Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81087.t1 | XP_003603420.1 | 98.2 | 219 | 4 | 0 | 73 | 291 | 112 | 330 | 4.20E-112 | 414.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81087.t1 | Q8H0V5 | 58.7 | 167 | 69 | 0 | 118 | 284 | 185 | 351 | 1.5e-46 | 188.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81087.t1 | G7JB43 | 98.2 | 219 | 4 | 0 | 73 | 291 | 112 | 330 | 3.0e-112 | 414.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene81087.t1 | TF | HB-other |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050404 | MS.gene81087 | 0.833715 | 4.55E-56 | -1.69E-46 |
| MS.gene050529 | MS.gene81087 | 0.805443 | 1.33E-49 | -1.69E-46 |
| MS.gene050812 | MS.gene81087 | 0.814934 | 1.20E-51 | -1.69E-46 |
| MS.gene051171 | MS.gene81087 | 0.82783 | 1.26E-54 | -1.69E-46 |
| MS.gene051242 | MS.gene81087 | 0.823911 | 1.07E-53 | -1.69E-46 |
| MS.gene051244 | MS.gene81087 | 0.817236 | 3.66E-52 | -1.69E-46 |
| MS.gene053330 | MS.gene81087 | 0.809235 | 2.09E-50 | -1.69E-46 |
| MS.gene055412 | MS.gene81087 | 0.810549 | 1.09E-50 | -1.69E-46 |
| MS.gene056633 | MS.gene81087 | 0.821042 | 4.98E-53 | -1.69E-46 |
| MS.gene056664 | MS.gene81087 | 0.848136 | 7.43E-60 | -1.69E-46 |
| MS.gene056796 | MS.gene81087 | 0.821832 | 3.27E-53 | -1.69E-46 |
| MS.gene056897 | MS.gene81087 | 0.804979 | 1.67E-49 | -1.69E-46 |
| MS.gene057124 | MS.gene81087 | 0.805377 | 1.37E-49 | -1.69E-46 |
| MS.gene057196 | MS.gene81087 | 0.811447 | 6.97E-51 | -1.69E-46 |
| MS.gene058233 | MS.gene81087 | 0.863362 | 2.63E-64 | -1.69E-46 |
| MS.gene058276 | MS.gene81087 | 0.85236 | 4.86E-61 | -1.69E-46 |
| MS.gene058746 | MS.gene81087 | 0.843928 | 1.04E-58 | -1.69E-46 |
| MS.gene059894 | MS.gene81087 | 0.813687 | 2.26E-51 | -1.69E-46 |
| MS.gene060407 | MS.gene81087 | 0.808211 | 3.46E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81087.t1 | MTR_3g107530 | 93.727 | 271 | 11 | 1 | 27 | 291 | 60 | 330 | 3.36e-169 | 472 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81087.t1 | AT5G11270 | 48.659 | 261 | 125 | 1 | 33 | 284 | 91 | 351 | 1.56e-66 | 211 |
Find 47 sgRNAs with CRISPR-Local
Find 161 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAATCTCCGGGCGTAGTTTC+AGG | 0.263805 | 3.4:+93404435 | None:intergenic |
| GGTGATACTGCTGATGGTTT+AGG | 0.275225 | 3.4:+93404456 | None:intergenic |
| AAAGCATAGAATAATAAATT+AGG | 0.315146 | 3.4:+93405943 | None:intergenic |
| TTCTCGAAAGAGATTGAAAA+AGG | 0.338696 | 3.4:-93404319 | MS.gene81087:CDS |
| GATCATGCTCATGCAGAATC+TGG | 0.343580 | 3.4:-93404390 | MS.gene81087:CDS |
| GCTGATGGTTTAGGTTCATC+AGG | 0.425177 | 3.4:+93404465 | None:intergenic |
| TTCATGACATGCAACAGAAT+TGG | 0.427701 | 3.4:-93404344 | MS.gene81087:CDS |
| TTCTTTATGAAAAGAATCTC+CGG | 0.439788 | 3.4:+93404422 | None:intergenic |
| CGCGGAGAACAGTTATTAAG+TGG | 0.452000 | 3.4:-93403218 | MS.gene81087:CDS |
| TTCTGTTGCATGTCATGAAT+AGG | 0.457484 | 3.4:+93404348 | None:intergenic |
| TTGGCTAGAGCATTGAAAAC+TGG | 0.460688 | 3.4:-93405586 | MS.gene81087:CDS |
| ATAGGTAAGTTAGACTTCTT+CGG | 0.466152 | 3.4:+93404366 | None:intergenic |
| CGTGAGTTGGAAGGTGTGTT+GGG | 0.479759 | 3.4:-93405733 | MS.gene81087:CDS |
| TCATTAGCAGACTGCTGGTA+AGG | 0.483094 | 3.4:+93403150 | None:intergenic |
| TTGTTTCATTAGCAGACTGC+TGG | 0.483884 | 3.4:+93403145 | None:intergenic |
| TGTTTGAAAAGCAACTCAAA+TGG | 0.492775 | 3.4:+93405850 | None:intergenic |
| ATTCGCTGAAGCTTAGAACT+TGG | 0.492933 | 3.4:-93405621 | MS.gene81087:CDS |
| AAAGGCTTACACTTAGTTTG+CGG | 0.505407 | 3.4:+93405560 | None:intergenic |
| TGCTTTGTTAGAACGTGAGT+TGG | 0.513640 | 3.4:-93405746 | MS.gene81087:CDS |
| CTCAGCATCAGAAGACTTGG+TGG | 0.517452 | 3.4:+93404498 | None:intergenic |
| AGCTCTATCAAGACAGAGCT+CGG | 0.525713 | 3.4:+93404548 | None:intergenic |
| ACGTGAGTTGGAAGGTGTGT+TGG | 0.531369 | 3.4:-93405734 | MS.gene81087:CDS |
| AGACAAACGTGCCGAGGAGG+GGG | 0.542683 | 3.4:-93403190 | MS.gene81087:CDS |
| GTTTCAGGTGATACTGCTGA+TGG | 0.555775 | 3.4:+93404450 | None:intergenic |
| AGGCTCAGCATCAGAAGACT+TGG | 0.557597 | 3.4:+93404495 | None:intergenic |
| TGGTAAGGAAGACGATGCTC+TGG | 0.560826 | 3.4:+93403165 | None:intergenic |
| AAATTGACTCATGTTACAGA+GGG | 0.567201 | 3.4:-93405889 | MS.gene81087:CDS |
| AACTTGGCAATTGAATACAT+TGG | 0.575518 | 3.4:-93405605 | MS.gene81087:CDS |
| AGCATCAGAAGACTTGGTGG+AGG | 0.576518 | 3.4:+93404501 | None:intergenic |
| TAGGTTCATCAGGAATCGAT+AGG | 0.584575 | 3.4:+93404475 | None:intergenic |
| TCTTTATGAAAAGAATCTCC+GGG | 0.584998 | 3.4:+93404423 | None:intergenic |
| GTATCACCTGAAACTACGCC+CGG | 0.589871 | 3.4:-93404441 | MS.gene81087:CDS |
| GAAGACAAACGTGCCGAGGA+GGG | 0.595141 | 3.4:-93403192 | MS.gene81087:CDS |
| AAAGGCTCAACTTGACACGC+TGG | 0.611700 | 3.4:-93404301 | MS.gene81087:CDS |
| TTGTTAGAACGTGAGTTGGA+AGG | 0.619119 | 3.4:-93405742 | MS.gene81087:CDS |
| TGAAGACAAACGTGCCGAGG+AGG | 0.619168 | 3.4:-93403193 | MS.gene81087:CDS |
| AAGACAAACGTGCCGAGGAG+GGG | 0.620622 | 3.4:-93403191 | MS.gene81087:CDS |
| TGCATGTTTCAAACATTCCG+CGG | 0.630435 | 3.4:-93403236 | MS.gene81087:CDS |
| AAAATTGACTCATGTTACAG+AGG | 0.638213 | 3.4:-93405890 | MS.gene81087:CDS |
| GCATCAGAAGACTTGGTGGA+GGG | 0.649310 | 3.4:+93404502 | None:intergenic |
| GTTTGAAGACAAACGTGCCG+AGG | 0.651860 | 3.4:-93403196 | MS.gene81087:CDS |
| TGTTACAGAGGGGAATGACG+AGG | 0.686418 | 3.4:-93405878 | MS.gene81087:CDS |
| TACAGAGGGGAATGACGAGG+AGG | 0.700089 | 3.4:-93405875 | MS.gene81087:CDS |
| ACAGATATCAGCGAAACACA+AGG | 0.708447 | 3.4:-93405685 | MS.gene81087:CDS |
| CACTTAATAACTGTTCTCCG+CGG | 0.713242 | 3.4:+93403219 | None:intergenic |
| GAGTTTACATGAGATCAAAG+CGG | 0.731573 | 3.4:-93404275 | MS.gene81087:CDS |
| AATTGACTCATGTTACAGAG+GGG | 0.739510 | 3.4:-93405888 | MS.gene81087:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGCATAGAATAATAAATT+AGG | + | chr3.4:93403164-93403183 | None:intergenic | 15.0% |
| !! | AATTAAACTCAAAACAAATT+AGG | + | chr3.4:93403588-93403607 | None:intergenic | 15.0% |
| !! | AATTTAATAGTGAGATTTAT+TGG | + | chr3.4:93405552-93405571 | None:intergenic | 15.0% |
| !! | CTAAAAATACAAAATTCAAA+AGG | + | chr3.4:93403565-93403584 | None:intergenic | 15.0% |
| !! | AAACTTGTGATATTTAAGTA+TGG | + | chr3.4:93404875-93404894 | None:intergenic | 20.0% |
| !! | ACATTTGATATATTTAGCAT+CGG | - | chr3.4:93405358-93405377 | MS.gene81087:intron | 20.0% |
| !! | GAATAAAAAGTTTAAGCAAA+TGG | + | chr3.4:93403923-93403942 | None:intergenic | 20.0% |
| !! | TTAATTCATATATACAACGT+TGG | + | chr3.4:93403669-93403688 | None:intergenic | 20.0% |
| !! | TTTATATTAAGAATCTCAGA+TGG | - | chr3.4:93404327-93404346 | MS.gene81087:CDS | 20.0% |
| !!! | AAGATTTTACTAGTTATGTA+TGG | + | chr3.4:93404972-93404991 | None:intergenic | 20.0% |
| !!! | CTTAAATATCACAAGTTTTA+TGG | - | chr3.4:93404877-93404896 | MS.gene81087:intron | 20.0% |
| ! | AAACTTGTGATATTGAAGTA+TGG | + | chr3.4:93404933-93404952 | None:intergenic | 25.0% |
| ! | AATAGAATATATGCACAAAG+AGG | + | chr3.4:93405666-93405685 | None:intergenic | 25.0% |
| ! | AATGATGTAGAAAAAAGTAG+TGG | - | chr3.4:93403446-93403465 | MS.gene81087:intron | 25.0% |
| ! | AATGTTAGTAGTTAGTTAGT+TGG | - | chr3.4:93404054-93404073 | MS.gene81087:intron | 25.0% |
| ! | ACATAACTTCTGATTTAAGA+GGG | + | chr3.4:93405059-93405078 | None:intergenic | 25.0% |
| ! | AGTTAACAAGTTGTGAAATA+AGG | + | chr3.4:93405788-93405807 | None:intergenic | 25.0% |
| ! | ATATATACAACGTTGGTATT+TGG | + | chr3.4:93403662-93403681 | None:intergenic | 25.0% |
| ! | ATGATATGAATAGGATTACT+TGG | - | chr3.4:93403766-93403785 | MS.gene81087:intron | 25.0% |
| ! | TAGTATATTTGCCTTTAATC+AGG | + | chr3.4:93404223-93404242 | None:intergenic | 25.0% |
| ! | TTCTTTATGAAAAGAATCTC+CGG | + | chr3.4:93404685-93404704 | None:intergenic | 25.0% |
| !! | CTAGTTGATATATTAAAGAG+TGG | - | chr3.4:93404240-93404259 | MS.gene81087:intron | 25.0% |
| !! | CTTCAATATCACAAGTTTTA+TGG | - | chr3.4:93404935-93404954 | MS.gene81087:intron | 25.0% |
| !! | GTGACTTTTTAATCTAATGA+TGG | - | chr3.4:93405586-93405605 | MS.gene81087:CDS | 25.0% |
| AAATGCAGATCATATCATAC+AGG | + | chr3.4:93403841-93403860 | None:intergenic | 30.0% | |
| AAATGGGGTAAATGTCATAT+AGG | - | chr3.4:93405333-93405352 | MS.gene81087:intron | 30.0% | |
| AACTTGGCAATTGAATACAT+TGG | - | chr3.4:93403499-93403518 | MS.gene81087:intron | 30.0% | |
| AATGCTATAATATGCAGTGA+TGG | + | chr3.4:93405714-93405733 | None:intergenic | 30.0% | |
| AATGGGGTAAATGTCATATA+GGG | - | chr3.4:93405334-93405353 | MS.gene81087:intron | 30.0% | |
| ATAGGTAAGTTAGACTTCTT+CGG | + | chr3.4:93404741-93404760 | None:intergenic | 30.0% | |
| ATCATACAGGTATTTCATGT+AGG | + | chr3.4:93403828-93403847 | None:intergenic | 30.0% | |
| ATGGCAAGTTTAACTATGTA+TGG | + | chr3.4:93404914-93404933 | None:intergenic | 30.0% | |
| CCTTATCAATGAATGACAAA+AGG | + | chr3.4:93403997-93404016 | None:intergenic | 30.0% | |
| GACATAACTTCTGATTTAAG+AGG | + | chr3.4:93405060-93405079 | None:intergenic | 30.0% | |
| GTGTATCAGATGATATGAAT+AGG | - | chr3.4:93403757-93403776 | MS.gene81087:intron | 30.0% | |
| TCTTAAACACTTGTCTTGTA+TGG | + | chr3.4:93403872-93403891 | None:intergenic | 30.0% | |
| TCTTTATGAAAAGAATCTCC+GGG | + | chr3.4:93404684-93404703 | None:intergenic | 30.0% | |
| TGATGCTTGTATTAGTATTC+TGG | - | chr3.4:93405098-93405117 | MS.gene81087:intron | 30.0% | |
| TGGACGACTTGAAAATAAAT+GGG | - | chr3.4:93405317-93405336 | MS.gene81087:intron | 30.0% | |
| TGTTTGAAAAGCAACTCAAA+TGG | + | chr3.4:93403257-93403276 | None:intergenic | 30.0% | |
| TTAACATGTATTGCAAGTCT+TGG | + | chr3.4:93405254-93405273 | None:intergenic | 30.0% | |
| TTAAGAAACCAAAATGCTTG+TGG | - | chr3.4:93403886-93403905 | MS.gene81087:intron | 30.0% | |
| TTATCTGCAACAAATTCGAA+AGG | + | chr3.4:93404524-93404543 | None:intergenic | 30.0% | |
| TTCTCGAAAGAGATTGAAAA+AGG | - | chr3.4:93404785-93404804 | MS.gene81087:intron | 30.0% | |
| ! | AAAATTGACTCATGTTACAG+AGG | - | chr3.4:93403214-93403233 | MS.gene81087:CDS | 30.0% |
| ! | AAATTGACTCATGTTACAGA+GGG | - | chr3.4:93403215-93403234 | MS.gene81087:CDS | 30.0% |
| ! | ATACATCCAAGTTGAAGTTA+AGG | + | chr3.4:93404297-93404316 | None:intergenic | 30.0% |
| ! | CCTTTTGTCATTCATTGATA+AGG | - | chr3.4:93403994-93404013 | MS.gene81087:intron | 30.0% |
| !! | AGTGAGATTTATTGGTTCAA+TGG | + | chr3.4:93405544-93405563 | None:intergenic | 30.0% |
| !!! | TTACTTTTTCTTGTCCCTAA+AGG | + | chr3.4:93404174-93404193 | None:intergenic | 30.0% |
| ACCTTATATGCTTCTTTGTG+CGG | - | chr3.4:93405461-93405480 | MS.gene81087:intron | 35.0% | |
| AGCATACATGATGATACAAC+TGG | + | chr3.4:93405148-93405167 | None:intergenic | 35.0% | |
| AGGAGAAGGAAAAAGTAAAC+TGG | - | chr3.4:93404014-93404033 | MS.gene81087:intron | 35.0% | |
| AGTAGTTAGTTAGTTGGTCA+GGG | - | chr3.4:93404060-93404079 | MS.gene81087:intron | 35.0% | |
| ATGGGGTAAATGTCATATAG+GGG | - | chr3.4:93405335-93405354 | MS.gene81087:intron | 35.0% | |
| CAAACACCTTAACTTCAACT+TGG | - | chr3.4:93404288-93404307 | MS.gene81087:CDS | 35.0% | |
| CAATCCCTAATGTTAACTTC+CGG | - | chr3.4:93404480-93404499 | MS.gene81087:CDS | 35.0% | |
| GAGTTTACATGAGATCAAAG+CGG | - | chr3.4:93404829-93404848 | MS.gene81087:intron | 35.0% | |
| GCATACATGATGATACAACT+GGG | + | chr3.4:93405147-93405166 | None:intergenic | 35.0% | |
| GGACGACTTGAAAATAAATG+GGG | - | chr3.4:93405318-93405337 | MS.gene81087:intron | 35.0% | |
| GGTGTTTGCAAGCAAATTAA+CGG | + | chr3.4:93404276-93404295 | None:intergenic | 35.0% | |
| GTCATTCATTGATAAGGAGA+AGG | - | chr3.4:93404000-93404019 | MS.gene81087:intron | 35.0% | |
| GTGGACGACTTGAAAATAAA+TGG | - | chr3.4:93405316-93405335 | MS.gene81087:intron | 35.0% | |
| TAGTAGTTAGTTAGTTGGTC+AGG | - | chr3.4:93404059-93404078 | MS.gene81087:intron | 35.0% | |
| TCATCTGATACACTTAGTTG+TGG | + | chr3.4:93403750-93403769 | None:intergenic | 35.0% | |
| TTCATGACATGCAACAGAAT+TGG | - | chr3.4:93404760-93404779 | MS.gene81087:intron | 35.0% | |
| TTCTGTTGCATGTCATGAAT+AGG | + | chr3.4:93404759-93404778 | None:intergenic | 35.0% | |
| ! | AAAGGCTTACACTTAGTTTG+CGG | + | chr3.4:93403547-93403566 | None:intergenic | 35.0% |
| ! | AATTGACTCATGTTACAGAG+GGG | - | chr3.4:93403216-93403235 | MS.gene81087:CDS | 35.0% |
| ! | ACTGTTTTCCACAAGCATTT+TGG | + | chr3.4:93403897-93403916 | None:intergenic | 35.0% |
| ! | ATGGCAAGTTTAACTTACAG+TGG | + | chr3.4:93404856-93404875 | None:intergenic | 35.0% |
| ! | CAAAGAAGCATATAAGGTGA+TGG | + | chr3.4:93405459-93405478 | None:intergenic | 35.0% |
| ! | TACTTGGTTTGAGTATGAAG+AGG | - | chr3.4:93403782-93403801 | MS.gene81087:intron | 35.0% |
| ! | TGGCAAGTTTAACTTACAGT+GGG | + | chr3.4:93404855-93404874 | None:intergenic | 35.0% |
| !! | GAGATTTATTGGTTCAATGG+TGG | + | chr3.4:93405541-93405560 | None:intergenic | 35.0% |
| !! | TACACTCCATTTTTCTAGTC+CGG | - | chr3.4:93405025-93405044 | MS.gene81087:intron | 35.0% |
| AAACAGGAAATGCTAGTAGG+AGG | - | chr3.4:93404084-93404103 | MS.gene81087:intron | 40.0% | |
| AAAGGAGTAGTGTAGTGGTT+TGG | + | chr3.4:93404156-93404175 | None:intergenic | 40.0% | |
| AAAGTGACAAGCATGTGTCT+TGG | - | chr3.4:93405735-93405754 | MS.gene81087:CDS | 40.0% | |
| AACAGGAAATGCTAGTAGGA+GGG | - | chr3.4:93404085-93404104 | MS.gene81087:intron | 40.0% | |
| AACCACTACACTACTCCTTT+AGG | - | chr3.4:93404156-93404175 | MS.gene81087:intron | 40.0% | |
| AATGACAAAAGGCCAAGTCA+AGG | + | chr3.4:93403986-93404005 | None:intergenic | 40.0% | |
| ACAGATATCAGCGAAACACA+AGG | - | chr3.4:93403419-93403438 | MS.gene81087:intron | 40.0% | |
| ACCACTACACTACTCCTTTA+GGG | - | chr3.4:93404157-93404176 | MS.gene81087:intron | 40.0% | |
| ATAAAGCGAGAAGGAAAGAG+AGG | - | chr3.4:93404402-93404421 | MS.gene81087:CDS | 40.0% | |
| ATTCGCTGAAGCTTAGAACT+TGG | - | chr3.4:93403483-93403502 | MS.gene81087:intron | 40.0% | |
| ATTTAAGAGGGAATTGCTGC+CGG | + | chr3.4:93405047-93405066 | None:intergenic | 40.0% | |
| CACTTAATAACTGTTCTCCG+CGG | + | chr3.4:93405888-93405907 | None:intergenic | 40.0% | |
| CATTGTAGTTCAAGACAGAC+AGG | + | chr3.4:93405823-93405842 | None:intergenic | 40.0% | |
| CTCCTGCTTAGAACTTCTTT+GGG | - | chr3.4:93404122-93404141 | MS.gene81087:intron | 40.0% | |
| GAGTCCGGAAGTTAACATTA+GGG | + | chr3.4:93404487-93404506 | None:intergenic | 40.0% | |
| GGAAAACAGGAAATGCTAGT+AGG | - | chr3.4:93404081-93404100 | MS.gene81087:intron | 40.0% | |
| GTAAACTTGATAGATCAGCC+AGG | - | chr3.4:93404190-93404209 | MS.gene81087:intron | 40.0% | |
| GTAGAAAAAAGTAGTGGCGA+TGG | - | chr3.4:93403452-93403471 | MS.gene81087:intron | 40.0% | |
| GTGAAACTGAGAAATGAGTC+CGG | + | chr3.4:93404502-93404521 | None:intergenic | 40.0% | |
| GTTCATGTGATAAAGCGAGA+AGG | - | chr3.4:93404393-93404412 | MS.gene81087:CDS | 40.0% | |
| TAAAGCGAGAAGGAAAGAGA+GGG | - | chr3.4:93404403-93404422 | MS.gene81087:CDS | 40.0% | |
| TAGGTTCATCAGGAATCGAT+AGG | + | chr3.4:93404632-93404651 | None:intergenic | 40.0% | |
| TAGTTCAAGACAGACAGGTA+AGG | + | chr3.4:93405818-93405837 | None:intergenic | 40.0% | |
| TCAAGCTAAGTGTCATATCG+TGG | - | chr3.4:93405297-93405316 | MS.gene81087:intron | 40.0% | |
| TCACTTGTGCACCATAGAAT+TGG | + | chr3.4:93405487-93405506 | None:intergenic | 40.0% | |
| TCCTGCTTAGAACTTCTTTG+GGG | - | chr3.4:93404123-93404142 | MS.gene81087:intron | 40.0% | |
| TGAGTCCGGAAGTTAACATT+AGG | + | chr3.4:93404488-93404507 | None:intergenic | 40.0% | |
| TGCATGTTTCAAACATTCCG+CGG | - | chr3.4:93405868-93405887 | MS.gene81087:CDS | 40.0% | |
| TTGTTTCATTAGCAGACTGC+TGG | + | chr3.4:93405962-93405981 | None:intergenic | 40.0% | |
| ! | AAGGTGATGGTTGACATTGT+GGG | + | chr3.4:93405446-93405465 | None:intergenic | 40.0% |
| ! | ACGATATGACACTTAGCTTG+AGG | + | chr3.4:93405298-93405317 | None:intergenic | 40.0% |
| ! | AGTAGTGTAGTGGTTTGGAT+TGG | + | chr3.4:93404151-93404170 | None:intergenic | 40.0% |
| ! | CAAAGAGGCTTTGTCTAACA+TGG | + | chr3.4:93405651-93405670 | None:intergenic | 40.0% |
| ! | TAAGGTGATGGTTGACATTG+TGG | + | chr3.4:93405447-93405466 | None:intergenic | 40.0% |
| ! | TGCTTTGTTAGAACGTGAGT+TGG | - | chr3.4:93403358-93403377 | MS.gene81087:intron | 40.0% |
| ! | TTGTTAGAACGTGAGTTGGA+AGG | - | chr3.4:93403362-93403381 | MS.gene81087:intron | 40.0% |
| !! | AGATGGATTTTCCTTGCAAG+GGG | - | chr3.4:93404344-93404363 | MS.gene81087:CDS | 40.0% |
| !! | CAGATGGATTTTCCTTGCAA+GGG | - | chr3.4:93404343-93404362 | MS.gene81087:CDS | 40.0% |
| !! | TCAGATGGATTTTCCTTGCA+AGG | - | chr3.4:93404342-93404361 | MS.gene81087:CDS | 40.0% |
| !! | TCTGATTTGCTTCCTTGACT+TGG | - | chr3.4:93403971-93403990 | MS.gene81087:intron | 40.0% |
| !! | TTGGCTAGAGCATTGAAAAC+TGG | - | chr3.4:93403518-93403537 | MS.gene81087:intron | 40.0% |
| ACTTGATAGATCAGCCAGGT+TGG | - | chr3.4:93404194-93404213 | MS.gene81087:intron | 45.0% | |
| AGCTCTATCAAGACAGAGCT+CGG | + | chr3.4:93404559-93404578 | None:intergenic | 45.0% | |
| ATTGAGCAGACAACTAGCAC+AGG | + | chr3.4:93404464-93404483 | None:intergenic | 45.0% | |
| CCTCCTGCTTAGAACTTCTT+TGG | - | chr3.4:93404121-93404140 | MS.gene81087:intron | 45.0% | |
| CGCGGAGAACAGTTATTAAG+TGG | - | chr3.4:93405886-93405905 | MS.gene81087:CDS | 45.0% | |
| CTTGATAGATCAGCCAGGTT+GGG | - | chr3.4:93404195-93404214 | MS.gene81087:intron | 45.0% | |
| GATCATGCTCATGCAGAATC+TGG | - | chr3.4:93404714-93404733 | MS.gene81087:intron | 45.0% | |
| GGTGATACTGCTGATGGTTT+AGG | + | chr3.4:93404651-93404670 | None:intergenic | 45.0% | |
| GTTAGTTGGTCAGGGAAAAC+AGG | - | chr3.4:93404068-93404087 | MS.gene81087:intron | 45.0% | |
| TCATTAGCAGACTGCTGGTA+AGG | + | chr3.4:93405957-93405976 | None:intergenic | 45.0% | |
| TCCCTAAAGGAGTAGTGTAG+TGG | + | chr3.4:93404161-93404180 | None:intergenic | 45.0% | |
| TCTTTGTGCGGCCAATTCTA+TGG | - | chr3.4:93405473-93405492 | MS.gene81087:intron | 45.0% | |
| TTGATAGATCAGCCAGGTTG+GGG | - | chr3.4:93404196-93404215 | MS.gene81087:intron | 45.0% | |
| ! | GCCGCACAAAGAAGCATATA+AGG | + | chr3.4:93405465-93405484 | None:intergenic | 45.0% |
| ! | GCTGATGGTTTAGGTTCATC+AGG | + | chr3.4:93404642-93404661 | None:intergenic | 45.0% |
| ! | GTTTCAGGTGATACTGCTGA+TGG | + | chr3.4:93404657-93404676 | None:intergenic | 45.0% |
| ! | TTGCTGCCGGACTAGAAAAA+TGG | + | chr3.4:93405034-93405053 | None:intergenic | 45.0% |
| !! | AAGTTCTAAGCAGGAGGTCT+AGG | + | chr3.4:93404118-93404137 | None:intergenic | 45.0% |
| !! | ACCCCAAAGAAGTTCTAAGC+AGG | + | chr3.4:93404127-93404146 | None:intergenic | 45.0% |
| !! | AGTTCTAAGCAGGAGGTCTA+GGG | + | chr3.4:93404117-93404136 | None:intergenic | 45.0% |
| !! | CCAAAGAAGTTCTAAGCAGG+AGG | + | chr3.4:93404124-93404143 | None:intergenic | 45.0% |
| AAAGGCTCAACTTGACACGC+TGG | - | chr3.4:93404803-93404822 | MS.gene81087:intron | 50.0% | |
| AGGCTCAGCATCAGAAGACT+TGG | + | chr3.4:93404612-93404631 | None:intergenic | 50.0% | |
| CTCAGCATCAGAAGACTTGG+TGG | + | chr3.4:93404609-93404628 | None:intergenic | 50.0% | |
| CTTTAATCAGGACCCCAACC+TGG | + | chr3.4:93404211-93404230 | None:intergenic | 50.0% | |
| GTATCACCTGAAACTACGCC+CGG | - | chr3.4:93404663-93404682 | MS.gene81087:intron | 50.0% | |
| GTGATGGTTGACATTGTGGG+AGG | + | chr3.4:93405443-93405462 | None:intergenic | 50.0% | |
| GTTTGAAGACAAACGTGCCG+AGG | - | chr3.4:93405908-93405927 | MS.gene81087:CDS | 50.0% | |
| TCAAACTTGCACCCCTTGCA+AGG | + | chr3.4:93404358-93404377 | None:intergenic | 50.0% | |
| TGGTAAGGAAGACGATGCTC+TGG | + | chr3.4:93405942-93405961 | None:intergenic | 50.0% | |
| TGTTACAGAGGGGAATGACG+AGG | - | chr3.4:93403226-93403245 | MS.gene81087:CDS | 50.0% | |
| ! | ACGTGAGTTGGAAGGTGTGT+TGG | - | chr3.4:93403370-93403389 | MS.gene81087:intron | 50.0% |
| ! | CAGGTTGGGGTCCTGATTAA+AGG | - | chr3.4:93404209-93404228 | MS.gene81087:intron | 50.0% |
| ! | CGTGAGTTGGAAGGTGTGTT+GGG | - | chr3.4:93403371-93403390 | MS.gene81087:intron | 50.0% |
| ! | TGCAAGGGGTGCAAGTTTGA+AGG | - | chr3.4:93404358-93404377 | MS.gene81087:CDS | 50.0% |
| !! | AGCATCAGAAGACTTGGTGG+AGG | + | chr3.4:93404606-93404625 | None:intergenic | 50.0% |
| !! | GCATCAGAAGACTTGGTGGA+GGG | + | chr3.4:93404605-93404624 | None:intergenic | 50.0% |
| AAGACAAACGTGCCGAGGAG+GGG | - | chr3.4:93405913-93405932 | MS.gene81087:CDS | 55.0% | |
| GAAGACAAACGTGCCGAGGA+GGG | - | chr3.4:93405912-93405931 | MS.gene81087:CDS | 55.0% | |
| GAATCTCCGGGCGTAGTTTC+AGG | + | chr3.4:93404672-93404691 | None:intergenic | 55.0% | |
| TACAGAGGGGAATGACGAGG+AGG | - | chr3.4:93403229-93403248 | MS.gene81087:CDS | 55.0% | |
| TGAAGACAAACGTGCCGAGG+AGG | - | chr3.4:93405911-93405930 | MS.gene81087:CDS | 55.0% | |
| AGACAAACGTGCCGAGGAGG+GGG | - | chr3.4:93405914-93405933 | MS.gene81087:CDS | 60.0% | |
| !! | ATGCTCTGGAACCCCCTCCT+CGG | + | chr3.4:93405928-93405947 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 93403140 | 93405986 | 93403140 | ID=MS.gene81087 |
| chr3.4 | mRNA | 93403140 | 93405986 | 93403140 | ID=MS.gene81087.t1;Parent=MS.gene81087 |
| chr3.4 | exon | 93405570 | 93405986 | 93405570 | ID=MS.gene81087.t1.exon1;Parent=MS.gene81087.t1 |
| chr3.4 | CDS | 93405570 | 93405986 | 93405570 | ID=cds.MS.gene81087.t1;Parent=MS.gene81087.t1 |
| chr3.4 | exon | 93404269 | 93404586 | 93404269 | ID=MS.gene81087.t1.exon2;Parent=MS.gene81087.t1 |
| chr3.4 | CDS | 93404269 | 93404586 | 93404269 | ID=cds.MS.gene81087.t1;Parent=MS.gene81087.t1 |
| chr3.4 | exon | 93403140 | 93403280 | 93403140 | ID=MS.gene81087.t1.exon3;Parent=MS.gene81087.t1 |
| chr3.4 | CDS | 93403140 | 93403280 | 93403140 | ID=cds.MS.gene81087.t1;Parent=MS.gene81087.t1 |
| Gene Sequence |
| Protein sequence |
