045.t1 | AT3G08690 | 34.188 | 117 | 68 | 3 | 8 | 120 | 4 | 115 | 3.54e-16 | 73.6 |
MS.gene81045.t1 | AT3G08690 | 34.188 | 117 | 68 | 3 | 8 | 120 | 4 | 115 | 3.54e-16 | 73.6 |
MS.gene81045.t1 | AT4G27960 | 33.333 | 117 | 69 | 3 | 8 | 120 | 4 | 115 | 6.00e-16 | 72.8 |
MS.gene81045.t1 | AT1G64230 | 33.333 | 117 | 69 | 3 | 8 | 120 | 4 | 115 | 6.46e-16 | 72.8 |
MS.gene81045.t1 | AT1G64230 | 33.333 | 117 | 69 | 3 | 8 | 120 | 4 | 115 | 6.46e-16 | 72.8 |
MS.gene81045.t1 | AT5G41700 | 33.333 | 117 | 69 | 3 | 8 | 120 | 4 | 115 | 9.98e-16 | 72.4 |
MS.gene81045.t1 | AT5G41700 | 33.333 | 117 | 69 | 3 | 8 | 120 | 4 | 115 | 9.98e-16 | 72.4 |
MS.gene81045.t1 | AT5G41700 | 33.333 | 117 | 69 | 3 | 8 | 120 | 4 | 115 | 9.98e-16 | 72.4 |
MS.gene81045.t1 | AT2G02760 | 31.092 | 119 | 73 | 3 | 8 | 122 | 7 | 120 | 1.01e-15 | 72.4 |
MS.gene81045.t1 | AT2G02760 | 31.092 | 119 | 73 | 3 | 8 | 122 | 7 | 120 | 1.01e-15 | 72.4 |
MS.gene81045.t1 | AT2G02760 | 31.092 | 119 | 73 | 3 | 8 | 122 | 7 | 120 | 1.01e-15 | 72.4 |
MS.gene81045.t1 | AT2G02760 | 31.092 | 119 | 73 | 3 | 8 | 122 | 7 | 120 | 1.01e-15 | 72.4 |
MS.gene81045.t1 | AT1G14400 | 31.092 | 119 | 73 | 3 | 8 | 122 | 7 | 120 | 1.14e-15 | 72.4 |
MS.gene81045.t1 | AT1G14400 | 31.092 | 119 | 73 | 3 | 8 | 122 | 7 | 120 | 1.14e-15 | 72.4 |
MS.gene81045.t1 | AT4G27960 | 33.333 | 117 | 69 | 3 | 8 | 120 | 34 | 145 | 1.59e-15 | 72.4 |
MS.gene81045.t1 | AT5G41700 | 34.746 | 118 | 67 | 4 | 8 | 120 | 4 | 116 | 1.96e-15 | 71.6 |
MS.gene81045.t1 | AT5G53300 | 32.479 | 117 | 70 | 3 | 8 | 120 | 4 | 115 | 2.19e-15 | 71.2 |
MS.gene81045.t1 | AT5G53300 | 32.479 | 117 | 70 | 3 | 8 | 120 | 4 | 115 | 2.19e-15 | 71.2 |
MS.gene81045.t1 | AT5G53300 | 32.479 | 117 | 70 | 3 | 8 | 120 | 4 | 115 | 2.19e-15 | 71.2 |
MS.gene81045.t1 | AT5G62540 | 31.061 | 132 | 78 | 4 | 8 | 135 | 7 | 129 | 1.20e-14 | 69.3 |
MS.gene81045.t1 | AT5G56150 | 33.929 | 112 | 64 | 4 | 8 | 115 | 4 | 109 | 1.88e-14 | 67.8 |
MS.gene81045.t1 | AT2G16740 | 30.769 | 117 | 72 | 3 | 8 | 120 | 4 | 115 | 3.08e-14 | 68.2 |
MS.gene81045.t1 | AT1G64230 | 30.000 | 120 | 71 | 4 | 5 | 120 | 47 | 157 | 1.47e-13 | 67.4 |
MS.gene81045.t1 | AT1G64230 | 30.000 | 120 | 71 | 4 | 5 | 120 | 47 | 157 | 1.47e-13 | 67.4 |
MS.gene81045.t1 | AT5G41700 | 33.654 | 104 | 60 | 3 | 8 | 107 | 4 | 102 | 3.32e-13 | 65.5 |
MS.gene81045.t1 | AT1G64230 | 30.952 | 126 | 69 | 4 | 8 | 120 | 4 | 124 | 4.40e-13 | 65.5 |
MS.gene81045.t1 | AT3G08700 | 31.356 | 118 | 71 | 4 | 8 | 120 | 4 | 116 | 5.85e-13 | 64.7 |
MS.gene81045.t1 | AT3G08700 | 31.356 | 118 | 71 | 4 | 8 | 120 | 4 | 116 | 5.85e-13 | 64.7 |
MS.gene81045.t1 | AT5G53300 | 32.692 | 104 | 61 | 3 | 8 | 107 | 4 | 102 | 1.87e-12 | 62.4 |
MS.gene81045.t1 | AT1G36340 | 30.841 | 107 | 68 | 3 | 3 | 107 | 6 | 108 | 2.70e-12 | 63.2 |
MS.gene81045.t1 | AT1G36340 | 30.841 | 107 | 68 | 3 | 3 | 107 | 6 | 108 | 2.70e-12 | 63.2 |
MS.gene81045.t1 | AT5G25760 | 28.800 | 125 | 79 | 4 | 4 | 122 | 2 | 122 | 2.94e-11 | 60.5 |
MS.gene81045.t1 | AT5G25760 | 28.800 | 125 | 79 | 4 | 4 | 122 | 2 | 122 | 2.94e-11 | 60.5 |
MS.gene81045.t1 | AT3G13550 | 28.319 | 113 | 80 | 1 | 8 | 120 | 39 | 150 | 8.23e-11 | 59.3 |
Find 66 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CACATTGGATTCCAACTTTC+AGG | 0.160053 | 8.4:+71516510 | None:intergenic |
TTATTACTCTTCTCCATCTT+TGG | 0.164344 | 8.4:-71515247 | MS.gene81045:CDS |
CTCCATCTTTGGGGTTGTTA+TGG | 0.233457 | 8.4:-71515236 | MS.gene81045:CDS |
GTGAAGGACGGGCCACAATA+TGG | 0.237187 | 8.4:+71517345 | None:intergenic |
TATTACTCTTCTCCATCTTT+GGG | 0.241159 | 8.4:-71515246 | MS.gene81045:CDS |
CTGATTCCAGGAGGTTTATA+AGG | 0.284681 | 8.4:+71516783 | None:intergenic |
TAAAAGTCCGAGGTCTGTTT+TGG | 0.291867 | 8.4:-71515368 | MS.gene81045:CDS |
TTCCTTGCAGTGCAACATTC+AGG | 0.294415 | 8.4:-71515486 | MS.gene81045:intron |
TATGAATGCAGCATACTTAC+CGG | 0.344644 | 8.4:-71516308 | MS.gene81045:intron |
TACCGGGCTTCTTTCATTCA+TGG | 0.353871 | 8.4:-71516291 | MS.gene81045:intron |
TGTAGCATGACAACACCTAA+TGG | 0.360595 | 8.4:-71516679 | MS.gene81045:intron |
CTTATAAACCTCCTGGAATC+AGG | 0.389083 | 8.4:-71516782 | MS.gene81045:intron |
CCACAGGAGAAGACTTGAAA+AGG | 0.427561 | 8.4:-71515330 | MS.gene81045:CDS |
ACAAGAAGGCACCTGATTCC+AGG | 0.429061 | 8.4:+71516771 | None:intergenic |
CGGGCCACAATATGGGAAAC+TGG | 0.431636 | 8.4:+71517353 | None:intergenic |
GTTGTACTTCTCCACGTACT+CGG | 0.441817 | 8.4:+71515453 | None:intergenic |
TGTGTCATGAACCGCCCATT+AGG | 0.446261 | 8.4:+71516664 | None:intergenic |
GAAGACTTGAAAAGGGTTGA+GGG | 0.448975 | 8.4:-71515322 | MS.gene81045:CDS |
AGCGAGGGAACACCTTTCTC+AGG | 0.450214 | 8.4:-71516978 | MS.gene81045:intron |
TTGTACTTCTCCACGTACTC+GGG | 0.458106 | 8.4:+71515454 | None:intergenic |
TTGCAGTTCATCCTGAAAGT+TGG | 0.464526 | 8.4:-71516521 | MS.gene81045:intron |
GAAAAGGGTTGAGGGATTGA+AGG | 0.471212 | 8.4:-71515314 | MS.gene81045:CDS |
GAATATCCTTATAAACCTCC+TGG | 0.476050 | 8.4:-71516789 | MS.gene81045:CDS |
GTAGCATGACAACACCTAAT+GGG | 0.487721 | 8.4:-71516678 | MS.gene81045:intron |
TGCCATAACAACCCCAAAGA+TGG | 0.488741 | 8.4:+71515234 | None:intergenic |
TGAAGGACGGGCCACAATAT+GGG | 0.495022 | 8.4:+71517346 | None:intergenic |
AGAAGACTTGAAAAGGGTTG+AGG | 0.497193 | 8.4:-71515323 | MS.gene81045:CDS |
TCATATCTCAGATTACGTAT+TGG | 0.507101 | 8.4:-71517006 | MS.gene81045:intron |
GGAGCCAGTTTCCCATATTG+TGG | 0.524830 | 8.4:-71517357 | MS.gene81045:CDS |
TACACTGCCAGTGGTTGGAC+TGG | 0.524839 | 8.4:+71515636 | None:intergenic |
AGTAATAACATCATCCAGGT+TGG | 0.531733 | 8.4:+71515262 | None:intergenic |
CGCCACTCAAGAATATCACT+TGG | 0.539408 | 8.4:+71517323 | None:intergenic |
GAAAACAAGGATTTCCAACC+TGG | 0.547451 | 8.4:-71515276 | MS.gene81045:CDS |
ATGCATCAAGCGCCTTCAGA+AGG | 0.549944 | 8.4:-71517815 | MS.gene81045:CDS |
AATATCACTTGGTGAAGGAC+GGG | 0.551464 | 8.4:+71517334 | None:intergenic |
ATCCAATGTGGTCTGTATCA+AGG | 0.552283 | 8.4:-71516497 | MS.gene81045:intron |
ATTACTCTTCTCCATCTTTG+GGG | 0.552481 | 8.4:-71515245 | MS.gene81045:CDS |
GAATATCACTTGGTGAAGGA+CGG | 0.560660 | 8.4:+71517333 | None:intergenic |
TAATTTGCTAAACCTGAGAA+AGG | 0.560758 | 8.4:+71516966 | None:intergenic |
GAAGAGTAATAACATCATCC+AGG | 0.567563 | 8.4:+71515258 | None:intergenic |
TACCATGAATGAAAGAAGCC+CGG | 0.570761 | 8.4:+71516289 | None:intergenic |
CACAGGAGAAGACTTGAAAA+GGG | 0.572298 | 8.4:-71515329 | MS.gene81045:CDS |
GAAAACAATGTAGAGTCCAC+AGG | 0.573857 | 8.4:-71515346 | MS.gene81045:CDS |
CAGCCAACGTCATCAGAGAC+TGG | 0.574761 | 8.4:-71515397 | MS.gene81045:CDS |
TTGAGGGATTGAAGGATGCG+AGG | 0.577968 | 8.4:-71515306 | MS.gene81045:CDS |
GTGCTCTATACTCCTTCTGA+AGG | 0.582054 | 8.4:+71517803 | None:intergenic |
ATGAATGCAGCATACTTACC+GGG | 0.582437 | 8.4:-71516307 | MS.gene81045:intron |
ATCTCAGATTACGTATTGGA+AGG | 0.583968 | 8.4:-71517002 | MS.gene81045:intron |
AAAATTCACAGCTGGAGTAG+AGG | 0.587096 | 8.4:+71515208 | None:intergenic |
GTGTTTACACTGCCAGTGGT+TGG | 0.587196 | 8.4:+71515631 | None:intergenic |
GAAGATGTTCCCCGAGTACG+TGG | 0.599484 | 8.4:-71515464 | MS.gene81045:CDS |
TGTACTTCTCCACGTACTCG+GGG | 0.603988 | 8.4:+71515455 | None:intergenic |
ATGGATACCAGTCCAACCAC+TGG | 0.607472 | 8.4:-71515643 | MS.gene81045:CDS |
GACCTTGATACAGACCACAT+TGG | 0.612471 | 8.4:+71516495 | None:intergenic |
TACGTATTGGAAGGAAGCGA+GGG | 0.615267 | 8.4:-71516993 | MS.gene81045:CDS |
GCGAGGAGAAACAGAAAACA+AGG | 0.615922 | 8.4:-71515289 | MS.gene81045:CDS |
TTACGTATTGGAAGGAAGCG+AGG | 0.625291 | 8.4:-71516994 | MS.gene81045:CDS |
AGTAGTGTTTACACTGCCAG+TGG | 0.639725 | 8.4:+71515627 | None:intergenic |
CACCAAGTGATATTCTTGAG+TGG | 0.643937 | 8.4:-71517325 | MS.gene81045:CDS |
TCAAGAATATCACTTGGTGA+AGG | 0.663216 | 8.4:+71517329 | None:intergenic |
GGTTTATAAGGATATTCCTG+AGG | 0.670816 | 8.4:+71516795 | None:intergenic |
CTGAAAGTTGGAATCCAATG+TGG | 0.673790 | 8.4:-71516509 | MS.gene81045:CDS |
TGACCAGTCTCTGATGACGT+TGG | 0.673844 | 8.4:+71515394 | None:intergenic |
GCATGACAACACCTAATGGG+CGG | 0.704176 | 8.4:-71516675 | MS.gene81045:CDS |
CTGGTCAAGATAAAAGTCCG+AGG | 0.710589 | 8.4:-71515378 | MS.gene81045:CDS |
AGAAGGCACCTGATTCCAGG+AGG | 0.717165 | 8.4:+71516774 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AGAAAAAATTAAAACATAAA+AGG | + | chr8.4:71516613-71516632 | None:intergenic | 10.0% |
!! | GAAAAAATTAAAACATAAAA+GGG | + | chr8.4:71516612-71516631 | None:intergenic | 10.0% |
!!! | TAATTTTTTCTTTTGAAATT+TGG | - | chr8.4:71516622-71516641 | MS.gene81045:intron | 10.0% |
!!! | TCACTATTTATTTTTATTTA+TGG | - | chr8.4:71515310-71515329 | MS.gene81045:CDS | 10.0% |
!!! | ACATTTTCCTTTATATTAAA+TGG | + | chr8.4:71517331-71517350 | None:intergenic | 15.0% |
!! | AAAATTAAACTGTAGCAATA+TGG | + | chr8.4:71516482-71516501 | None:intergenic | 20.0% |
!! | AAATTAAACTGTAGCAATAT+GGG | + | chr8.4:71516481-71516500 | None:intergenic | 20.0% |
!! | TTCAAATATTATGATGATCT+AGG | + | chr8.4:71515620-71515639 | None:intergenic | 20.0% |
!!! | AAGGGTTTTTCATAAAAAAA+TGG | - | chr8.4:71517111-71517130 | MS.gene81045:intron | 20.0% |
!!! | AATTTTATTACTGTATTTGC+AGG | - | chr8.4:71515664-71515683 | MS.gene81045:intron | 20.0% |
!!! | CATTATAAAAAGTATGAACT+TGG | + | chr8.4:71516345-71516364 | None:intergenic | 20.0% |
!!! | TTTTTATGAAAAACCCTTTT+CGG | + | chr8.4:71517109-71517128 | None:intergenic | 20.0% |
! | AACAGAATATGTTGAATCTT+TGG | - | chr8.4:71515812-71515831 | MS.gene81045:intron | 25.0% |
! | AAGTTGAGATAGTAATAAAC+TGG | + | chr8.4:71516165-71516184 | None:intergenic | 25.0% |
! | AGTTGAGATAGTAATAAACT+GGG | + | chr8.4:71516164-71516183 | None:intergenic | 25.0% |
! | ATAAATACACAAGAATAGAG+AGG | + | chr8.4:71515399-71515418 | None:intergenic | 25.0% |
! | CATGGTATGTTATTATGTTA+TGG | - | chr8.4:71516769-71516788 | MS.gene81045:intron | 25.0% |
! | CTGAATAATTGTTTCATGAT+TGG | - | chr8.4:71515540-71515559 | MS.gene81045:intron | 25.0% |
! | CTGACAATATAGTAGTATTA+AGG | + | chr8.4:71515923-71515942 | None:intergenic | 25.0% |
! | TATACTTGTACGCATAATAA+CGG | - | chr8.4:71517235-71517254 | MS.gene81045:intron | 25.0% |
! | TCATGCTATAAACATTTCAT+CGG | + | chr8.4:71515456-71515475 | None:intergenic | 25.0% |
! | TCTTGTGTATTTATGTATCT+GGG | - | chr8.4:71515405-71515424 | MS.gene81045:CDS | 25.0% |
! | TGTTGAGCCATTTAATATAA+AGG | - | chr8.4:71517321-71517340 | MS.gene81045:intron | 25.0% |
! | TTCATATTCTAATTGAACTC+TGG | - | chr8.4:71516796-71516815 | MS.gene81045:CDS | 25.0% |
! | TTCTTGTGTATTTATGTATC+TGG | - | chr8.4:71515404-71515423 | MS.gene81045:CDS | 25.0% |
! | TTGTTTGCTCATAAGATATT+GGG | - | chr8.4:71516841-71516860 | MS.gene81045:intron | 25.0% |
! | TTTGTTTGCTCATAAGATAT+TGG | - | chr8.4:71516840-71516859 | MS.gene81045:intron | 25.0% |
!! | AAAAAGAGTGATTTTCCTTA+TGG | + | chr8.4:71516941-71516960 | None:intergenic | 25.0% |
!! | AAGCTCTAATATCCAAAAAT+GGG | - | chr8.4:71515787-71515806 | MS.gene81045:intron | 25.0% |
!! | ATATTCTGTTTTCCCATTTT+TGG | + | chr8.4:71515802-71515821 | None:intergenic | 25.0% |
!! | GTAATTTATTTGTTAGCTAG+TGG | - | chr8.4:71515983-71516002 | MS.gene81045:intron | 25.0% |
!! | TAAAATTGTTGTTCCGAAAA+GGG | - | chr8.4:71517093-71517112 | MS.gene81045:intron | 25.0% |
!! | TAATTGTTTCATGATTGGTT+AGG | - | chr8.4:71515545-71515564 | MS.gene81045:intron | 25.0% |
!!! | AGTTTTGAAGTTCTTTTATG+TGG | - | chr8.4:71516580-71516599 | MS.gene81045:intron | 25.0% |
!!! | CTACAGTTTAATTTTTCTGT+GGG | - | chr8.4:71516487-71516506 | MS.gene81045:intron | 25.0% |
!!! | TACAGTTTAATTTTTCTGTG+GGG | - | chr8.4:71516488-71516507 | MS.gene81045:intron | 25.0% |
!!! | TAGTATTTTGATGTTGTTTG+TGG | - | chr8.4:71515430-71515449 | MS.gene81045:CDS | 25.0% |
!!! | TTTTTAGGTGGATATTACTA+TGG | - | chr8.4:71516211-71516230 | MS.gene81045:intron | 25.0% |
ACTATAGACACACTATTAAG+AGG | + | chr8.4:71515518-71515537 | None:intergenic | 30.0% | |
AGGAGAAAGGAAACATATAT+AGG | + | chr8.4:71515498-71515517 | None:intergenic | 30.0% | |
AGTATGCTGCATTCATAAAT+TGG | + | chr8.4:71516731-71516750 | None:intergenic | 30.0% | |
ATACTACTATATTGTCAGCA+AGG | - | chr8.4:71515925-71515944 | MS.gene81045:intron | 30.0% | |
ATGTTTATAGCATGAATGAC+TGG | - | chr8.4:71515461-71515480 | MS.gene81045:CDS | 30.0% | |
GATTTGTGTTCCACAATTAA+TGG | - | chr8.4:71517529-71517548 | MS.gene81045:intron | 30.0% | |
GTATACAACAAAGACTACTA+TGG | + | chr8.4:71517220-71517239 | None:intergenic | 30.0% | |
TATTACTCTTCTCCATCTTT+GGG | - | chr8.4:71517796-71517815 | MS.gene81045:CDS | 30.0% | |
TCATATCTCAGATTACGTAT+TGG | - | chr8.4:71516036-71516055 | MS.gene81045:intron | 30.0% | |
TGGGTAACTATGATACAAAT+CGG | + | chr8.4:71516462-71516481 | None:intergenic | 30.0% | |
TGTTTATAGCATGAATGACT+GGG | - | chr8.4:71515462-71515481 | MS.gene81045:CDS | 30.0% | |
TTATTACTCTTCTCCATCTT+TGG | - | chr8.4:71517795-71517814 | MS.gene81045:CDS | 30.0% | |
! | CAAGCTCTAATATCCAAAAA+TGG | - | chr8.4:71515786-71515805 | MS.gene81045:intron | 30.0% |
! | CTAAAATTGTTGTTCCGAAA+AGG | - | chr8.4:71517092-71517111 | MS.gene81045:intron | 30.0% |
! | CTTTTCGGAACAACAATTTT+AGG | + | chr8.4:71517094-71517113 | None:intergenic | 30.0% |
! | TAGTGAAGAGCAATTTTTGT+CGG | + | chr8.4:71515296-71515315 | None:intergenic | 30.0% |
! | TTGTAAGTTCTTTTACCCAT+TGG | - | chr8.4:71516428-71516447 | MS.gene81045:intron | 30.0% |
! | TTTTGCGTTTGTTTACCATA+AGG | - | chr8.4:71516923-71516942 | MS.gene81045:intron | 30.0% |
!! | CTCTTTGAAATCATTGTTGA+TGG | + | chr8.4:71516975-71516994 | None:intergenic | 30.0% |
!! | GCTACAGTTTAATTTTTCTG+TGG | - | chr8.4:71516486-71516505 | MS.gene81045:intron | 30.0% |
!! | TAATTTGCTAAACCTGAGAA+AGG | + | chr8.4:71516079-71516098 | None:intergenic | 30.0% |
!!! | ACGTTTTTTGTTCGCTTTTT+AGG | - | chr8.4:71516196-71516215 | MS.gene81045:intron | 30.0% |
!!! | TTTTTTGTTCGCTTTTTAGG+TGG | - | chr8.4:71516199-71516218 | MS.gene81045:intron | 30.0% |
AAGGAAAGAGCCATTAATTG+TGG | + | chr8.4:71517542-71517561 | None:intergenic | 35.0% | |
ACACACTATTAAGAGGAGAA+AGG | + | chr8.4:71515511-71515530 | None:intergenic | 35.0% | |
AGTAATAACATCATCCAGGT+TGG | + | chr8.4:71517783-71517802 | None:intergenic | 35.0% | |
ATCTCAGATTACGTATTGGA+AGG | - | chr8.4:71516040-71516059 | MS.gene81045:intron | 35.0% | |
ATGATCTAGGCAATTGATAC+AGG | + | chr8.4:71515607-71515626 | None:intergenic | 35.0% | |
ATTACTCTTCTCCATCTTTG+GGG | - | chr8.4:71517797-71517816 | MS.gene81045:CDS | 35.0% | |
CAAACAAATGCCATATGAGA+TGG | + | chr8.4:71516828-71516847 | None:intergenic | 35.0% | |
CTGCACAACAAAATAAGCAT+TGG | + | chr8.4:71515338-71515357 | None:intergenic | 35.0% | |
GAAGAGTAATAACATCATCC+AGG | + | chr8.4:71517787-71517806 | None:intergenic | 35.0% | |
GAATATCCTTATAAACCTCC+TGG | - | chr8.4:71516253-71516272 | MS.gene81045:intron | 35.0% | |
GATAGTAATAAACTGGGTGT+TGG | + | chr8.4:71516158-71516177 | None:intergenic | 35.0% | |
GGTTTATAAGGATATTCCTG+AGG | + | chr8.4:71516250-71516269 | None:intergenic | 35.0% | |
TACTATATTGTCAGCAAGGA+AGG | - | chr8.4:71515929-71515948 | MS.gene81045:intron | 35.0% | |
TATGAATGCAGCATACTTAC+CGG | - | chr8.4:71516734-71516753 | MS.gene81045:intron | 35.0% | |
TGGAAAAATCAAGTTTCCTC+AGG | - | chr8.4:71516231-71516250 | MS.gene81045:intron | 35.0% | |
TGGTTGTATTGTTTGCACTA+GGG | - | chr8.4:71516642-71516661 | MS.gene81045:CDS | 35.0% | |
TTGGTTGTATTGTTTGCACT+AGG | - | chr8.4:71516641-71516660 | MS.gene81045:CDS | 35.0% | |
! | TCAAGAATATCACTTGGTGA+AGG | + | chr8.4:71515716-71515735 | None:intergenic | 35.0% |
! | TTGTTTTCCAAAACAGACCT+CGG | + | chr8.4:71517684-71517703 | None:intergenic | 35.0% |
!! | AAATCGGTTTGTCTTCCAAT+GGG | + | chr8.4:71516446-71516465 | None:intergenic | 35.0% |
!! | TTAGCTTGTTCTGTGATCAT+TGG | - | chr8.4:71515366-71515385 | MS.gene81045:CDS | 35.0% |
ACCCAAAAAACCGCTAAAAG+AGG | + | chr8.4:71517158-71517177 | None:intergenic | 40.0% | |
AGAAGACTTGAAAAGGGTTG+AGG | - | chr8.4:71517719-71517738 | MS.gene81045:intron | 40.0% | |
AGCTTATGAACACCTACAAC+GGG | + | chr8.4:71517302-71517321 | None:intergenic | 40.0% | |
AGGCAAATGCAAGAGTGATA+TGG | + | chr8.4:71517138-71517157 | None:intergenic | 40.0% | |
ATCCAATGTGGTCTGTATCA+AGG | - | chr8.4:71516545-71516564 | MS.gene81045:intron | 40.0% | |
ATGAATGCAGCATACTTACC+GGG | - | chr8.4:71516735-71516754 | MS.gene81045:intron | 40.0% | |
CACAGGAGAAGACTTGAAAA+GGG | - | chr8.4:71517713-71517732 | MS.gene81045:intron | 40.0% | |
CACATTGGATTCCAACTTTC+AGG | + | chr8.4:71516535-71516554 | None:intergenic | 40.0% | |
CACCAAGTGATATTCTTGAG+TGG | - | chr8.4:71515717-71515736 | MS.gene81045:intron | 40.0% | |
CAGCTTATGAACACCTACAA+CGG | + | chr8.4:71517303-71517322 | None:intergenic | 40.0% | |
CTACAGTGTGTACTTCACAA+AGG | - | chr8.4:71515568-71515587 | MS.gene81045:intron | 40.0% | |
CTGAAAGTTGGAATCCAATG+TGG | - | chr8.4:71516533-71516552 | MS.gene81045:intron | 40.0% | |
CTGATTCCAGGAGGTTTATA+AGG | + | chr8.4:71516262-71516281 | None:intergenic | 40.0% | |
CTGGTTTCTTCCATCTCATA+TGG | - | chr8.4:71516815-71516834 | MS.gene81045:CDS | 40.0% | |
CTTATAAACCTCCTGGAATC+AGG | - | chr8.4:71516260-71516279 | MS.gene81045:intron | 40.0% | |
GAAAACAAGGATTTCCAACC+TGG | - | chr8.4:71517766-71517785 | MS.gene81045:intron | 40.0% | |
GAAAACAATGTAGAGTCCAC+AGG | - | chr8.4:71517696-71517715 | MS.gene81045:intron | 40.0% | |
GAAGACTTGAAAAGGGTTGA+GGG | - | chr8.4:71517720-71517739 | MS.gene81045:intron | 40.0% | |
GAGACATTGCTCAATGTTGA+TGG | + | chr8.4:71517508-71517527 | None:intergenic | 40.0% | |
GGCAAATGCAAGAGTGATAT+GGG | + | chr8.4:71517137-71517156 | None:intergenic | 40.0% | |
GTAAAACCCATATGACCAAC+TGG | - | chr8.4:71515855-71515874 | MS.gene81045:intron | 40.0% | |
GTAGCATGACAACACCTAAT+GGG | - | chr8.4:71516364-71516383 | MS.gene81045:intron | 40.0% | |
GTATTGTTTGCACTAGGGAA+TGG | - | chr8.4:71516647-71516666 | MS.gene81045:CDS | 40.0% | |
GTTTCAGCTGTATTGTGTGT+TGG | - | chr8.4:71516122-71516141 | MS.gene81045:intron | 40.0% | |
TACCATGAATGAAAGAAGCC+CGG | + | chr8.4:71516756-71516775 | None:intergenic | 40.0% | |
TCAAGAATGCTGCAACAAGA+AGG | + | chr8.4:71516288-71516307 | None:intergenic | 40.0% | |
TGTAGCATGACAACACCTAA+TGG | - | chr8.4:71516363-71516382 | MS.gene81045:intron | 40.0% | |
TTGCAGTTCATCCTGAAAGT+TGG | - | chr8.4:71516521-71516540 | MS.gene81045:intron | 40.0% | |
! | AATATCACTTGGTGAAGGAC+GGG | + | chr8.4:71515711-71515730 | None:intergenic | 40.0% |
! | ACAGACTTCTCTTTTGCAGA+TGG | - | chr8.4:71517380-71517399 | MS.gene81045:intron | 40.0% |
! | CTTGCATTTGCCTCTTTTAG+CGG | - | chr8.4:71517145-71517164 | MS.gene81045:intron | 40.0% |
! | GAATATCACTTGGTGAAGGA+CGG | + | chr8.4:71515712-71515731 | None:intergenic | 40.0% |
! | GCCTCTTTTAGCGGTTTTTT+GGG | - | chr8.4:71517154-71517173 | MS.gene81045:intron | 40.0% |
! | TAAAAGTCCGAGGTCTGTTT+TGG | - | chr8.4:71517674-71517693 | MS.gene81045:intron | 40.0% |
! | TGCCTCTTTTAGCGGTTTTT+TGG | - | chr8.4:71517153-71517172 | MS.gene81045:intron | 40.0% |
!! | ATTGCTCAATGTTGATGGTG+CGG | + | chr8.4:71517503-71517522 | None:intergenic | 40.0% |
!! | CAAACCTTACTTTTGCTCTC+GGG | - | chr8.4:71515889-71515908 | MS.gene81045:intron | 40.0% |
!! | CAAATCGGTTTGTCTTCCAA+TGG | + | chr8.4:71516447-71516466 | None:intergenic | 40.0% |
!! | GCAAACCTTACTTTTGCTCT+CGG | - | chr8.4:71515888-71515907 | MS.gene81045:intron | 40.0% |
!!! | CTTTTAGCGGTTTTTTGGGT+AGG | - | chr8.4:71517158-71517177 | MS.gene81045:intron | 40.0% |
!!! | GTTTTTTGGGTAGGTTGGTT+GGG | - | chr8.4:71517167-71517186 | MS.gene81045:intron | 40.0% |
AGTAGTGTTTACACTGCCAG+TGG | + | chr8.4:71517418-71517437 | None:intergenic | 45.0% | |
CAGTGTGTACTTCACAAAGG+TGG | - | chr8.4:71515571-71515590 | MS.gene81045:intron | 45.0% | |
CCACAGGAGAAGACTTGAAA+AGG | - | chr8.4:71517712-71517731 | MS.gene81045:intron | 45.0% | |
CGCCACTCAAGAATATCACT+TGG | + | chr8.4:71515722-71515741 | None:intergenic | 45.0% | |
CTGGTCAAGATAAAAGTCCG+AGG | - | chr8.4:71517664-71517683 | MS.gene81045:intron | 45.0% | |
CTTATGAACACCTACAACGG+GGG | + | chr8.4:71517300-71517319 | None:intergenic | 45.0% | |
GAAAAGGGTTGAGGGATTGA+AGG | - | chr8.4:71517728-71517747 | MS.gene81045:intron | 45.0% | |
GACCTTGATACAGACCACAT+TGG | + | chr8.4:71516550-71516569 | None:intergenic | 45.0% | |
GCGAGGAGAAACAGAAAACA+AGG | - | chr8.4:71517753-71517772 | MS.gene81045:intron | 45.0% | |
GCTTATGAACACCTACAACG+GGG | + | chr8.4:71517301-71517320 | None:intergenic | 45.0% | |
GTGCTCTATACTCCTTCTGA+AGG | + | chr8.4:71515242-71515261 | None:intergenic | 45.0% | |
GTTGTACTTCTCCACGTACT+CGG | + | chr8.4:71517592-71517611 | None:intergenic | 45.0% | |
TACCGGGCTTCTTTCATTCA+TGG | - | chr8.4:71516751-71516770 | MS.gene81045:intron | 45.0% | |
TACGTATTGGAAGGAAGCGA+GGG | - | chr8.4:71516049-71516068 | MS.gene81045:intron | 45.0% | |
TGCCATAACAACCCCAAAGA+TGG | + | chr8.4:71517811-71517830 | None:intergenic | 45.0% | |
TTACGTATTGGAAGGAAGCG+AGG | - | chr8.4:71516048-71516067 | MS.gene81045:intron | 45.0% | |
TTCCTGAATGTTGCACTGCA+AGG | + | chr8.4:71517561-71517580 | None:intergenic | 45.0% | |
TTCCTTGCAGTGCAACATTC+AGG | - | chr8.4:71517556-71517575 | MS.gene81045:intron | 45.0% | |
TTGCGACCAGTTGGTCATAT+GGG | + | chr8.4:71515864-71515883 | None:intergenic | 45.0% | |
TTGTACTTCTCCACGTACTC+GGG | + | chr8.4:71517591-71517610 | None:intergenic | 45.0% | |
!! | CTCCATCTTTGGGGTTGTTA+TGG | - | chr8.4:71517806-71517825 | MS.gene81045:CDS | 45.0% |
!!! | CCTTTTCAAGTCTTCTCCTG+TGG | + | chr8.4:71517715-71517734 | None:intergenic | 45.0% |
!!! | GGTTTTTTGGGTAGGTTGGT+TGG | - | chr8.4:71517166-71517185 | MS.gene81045:intron | 45.0% |
!!! | TAGCGGTTTTTTGGGTAGGT+TGG | - | chr8.4:71517162-71517181 | MS.gene81045:intron | 45.0% |
AGAGCCCGAGAGCAAAAGTA+AGG | + | chr8.4:71515896-71515915 | None:intergenic | 50.0% | |
ATGCATCAAGCGCCTTCAGA+AGG | - | chr8.4:71515227-71515246 | MS.gene81045:CDS | 50.0% | |
ATGGATACCAGTCCAACCAC+TGG | - | chr8.4:71517399-71517418 | MS.gene81045:intron | 50.0% | |
GCATGACAACACCTAATGGG+CGG | - | chr8.4:71516367-71516386 | MS.gene81045:intron | 50.0% | |
GGAGCCAGTTTCCCATATTG+TGG | - | chr8.4:71515685-71515704 | MS.gene81045:intron | 50.0% | |
GTGTTTACACTGCCAGTGGT+TGG | + | chr8.4:71517414-71517433 | None:intergenic | 50.0% | |
GTTGCGACCAGTTGGTCATA+TGG | + | chr8.4:71515865-71515884 | None:intergenic | 50.0% | |
TGAAGGACGGGCCACAATAT+GGG | + | chr8.4:71515699-71515718 | None:intergenic | 50.0% | |
TGTACTTCTCCACGTACTCG+GGG | + | chr8.4:71517590-71517609 | None:intergenic | 50.0% | |
TGTGTCATGAACCGCCCATT+AGG | + | chr8.4:71516381-71516400 | None:intergenic | 50.0% | |
TTGAGGGATTGAAGGATGCG+AGG | - | chr8.4:71517736-71517755 | MS.gene81045:intron | 50.0% | |
TTGTTAAGCTCCCCCGTTGT+AGG | - | chr8.4:71517287-71517306 | MS.gene81045:intron | 50.0% | |
! | TGACCAGTCTCTGATGACGT+TGG | + | chr8.4:71517651-71517670 | None:intergenic | 50.0% |
!! | ACAAGAAGGCACCTGATTCC+AGG | + | chr8.4:71516274-71516293 | None:intergenic | 50.0% |
!! | TTGGGTAGGTTGGTTGGGAT+GGG | - | chr8.4:71517172-71517191 | MS.gene81045:intron | 50.0% |
!! | TTTGGGTAGGTTGGTTGGGA+TGG | - | chr8.4:71517171-71517190 | MS.gene81045:intron | 50.0% |
AGCGAGGGAACACCTTTCTC+AGG | - | chr8.4:71516064-71516083 | MS.gene81045:intron | 55.0% | |
CAGCCAACGTCATCAGAGAC+TGG | - | chr8.4:71517645-71517664 | MS.gene81045:intron | 55.0% | |
CGGGCCACAATATGGGAAAC+TGG | + | chr8.4:71515692-71515711 | None:intergenic | 55.0% | |
GAAGATGTTCCCCGAGTACG+TGG | - | chr8.4:71517578-71517597 | MS.gene81045:intron | 55.0% | |
GTGAAGGACGGGCCACAATA+TGG | + | chr8.4:71515700-71515719 | None:intergenic | 55.0% | |
TACACTGCCAGTGGTTGGAC+TGG | + | chr8.4:71517409-71517428 | None:intergenic | 55.0% | |
TTTGCTGCGTTGCGACCAGT+TGG | + | chr8.4:71515873-71515892 | None:intergenic | 55.0% | |
!! | AGAAGGCACCTGATTCCAGG+AGG | + | chr8.4:71516271-71516290 | None:intergenic | 55.0% |
!! | GTAGGTTGGTTGGGATGGGA+GGG | - | chr8.4:71517176-71517195 | MS.gene81045:intron | 55.0% |
!! | TAGGTTGGTTGGGATGGGAG+GGG | - | chr8.4:71517177-71517196 | MS.gene81045:intron | 55.0% |
!! | GGTAGGTTGGTTGGGATGGG+AGG | - | chr8.4:71517175-71517194 | MS.gene81045:intron | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.4 | gene | 71515213 | 71517851 | 71515213 | ID=MS.gene81045 |
chr8.4 | mRNA | 71515213 | 71517851 | 71515213 | ID=MS.gene81045.t1;Parent=MS.gene81045 |
chr8.4 | exon | 71517795 | 71517851 | 71517795 | ID=MS.gene81045.t1.exon1;Parent=MS.gene81045.t1 |
chr8.4 | CDS | 71517795 | 71517851 | 71517795 | ID=cds.MS.gene81045.t1;Parent=MS.gene81045.t1 |
chr8.4 | exon | 71517324 | 71517378 | 71517324 | ID=MS.gene81045.t1.exon2;Parent=MS.gene81045.t1 |
chr8.4 | CDS | 71517324 | 71517378 | 71517324 | ID=cds.MS.gene81045.t1;Parent=MS.gene81045.t1 |
chr8.4 | exon | 71516979 | 71517017 | 71516979 | ID=MS.gene81045.t1.exon3;Parent=MS.gene81045.t1 |
chr8.4 | CDS | 71516979 | 71517017 | 71516979 | ID=cds.MS.gene81045.t1;Parent=MS.gene81045.t1 |
chr8.4 | exon | 71516783 | 71516846 | 71516783 | ID=MS.gene81045.t1.exon4;Parent=MS.gene81045.t1 |
chr8.4 | CDS | 71516783 | 71516846 | 71516783 | ID=cds.MS.gene81045.t1;Parent=MS.gene81045.t1 |
chr8.4 | exon | 71516635 | 71516696 | 71516635 | ID=MS.gene81045.t1.exon5;Parent=MS.gene81045.t1 |
chr8.4 | CDS | 71516635 | 71516696 | 71516635 | ID=cds.MS.gene81045.t1;Parent=MS.gene81045.t1 |
chr8.4 | exon | 71516498 | 71516537 | 71516498 | ID=MS.gene81045.t1.exon6;Parent=MS.gene81045.t1 |
chr8.4 | CDS | 71516498 | 71516537 | 71516498 | ID=cds.MS.gene81045.t1;Parent=MS.gene81045.t1 |
chr8.4 | exon | 71516292 | 71516319 | 71516292 | ID=MS.gene81045.t1.exon7;Parent=MS.gene81045.t1 |
chr8.4 | CDS | 71516292 | 71516319 | 71516292 | ID=cds.MS.gene81045.t1;Parent=MS.gene81045.t1 |
chr8.4 | exon | 71515574 | 71515665 | 71515574 | ID=MS.gene81045.t1.exon8;Parent=MS.gene81045.t1 |
chr8.4 | CDS | 71515574 | 71515665 | 71515574 | ID=cds.MS.gene81045.t1;Parent=MS.gene81045.t1 |
chr8.4 | exon | 71515213 | 71515498 | 71515213 | ID=MS.gene81045.t1.exon9;Parent=MS.gene81045.t1 |
chr8.4 | CDS | 71515213 | 71515498 | 71515213 | ID=cds.MS.gene81045.t1;Parent=MS.gene81045.t1 |
Gene Sequence |
Protein sequence |