Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81304.t1 | AET00800.1 | 96.5 | 344 | 12 | 0 | 1 | 344 | 74 | 417 | 1.20E-182 | 649 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81304.t1 | Q55C80 | 29.6 | 371 | 211 | 12 | 7 | 340 | 10 | 367 | 1.1e-38 | 162.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81304.t1 | B7FK54 | 96.5 | 344 | 12 | 0 | 1 | 344 | 1 | 344 | 8.6e-183 | 649.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049825 | MS.gene81304 | 0.804599 | 2.00E-49 | -1.69E-46 |
| MS.gene055808 | MS.gene81304 | 0.839653 | 1.39E-57 | -1.69E-46 |
| MS.gene056091 | MS.gene81304 | 0.802459 | 5.55E-49 | -1.69E-46 |
| MS.gene057705 | MS.gene81304 | 0.807403 | 5.14E-50 | -1.69E-46 |
| MS.gene060429 | MS.gene81304 | 0.808622 | 2.83E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene067859 | MS.gene81304 | PPI |
| MS.gene08162 | MS.gene81304 | PPI |
| MS.gene41778 | MS.gene81304 | PPI |
| MS.gene042467 | MS.gene81304 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81304.t1 | MTR_5g096040 | 96.512 | 344 | 12 | 0 | 1 | 344 | 74 | 417 | 0.0 | 699 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81304.t1 | AT5G63010 | 60.116 | 346 | 128 | 4 | 1 | 344 | 1 | 338 | 4.64e-153 | 434 |
Find 87 sgRNAs with CRISPR-Local
Find 169 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCCAGTTAATAAGGTATT+TGG | 0.087837 | 5.2:-80691485 | None:intergenic |
| TTTGCAATTGTTGCTATTAA+AGG | 0.230758 | 5.2:+80691656 | MS.gene81304:CDS |
| TGATATCCATCAGCCAAATT+TGG | 0.233877 | 5.2:+80691334 | MS.gene81304:CDS |
| GAACTCTAAGGTCCACAAAA+TGG | 0.247499 | 5.2:+80691430 | MS.gene81304:CDS |
| ATCATAGCTTCCAGTTAATA+AGG | 0.268520 | 5.2:-80691492 | None:intergenic |
| TAACTCTATGTGCTTGTATC+TGG | 0.275517 | 5.2:+80691175 | MS.gene81304:CDS |
| CTAATTGAAGTCTCATTAAC+AGG | 0.277252 | 5.2:-80691554 | None:intergenic |
| GACCCAAATACCTTATTAAC+TGG | 0.308590 | 5.2:+80691482 | MS.gene81304:CDS |
| CTTCATCCAAGGCCTTGTTT+TGG | 0.318096 | 5.2:+80691613 | MS.gene81304:CDS |
| GAGCCAGTATATACCAAATT+TGG | 0.327127 | 5.2:-80691347 | None:intergenic |
| TTAGCTTAGGTGGAGGAGTT+TGG | 0.334473 | 5.2:+80691573 | MS.gene81304:CDS |
| TTCTCTTCATGAATCCAATC+TGG | 0.334547 | 5.2:+80691259 | MS.gene81304:CDS |
| CTCTTCTTGTATTTCCAGAT+TGG | 0.335556 | 5.2:-80691273 | None:intergenic |
| TTCCAGTTAATAAGGTATTT+GGG | 0.361076 | 5.2:-80691484 | None:intergenic |
| CAGCCAAATTTGGTATATAC+TGG | 0.372578 | 5.2:+80691344 | MS.gene81304:CDS |
| CTTTCTATGACAAACTTGTC+AGG | 0.398507 | 5.2:+80691801 | MS.gene81304:CDS |
| GTAGCACATTGCTATTTAGA+AGG | 0.402998 | 5.2:+80689711 | MS.gene81304:CDS |
| TGAAATGCTTCCAGATCTAC+TGG | 0.403251 | 5.2:-80689823 | None:intergenic |
| TCTTGTATTTAAGAACTCTA+AGG | 0.412316 | 5.2:+80691418 | MS.gene81304:CDS |
| AGAGTTCTTAAATACAAGAT+TGG | 0.418020 | 5.2:-80691414 | None:intergenic |
| TTGGCTGCTTGCATGCATAA+TGG | 0.422100 | 5.2:+80691632 | MS.gene81304:CDS |
| CAAAACAAGGCCTTGGATGA+AGG | 0.427193 | 5.2:-80691612 | None:intergenic |
| AATGAGACTTCAATTAGCTT+AGG | 0.435668 | 5.2:+80691560 | MS.gene81304:CDS |
| ATGCTGGATGGTTGCTCTGA+TGG | 0.442200 | 5.2:+80689996 | MS.gene81304:CDS |
| GGTGACCAACCCAGTAGATC+TGG | 0.445031 | 5.2:+80689813 | MS.gene81304:CDS |
| AACTCTAAGGTCCACAAAAT+GGG | 0.447471 | 5.2:+80691431 | MS.gene81304:CDS |
| CTATGTGCTTGTATCTGGAT+TGG | 0.464602 | 5.2:+80691180 | MS.gene81304:CDS |
| ATGACAAACTTGTCAGGGTA+TGG | 0.475765 | 5.2:+80691807 | MS.gene81304:CDS |
| GCTTAGGTGGAGGAGTTTGG+AGG | 0.486854 | 5.2:+80691576 | MS.gene81304:CDS |
| ACCTTCTTGTAGTGTGTAAG+TGG | 0.489791 | 5.2:-80689793 | None:intergenic |
| AAGCACGATTCCCTTGCATA+TGG | 0.490141 | 5.2:+80691710 | MS.gene81304:CDS |
| CTTAGGTGGAGGAGTTTGGA+GGG | 0.500724 | 5.2:+80691577 | MS.gene81304:CDS |
| AAGCAGCCAAAACAAGGCCT+TGG | 0.510827 | 5.2:-80691619 | None:intergenic |
| TTCACTCTTTAATATTGAAG+CGG | 0.521384 | 5.2:+80689842 | MS.gene81304:CDS |
| TATATACCAAATTTGGCTGA+TGG | 0.522943 | 5.2:-80691340 | None:intergenic |
| AAAACAAGGCCTTGGATGAA+GGG | 0.528136 | 5.2:-80691611 | None:intergenic |
| AGGCGACAAAGCTGAAGTGT+TGG | 0.538419 | 5.2:+80691676 | MS.gene81304:CDS |
| AAAGAGCAAGTAGCAACTAC+TGG | 0.540443 | 5.2:-80691782 | None:intergenic |
| GCCAGTCTGCTCCATATGCA+AGG | 0.541177 | 5.2:-80691721 | None:intergenic |
| ATAAAGTGGAATCCACCTGC+AGG | 0.543383 | 5.2:+80689918 | MS.gene81304:CDS |
| GAGACTTCAATTAGCTTAGG+TGG | 0.547687 | 5.2:+80691563 | MS.gene81304:CDS |
| TTTAATATTGAAGCGGACAC+AGG | 0.552003 | 5.2:+80689849 | MS.gene81304:CDS |
| TCATCCACATCCATCACAGT+AGG | 0.553375 | 5.2:+80691209 | MS.gene81304:CDS |
| AAAGGACTTATGTTCCCTGC+AGG | 0.554338 | 5.2:-80689933 | None:intergenic |
| GGACTTATGTTCCCTGCAGG+TGG | 0.557853 | 5.2:-80689930 | None:intergenic |
| TTCTTAAATACAAGATTGGA+AGG | 0.558501 | 5.2:-80691410 | None:intergenic |
| TTAGGTCAAGCAGATGCTGA+TGG | 0.559666 | 5.2:+80689957 | MS.gene81304:CDS |
| GGTTGCTCTGATGGAATACA+AGG | 0.562141 | 5.2:+80690005 | MS.gene81304:CDS |
| ATGATGAATACTTGAGGGTG+TGG | 0.565089 | 5.2:+80691510 | MS.gene81304:CDS |
| ATCAGAAAGCCCTACTGTGA+TGG | 0.567016 | 5.2:-80691219 | None:intergenic |
| TACAAGATAATATCATTACA+TGG | 0.572100 | 5.2:-80691833 | None:intergenic |
| ATACTTGAGAATTAAGATGC+TGG | 0.572344 | 5.2:+80689980 | MS.gene81304:CDS |
| TATGGAGCAGACTGGCAGAA+AGG | 0.573876 | 5.2:+80691728 | MS.gene81304:CDS |
| ACATTGTGGTGCCCATTATG+TGG | 0.577351 | 5.2:-80689759 | None:intergenic |
| ATCTGGAAATACAAGAAGAG+TGG | 0.579291 | 5.2:+80691276 | MS.gene81304:CDS |
| TTTCTATGACAAACTTGTCA+GGG | 0.580064 | 5.2:+80691802 | MS.gene81304:CDS |
| TGCTTCCAGATCTACTGGGT+TGG | 0.580660 | 5.2:-80689818 | None:intergenic |
| GCATGCAAGCAGCCAAAACA+AGG | 0.587727 | 5.2:-80691625 | None:intergenic |
| TTTATAGTGAGGAGACTAGT+GGG | 0.588794 | 5.2:+80689886 | MS.gene81304:CDS |
| AATAAGGTATTTGGGTCATG+AGG | 0.593807 | 5.2:-80691476 | None:intergenic |
| ACTTCAATTAGCTTAGGTGG+AGG | 0.594290 | 5.2:+80691566 | MS.gene81304:CDS |
| AAGCTATGATGAATACTTGA+GGG | 0.595787 | 5.2:+80691505 | MS.gene81304:CDS |
| AAGCCCTACTGTGATGGATG+TGG | 0.596404 | 5.2:-80691213 | None:intergenic |
| TGGCTGATGGATATCAAATG+AGG | 0.602475 | 5.2:-80691327 | None:intergenic |
| AAGCATCATCCCTTCATCCA+AGG | 0.604040 | 5.2:+80691602 | MS.gene81304:CDS |
| GGAAATACAAGAAGAGTGGA+AGG | 0.610010 | 5.2:+80691280 | MS.gene81304:CDS |
| TCCACTTACACACTACAAGA+AGG | 0.610467 | 5.2:+80689792 | MS.gene81304:CDS |
| GAGAAGTAAATCACATGGGA+GGG | 0.611106 | 5.2:+80691750 | MS.gene81304:CDS |
| GAAGCTATGATGAATACTTG+AGG | 0.614708 | 5.2:+80691504 | MS.gene81304:CDS |
| CCAGTCTGCTCCATATGCAA+GGG | 0.615600 | 5.2:-80691720 | None:intergenic |
| CATCCACATCCATCACAGTA+GGG | 0.616744 | 5.2:+80691210 | MS.gene81304:CDS |
| AGAAGGTAATGCAGATGCTG+TGG | 0.618373 | 5.2:+80689728 | MS.gene81304:CDS |
| ACTGTGATGGATGTGGATGA+AGG | 0.619011 | 5.2:-80691206 | None:intergenic |
| CCCTTGCATATGGAGCAGAC+TGG | 0.623412 | 5.2:+80691720 | MS.gene81304:CDS |
| GGAGAAGTAAATCACATGGG+AGG | 0.623635 | 5.2:+80691749 | MS.gene81304:CDS |
| ACAAACTTGTCAGGGTATGG+AGG | 0.625101 | 5.2:+80691810 | MS.gene81304:CDS |
| ATCACAGTAGGGCTTTCTGA+TGG | 0.627183 | 5.2:+80691221 | MS.gene81304:CDS |
| ACAACAAAACTTGCAATCGT+CGG | 0.634703 | 5.2:-80691369 | None:intergenic |
| GTTTATAGTGAGGAGACTAG+TGG | 0.636171 | 5.2:+80689885 | MS.gene81304:CDS |
| TTGAGAATTAAGATGCTGGA+TGG | 0.643048 | 5.2:+80689984 | MS.gene81304:CDS |
| TGATGAATACTTGAGGGTGT+GGG | 0.648470 | 5.2:+80691511 | MS.gene81304:CDS |
| TGGATACAGCTAAAACATTG+TGG | 0.659617 | 5.2:-80689773 | None:intergenic |
| TAAAGTGGAATCCACCTGCA+GGG | 0.661286 | 5.2:+80689919 | MS.gene81304:CDS |
| GCTTGACACAGTTTATAGTG+AGG | 0.668101 | 5.2:+80689875 | MS.gene81304:CDS |
| GAAAGGAGAAGTAAATCACA+TGG | 0.686537 | 5.2:+80691745 | MS.gene81304:CDS |
| GAAATGCTTCCAGATCTACT+GGG | 0.705745 | 5.2:-80689822 | None:intergenic |
| AAAGGAGAAGTAAATCACAT+GGG | 0.735171 | 5.2:+80691746 | MS.gene81304:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTGATACAATTAAAAATAAT+AGG | - | chr5.2:80690838-80690857 | None:intergenic | 10.0% |
| !! | AAGTCTAGAAATAAATTATA+CGG | + | chr5.2:80690107-80690126 | MS.gene81304:intron | 15.0% |
| !! | AATAAAAAACAAACTAGAAA+TGG | - | chr5.2:80690636-80690655 | None:intergenic | 15.0% |
| !!! | TTCTAGTTTGTTTTTTATTT+TGG | + | chr5.2:80690637-80690656 | MS.gene81304:intron | 15.0% |
| !!! | TTTTAATTGTATCAAAGATT+TGG | + | chr5.2:80690843-80690862 | MS.gene81304:intron | 15.0% |
| !! | AAACTCAATTATATAAGAGA+TGG | - | chr5.2:80690771-80690790 | None:intergenic | 20.0% |
| !! | AAGGTAGTTATAAATTTCAT+AGG | - | chr5.2:80690801-80690820 | None:intergenic | 20.0% |
| !! | AATTATATAAGAGATGGTAA+AGG | - | chr5.2:80690765-80690784 | None:intergenic | 20.0% |
| !! | ACTATAGCATTATAATAAAG+CGG | + | chr5.2:80690249-80690268 | MS.gene81304:intron | 20.0% |
| !! | AGGTAGTTATAAATTTCATA+GGG | - | chr5.2:80690800-80690819 | None:intergenic | 20.0% |
| !! | CTAAATTGTTATGAATTTGA+TGG | + | chr5.2:80691112-80691131 | MS.gene81304:intron | 20.0% |
| !! | GTTAAAAATATGTAAAAGTG+AGG | - | chr5.2:80690423-80690442 | None:intergenic | 20.0% |
| !! | TACAAGATAATATCATTACA+TGG | - | chr5.2:80691836-80691855 | None:intergenic | 20.0% |
| !! | TTTAGAAATGAAAGAATCAA+GGG | - | chr5.2:80690044-80690063 | None:intergenic | 20.0% |
| !!! | TTCTAAAACACTATTTTCAT+TGG | + | chr5.2:80690057-80690076 | MS.gene81304:intron | 20.0% |
| !!! | TTTTAGAAATGAAAGAATCA+AGG | - | chr5.2:80690045-80690064 | None:intergenic | 20.0% |
| ! | AAATATAGTATAGCTCTTCT+AGG | + | chr5.2:80690709-80690728 | MS.gene81304:intron | 25.0% |
| ! | AAATATGTAAAAGTGAGGTT+TGG | - | chr5.2:80690418-80690437 | None:intergenic | 25.0% |
| ! | AAGATTAACTGTAATGTAGA+AGG | - | chr5.2:80690976-80690995 | None:intergenic | 25.0% |
| ! | AATAAAATGTAACTCAGCAA+AGG | - | chr5.2:80691088-80691107 | None:intergenic | 25.0% |
| ! | AATATAGTATAGCTCTTCTA+GGG | + | chr5.2:80690710-80690729 | MS.gene81304:intron | 25.0% |
| ! | AGAGTTCTTAAATACAAGAT+TGG | - | chr5.2:80691417-80691436 | None:intergenic | 25.0% |
| ! | ATATATATCTTATAGCTAGC+TGG | + | chr5.2:80690884-80690903 | MS.gene81304:intron | 25.0% |
| ! | GGTAGTTATAAATTTCATAG+GGG | - | chr5.2:80690799-80690818 | None:intergenic | 25.0% |
| ! | GTAGTTATAAATTTCATAGG+GGG | - | chr5.2:80690798-80690817 | None:intergenic | 25.0% |
| ! | TACAAAGAAACATTAATACG+TGG | - | chr5.2:80691012-80691031 | None:intergenic | 25.0% |
| ! | TCTTGTATTTAAGAACTCTA+AGG | + | chr5.2:80691418-80691437 | MS.gene81304:CDS | 25.0% |
| ! | TTCACTCTTTAATATTGAAG+CGG | + | chr5.2:80689842-80689861 | MS.gene81304:CDS | 25.0% |
| ! | TTCTTAAATACAAGATTGGA+AGG | - | chr5.2:80691413-80691432 | None:intergenic | 25.0% |
| !! | ACTATTGAATTTACGTCTTT+TGG | - | chr5.2:80690363-80690382 | None:intergenic | 25.0% |
| !! | ATAACTACCTTCTAATTTGT+TGG | + | chr5.2:80690810-80690829 | MS.gene81304:intron | 25.0% |
| !! | TAGAAGGTTGTATTTTGTAA+TGG | - | chr5.2:80690960-80690979 | None:intergenic | 25.0% |
| !! | TTCCAGTTAATAAGGTATTT+GGG | - | chr5.2:80691487-80691506 | None:intergenic | 25.0% |
| !! | TTTGCAATTGTTGCTATTAA+AGG | + | chr5.2:80691656-80691675 | MS.gene81304:CDS | 25.0% |
| AAAGGAGAAGTAAATCACAT+GGG | + | chr5.2:80691746-80691765 | MS.gene81304:CDS | 30.0% | |
| AAGAAACATTAATACGTGGA+AGG | - | chr5.2:80691008-80691027 | None:intergenic | 30.0% | |
| AAGCTATGATGAATACTTGA+GGG | + | chr5.2:80691505-80691524 | MS.gene81304:CDS | 30.0% | |
| ATACTTGAGAATTAAGATGC+TGG | + | chr5.2:80689980-80689999 | MS.gene81304:CDS | 30.0% | |
| ATCATAGCTTCCAGTTAATA+AGG | - | chr5.2:80691495-80691514 | None:intergenic | 30.0% | |
| CTAATTGAAGTCTCATTAAC+AGG | - | chr5.2:80691557-80691576 | None:intergenic | 30.0% | |
| TATATACCAAATTTGGCTGA+TGG | - | chr5.2:80691343-80691362 | None:intergenic | 30.0% | |
| TCATATATCAGTGTCATGAT+GGG | - | chr5.2:80690459-80690478 | None:intergenic | 30.0% | |
| TTCCACTGCAAATTTATCAA+GGG | - | chr5.2:80690326-80690345 | None:intergenic | 30.0% | |
| TTTCCACTGCAAATTTATCA+AGG | - | chr5.2:80690327-80690346 | None:intergenic | 30.0% | |
| TTTCTATGACAAACTTGTCA+GGG | + | chr5.2:80691802-80691821 | MS.gene81304:CDS | 30.0% | |
| ! | AATGAGACTTCAATTAGCTT+AGG | + | chr5.2:80691560-80691579 | MS.gene81304:CDS | 30.0% |
| ! | AGGAATGCAATATTTTTCCA+TGG | - | chr5.2:80691068-80691087 | None:intergenic | 30.0% |
| ! | ATTGTTATGAATTTGATGGC+AGG | + | chr5.2:80691116-80691135 | MS.gene81304:intron | 30.0% |
| ! | CTTCCAGTTAATAAGGTATT+TGG | - | chr5.2:80691488-80691507 | None:intergenic | 30.0% |
| ! | TTGTTATGAATTTGATGGCA+GGG | + | chr5.2:80691117-80691136 | MS.gene81304:intron | 30.0% |
| !!! | TTTTTTTTTCCCCGATTTCT+TGG | + | chr5.2:80690511-80690530 | MS.gene81304:intron | 30.0% |
| AATTATACGGTACTTACCCT+CGG | + | chr5.2:80690120-80690139 | MS.gene81304:intron | 35.0% | |
| ACAACAAAACTTGCAATCGT+CGG | - | chr5.2:80691372-80691391 | None:intergenic | 35.0% | |
| ATAGGCACCAACAAATTAGA+AGG | - | chr5.2:80690820-80690839 | None:intergenic | 35.0% | |
| ATCTGGAAATACAAGAAGAG+TGG | + | chr5.2:80691276-80691295 | MS.gene81304:CDS | 35.0% | |
| ATGGCAAGAATGAATAACAG+AGG | + | chr5.2:80690563-80690582 | MS.gene81304:intron | 35.0% | |
| CAGCCAAATTTGGTATATAC+TGG | + | chr5.2:80691344-80691363 | MS.gene81304:CDS | 35.0% | |
| CTCATATATCAGTGTCATGA+TGG | - | chr5.2:80690460-80690479 | None:intergenic | 35.0% | |
| CTCTTCTTGTATTTCCAGAT+TGG | - | chr5.2:80691276-80691295 | None:intergenic | 35.0% | |
| CTTTCTATGACAAACTTGTC+AGG | + | chr5.2:80691801-80691820 | MS.gene81304:CDS | 35.0% | |
| GAAAGGAGAAGTAAATCACA+TGG | + | chr5.2:80691745-80691764 | MS.gene81304:CDS | 35.0% | |
| GAAGCTATGATGAATACTTG+AGG | + | chr5.2:80691504-80691523 | MS.gene81304:CDS | 35.0% | |
| GAATAACAGAGGAGTTTGAT+TGG | + | chr5.2:80690574-80690593 | MS.gene81304:intron | 35.0% | |
| GACCCAAATACCTTATTAAC+TGG | + | chr5.2:80691482-80691501 | MS.gene81304:CDS | 35.0% | |
| GAGCCAGTATATACCAAATT+TGG | - | chr5.2:80691350-80691369 | None:intergenic | 35.0% | |
| TAACTCTATGTGCTTGTATC+TGG | + | chr5.2:80691175-80691194 | MS.gene81304:CDS | 35.0% | |
| TACCCTTGATAAATTTGCAG+TGG | + | chr5.2:80690321-80690340 | MS.gene81304:intron | 35.0% | |
| TGATATCCATCAGCCAAATT+TGG | + | chr5.2:80691334-80691353 | MS.gene81304:CDS | 35.0% | |
| TGGATACAGCTAAAACATTG+TGG | - | chr5.2:80689776-80689795 | None:intergenic | 35.0% | |
| TTACAGATCGCAGAAAATAG+CGG | - | chr5.2:80690287-80690306 | None:intergenic | 35.0% | |
| TTCTCTTCATGAATCCAATC+TGG | + | chr5.2:80691259-80691278 | MS.gene81304:CDS | 35.0% | |
| TTGAGAATTAAGATGCTGGA+TGG | + | chr5.2:80689984-80690003 | MS.gene81304:CDS | 35.0% | |
| TTTAATATTGAAGCGGACAC+AGG | + | chr5.2:80689849-80689868 | MS.gene81304:CDS | 35.0% | |
| TTTATAGTGAGGAGACTAGT+GGG | + | chr5.2:80689886-80689905 | MS.gene81304:CDS | 35.0% | |
| ! | AATAAGGTATTTGGGTCATG+AGG | - | chr5.2:80691479-80691498 | None:intergenic | 35.0% |
| ! | AGGCACATGATTTTGAACTT+TGG | + | chr5.2:80691300-80691319 | MS.gene81304:CDS | 35.0% |
| ! | ATGGTTCAGTATGTGTTTTG+CGG | - | chr5.2:80690617-80690636 | None:intergenic | 35.0% |
| ! | ATTTTCCTTCCAAGAAATCG+GGG | - | chr5.2:80690523-80690542 | None:intergenic | 35.0% |
| ! | CATTTTCCTTCCAAGAAATC+GGG | - | chr5.2:80690524-80690543 | None:intergenic | 35.0% |
| ! | GCATTTTCCTTCCAAGAAAT+CGG | - | chr5.2:80690525-80690544 | None:intergenic | 35.0% |
| ! | GTGGGATTTTCGATATAAAG+TGG | + | chr5.2:80689904-80689923 | MS.gene81304:CDS | 35.0% |
| ! | TGCAATATTTTTCCATGGCA+AGG | - | chr5.2:80691063-80691082 | None:intergenic | 35.0% |
| ! | TGTTATGAATTTGATGGCAG+GGG | + | chr5.2:80691118-80691137 | MS.gene81304:intron | 35.0% |
| ! | TTGTTGATTAGCAGCTATTG+TGG | + | chr5.2:80690225-80690244 | MS.gene81304:intron | 35.0% |
| ! | TTTGGTTTCTCTACATGCAA+AGG | + | chr5.2:80690861-80690880 | MS.gene81304:intron | 35.0% |
| !! | AACTCTAAGGTCCACAAAAT+GGG | + | chr5.2:80691431-80691450 | MS.gene81304:CDS | 35.0% |
| !! | GTAGCACATTGCTATTTAGA+AGG | + | chr5.2:80689711-80689730 | MS.gene81304:CDS | 35.0% |
| !! | TGGAGTTTTGTCCACATAAT+GGG | + | chr5.2:80689748-80689767 | MS.gene81304:CDS | 35.0% |
| !!! | ACGATTGCAAGTTTTGTTGT+TGG | + | chr5.2:80691372-80691391 | MS.gene81304:CDS | 35.0% |
| !!! | AGTTTTGTTGTTGGGATTTG+CGG | + | chr5.2:80691381-80691400 | MS.gene81304:CDS | 35.0% |
| !!! | CGATTGCAAGTTTTGTTGTT+GGG | + | chr5.2:80691373-80691392 | MS.gene81304:CDS | 35.0% |
| !!! | GGGAACATAAGTCCTTTTTT+AGG | + | chr5.2:80689939-80689958 | MS.gene81304:CDS | 35.0% |
| AAAACAAGGCCTTGGATGAA+GGG | - | chr5.2:80691614-80691633 | None:intergenic | 40.0% | |
| AAAGAGCAAGTAGCAACTAC+TGG | - | chr5.2:80691785-80691804 | None:intergenic | 40.0% | |
| ACCTTCTTGTAGTGTGTAAG+TGG | - | chr5.2:80689796-80689815 | None:intergenic | 40.0% | |
| ATGACAAACTTGTCAGGGTA+TGG | + | chr5.2:80691807-80691826 | MS.gene81304:CDS | 40.0% | |
| ATGATGAATACTTGAGGGTG+TGG | + | chr5.2:80691510-80691529 | MS.gene81304:CDS | 40.0% | |
| CCGTTATTTGACAAAACCGA+GGG | - | chr5.2:80690139-80690158 | None:intergenic | 40.0% | |
| CTATGTGCTTGTATCTGGAT+TGG | + | chr5.2:80691180-80691199 | MS.gene81304:CDS | 40.0% | |
| CTCTGATGGAATACAAGGTA+TGG | + | chr5.2:80690010-80690029 | MS.gene81304:intron | 40.0% | |
| CTGAACATTACGAACAGTGA+TGG | + | chr5.2:80690544-80690563 | MS.gene81304:intron | 40.0% | |
| GAAATGCTTCCAGATCTACT+GGG | - | chr5.2:80689825-80689844 | None:intergenic | 40.0% | |
| GAGAAGTAAATCACATGGGA+GGG | + | chr5.2:80691750-80691769 | MS.gene81304:CDS | 40.0% | |
| GATAAAAGCAGTGACATGTG+CGG | + | chr5.2:80691032-80691051 | MS.gene81304:intron | 40.0% | |
| GCATCTGCTTGACCTAAAAA+AGG | - | chr5.2:80689954-80689973 | None:intergenic | 40.0% | |
| GCTTGACACAGTTTATAGTG+AGG | + | chr5.2:80689875-80689894 | MS.gene81304:CDS | 40.0% | |
| GGAAATACAAGAAGAGTGGA+AGG | + | chr5.2:80691280-80691299 | MS.gene81304:CDS | 40.0% | |
| GTTTATAGTGAGGAGACTAG+TGG | + | chr5.2:80689885-80689904 | MS.gene81304:CDS | 40.0% | |
| TCCACTTACACACTACAAGA+AGG | + | chr5.2:80689792-80689811 | MS.gene81304:CDS | 40.0% | |
| TGAAATGCTTCCAGATCTAC+TGG | - | chr5.2:80689826-80689845 | None:intergenic | 40.0% | |
| TGTCTGCAAGAATGCATACA+TGG | - | chr5.2:80690670-80690689 | None:intergenic | 40.0% | |
| ! | ACTTCAATTAGCTTAGGTGG+AGG | + | chr5.2:80691566-80691585 | MS.gene81304:CDS | 40.0% |
| ! | GAGACTTCAATTAGCTTAGG+TGG | + | chr5.2:80691563-80691582 | MS.gene81304:CDS | 40.0% |
| ! | TGATGAATACTTGAGGGTGT+GGG | + | chr5.2:80691511-80691530 | MS.gene81304:CDS | 40.0% |
| ! | TGCAAGTAACACCCATTTTG+TGG | - | chr5.2:80691445-80691464 | None:intergenic | 40.0% |
| ! | TGGCTGATGGATATCAAATG+AGG | - | chr5.2:80691330-80691349 | None:intergenic | 40.0% |
| ! | TGGTTCAGTATGTGTTTTGC+GGG | - | chr5.2:80690616-80690635 | None:intergenic | 40.0% |
| ! | TTTTTCCCCGATTTCTTGGA+AGG | + | chr5.2:80690515-80690534 | MS.gene81304:intron | 40.0% |
| !! | CCCTCGGTTTTGTCAAATAA+CGG | + | chr5.2:80690136-80690155 | MS.gene81304:intron | 40.0% |
| !! | GAACTCTAAGGTCCACAAAA+TGG | + | chr5.2:80691430-80691449 | MS.gene81304:CDS | 40.0% |
| !! | GTGGAGTTTTGTCCACATAA+TGG | + | chr5.2:80689747-80689766 | MS.gene81304:CDS | 40.0% |
| !!! | GTTTTGTTGTTGGGATTTGC+GGG | + | chr5.2:80691382-80691401 | MS.gene81304:CDS | 40.0% |
| AAAGGACTTATGTTCCCTGC+AGG | - | chr5.2:80689936-80689955 | None:intergenic | 45.0% | |
| AAGCACGATTCCCTTGCATA+TGG | + | chr5.2:80691710-80691729 | MS.gene81304:CDS | 45.0% | |
| AAGCATCATCCCTTCATCCA+AGG | + | chr5.2:80691602-80691621 | MS.gene81304:CDS | 45.0% | |
| ACAAACTTGTCAGGGTATGG+AGG | + | chr5.2:80691810-80691829 | MS.gene81304:CDS | 45.0% | |
| ACATTGTGGTGCCCATTATG+TGG | - | chr5.2:80689762-80689781 | None:intergenic | 45.0% | |
| AGAAGGTAATGCAGATGCTG+TGG | + | chr5.2:80689728-80689747 | MS.gene81304:CDS | 45.0% | |
| AGCTAGCTGGATATGCACTT+GGG | + | chr5.2:80690897-80690916 | MS.gene81304:intron | 45.0% | |
| ATAAAGTGGAATCCACCTGC+AGG | + | chr5.2:80689918-80689937 | MS.gene81304:CDS | 45.0% | |
| ATAACGGCGCTATAGCATAG+CGG | + | chr5.2:80690152-80690171 | MS.gene81304:intron | 45.0% | |
| ATCACAGTAGGGCTTTCTGA+TGG | + | chr5.2:80691221-80691240 | MS.gene81304:CDS | 45.0% | |
| ATCAGAAAGCCCTACTGTGA+TGG | - | chr5.2:80691222-80691241 | None:intergenic | 45.0% | |
| CAAAACAAGGCCTTGGATGA+AGG | - | chr5.2:80691615-80691634 | None:intergenic | 45.0% | |
| CATCCACATCCATCACAGTA+GGG | + | chr5.2:80691210-80691229 | MS.gene81304:CDS | 45.0% | |
| GCCGTTATTTGACAAAACCG+AGG | - | chr5.2:80690140-80690159 | None:intergenic | 45.0% | |
| GGAGAAGTAAATCACATGGG+AGG | + | chr5.2:80691749-80691768 | MS.gene81304:CDS | 45.0% | |
| GGCATTTCCTACTCTCACAA+CGG | - | chr5.2:80690397-80690416 | None:intergenic | 45.0% | |
| GGTTGCTCTGATGGAATACA+AGG | + | chr5.2:80690005-80690024 | MS.gene81304:CDS | 45.0% | |
| TAAAGTGGAATCCACCTGCA+GGG | + | chr5.2:80689919-80689938 | MS.gene81304:CDS | 45.0% | |
| TAGCTAGCTGGATATGCACT+TGG | + | chr5.2:80690896-80690915 | MS.gene81304:intron | 45.0% | |
| TCATCCACATCCATCACAGT+AGG | + | chr5.2:80691209-80691228 | MS.gene81304:CDS | 45.0% | |
| TTAGCTTAGGTGGAGGAGTT+TGG | + | chr5.2:80691573-80691592 | MS.gene81304:CDS | 45.0% | |
| TTAGGTCAAGCAGATGCTGA+TGG | + | chr5.2:80689957-80689976 | MS.gene81304:CDS | 45.0% | |
| TTGGCTGCTTGCATGCATAA+TGG | + | chr5.2:80691632-80691651 | MS.gene81304:CDS | 45.0% | |
| ! | ATGTGTTTTGCGGGAATCAC+AGG | - | chr5.2:80690607-80690626 | None:intergenic | 45.0% |
| !! | ACTGTGATGGATGTGGATGA+AGG | - | chr5.2:80691209-80691228 | None:intergenic | 45.0% |
| !! | CAGTGTCATGATGGGTTTCT+AGG | - | chr5.2:80690451-80690470 | None:intergenic | 45.0% |
| !!! | CTTCATCCAAGGCCTTGTTT+TGG | + | chr5.2:80691613-80691632 | MS.gene81304:CDS | 45.0% |
| !!! | TTACGTCTTTTGGAGCTCTG+TGG | - | chr5.2:80690353-80690372 | None:intergenic | 45.0% |
| AACTGCTCCGTTGTGAGAGT+AGG | + | chr5.2:80690387-80690406 | MS.gene81304:intron | 50.0% | |
| AAGCAGCCAAAACAAGGCCT+TGG | - | chr5.2:80691622-80691641 | None:intergenic | 50.0% | |
| AGGCGACAAAGCTGAAGTGT+TGG | + | chr5.2:80691676-80691695 | MS.gene81304:CDS | 50.0% | |
| ATGCTGGATGGTTGCTCTGA+TGG | + | chr5.2:80689996-80690015 | MS.gene81304:CDS | 50.0% | |
| CCAGTCTGCTCCATATGCAA+GGG | - | chr5.2:80691723-80691742 | None:intergenic | 50.0% | |
| CTTAGGTGGAGGAGTTTGGA+GGG | + | chr5.2:80691577-80691596 | MS.gene81304:CDS | 50.0% | |
| GCATGCAAGCAGCCAAAACA+AGG | - | chr5.2:80691628-80691647 | None:intergenic | 50.0% | |
| TATGGAGCAGACTGGCAGAA+AGG | + | chr5.2:80691728-80691747 | MS.gene81304:CDS | 50.0% | |
| TGCTTCCAGATCTACTGGGT+TGG | - | chr5.2:80689821-80689840 | None:intergenic | 50.0% | |
| ! | ACTTGGGCACTTTTCTCAGG+AGG | + | chr5.2:80690913-80690932 | MS.gene81304:intron | 50.0% |
| ! | GGCACTTTTCTCAGGAGGAT+TGG | + | chr5.2:80690918-80690937 | MS.gene81304:intron | 50.0% |
| ! | TGCACTTGGGCACTTTTCTC+AGG | + | chr5.2:80690910-80690929 | MS.gene81304:intron | 50.0% |
| !! | AAGCCCTACTGTGATGGATG+TGG | - | chr5.2:80691216-80691235 | None:intergenic | 50.0% |
| CCCTTGCATATGGAGCAGAC+TGG | + | chr5.2:80691720-80691739 | MS.gene81304:CDS | 55.0% | |
| GCCAGTCTGCTCCATATGCA+AGG | - | chr5.2:80691724-80691743 | None:intergenic | 55.0% | |
| GCTTAGGTGGAGGAGTTTGG+AGG | + | chr5.2:80691576-80691595 | MS.gene81304:CDS | 55.0% | |
| GGACTTATGTTCCCTGCAGG+TGG | - | chr5.2:80689933-80689952 | None:intergenic | 55.0% | |
| GGTGACCAACCCAGTAGATC+TGG | + | chr5.2:80689813-80689832 | MS.gene81304:CDS | 55.0% | |
| TGTGCGGATGTGCCTTGCCA+TGG | + | chr5.2:80691048-80691067 | MS.gene81304:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 80689705 | 80691856 | 80689705 | ID=MS.gene81304 |
| chr5.2 | mRNA | 80689705 | 80691856 | 80689705 | ID=MS.gene81304.t1;Parent=MS.gene81304 |
| chr5.2 | exon | 80689705 | 80690026 | 80689705 | ID=MS.gene81304.t1.exon1;Parent=MS.gene81304.t1 |
| chr5.2 | CDS | 80689705 | 80690026 | 80689705 | ID=cds.MS.gene81304.t1;Parent=MS.gene81304.t1 |
| chr5.2 | exon | 80691138 | 80691856 | 80691138 | ID=MS.gene81304.t1.exon2;Parent=MS.gene81304.t1 |
| chr5.2 | CDS | 80691138 | 80691856 | 80691138 | ID=cds.MS.gene81304.t1;Parent=MS.gene81304.t1 |
| Gene Sequence |
| Protein sequence |
