Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81366.t1 | XP_024633687.1 | 57 | 93 | 39 | 1 | 160 | 252 | 5 | 96 | 6.80E-18 | 101.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81366.t1 | A0A2Z6NBL0 | 40.9 | 132 | 73 | 4 | 125 | 252 | 4 | 134 | 2.1e-13 | 85.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene81366 | 0.80665 | 7.42E-50 | -1.69E-46 |
| MS.gene052447 | MS.gene81366 | 0.839787 | 1.29E-57 | -1.69E-46 |
| MS.gene05329 | MS.gene81366 | 0.83833 | 3.07E-57 | -1.69E-46 |
| MS.gene05415 | MS.gene81366 | 0.823136 | 1.63E-53 | -1.69E-46 |
| MS.gene05531 | MS.gene81366 | 0.802446 | 5.59E-49 | -1.69E-46 |
| MS.gene056174 | MS.gene81366 | 0.807213 | 5.64E-50 | -1.69E-46 |
| MS.gene056272 | MS.gene81366 | 0.803385 | 3.57E-49 | -1.69E-46 |
| MS.gene059584 | MS.gene81366 | 0.805948 | 1.04E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81366.t1 | MTR_2g093430 | 43.011 | 93 | 46 | 2 | 166 | 252 | 85 | 176 | 1.70e-14 | 72.8 |
| MS.gene81366.t1 | MTR_2g083810 | 41.758 | 91 | 48 | 2 | 166 | 252 | 80 | 169 | 2.09e-13 | 66.6 |
| MS.gene81366.t1 | MTR_2g083810 | 41.758 | 91 | 48 | 2 | 166 | 252 | 80 | 169 | 3.20e-13 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 68 sgRNAs with CRISPR-Local
Find 119 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGCATCTCCTCTTTCTGTT+TGG | 0.302661 | 5.2:-80074162 | None:intergenic |
| TGCTCCCTCGTCCCGCGGTT+TGG | 0.334385 | 5.2:+80073672 | MS.gene81366:CDS |
| TATTGCCAAAGTGGCAGATT+TGG | 0.339409 | 5.2:-80074573 | None:intergenic |
| AAACCGCGGGACGAGGGAGC+AGG | 0.344500 | 5.2:-80073670 | None:intergenic |
| GCTGTTTGGGAACTAGTTAA+TGG | 0.356582 | 5.2:+80074650 | MS.gene81366:CDS |
| CAAGATTGAGATGGCTGTTT+GGG | 0.360205 | 5.2:+80074637 | MS.gene81366:CDS |
| ACAAGGGAGATCCTTAAAAT+AGG | 0.388384 | 5.2:-80074199 | None:intergenic |
| CCACAGTGTTTACTAATAGA+TGG | 0.393695 | 5.2:+80074738 | MS.gene81366:CDS |
| CCAAAGTGGCAGATTTGGTT+AGG | 0.395318 | 5.2:-80074568 | None:intergenic |
| TCCTAGCTAGAAAGGTGATA+TGG | 0.410532 | 5.2:-80074682 | None:intergenic |
| CCATGCAACAATTCAAACTT+TGG | 0.422835 | 5.2:+80073116 | MS.gene81366:CDS |
| GTAAGTCCGCAATAATGTTC+AGG | 0.429739 | 5.2:-80074503 | None:intergenic |
| TCTCCTCTTTCTGTTTGGAC+TGG | 0.435108 | 5.2:-80074157 | None:intergenic |
| TATTTAACCTAAGTTACAAT+TGG | 0.436554 | 5.2:+80073948 | MS.gene81366:intron |
| TCAAGATTGAGATGGCTGTT+TGG | 0.443129 | 5.2:+80074636 | MS.gene81366:CDS |
| CCTAACCAAATCTGCCACTT+TGG | 0.457674 | 5.2:+80074568 | MS.gene81366:CDS |
| GAATCAAAAGTAGCGATGTT+TGG | 0.459781 | 5.2:+80074783 | MS.gene81366:CDS |
| CCATCTCAATCTTGACAAAT+CGG | 0.460947 | 5.2:-80074628 | None:intergenic |
| TCCTTAAAATAGGTCACGTT+GGG | 0.461926 | 5.2:-80074189 | None:intergenic |
| AACCGCGGGACGAGGGAGCA+GGG | 0.462730 | 5.2:-80073669 | None:intergenic |
| AGATGGGAAAGAGGCTTACA+AGG | 0.476043 | 5.2:-80074216 | None:intergenic |
| ATTGCGGACTTACACCTGTT+CGG | 0.478097 | 5.2:+80074513 | MS.gene81366:CDS |
| AGGAACCAAACCGCGGGACG+AGG | 0.483499 | 5.2:-80073677 | None:intergenic |
| TGTCGTCTTGATTTGCTCAA+AGG | 0.484522 | 5.2:+80073699 | MS.gene81366:CDS |
| AGGATCGTCGATCAAACGTT+TGG | 0.485490 | 5.2:-80074480 | None:intergenic |
| ACCGCGGGACGAGGGAGCAG+GGG | 0.487550 | 5.2:-80073668 | None:intergenic |
| ATAGATGGATGAGGAAGGTT+CGG | 0.487733 | 5.2:+80074753 | MS.gene81366:CDS |
| TCAAGATTCCCTCTTCTAGC+AGG | 0.492324 | 5.2:-80074309 | None:intergenic |
| ACCATATCACCTTTCTAGCT+AGG | 0.492797 | 5.2:+80074681 | MS.gene81366:CDS |
| TTTCTCCTCCTCGGAAAGAT+GGG | 0.496979 | 5.2:-80074232 | None:intergenic |
| CCGCGGGACGAGGGAGCAGG+GGG | 0.500069 | 5.2:-80073667 | None:intergenic |
| CTAGAAAGGTGATATGGTAA+AGG | 0.506004 | 5.2:-80074676 | None:intergenic |
| ATACCAGTCCAAACAGAAAG+AGG | 0.508910 | 5.2:+80074154 | MS.gene81366:CDS |
| CCAAAGTTTGAATTGTTGCA+TGG | 0.519517 | 5.2:-80073116 | None:intergenic |
| GTGAACATGGTTGGTTGACA+TGG | 0.521461 | 5.2:-80073078 | None:intergenic |
| GAAATTCGCTATTGCCAAAG+TGG | 0.531967 | 5.2:-80074582 | None:intergenic |
| TTTGGTTAGGTTGCGAAACA+TGG | 0.536494 | 5.2:-80074555 | None:intergenic |
| AGCAGCATTCCTAGCTAGAA+AGG | 0.537666 | 5.2:-80074690 | None:intergenic |
| CATTGAAGACCGAGTGAACA+TGG | 0.539499 | 5.2:-80073091 | None:intergenic |
| TCCTCGGAAAGATGGGAAAG+AGG | 0.544768 | 5.2:-80074225 | None:intergenic |
| GGAACCAAACCGCGGGACGA+GGG | 0.550865 | 5.2:-80073676 | None:intergenic |
| GCCTCTTTCCCATCTTTCCG+AGG | 0.552339 | 5.2:+80074224 | MS.gene81366:CDS |
| GACGACAGGAACCAAACCGC+GGG | 0.565215 | 5.2:-80073683 | None:intergenic |
| ATGAGGAAGGTTCGGAAAGT+CGG | 0.565265 | 5.2:+80074761 | MS.gene81366:CDS |
| GTTAGGTTGCGAAACATGGA+AGG | 0.572622 | 5.2:-80074551 | None:intergenic |
| GCTGCTGCTGATACTCTCGC+TGG | 0.578393 | 5.2:+80074021 | MS.gene81366:CDS |
| ATCCTTAAAATAGGTCACGT+TGG | 0.584622 | 5.2:-80074190 | None:intergenic |
| GTCAACCAACCATGTTCACT+CGG | 0.592026 | 5.2:+80073082 | MS.gene81366:CDS |
| GAGTTGCCGCCTGCTAGAAG+AGG | 0.597451 | 5.2:+80074300 | MS.gene81366:CDS |
| TTTGAGCAAATCAAGACGAC+AGG | 0.597728 | 5.2:-80073697 | None:intergenic |
| CGTACATCTATTGCATGTAG+AGG | 0.602395 | 5.2:-80074336 | None:intergenic |
| CCGATTTGTCAAGATTGAGA+TGG | 0.607654 | 5.2:+80074628 | MS.gene81366:CDS |
| TCTTTCCCATCTTTCCGAGG+AGG | 0.614625 | 5.2:+80074227 | MS.gene81366:CDS |
| AGTTGCCGCCTGCTAGAAGA+GGG | 0.618271 | 5.2:+80074301 | MS.gene81366:CDS |
| AGATTCCCTCTTCTAGCAGG+CGG | 0.619170 | 5.2:-80074306 | None:intergenic |
| TGTTTACTAATAGATGGATG+AGG | 0.629998 | 5.2:+80074744 | MS.gene81366:CDS |
| TACTAATAGATGGATGAGGA+AGG | 0.630665 | 5.2:+80074748 | MS.gene81366:CDS |
| ACATCTATTGCATGTAGAGG+AGG | 0.639058 | 5.2:-80074333 | None:intergenic |
| GGAGGAGAAAACTTACATTG+AGG | 0.640254 | 5.2:+80074245 | MS.gene81366:CDS |
| GATGGGAAAGAGGCTTACAA+GGG | 0.645216 | 5.2:-80074215 | None:intergenic |
| GAAGACCGAGTGAACATGGT+TGG | 0.652794 | 5.2:-80073087 | None:intergenic |
| GCAGAAGACGAAGGATCATG+TGG | 0.655398 | 5.2:-80074000 | None:intergenic |
| TCAGCAGCAGCAGAAGACGA+AGG | 0.668748 | 5.2:-80074009 | None:intergenic |
| TGAACATGGTTGGTTGACAT+GGG | 0.672219 | 5.2:-80073077 | None:intergenic |
| AGTCCGCAATAATGTTCAGG+AGG | 0.674937 | 5.2:-80074500 | None:intergenic |
| GATCCTCCTGAACATTATTG+CGG | 0.679290 | 5.2:+80074497 | MS.gene81366:CDS |
| AGACGACAGGAACCAAACCG+CGG | 0.686633 | 5.2:-80073684 | None:intergenic |
| CCATCTATTAGTAAACACTG+TGG | 0.792095 | 5.2:-80074738 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTATATATAATAATATTA+TGG | - | chr5.2:80074073-80074092 | None:intergenic | 0.0% |
| !! | ATGCTAAATATACAAATTAA+AGG | - | chr5.2:80073185-80073204 | None:intergenic | 15.0% |
| !! | TACAAAATTTAGTAATCAAA+TGG | + | chr5.2:80073156-80073175 | MS.gene81366:intron | 15.0% |
| !!! | ACTAAATTTTGTATAGAATT+AGG | - | chr5.2:80073149-80073168 | None:intergenic | 15.0% |
| !!! | ATTTTCTTTATTATTCATCA+GGG | + | chr5.2:80073418-80073437 | MS.gene81366:intron | 15.0% |
| !! | AAACCAAAAAAGAAGAAAAA+AGG | - | chr5.2:80074435-80074454 | None:intergenic | 20.0% |
| !! | GAACATATGTTAAATGAATA+AGG | - | chr5.2:80074051-80074070 | None:intergenic | 20.0% |
| !! | GAGATATATTGTTAAACTTA+AGG | + | chr5.2:80073375-80073394 | MS.gene81366:intron | 20.0% |
| !! | TATTTAACCTAAGTTACAAT+TGG | + | chr5.2:80073948-80073967 | MS.gene81366:intron | 20.0% |
| !! | TCTAATTTCTTTCTATCAAT+AGG | + | chr5.2:80073867-80073886 | MS.gene81366:intron | 20.0% |
| !!! | AAACCTTTTTTCTTCTTTTT+TGG | + | chr5.2:80074429-80074448 | MS.gene81366:intron | 20.0% |
| !!! | AATTTTAAATACAACCTCAA+GGG | + | chr5.2:80073535-80073554 | MS.gene81366:intron | 20.0% |
| !!! | GATTTTCTTTATTATTCATC+AGG | + | chr5.2:80073417-80073436 | MS.gene81366:intron | 20.0% |
| !!! | TTTTTTCTTCTTTTTTGGTT+TGG | + | chr5.2:80074434-80074453 | MS.gene81366:intron | 20.0% |
| ! | ACAATATTTAGTGTGATTGA+AGG | - | chr5.2:80073833-80073852 | None:intergenic | 25.0% |
| ! | TCAAAAATTGTGTCTCATTT+GGG | - | chr5.2:80073461-80073480 | None:intergenic | 25.0% |
| !! | CAATTTTAAATACAACCTCA+AGG | + | chr5.2:80073534-80073553 | MS.gene81366:intron | 25.0% |
| AAAAGGAAAAAGTTAGTCGA+GGG | - | chr5.2:80074379-80074398 | None:intergenic | 30.0% | |
| AAACAAAAAAAAACGCGATG+AGG | - | chr5.2:80073612-80073631 | None:intergenic | 30.0% | |
| ACCTGTTCGGAATTTAAAAA+AGG | + | chr5.2:80074526-80074545 | MS.gene81366:CDS | 30.0% | |
| AGAAGAACCAATTGTAACTT+AGG | - | chr5.2:80073958-80073977 | None:intergenic | 30.0% | |
| CTCAAAAATTGTGTCTCATT+TGG | - | chr5.2:80073462-80073481 | None:intergenic | 30.0% | |
| TAAAAGGAAAAAGTTAGTCG+AGG | - | chr5.2:80074380-80074399 | None:intergenic | 30.0% | |
| TCAAGGGTAAAATGGTAAAA+TGG | + | chr5.2:80073551-80073570 | MS.gene81366:intron | 30.0% | |
| TGTTTACTAATAGATGGATG+AGG | + | chr5.2:80074744-80074763 | MS.gene81366:CDS | 30.0% | |
| TTACATGACAAGACTCAAAA+AGG | - | chr5.2:80073801-80073820 | None:intergenic | 30.0% | |
| TTGTATTTAAATAGTCCCGT+TGG | - | chr5.2:80073589-80073608 | None:intergenic | 30.0% | |
| ! | ATTTTACCATTTTACCCTTG+AGG | - | chr5.2:80073552-80073571 | None:intergenic | 30.0% |
| !! | TGTTGTTTCATAAGATGATG+AGG | - | chr5.2:80073516-80073535 | None:intergenic | 30.0% |
| !!! | TCCTTTTTTAAATTCCGAAC+AGG | - | chr5.2:80074530-80074549 | None:intergenic | 30.0% |
| ACAAGGGAGATCCTTAAAAT+AGG | - | chr5.2:80074202-80074221 | None:intergenic | 35.0% | |
| ACAGGCAAGAGAATTATGAA+TGG | - | chr5.2:80073750-80073769 | None:intergenic | 35.0% | |
| AGATGATGAGGAAATGCATA+AGG | - | chr5.2:80073504-80073523 | None:intergenic | 35.0% | |
| ATACAACCTCAAGGGTAAAA+TGG | + | chr5.2:80073543-80073562 | MS.gene81366:intron | 35.0% | |
| ATCCTTAAAATAGGTCACGT+TGG | - | chr5.2:80074193-80074212 | None:intergenic | 35.0% | |
| CCAAAGTTTGAATTGTTGCA+TGG | - | chr5.2:80073119-80073138 | None:intergenic | 35.0% | |
| CCACAGTGTTTACTAATAGA+TGG | + | chr5.2:80074738-80074757 | MS.gene81366:CDS | 35.0% | |
| CCATCTATTAGTAAACACTG+TGG | - | chr5.2:80074741-80074760 | None:intergenic | 35.0% | |
| CCATCTCAATCTTGACAAAT+CGG | - | chr5.2:80074631-80074650 | None:intergenic | 35.0% | |
| CCATGCAACAATTCAAACTT+TGG | + | chr5.2:80073116-80073135 | MS.gene81366:CDS | 35.0% | |
| CTAGAAAGGTGATATGGTAA+AGG | - | chr5.2:80074679-80074698 | None:intergenic | 35.0% | |
| GAACGAACATCGATCATAAA+AGG | - | chr5.2:80074396-80074415 | None:intergenic | 35.0% | |
| GAATCAAAAGTAGCGATGTT+TGG | + | chr5.2:80074783-80074802 | MS.gene81366:CDS | 35.0% | |
| GATGATGAGGAAATGCATAA+GGG | - | chr5.2:80073503-80073522 | None:intergenic | 35.0% | |
| TACTAATAGATGGATGAGGA+AGG | + | chr5.2:80074748-80074767 | MS.gene81366:CDS | 35.0% | |
| TCCTTAAAATAGGTCACGTT+GGG | - | chr5.2:80074192-80074211 | None:intergenic | 35.0% | |
| ! | AATGTAAGTTTTCTCCTCCT+CGG | - | chr5.2:80074244-80074263 | None:intergenic | 35.0% |
| AAATAGTCCCGTTGGATCTA+GGG | - | chr5.2:80073581-80073600 | None:intergenic | 40.0% | |
| ACATCTATTGCATGTAGAGG+AGG | - | chr5.2:80074336-80074355 | None:intergenic | 40.0% | |
| ATACCAGTCCAAACAGAAAG+AGG | + | chr5.2:80074154-80074173 | MS.gene81366:CDS | 40.0% | |
| ATAGATGGATGAGGAAGGTT+CGG | + | chr5.2:80074753-80074772 | MS.gene81366:CDS | 40.0% | |
| CAAGATTGAGATGGCTGTTT+GGG | + | chr5.2:80074637-80074656 | MS.gene81366:CDS | 40.0% | |
| CGTACATCTATTGCATGTAG+AGG | - | chr5.2:80074339-80074358 | None:intergenic | 40.0% | |
| CTTGCCTGTTCTGTGAATTA+GGG | + | chr5.2:80073761-80073780 | MS.gene81366:intron | 40.0% | |
| GAAATTCGCTATTGCCAAAG+TGG | - | chr5.2:80074585-80074604 | None:intergenic | 40.0% | |
| GATCCTCCTGAACATTATTG+CGG | + | chr5.2:80074497-80074516 | MS.gene81366:CDS | 40.0% | |
| GCTGTTTGGGAACTAGTTAA+TGG | + | chr5.2:80074650-80074669 | MS.gene81366:CDS | 40.0% | |
| GGAGGAGAAAACTTACATTG+AGG | + | chr5.2:80074245-80074264 | MS.gene81366:CDS | 40.0% | |
| GTAAGTCCGCAATAATGTTC+AGG | - | chr5.2:80074506-80074525 | None:intergenic | 40.0% | |
| GTTCTGTGAATTAGGGCTTA+GGG | + | chr5.2:80073768-80073787 | MS.gene81366:intron | 40.0% | |
| TAAATAGTCCCGTTGGATCT+AGG | - | chr5.2:80073582-80073601 | None:intergenic | 40.0% | |
| TAAGCCCTAATTCACAGAAC+AGG | - | chr5.2:80073768-80073787 | None:intergenic | 40.0% | |
| TATTGCCAAAGTGGCAGATT+TGG | - | chr5.2:80074576-80074595 | None:intergenic | 40.0% | |
| TCAAGATTGAGATGGCTGTT+TGG | + | chr5.2:80074636-80074655 | MS.gene81366:CDS | 40.0% | |
| TCCTAGCTAGAAAGGTGATA+TGG | - | chr5.2:80074685-80074704 | None:intergenic | 40.0% | |
| TCTTGCCTGTTCTGTGAATT+AGG | + | chr5.2:80073760-80073779 | MS.gene81366:intron | 40.0% | |
| TGGCATCAAAAACCTGTTGA+GGG | - | chr5.2:80074463-80074482 | None:intergenic | 40.0% | |
| TGTTCTGTGAATTAGGGCTT+AGG | + | chr5.2:80073767-80073786 | MS.gene81366:intron | 40.0% | |
| TTGCATCTCCTCTTTCTGTT+TGG | - | chr5.2:80074165-80074184 | None:intergenic | 40.0% | |
| TTGGCATCAAAAACCTGTTG+AGG | - | chr5.2:80074464-80074483 | None:intergenic | 40.0% | |
| TTTGAGCAAATCAAGACGAC+AGG | - | chr5.2:80073700-80073719 | None:intergenic | 40.0% | |
| ! | CCGATTTGTCAAGATTGAGA+TGG | + | chr5.2:80074628-80074647 | MS.gene81366:CDS | 40.0% |
| ! | TTTGGTTAGGTTGCGAAACA+TGG | - | chr5.2:80074558-80074577 | None:intergenic | 40.0% |
| !! | ACCATATCACCTTTCTAGCT+AGG | + | chr5.2:80074681-80074700 | MS.gene81366:CDS | 40.0% |
| !! | TGTCGTCTTGATTTGCTCAA+AGG | + | chr5.2:80073699-80073718 | MS.gene81366:CDS | 40.0% |
| AGATGGGAAAGAGGCTTACA+AGG | - | chr5.2:80074219-80074238 | None:intergenic | 45.0% | |
| AGCAGCATTCCTAGCTAGAA+AGG | - | chr5.2:80074693-80074712 | None:intergenic | 45.0% | |
| AGGATCGTCGATCAAACGTT+TGG | - | chr5.2:80074483-80074502 | None:intergenic | 45.0% | |
| AGTCCGCAATAATGTTCAGG+AGG | - | chr5.2:80074503-80074522 | None:intergenic | 45.0% | |
| ATGAGGAAGGTTCGGAAAGT+CGG | + | chr5.2:80074761-80074780 | MS.gene81366:CDS | 45.0% | |
| ATGGCATACCCTAGATCCAA+CGG | + | chr5.2:80073570-80073589 | MS.gene81366:intron | 45.0% | |
| ATTGCGGACTTACACCTGTT+CGG | + | chr5.2:80074513-80074532 | MS.gene81366:CDS | 45.0% | |
| CATTGAAGACCGAGTGAACA+TGG | - | chr5.2:80073094-80073113 | None:intergenic | 45.0% | |
| GATGGGAAAGAGGCTTACAA+GGG | - | chr5.2:80074218-80074237 | None:intergenic | 45.0% | |
| GTCAACCAACCATGTTCACT+CGG | + | chr5.2:80073082-80073101 | MS.gene81366:CDS | 45.0% | |
| TCAAGATTCCCTCTTCTAGC+AGG | - | chr5.2:80074312-80074331 | None:intergenic | 45.0% | |
| TCTCCTCTTTCTGTTTGGAC+TGG | - | chr5.2:80074160-80074179 | None:intergenic | 45.0% | |
| TTTCTCCTCCTCGGAAAGAT+GGG | - | chr5.2:80074235-80074254 | None:intergenic | 45.0% | |
| ! | ATGTGGCATTTTGTGACGTC+TGG | - | chr5.2:80073986-80074005 | None:intergenic | 45.0% |
| ! | CCAAAGTGGCAGATTTGGTT+AGG | - | chr5.2:80074571-80074590 | None:intergenic | 45.0% |
| ! | CCTAACCAAATCTGCCACTT+TGG | + | chr5.2:80074568-80074587 | MS.gene81366:CDS | 45.0% |
| ! | GCCCAACGTGACCTATTTTA+AGG | + | chr5.2:80074188-80074207 | MS.gene81366:CDS | 45.0% |
| ! | GTTAGGTTGCGAAACATGGA+AGG | - | chr5.2:80074554-80074573 | None:intergenic | 45.0% |
| ! | TGTGGCATTTTGTGACGTCT+GGG | - | chr5.2:80073985-80074004 | None:intergenic | 45.0% |
| ! | TTTTCTCCTCCTCGGAAAGA+TGG | - | chr5.2:80074236-80074255 | None:intergenic | 45.0% |
| !! | TTGGTTTGGTAACCCTCAAC+AGG | + | chr5.2:80074448-80074467 | MS.gene81366:intron | 45.0% |
| AGATTCCCTCTTCTAGCAGG+CGG | - | chr5.2:80074309-80074328 | None:intergenic | 50.0% | |
| GAAGACCGAGTGAACATGGT+TGG | - | chr5.2:80073090-80073109 | None:intergenic | 50.0% | |
| GCAGAAGACGAAGGATCATG+TGG | - | chr5.2:80074003-80074022 | None:intergenic | 50.0% | |
| TCCTCGGAAAGATGGGAAAG+AGG | - | chr5.2:80074228-80074247 | None:intergenic | 50.0% | |
| TCTTTCCCATCTTTCCGAGG+AGG | + | chr5.2:80074227-80074246 | MS.gene81366:CDS | 50.0% | |
| TGGCATACCCTAGATCCAAC+GGG | + | chr5.2:80073571-80073590 | MS.gene81366:intron | 50.0% | |
| AGACGACAGGAACCAAACCG+CGG | - | chr5.2:80073687-80073706 | None:intergenic | 55.0% | |
| AGCAGGGGGATAGAGAACGA+GGG | - | chr5.2:80073656-80073675 | None:intergenic | 55.0% | |
| AGTTGCCGCCTGCTAGAAGA+GGG | + | chr5.2:80074301-80074320 | MS.gene81366:CDS | 55.0% | |
| GCCTCTTTCCCATCTTTCCG+AGG | + | chr5.2:80074224-80074243 | MS.gene81366:CDS | 55.0% | |
| TCAGCAGCAGCAGAAGACGA+AGG | - | chr5.2:80074012-80074031 | None:intergenic | 55.0% | |
| GACGACAGGAACCAAACCGC+GGG | - | chr5.2:80073686-80073705 | None:intergenic | 60.0% | |
| GAGCAGGGGGATAGAGAACG+AGG | - | chr5.2:80073657-80073676 | None:intergenic | 60.0% | |
| GAGTTGCCGCCTGCTAGAAG+AGG | + | chr5.2:80074300-80074319 | MS.gene81366:CDS | 60.0% | |
| GCTGCTGCTGATACTCTCGC+TGG | + | chr5.2:80074021-80074040 | MS.gene81366:CDS | 60.0% | |
| AGGAACCAAACCGCGGGACG+AGG | - | chr5.2:80073680-80073699 | None:intergenic | 65.0% | |
| GGAACCAAACCGCGGGACGA+GGG | - | chr5.2:80073679-80073698 | None:intergenic | 65.0% | |
| AAACCGCGGGACGAGGGAGC+AGG | - | chr5.2:80073673-80073692 | None:intergenic | 70.0% | |
| AACCGCGGGACGAGGGAGCA+GGG | - | chr5.2:80073672-80073691 | None:intergenic | 70.0% | |
| TGCTCCCTCGTCCCGCGGTT+TGG | + | chr5.2:80073672-80073691 | MS.gene81366:CDS | 70.0% | |
| ACCGCGGGACGAGGGAGCAG+GGG | - | chr5.2:80073671-80073690 | None:intergenic | 75.0% | |
| ! | CCCCCTGCTCCCTCGTCCCG+CGG | + | chr5.2:80073667-80073686 | MS.gene81366:CDS | 80.0% |
| ! | CCGCGGGACGAGGGAGCAGG+GGG | - | chr5.2:80073670-80073689 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 80073080 | 80074808 | 80073080 | ID=MS.gene81366 |
| chr5.2 | mRNA | 80073080 | 80074808 | 80073080 | ID=MS.gene81366.t1;Parent=MS.gene81366 |
| chr5.2 | exon | 80073080 | 80073137 | 80073080 | ID=MS.gene81366.t1.exon1;Parent=MS.gene81366.t1 |
| chr5.2 | CDS | 80073080 | 80073137 | 80073080 | ID=cds.MS.gene81366.t1;Parent=MS.gene81366.t1 |
| chr5.2 | exon | 80073641 | 80073720 | 80073641 | ID=MS.gene81366.t1.exon2;Parent=MS.gene81366.t1 |
| chr5.2 | CDS | 80073641 | 80073720 | 80073641 | ID=cds.MS.gene81366.t1;Parent=MS.gene81366.t1 |
| chr5.2 | exon | 80073961 | 80074042 | 80073961 | ID=MS.gene81366.t1.exon3;Parent=MS.gene81366.t1 |
| chr5.2 | CDS | 80073961 | 80074042 | 80073961 | ID=cds.MS.gene81366.t1;Parent=MS.gene81366.t1 |
| chr5.2 | exon | 80074154 | 80074353 | 80074154 | ID=MS.gene81366.t1.exon4;Parent=MS.gene81366.t1 |
| chr5.2 | CDS | 80074154 | 80074353 | 80074154 | ID=cds.MS.gene81366.t1;Parent=MS.gene81366.t1 |
| chr5.2 | exon | 80074470 | 80074808 | 80074470 | ID=MS.gene81366.t1.exon5;Parent=MS.gene81366.t1 |
| chr5.2 | CDS | 80074470 | 80074808 | 80074470 | ID=cds.MS.gene81366.t1;Parent=MS.gene81366.t1 |
| Gene Sequence |
| Protein sequence |
