AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene81045


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene81045.t1 MTR_8g023380 97.095 241 6 1 1 240 1 241 6.38e-178 488
MS.gene81045.t1 MTR_4g121960 34.637 179 112 3 6 182 11 186 1.50e-33 123
MS.gene81045.t1 MTR_8g071040 34.188 117 68 3 8 120 4 115 5.42e-17 75.5
MS.gene81045.t1 MTR_1g021150 34.188 117 68 3 8 120 4 115 6.77e-16 72.8
MS.gene81045.t1 MTR_3g062450 32.479 117 70 3 8 120 4 115 1.00e-15 72.4
MS.gene81045.t1 MTR_5g075580 32.479 117 70 3 8 120 4 115 1.08e-15 72.0
MS.gene81045.t1 MTR_8g468530 31.092 119 73 3 8 122 23 136 1.12e-15 72.8
MS.gene81045.t1 MTR_4g108080 31.092 119 73 3 8 122 7 120 1.86e-15 71.6
MS.gene81045.t1 MTR_7g116940 32.479 117 70 3 8 120 4 115 2.03e-15 71.2
MS.gene81045.t1 MTR_4g073240 31.624 117 71 3 8 120 4 115 2.49e-15 71.2
MS.gene81045.t1 MTR_7g116940 33.333 111 65 3 8 114 4 109 1.44e-13 65.9
MS.gene81045.t1 MTR_4g108080 31.481 108 65 3 8 111 7 109 4.35e-13 64.3
MS.gene81045.t1 MTR_7g116940 30.973 113 69 3 8 116 4 111 4.90e-13 65.1
MS.gene81045.t1 MTR_8g085690 28.571 126 73 3 8 125 25 141 1.01e-12 64.7
MS.gene81045.t1 MTR_3g110110 29.600 125 78 4 4 122 2 122 9.82e-12 61.6
MS.gene81045.t1 MTR_1g021150 33.673 98 56 3 27 120 31 123 1.60e-11 61.2
MS.gene81045.t1 MTR_5g009020 33.621 116 68 3 4 115 31 141 3.32e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene81045.t1 AT1G17280 77.083 240 52 2 1 240 1 237 1.29e-138 389
MS.gene81045.t1 AT1G17280 77.083 240 52 2 1 240 1 237 1.29e-138 389
MS.gene81045.t1 AT1G17280 77.083 240 52 2 1 240 1 237 1.29e-138 389
MS.gene81045.t1 AT1G17280 77.083 240 52 2 1 240 1 237 1.29e-138 389
MS.gene81045.t1 AT1G17280 77.083 240 52 2 1 240 1 237 1.29e-138 389
MS.gene81045.t1 AT1G17280 77.083 240 52 2 1 240 1 237 1.29e-138 389
MS.gene81045.t1 AT1G17280 77.083 240 52 2 1 240 1 237 1.29e-138 389
MS.gene81045.t1 AT1G17280 77.083 240 52 2 1 240 1 237 1.29e-138 389
MS.gene81045.t1 AT5G50430 74.180 244 58 2 1 240 1 243 2.04e-136 383
MS.gene81045.t1 AT5G50430 74.180 244 58 2 1 240 1 243 2.04e-136 383
MS.gene81045.t1 AT1G17280 75.203 246 52 3 1 240 1 243 3.61e-136 382
MS.gene81045.t1 AT5G50430 68.852 244 58 3 1 240 1 230 1.48e-121 345
MS.gene81045.t1 AT3G17000 41.912 136 76 2 6 139 12 146 1.29e-33 123
MS.gene81045.t1 AT5G56150 34.188 117 68 3 8 120 4 115 5.79e-17 75.5
MS.gene81045.t1 AT3G08690 34.188 117 68 3 8 120 4 115 3.54e-16 73.6
MS.gene81045.t1 AT3G08690 34.188 117 68 3 8 120 4 115 3.54e-16 73.6
MS.gene81045.t1 AT4G27960 33.333 117 69 3 8 120 4 115 6.00e-16 72.8
MS.gene81045.t1 AT1G64230 33.333 117 69 3 8 120 4 115 6.46e-16 72.8
MS.gene81045.t1 AT1G64230 33.333 117 69 3 8 120 4 115 6.46e-16 72.8
MS.gene81045.t1 AT5G41700 33.333 117 69 3 8 120 4 115 9.98e-16 72.4
MS.gene81045.t1 AT5G41700 33.333 117 69 3 8 120 4 115 9.98e-16 72.4
MS.gene81045.t1 AT5G41700 33.333 117 69 3 8 120 4 115 9.98e-16 72.4
MS.gene81045.t1 AT2G02760 31.092 119 73 3 8 122 7 120 1.01e-15 72.4
MS.gene81045.t1 AT2G02760 31.092 119 73 3 8 122 7 120 1.01e-15 72.4
MS.gene81045.t1 AT2G02760 31.092 119 73 3 8 122 7 120 1.01e-15 72.4
MS.gene81045.t1 AT2G02760 31.092 119 73 3 8 122 7 120 1.01e-15 72.4
MS.gene81045.t1 AT1G14400 31.092 119 73 3 8 122 7 120 1.14e-15 72.4
MS.gene81045.t1 AT1G14400 31.092 119 73 3 8 122 7 120 1.14e-15 72.4
MS.gene81045.t1 AT4G27960 33.333 117 69 3 8 120 34 145 1.59e-15 72.4
MS.gene81045.t1 AT5G41700 34.746 118 67 4 8 120 4 116 1.96e-15 71.6
MS.gene81045.t1 AT5G53300 32.479 117 70 3 8 120 4 115 2.19e-15 71.2
MS.gene81045.t1 AT5G53300 32.479 117 70 3 8 120 4 115 2.19e-15 71.2
MS.gene81045.t1 AT5G53300 32.479 117 70 3 8 120 4 115 2.19e-15 71.2
MS.gene81045.t1 AT5G62540 31.061 132 78 4 8 135 7 129 1.20e-14 69.3
MS.gene81045.t1 AT5G56150 33.929 112 64 4 8 115 4 109 1.88e-14 67.8
MS.gene81045.t1 AT2G16740 30.769 117 72 3 8 120 4 115 3.08e-14 68.2
MS.gene81045.t1 AT1G64230 30.000 120 71 4 5 120 47 157 1.47e-13 67.4
MS.gene81045.t1 AT1G64230 30.000 120 71 4 5 120 47 157 1.47e-13 67.4
MS.gene81045.t1 AT5G41700 33.654 104 60 3 8 107 4 102 3.32e-13 65.5
MS.gene81045.t1 AT1G64230 30.952 126 69 4 8 120 4 124 4.40e-13 65.5
MS.gene81045.t1 AT3G08700 31.356 118 71 4 8 120 4 116 5.85e-13 64.7
MS.gene81045.t1 AT3G08700 31.356 118 71 4 8 120 4 116 5.85e-13 64.7
MS.gene81045.t1 AT5G53300 32.692 104 61 3 8 107 4 102 1.87e-12 62.4
MS.gene81045.t1 AT1G36340 30.841 107 68 3 3 107 6 108 2.70e-12 63.2
MS.gene81045.t1 AT1G36340 30.841 107 68 3 3 107 6 108 2.70e-12 63.2
MS.gene81045.t1 AT5G25760 28.800 125 79 4 4 122 2 122 2.94e-11 60.5
MS.gene81045.t1 AT5G25760 28.800 125 79 4 4 122 2 122 2.94e-11 60.5
MS.gene81045.t1 AT3G13550 28.319 113 80 1 8 120 39 150 8.23e-11 59.3

Find 66 sgRNAs with CRISPR-Local

Find 174 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACATTGGATTCCAACTTTC+AGG 0.160053 8.4:+71516510 None:intergenic
TTATTACTCTTCTCCATCTT+TGG 0.164344 8.4:-71515247 MS.gene81045:CDS
CTCCATCTTTGGGGTTGTTA+TGG 0.233457 8.4:-71515236 MS.gene81045:CDS
GTGAAGGACGGGCCACAATA+TGG 0.237187 8.4:+71517345 None:intergenic
TATTACTCTTCTCCATCTTT+GGG 0.241159 8.4:-71515246 MS.gene81045:CDS
CTGATTCCAGGAGGTTTATA+AGG 0.284681 8.4:+71516783 None:intergenic
TAAAAGTCCGAGGTCTGTTT+TGG 0.291867 8.4:-71515368 MS.gene81045:CDS
TTCCTTGCAGTGCAACATTC+AGG 0.294415 8.4:-71515486 MS.gene81045:intron
TATGAATGCAGCATACTTAC+CGG 0.344644 8.4:-71516308 MS.gene81045:intron
TACCGGGCTTCTTTCATTCA+TGG 0.353871 8.4:-71516291 MS.gene81045:intron
TGTAGCATGACAACACCTAA+TGG 0.360595 8.4:-71516679 MS.gene81045:intron
CTTATAAACCTCCTGGAATC+AGG 0.389083 8.4:-71516782 MS.gene81045:intron
CCACAGGAGAAGACTTGAAA+AGG 0.427561 8.4:-71515330 MS.gene81045:CDS
ACAAGAAGGCACCTGATTCC+AGG 0.429061 8.4:+71516771 None:intergenic
CGGGCCACAATATGGGAAAC+TGG 0.431636 8.4:+71517353 None:intergenic
GTTGTACTTCTCCACGTACT+CGG 0.441817 8.4:+71515453 None:intergenic
TGTGTCATGAACCGCCCATT+AGG 0.446261 8.4:+71516664 None:intergenic
GAAGACTTGAAAAGGGTTGA+GGG 0.448975 8.4:-71515322 MS.gene81045:CDS
AGCGAGGGAACACCTTTCTC+AGG 0.450214 8.4:-71516978 MS.gene81045:intron
TTGTACTTCTCCACGTACTC+GGG 0.458106 8.4:+71515454 None:intergenic
TTGCAGTTCATCCTGAAAGT+TGG 0.464526 8.4:-71516521 MS.gene81045:intron
GAAAAGGGTTGAGGGATTGA+AGG 0.471212 8.4:-71515314 MS.gene81045:CDS
GAATATCCTTATAAACCTCC+TGG 0.476050 8.4:-71516789 MS.gene81045:CDS
GTAGCATGACAACACCTAAT+GGG 0.487721 8.4:-71516678 MS.gene81045:intron
TGCCATAACAACCCCAAAGA+TGG 0.488741 8.4:+71515234 None:intergenic
TGAAGGACGGGCCACAATAT+GGG 0.495022 8.4:+71517346 None:intergenic
AGAAGACTTGAAAAGGGTTG+AGG 0.497193 8.4:-71515323 MS.gene81045:CDS
TCATATCTCAGATTACGTAT+TGG 0.507101 8.4:-71517006 MS.gene81045:intron
GGAGCCAGTTTCCCATATTG+TGG 0.524830 8.4:-71517357 MS.gene81045:CDS
TACACTGCCAGTGGTTGGAC+TGG 0.524839 8.4:+71515636 None:intergenic
AGTAATAACATCATCCAGGT+TGG 0.531733 8.4:+71515262 None:intergenic
CGCCACTCAAGAATATCACT+TGG 0.539408 8.4:+71517323 None:intergenic
GAAAACAAGGATTTCCAACC+TGG 0.547451 8.4:-71515276 MS.gene81045:CDS
ATGCATCAAGCGCCTTCAGA+AGG 0.549944 8.4:-71517815 MS.gene81045:CDS
AATATCACTTGGTGAAGGAC+GGG 0.551464 8.4:+71517334 None:intergenic
ATCCAATGTGGTCTGTATCA+AGG 0.552283 8.4:-71516497 MS.gene81045:intron
ATTACTCTTCTCCATCTTTG+GGG 0.552481 8.4:-71515245 MS.gene81045:CDS
GAATATCACTTGGTGAAGGA+CGG 0.560660 8.4:+71517333 None:intergenic
TAATTTGCTAAACCTGAGAA+AGG 0.560758 8.4:+71516966 None:intergenic
GAAGAGTAATAACATCATCC+AGG 0.567563 8.4:+71515258 None:intergenic
TACCATGAATGAAAGAAGCC+CGG 0.570761 8.4:+71516289 None:intergenic
CACAGGAGAAGACTTGAAAA+GGG 0.572298 8.4:-71515329 MS.gene81045:CDS
GAAAACAATGTAGAGTCCAC+AGG 0.573857 8.4:-71515346 MS.gene81045:CDS
CAGCCAACGTCATCAGAGAC+TGG 0.574761 8.4:-71515397 MS.gene81045:CDS
TTGAGGGATTGAAGGATGCG+AGG 0.577968 8.4:-71515306 MS.gene81045:CDS
GTGCTCTATACTCCTTCTGA+AGG 0.582054 8.4:+71517803 None:intergenic
ATGAATGCAGCATACTTACC+GGG 0.582437 8.4:-71516307 MS.gene81045:intron
ATCTCAGATTACGTATTGGA+AGG 0.583968 8.4:-71517002 MS.gene81045:intron
AAAATTCACAGCTGGAGTAG+AGG 0.587096 8.4:+71515208 None:intergenic
GTGTTTACACTGCCAGTGGT+TGG 0.587196 8.4:+71515631 None:intergenic
GAAGATGTTCCCCGAGTACG+TGG 0.599484 8.4:-71515464 MS.gene81045:CDS
TGTACTTCTCCACGTACTCG+GGG 0.603988 8.4:+71515455 None:intergenic
ATGGATACCAGTCCAACCAC+TGG 0.607472 8.4:-71515643 MS.gene81045:CDS
GACCTTGATACAGACCACAT+TGG 0.612471 8.4:+71516495 None:intergenic
TACGTATTGGAAGGAAGCGA+GGG 0.615267 8.4:-71516993 MS.gene81045:CDS
GCGAGGAGAAACAGAAAACA+AGG 0.615922 8.4:-71515289 MS.gene81045:CDS
TTACGTATTGGAAGGAAGCG+AGG 0.625291 8.4:-71516994 MS.gene81045:CDS
AGTAGTGTTTACACTGCCAG+TGG 0.639725 8.4:+71515627 None:intergenic
CACCAAGTGATATTCTTGAG+TGG 0.643937 8.4:-71517325 MS.gene81045:CDS
TCAAGAATATCACTTGGTGA+AGG 0.663216 8.4:+71517329 None:intergenic
GGTTTATAAGGATATTCCTG+AGG 0.670816 8.4:+71516795 None:intergenic
CTGAAAGTTGGAATCCAATG+TGG 0.673790 8.4:-71516509 MS.gene81045:CDS
TGACCAGTCTCTGATGACGT+TGG 0.673844 8.4:+71515394 None:intergenic
GCATGACAACACCTAATGGG+CGG 0.704176 8.4:-71516675 MS.gene81045:CDS
CTGGTCAAGATAAAAGTCCG+AGG 0.710589 8.4:-71515378 MS.gene81045:CDS
AGAAGGCACCTGATTCCAGG+AGG 0.717165 8.4:+71516774 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGAAAAAATTAAAACATAAA+AGG + chr8.4:71516613-71516632 None:intergenic 10.0%
!! GAAAAAATTAAAACATAAAA+GGG + chr8.4:71516612-71516631 None:intergenic 10.0%
!!! TAATTTTTTCTTTTGAAATT+TGG - chr8.4:71516622-71516641 MS.gene81045:intron 10.0%
!!! TCACTATTTATTTTTATTTA+TGG - chr8.4:71515310-71515329 MS.gene81045:CDS 10.0%
!!! ACATTTTCCTTTATATTAAA+TGG + chr8.4:71517331-71517350 None:intergenic 15.0%
!! AAAATTAAACTGTAGCAATA+TGG + chr8.4:71516482-71516501 None:intergenic 20.0%
!! AAATTAAACTGTAGCAATAT+GGG + chr8.4:71516481-71516500 None:intergenic 20.0%
!! TTCAAATATTATGATGATCT+AGG + chr8.4:71515620-71515639 None:intergenic 20.0%
!!! AAGGGTTTTTCATAAAAAAA+TGG - chr8.4:71517111-71517130 MS.gene81045:intron 20.0%
!!! AATTTTATTACTGTATTTGC+AGG - chr8.4:71515664-71515683 MS.gene81045:intron 20.0%
!!! CATTATAAAAAGTATGAACT+TGG + chr8.4:71516345-71516364 None:intergenic 20.0%
!!! TTTTTATGAAAAACCCTTTT+CGG + chr8.4:71517109-71517128 None:intergenic 20.0%
! AACAGAATATGTTGAATCTT+TGG - chr8.4:71515812-71515831 MS.gene81045:intron 25.0%
! AAGTTGAGATAGTAATAAAC+TGG + chr8.4:71516165-71516184 None:intergenic 25.0%
! AGTTGAGATAGTAATAAACT+GGG + chr8.4:71516164-71516183 None:intergenic 25.0%
! ATAAATACACAAGAATAGAG+AGG + chr8.4:71515399-71515418 None:intergenic 25.0%
! CATGGTATGTTATTATGTTA+TGG - chr8.4:71516769-71516788 MS.gene81045:intron 25.0%
! CTGAATAATTGTTTCATGAT+TGG - chr8.4:71515540-71515559 MS.gene81045:intron 25.0%
! CTGACAATATAGTAGTATTA+AGG + chr8.4:71515923-71515942 None:intergenic 25.0%
! TATACTTGTACGCATAATAA+CGG - chr8.4:71517235-71517254 MS.gene81045:intron 25.0%
! TCATGCTATAAACATTTCAT+CGG + chr8.4:71515456-71515475 None:intergenic 25.0%
! TCTTGTGTATTTATGTATCT+GGG - chr8.4:71515405-71515424 MS.gene81045:CDS 25.0%
! TGTTGAGCCATTTAATATAA+AGG - chr8.4:71517321-71517340 MS.gene81045:intron 25.0%
! TTCATATTCTAATTGAACTC+TGG - chr8.4:71516796-71516815 MS.gene81045:CDS 25.0%
! TTCTTGTGTATTTATGTATC+TGG - chr8.4:71515404-71515423 MS.gene81045:CDS 25.0%
! TTGTTTGCTCATAAGATATT+GGG - chr8.4:71516841-71516860 MS.gene81045:intron 25.0%
! TTTGTTTGCTCATAAGATAT+TGG - chr8.4:71516840-71516859 MS.gene81045:intron 25.0%
!! AAAAAGAGTGATTTTCCTTA+TGG + chr8.4:71516941-71516960 None:intergenic 25.0%
!! AAGCTCTAATATCCAAAAAT+GGG - chr8.4:71515787-71515806 MS.gene81045:intron 25.0%
!! ATATTCTGTTTTCCCATTTT+TGG + chr8.4:71515802-71515821 None:intergenic 25.0%
!! GTAATTTATTTGTTAGCTAG+TGG - chr8.4:71515983-71516002 MS.gene81045:intron 25.0%
!! TAAAATTGTTGTTCCGAAAA+GGG - chr8.4:71517093-71517112 MS.gene81045:intron 25.0%
!! TAATTGTTTCATGATTGGTT+AGG - chr8.4:71515545-71515564 MS.gene81045:intron 25.0%
!!! AGTTTTGAAGTTCTTTTATG+TGG - chr8.4:71516580-71516599 MS.gene81045:intron 25.0%
!!! CTACAGTTTAATTTTTCTGT+GGG - chr8.4:71516487-71516506 MS.gene81045:intron 25.0%
!!! TACAGTTTAATTTTTCTGTG+GGG - chr8.4:71516488-71516507 MS.gene81045:intron 25.0%
!!! TAGTATTTTGATGTTGTTTG+TGG - chr8.4:71515430-71515449 MS.gene81045:CDS 25.0%
!!! TTTTTAGGTGGATATTACTA+TGG - chr8.4:71516211-71516230 MS.gene81045:intron 25.0%
ACTATAGACACACTATTAAG+AGG + chr8.4:71515518-71515537 None:intergenic 30.0%
AGGAGAAAGGAAACATATAT+AGG + chr8.4:71515498-71515517 None:intergenic 30.0%
AGTATGCTGCATTCATAAAT+TGG + chr8.4:71516731-71516750 None:intergenic 30.0%
ATACTACTATATTGTCAGCA+AGG - chr8.4:71515925-71515944 MS.gene81045:intron 30.0%
ATGTTTATAGCATGAATGAC+TGG - chr8.4:71515461-71515480 MS.gene81045:CDS 30.0%
GATTTGTGTTCCACAATTAA+TGG - chr8.4:71517529-71517548 MS.gene81045:intron 30.0%
GTATACAACAAAGACTACTA+TGG + chr8.4:71517220-71517239 None:intergenic 30.0%
TATTACTCTTCTCCATCTTT+GGG - chr8.4:71517796-71517815 MS.gene81045:CDS 30.0%
TCATATCTCAGATTACGTAT+TGG - chr8.4:71516036-71516055 MS.gene81045:intron 30.0%
TGGGTAACTATGATACAAAT+CGG + chr8.4:71516462-71516481 None:intergenic 30.0%
TGTTTATAGCATGAATGACT+GGG - chr8.4:71515462-71515481 MS.gene81045:CDS 30.0%
TTATTACTCTTCTCCATCTT+TGG - chr8.4:71517795-71517814 MS.gene81045:CDS 30.0%
! CAAGCTCTAATATCCAAAAA+TGG - chr8.4:71515786-71515805 MS.gene81045:intron 30.0%
! CTAAAATTGTTGTTCCGAAA+AGG - chr8.4:71517092-71517111 MS.gene81045:intron 30.0%
! CTTTTCGGAACAACAATTTT+AGG + chr8.4:71517094-71517113 None:intergenic 30.0%
! TAGTGAAGAGCAATTTTTGT+CGG + chr8.4:71515296-71515315 None:intergenic 30.0%
! TTGTAAGTTCTTTTACCCAT+TGG - chr8.4:71516428-71516447 MS.gene81045:intron 30.0%
! TTTTGCGTTTGTTTACCATA+AGG - chr8.4:71516923-71516942 MS.gene81045:intron 30.0%
!! CTCTTTGAAATCATTGTTGA+TGG + chr8.4:71516975-71516994 None:intergenic 30.0%
!! GCTACAGTTTAATTTTTCTG+TGG - chr8.4:71516486-71516505 MS.gene81045:intron 30.0%
!! TAATTTGCTAAACCTGAGAA+AGG + chr8.4:71516079-71516098 None:intergenic 30.0%
!!! ACGTTTTTTGTTCGCTTTTT+AGG - chr8.4:71516196-71516215 MS.gene81045:intron 30.0%
!!! TTTTTTGTTCGCTTTTTAGG+TGG - chr8.4:71516199-71516218 MS.gene81045:intron 30.0%
AAGGAAAGAGCCATTAATTG+TGG + chr8.4:71517542-71517561 None:intergenic 35.0%
ACACACTATTAAGAGGAGAA+AGG + chr8.4:71515511-71515530 None:intergenic 35.0%
AGTAATAACATCATCCAGGT+TGG + chr8.4:71517783-71517802 None:intergenic 35.0%
ATCTCAGATTACGTATTGGA+AGG - chr8.4:71516040-71516059 MS.gene81045:intron 35.0%
ATGATCTAGGCAATTGATAC+AGG + chr8.4:71515607-71515626 None:intergenic 35.0%
ATTACTCTTCTCCATCTTTG+GGG - chr8.4:71517797-71517816 MS.gene81045:CDS 35.0%
CAAACAAATGCCATATGAGA+TGG + chr8.4:71516828-71516847 None:intergenic 35.0%
CTGCACAACAAAATAAGCAT+TGG + chr8.4:71515338-71515357 None:intergenic 35.0%
GAAGAGTAATAACATCATCC+AGG + chr8.4:71517787-71517806 None:intergenic 35.0%
GAATATCCTTATAAACCTCC+TGG - chr8.4:71516253-71516272 MS.gene81045:intron 35.0%
GATAGTAATAAACTGGGTGT+TGG + chr8.4:71516158-71516177 None:intergenic 35.0%
GGTTTATAAGGATATTCCTG+AGG + chr8.4:71516250-71516269 None:intergenic 35.0%
TACTATATTGTCAGCAAGGA+AGG - chr8.4:71515929-71515948 MS.gene81045:intron 35.0%
TATGAATGCAGCATACTTAC+CGG - chr8.4:71516734-71516753 MS.gene81045:intron 35.0%
TGGAAAAATCAAGTTTCCTC+AGG - chr8.4:71516231-71516250 MS.gene81045:intron 35.0%
TGGTTGTATTGTTTGCACTA+GGG - chr8.4:71516642-71516661 MS.gene81045:CDS 35.0%
TTGGTTGTATTGTTTGCACT+AGG - chr8.4:71516641-71516660 MS.gene81045:CDS 35.0%
! TCAAGAATATCACTTGGTGA+AGG + chr8.4:71515716-71515735 None:intergenic 35.0%
! TTGTTTTCCAAAACAGACCT+CGG + chr8.4:71517684-71517703 None:intergenic 35.0%
!! AAATCGGTTTGTCTTCCAAT+GGG + chr8.4:71516446-71516465 None:intergenic 35.0%
!! TTAGCTTGTTCTGTGATCAT+TGG - chr8.4:71515366-71515385 MS.gene81045:CDS 35.0%
ACCCAAAAAACCGCTAAAAG+AGG + chr8.4:71517158-71517177 None:intergenic 40.0%
AGAAGACTTGAAAAGGGTTG+AGG - chr8.4:71517719-71517738 MS.gene81045:intron 40.0%
AGCTTATGAACACCTACAAC+GGG + chr8.4:71517302-71517321 None:intergenic 40.0%
AGGCAAATGCAAGAGTGATA+TGG + chr8.4:71517138-71517157 None:intergenic 40.0%
ATCCAATGTGGTCTGTATCA+AGG - chr8.4:71516545-71516564 MS.gene81045:intron 40.0%
ATGAATGCAGCATACTTACC+GGG - chr8.4:71516735-71516754 MS.gene81045:intron 40.0%
CACAGGAGAAGACTTGAAAA+GGG - chr8.4:71517713-71517732 MS.gene81045:intron 40.0%
CACATTGGATTCCAACTTTC+AGG + chr8.4:71516535-71516554 None:intergenic 40.0%
CACCAAGTGATATTCTTGAG+TGG - chr8.4:71515717-71515736 MS.gene81045:intron 40.0%
CAGCTTATGAACACCTACAA+CGG + chr8.4:71517303-71517322 None:intergenic 40.0%
CTACAGTGTGTACTTCACAA+AGG - chr8.4:71515568-71515587 MS.gene81045:intron 40.0%
CTGAAAGTTGGAATCCAATG+TGG - chr8.4:71516533-71516552 MS.gene81045:intron 40.0%
CTGATTCCAGGAGGTTTATA+AGG + chr8.4:71516262-71516281 None:intergenic 40.0%
CTGGTTTCTTCCATCTCATA+TGG - chr8.4:71516815-71516834 MS.gene81045:CDS 40.0%
CTTATAAACCTCCTGGAATC+AGG - chr8.4:71516260-71516279 MS.gene81045:intron 40.0%
GAAAACAAGGATTTCCAACC+TGG - chr8.4:71517766-71517785 MS.gene81045:intron 40.0%
GAAAACAATGTAGAGTCCAC+AGG - chr8.4:71517696-71517715 MS.gene81045:intron 40.0%
GAAGACTTGAAAAGGGTTGA+GGG - chr8.4:71517720-71517739 MS.gene81045:intron 40.0%
GAGACATTGCTCAATGTTGA+TGG + chr8.4:71517508-71517527 None:intergenic 40.0%
GGCAAATGCAAGAGTGATAT+GGG + chr8.4:71517137-71517156 None:intergenic 40.0%
GTAAAACCCATATGACCAAC+TGG - chr8.4:71515855-71515874 MS.gene81045:intron 40.0%
GTAGCATGACAACACCTAAT+GGG - chr8.4:71516364-71516383 MS.gene81045:intron 40.0%
GTATTGTTTGCACTAGGGAA+TGG - chr8.4:71516647-71516666 MS.gene81045:CDS 40.0%
GTTTCAGCTGTATTGTGTGT+TGG - chr8.4:71516122-71516141 MS.gene81045:intron 40.0%
TACCATGAATGAAAGAAGCC+CGG + chr8.4:71516756-71516775 None:intergenic 40.0%
TCAAGAATGCTGCAACAAGA+AGG + chr8.4:71516288-71516307 None:intergenic 40.0%
TGTAGCATGACAACACCTAA+TGG - chr8.4:71516363-71516382 MS.gene81045:intron 40.0%
TTGCAGTTCATCCTGAAAGT+TGG - chr8.4:71516521-71516540 MS.gene81045:intron 40.0%
! AATATCACTTGGTGAAGGAC+GGG + chr8.4:71515711-71515730 None:intergenic 40.0%
! ACAGACTTCTCTTTTGCAGA+TGG - chr8.4:71517380-71517399 MS.gene81045:intron 40.0%
! CTTGCATTTGCCTCTTTTAG+CGG - chr8.4:71517145-71517164 MS.gene81045:intron 40.0%
! GAATATCACTTGGTGAAGGA+CGG + chr8.4:71515712-71515731 None:intergenic 40.0%
! GCCTCTTTTAGCGGTTTTTT+GGG - chr8.4:71517154-71517173 MS.gene81045:intron 40.0%
! TAAAAGTCCGAGGTCTGTTT+TGG - chr8.4:71517674-71517693 MS.gene81045:intron 40.0%
! TGCCTCTTTTAGCGGTTTTT+TGG - chr8.4:71517153-71517172 MS.gene81045:intron 40.0%
!! ATTGCTCAATGTTGATGGTG+CGG + chr8.4:71517503-71517522 None:intergenic 40.0%
!! CAAACCTTACTTTTGCTCTC+GGG - chr8.4:71515889-71515908 MS.gene81045:intron 40.0%
!! CAAATCGGTTTGTCTTCCAA+TGG + chr8.4:71516447-71516466 None:intergenic 40.0%
!! GCAAACCTTACTTTTGCTCT+CGG - chr8.4:71515888-71515907 MS.gene81045:intron 40.0%
!!! CTTTTAGCGGTTTTTTGGGT+AGG - chr8.4:71517158-71517177 MS.gene81045:intron 40.0%
!!! GTTTTTTGGGTAGGTTGGTT+GGG - chr8.4:71517167-71517186 MS.gene81045:intron 40.0%
AGTAGTGTTTACACTGCCAG+TGG + chr8.4:71517418-71517437 None:intergenic 45.0%
CAGTGTGTACTTCACAAAGG+TGG - chr8.4:71515571-71515590 MS.gene81045:intron 45.0%
CCACAGGAGAAGACTTGAAA+AGG - chr8.4:71517712-71517731 MS.gene81045:intron 45.0%
CGCCACTCAAGAATATCACT+TGG + chr8.4:71515722-71515741 None:intergenic 45.0%
CTGGTCAAGATAAAAGTCCG+AGG - chr8.4:71517664-71517683 MS.gene81045:intron 45.0%
CTTATGAACACCTACAACGG+GGG + chr8.4:71517300-71517319 None:intergenic 45.0%
GAAAAGGGTTGAGGGATTGA+AGG - chr8.4:71517728-71517747 MS.gene81045:intron 45.0%
GACCTTGATACAGACCACAT+TGG + chr8.4:71516550-71516569 None:intergenic 45.0%
GCGAGGAGAAACAGAAAACA+AGG - chr8.4:71517753-71517772 MS.gene81045:intron 45.0%
GCTTATGAACACCTACAACG+GGG + chr8.4:71517301-71517320 None:intergenic 45.0%
GTGCTCTATACTCCTTCTGA+AGG + chr8.4:71515242-71515261 None:intergenic 45.0%
GTTGTACTTCTCCACGTACT+CGG + chr8.4:71517592-71517611 None:intergenic 45.0%
TACCGGGCTTCTTTCATTCA+TGG - chr8.4:71516751-71516770 MS.gene81045:intron 45.0%
TACGTATTGGAAGGAAGCGA+GGG - chr8.4:71516049-71516068 MS.gene81045:intron 45.0%
TGCCATAACAACCCCAAAGA+TGG + chr8.4:71517811-71517830 None:intergenic 45.0%
TTACGTATTGGAAGGAAGCG+AGG - chr8.4:71516048-71516067 MS.gene81045:intron 45.0%
TTCCTGAATGTTGCACTGCA+AGG + chr8.4:71517561-71517580 None:intergenic 45.0%
TTCCTTGCAGTGCAACATTC+AGG - chr8.4:71517556-71517575 MS.gene81045:intron 45.0%
TTGCGACCAGTTGGTCATAT+GGG + chr8.4:71515864-71515883 None:intergenic 45.0%
TTGTACTTCTCCACGTACTC+GGG + chr8.4:71517591-71517610 None:intergenic 45.0%
!! CTCCATCTTTGGGGTTGTTA+TGG - chr8.4:71517806-71517825 MS.gene81045:CDS 45.0%
!!! CCTTTTCAAGTCTTCTCCTG+TGG + chr8.4:71517715-71517734 None:intergenic 45.0%
!!! GGTTTTTTGGGTAGGTTGGT+TGG - chr8.4:71517166-71517185 MS.gene81045:intron 45.0%
!!! TAGCGGTTTTTTGGGTAGGT+TGG - chr8.4:71517162-71517181 MS.gene81045:intron 45.0%
AGAGCCCGAGAGCAAAAGTA+AGG + chr8.4:71515896-71515915 None:intergenic 50.0%
ATGCATCAAGCGCCTTCAGA+AGG - chr8.4:71515227-71515246 MS.gene81045:CDS 50.0%
ATGGATACCAGTCCAACCAC+TGG - chr8.4:71517399-71517418 MS.gene81045:intron 50.0%
GCATGACAACACCTAATGGG+CGG - chr8.4:71516367-71516386 MS.gene81045:intron 50.0%
GGAGCCAGTTTCCCATATTG+TGG - chr8.4:71515685-71515704 MS.gene81045:intron 50.0%
GTGTTTACACTGCCAGTGGT+TGG + chr8.4:71517414-71517433 None:intergenic 50.0%
GTTGCGACCAGTTGGTCATA+TGG + chr8.4:71515865-71515884 None:intergenic 50.0%
TGAAGGACGGGCCACAATAT+GGG + chr8.4:71515699-71515718 None:intergenic 50.0%
TGTACTTCTCCACGTACTCG+GGG + chr8.4:71517590-71517609 None:intergenic 50.0%
TGTGTCATGAACCGCCCATT+AGG + chr8.4:71516381-71516400 None:intergenic 50.0%
TTGAGGGATTGAAGGATGCG+AGG - chr8.4:71517736-71517755 MS.gene81045:intron 50.0%
TTGTTAAGCTCCCCCGTTGT+AGG - chr8.4:71517287-71517306 MS.gene81045:intron 50.0%
! TGACCAGTCTCTGATGACGT+TGG + chr8.4:71517651-71517670 None:intergenic 50.0%
!! ACAAGAAGGCACCTGATTCC+AGG + chr8.4:71516274-71516293 None:intergenic 50.0%
!! TTGGGTAGGTTGGTTGGGAT+GGG - chr8.4:71517172-71517191 MS.gene81045:intron 50.0%
!! TTTGGGTAGGTTGGTTGGGA+TGG - chr8.4:71517171-71517190 MS.gene81045:intron 50.0%
AGCGAGGGAACACCTTTCTC+AGG - chr8.4:71516064-71516083 MS.gene81045:intron 55.0%
CAGCCAACGTCATCAGAGAC+TGG - chr8.4:71517645-71517664 MS.gene81045:intron 55.0%
CGGGCCACAATATGGGAAAC+TGG + chr8.4:71515692-71515711 None:intergenic 55.0%
GAAGATGTTCCCCGAGTACG+TGG - chr8.4:71517578-71517597 MS.gene81045:intron 55.0%
GTGAAGGACGGGCCACAATA+TGG + chr8.4:71515700-71515719 None:intergenic 55.0%
TACACTGCCAGTGGTTGGAC+TGG + chr8.4:71517409-71517428 None:intergenic 55.0%
TTTGCTGCGTTGCGACCAGT+TGG + chr8.4:71515873-71515892 None:intergenic 55.0%
!! AGAAGGCACCTGATTCCAGG+AGG + chr8.4:71516271-71516290 None:intergenic 55.0%
!! GTAGGTTGGTTGGGATGGGA+GGG - chr8.4:71517176-71517195 MS.gene81045:intron 55.0%
!! TAGGTTGGTTGGGATGGGAG+GGG - chr8.4:71517177-71517196 MS.gene81045:intron 55.0%
!! GGTAGGTTGGTTGGGATGGG+AGG - chr8.4:71517175-71517194 MS.gene81045:intron 60.0%


Chromosome Type Strat End Strand Name
chr8.4 gene 71515213 71517851 71515213 ID=MS.gene81045
chr8.4 mRNA 71515213 71517851 71515213 ID=MS.gene81045.t1;Parent=MS.gene81045
chr8.4 exon 71517795 71517851 71517795 ID=MS.gene81045.t1.exon1;Parent=MS.gene81045.t1
chr8.4 CDS 71517795 71517851 71517795 ID=cds.MS.gene81045.t1;Parent=MS.gene81045.t1
chr8.4 exon 71517324 71517378 71517324 ID=MS.gene81045.t1.exon2;Parent=MS.gene81045.t1
chr8.4 CDS 71517324 71517378 71517324 ID=cds.MS.gene81045.t1;Parent=MS.gene81045.t1
chr8.4 exon 71516979 71517017 71516979 ID=MS.gene81045.t1.exon3;Parent=MS.gene81045.t1
chr8.4 CDS 71516979 71517017 71516979 ID=cds.MS.gene81045.t1;Parent=MS.gene81045.t1
chr8.4 exon 71516783 71516846 71516783 ID=MS.gene81045.t1.exon4;Parent=MS.gene81045.t1
chr8.4 CDS 71516783 71516846 71516783 ID=cds.MS.gene81045.t1;Parent=MS.gene81045.t1
chr8.4 exon 71516635 71516696 71516635 ID=MS.gene81045.t1.exon5;Parent=MS.gene81045.t1
chr8.4 CDS 71516635 71516696 71516635 ID=cds.MS.gene81045.t1;Parent=MS.gene81045.t1
chr8.4 exon 71516498 71516537 71516498 ID=MS.gene81045.t1.exon6;Parent=MS.gene81045.t1
chr8.4 CDS 71516498 71516537 71516498 ID=cds.MS.gene81045.t1;Parent=MS.gene81045.t1
chr8.4 exon 71516292 71516319 71516292 ID=MS.gene81045.t1.exon7;Parent=MS.gene81045.t1
chr8.4 CDS 71516292 71516319 71516292 ID=cds.MS.gene81045.t1;Parent=MS.gene81045.t1
chr8.4 exon 71515574 71515665 71515574 ID=MS.gene81045.t1.exon8;Parent=MS.gene81045.t1
chr8.4 CDS 71515574 71515665 71515574 ID=cds.MS.gene81045.t1;Parent=MS.gene81045.t1
chr8.4 exon 71515213 71515498 71515213 ID=MS.gene81045.t1.exon9;Parent=MS.gene81045.t1
chr8.4 CDS 71515213 71515498 71515213 ID=cds.MS.gene81045.t1;Parent=MS.gene81045.t1
Gene Sequence

>MS.gene81045

ATGGCGGAGAAAGCATGCATCAAGCGCCTTCAGAAGGAGTATAGAGCACTTTGTAAAGTAAGTGCATAATTTTTACTTTTCCGACAAAAATTGCTCTTCACTATTTATTTTTATTTATGGTTCCAATGCTTATTTTGTTGTGCAGCTATATAGTTAGCTTGTTCTGTGATCATTGGTTTGTCTCCTCTCTATTCTTGTGTATTTATGTATCTGGGCTTAGTATTTTGATGTTGTTTGTGGCCGATGAAATGTTTATAGCATGAATGACTGGGAACACATCATCCTATATATGTTTCCTTTCTCCTCTTAATAGTGTGTCTATAGTTTCTGAATAATTGTTTCATGATTGGTTAGGCTACAGTGTGTACTTCACAAAGGTGGATTGTTTCAGCCTGTATCAATTGCCTAGATCATCATAATATTTGAAGATTATGTCAACTCGATAATGCTTAATTTTATTACTGTATTTGCAGGAGCCAGTTTCCCATATTGTGGCCCGTCCTTCACCAAGTGATATTCTTGAGTGGCGTAAGTTTTGTTTCATACTGTCACATTTCATATATGATTTTATGACAAGCTCTAATATCCAAAAATGGGAAAACAGAATATGTTGAATCTTTGGTACATGTAATCATAAACGATGTAAAACCCATATGACCAACTGGTCGCAACGCAGCAAACCTTACTTTTGCTCTCGGGCTCTTTTTCCTTAATACTACTATATTGTCAGCAAGGAAGGATCAAAATATTGTATTGTCAGCAACTTCATTGTAATTTATTTGTTAGCTAGTGGTTGATACTTGATGCTGATCTTATTACGTGTTCATATCTCAGATTACGTATTGGAAGGAAGCGAGGGAACACCTTTCTCAGGTTTAGCAAATTATGATTGTTGCAGATTGATATTTTGTTTCAGCTGTATTGTGTGTTGGTTTTGCAGTTCCAACACCCAGTTTATTACTATCTCAACTTATATTGTATTTACGTTTTTTGTTCGCTTTTTAGGTGGATATTACTATGGAAAAATCAAGTTTCCTCAGGAATATCCTTATAAACCTCCTGGAATCAGGTGCCTTCTTGTTGCAGCATTCTTGATCATTCGAATTTTCATGTATTTGATCTTTAATGACCAAGTTCATACTTTTTATAATGTAGCATGACAACACCTAATGGGCGGTTCATGACACAGAAAAAGATCTGTTTATCAATGAGCGATTGTAAGTTCTTTTACCCATTGGAAGACAAACCGATTTGTATCATAGTTACCCATATTGCTACAGTTTAATTTTTCTGTGGGGTTTTCTGTTTTTGCAGTTCATCCTGAAAGTTGGAATCCAATGTGGTCTGTATCAAGGTCAGTATGTTCAAGTTTTGAAGTTCTTTTATGTGGTTTACTCCCTTTTATGTTTTAATTTTTTCTTTTGAAATTTGGTTGTATTGTTTGCACTAGGGAATGGTATATGACTATATATGTGTTCATTATTATTTCGTAGTTTCATACTAATAATGATGTTTCCAATTTATGAATGCAGCATACTTACCGGGCTTCTTTCATTCATGGTATGTTATTATGTTATGGTTTCTTCATATTCTAATTGAACTCTGGTTTCTTCCATCTCATATGGCATTTGTTTGCTCATAAGATATTGGGCATGTTTGTTGCAGATTATAGAATAAATAATTTTGAGATTTTAAAAAAAGCAGAAGTTATTTTGCGTTTGTTTACCATAAGGAAAATCACTCTTTTTAAGATAAAAAACCATCAACAATGATTTCAAAGAGAAACTACTCAAAACAACTTCTTGTTTAAAACATCTTTTAGATTTTTTTTTTTAGATTCTCATTTGTTTAAGAATATGTAATAAATGAATAAAAATTCCTAAAATTGTTGTTCCGAAAAGGGTTTTTCATAAAAAAATGGCCCATATCACTCTTGCATTTGCCTCTTTTAGCGGTTTTTTGGGTAGGTTGGTTGGGATGGGAGGGGATCTCAAGTTTGAGTAGCCATAGTAGTCTTTGTTGTATACTTGTACGCATAATAACGGCTTAACAAAAGCTAATACAACTTTCAAACTTGTTAAGCTCCCCCGTTGTAGGTGTTCATAAGCTGTTGAGCCATTTAATATAAAGGAAAATGTTATCAGCTTGTTATTCTTCACGATGTATGACAGACTTCTCTTTTGCAGATGGATACCAGTCCAACCACTGGCAGTGTAAACACTACTACTGCTGAGAAGCAGCGTCTAGCAAAATCTTCAATGTCTTTCAATTGTAAGAAGTAAGTATACCGCACCATCAACATTGAGCAATGTCTCTGATTTGTGTTCCACAATTAATGGCTCTTTCCTTGCAGTGCAACATTCAGGAAGATGTTCCCCGAGTACGTGGAGAAGTACAACAAGCAGCAGCTTTCTGAGCAAGTTACTTCTGAGCAGCCAACGTCATCAGAGACTGGTCAAGATAAAAGTCCGAGGTCTGTTTTGGAAAACAATGTAGAGTCCACAGGAGAAGACTTGAAAAGGGTTGAGGGATTGAAGGATGCGAGGAGAAACAGAAAACAAGGATTTCCAACCTGGATGATGTTATTACTCTTCTCCATCTTTGGGGTTGTTATGGCATTACCTCTACTCCAGCTGTGA

Protein sequence

>MS.gene81045.t1

MAEKACIKRLQKEYRALCKEPVSHIVARPSPSDILEWHYVLEGSEGTPFSGGYYYGKIKFPQEYPYKPPGISMTTPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTTGSVNTTTAEKQRLAKSSMSFNCKNATFRKMFPEYVEKYNKQQLSEQVTSEQPTSSETGQDKSPRSVLENNVESTGEDLKRVEGLKDARRNRKQGFPTWMMLLLFSIFGVVMALPLLQL