Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82042.t1 | XP_003600919.1 | 90.9 | 519 | 45 | 1 | 1 | 519 | 1 | 517 | 2.60E-274 | 954.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82042.t1 | Q9XEE6 | 47.9 | 568 | 223 | 16 | 10 | 517 | 33 | 587 | 1.9e-124 | 447.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82042.t1 | G7JBT0 | 90.9 | 519 | 45 | 1 | 1 | 519 | 1 | 517 | 1.9e-274 | 954.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene82042.t1 | TF | C3H |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051226 | MS.gene82042 | 0.815628 | 8.39E-52 | -1.69E-46 |
| MS.gene051837 | MS.gene82042 | 0.840303 | 9.43E-58 | -1.69E-46 |
| MS.gene052091 | MS.gene82042 | 0.808385 | 3.18E-50 | -1.69E-46 |
| MS.gene05527 | MS.gene82042 | 0.822373 | 2.45E-53 | -1.69E-46 |
| MS.gene055549 | MS.gene82042 | 0.812926 | 3.32E-51 | -1.69E-46 |
| MS.gene055550 | MS.gene82042 | 0.818303 | 2.10E-52 | -1.69E-46 |
| MS.gene055551 | MS.gene82042 | 0.810049 | 1.40E-50 | -1.69E-46 |
| MS.gene057093 | MS.gene82042 | 0.85281 | 3.62E-61 | -1.69E-46 |
| MS.gene06061 | MS.gene82042 | 0.822135 | 2.79E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82042.t1 | MTR_3g070880 | 90.944 | 519 | 45 | 1 | 1 | 519 | 1 | 517 | 0.0 | 984 |
| MS.gene82042.t1 | MTR_5g082830 | 52.640 | 663 | 164 | 20 | 1 | 517 | 16 | 674 | 0.0 | 587 |
| MS.gene82042.t1 | MTR_5g071070 | 39.021 | 674 | 236 | 17 | 8 | 517 | 33 | 695 | 1.17e-140 | 422 |
| MS.gene82042.t1 | MTR_1g075890 | 43.091 | 550 | 207 | 16 | 2 | 460 | 25 | 559 | 3.74e-125 | 380 |
| MS.gene82042.t1 | MTR_5g071070 | 37.981 | 624 | 212 | 17 | 58 | 517 | 1 | 613 | 1.93e-119 | 365 |
| MS.gene82042.t1 | MTR_7g092070 | 35.303 | 660 | 234 | 19 | 8 | 494 | 45 | 684 | 5.03e-107 | 336 |
| MS.gene82042.t1 | MTR_3g464260 | 36.949 | 544 | 193 | 17 | 13 | 487 | 28 | 490 | 3.69e-87 | 278 |
| MS.gene82042.t1 | MTR_3g029590 | 32.335 | 668 | 251 | 20 | 8 | 494 | 43 | 690 | 5.80e-83 | 272 |
| MS.gene82042.t1 | MTR_3g435590 | 42.857 | 322 | 127 | 4 | 8 | 274 | 30 | 349 | 7.48e-82 | 263 |
| MS.gene82042.t1 | MTR_3g464280 | 36.811 | 508 | 189 | 16 | 26 | 460 | 33 | 481 | 2.29e-75 | 246 |
| MS.gene82042.t1 | MTR_1g050438 | 40.663 | 332 | 137 | 7 | 9 | 280 | 14 | 345 | 3.36e-74 | 246 |
| MS.gene82042.t1 | MTR_0728s0020 | 40.663 | 332 | 137 | 7 | 9 | 280 | 30 | 361 | 1.10e-73 | 245 |
| MS.gene82042.t1 | MTR_3g435680 | 47.867 | 211 | 82 | 3 | 103 | 289 | 67 | 273 | 7.84e-62 | 208 |
| MS.gene82042.t1 | MTR_3g103960 | 53.247 | 154 | 58 | 3 | 153 | 305 | 43 | 183 | 8.58e-48 | 167 |
| MS.gene82042.t1 | MTR_6g090380 | 62.963 | 108 | 40 | 0 | 158 | 265 | 98 | 205 | 5.11e-47 | 168 |
| MS.gene82042.t1 | MTR_8g102100 | 57.377 | 122 | 52 | 0 | 159 | 280 | 77 | 198 | 6.67e-47 | 168 |
| MS.gene82042.t1 | MTR_3g464270 | 35.676 | 370 | 171 | 14 | 162 | 485 | 8 | 356 | 3.02e-46 | 165 |
| MS.gene82042.t1 | MTR_3g464290 | 34.279 | 423 | 199 | 15 | 122 | 487 | 51 | 451 | 6.50e-46 | 167 |
| MS.gene82042.t1 | MTR_2g090605 | 58.559 | 111 | 46 | 0 | 163 | 273 | 77 | 187 | 2.08e-42 | 156 |
| MS.gene82042.t1 | MTR_4g078660 | 58.879 | 107 | 44 | 0 | 159 | 265 | 56 | 162 | 2.75e-42 | 154 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82042.t1 | AT3G55980 | 47.727 | 572 | 205 | 20 | 10 | 517 | 30 | 571 | 2.29e-154 | 453 |
| MS.gene82042.t1 | AT2G40140 | 47.569 | 576 | 229 | 16 | 2 | 517 | 25 | 587 | 4.37e-154 | 452 |
| MS.gene82042.t1 | AT2G40140 | 47.569 | 576 | 229 | 16 | 2 | 517 | 25 | 587 | 4.37e-154 | 452 |
| MS.gene82042.t1 | AT3G55980 | 47.727 | 572 | 205 | 20 | 10 | 517 | 97 | 638 | 3.20e-153 | 452 |
| MS.gene82042.t1 | AT5G58620 | 44.330 | 582 | 213 | 16 | 8 | 487 | 12 | 584 | 4.07e-140 | 417 |
| MS.gene82042.t1 | AT5G12850 | 51.073 | 233 | 81 | 7 | 139 | 341 | 235 | 464 | 3.96e-71 | 240 |
| MS.gene82042.t1 | AT5G12850 | 42.982 | 114 | 64 | 1 | 8 | 121 | 40 | 152 | 2.37e-24 | 107 |
| MS.gene82042.t1 | AT4G29190 | 52.121 | 165 | 67 | 3 | 148 | 300 | 64 | 228 | 7.03e-49 | 172 |
| MS.gene82042.t1 | AT2G19810 | 60.833 | 120 | 47 | 0 | 148 | 267 | 63 | 182 | 8.31e-49 | 172 |
| MS.gene82042.t1 | AT2G25900 | 55.474 | 137 | 56 | 1 | 159 | 295 | 86 | 217 | 8.90e-49 | 171 |
| MS.gene82042.t1 | AT2G25900 | 55.474 | 137 | 56 | 1 | 159 | 295 | 86 | 217 | 8.90e-49 | 171 |
| MS.gene82042.t1 | AT5G07500 | 56.098 | 123 | 54 | 0 | 143 | 265 | 32 | 154 | 8.09e-48 | 166 |
| MS.gene82042.t1 | AT1G03790 | 51.049 | 143 | 60 | 3 | 139 | 277 | 64 | 200 | 4.48e-41 | 152 |
| MS.gene82042.t1 | AT5G44260 | 52.308 | 130 | 55 | 2 | 139 | 267 | 42 | 165 | 1.17e-39 | 148 |
| MS.gene82042.t1 | AT2G41900 | 45.614 | 114 | 62 | 0 | 8 | 121 | 46 | 159 | 1.98e-27 | 117 |
Find 103 sgRNAs with CRISPR-Local
Find 116 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGAACATGGTTCCTATTT+TGG | 0.050071 | 3.2:-64469552 | None:intergenic |
| TCTGAGAATTCTGAGATATT+TGG | 0.200828 | 3.2:+64469940 | MS.gene82042:CDS |
| GAGTTTAACAATCTCAAATT+TGG | 0.214609 | 3.2:-64468777 | None:intergenic |
| CTTATGATTGCTTCTTTGTT+TGG | 0.252453 | 3.2:+64468641 | MS.gene82042:CDS |
| CAGATTGGATTTCAAATGAT+TGG | 0.257763 | 3.2:+64469782 | MS.gene82042:CDS |
| GAAGTTGAGAAGAAAGATTC+AGG | 0.258178 | 3.2:+64468881 | MS.gene82042:CDS |
| CTTCTTTGTTTGGAAGCATT+AGG | 0.280824 | 3.2:+64468651 | MS.gene82042:CDS |
| CAGCTATAAGGATACTTCTT+TGG | 0.295350 | 3.2:-64469067 | None:intergenic |
| CACATGTAATTTCCATTCTT+AGG | 0.300468 | 3.2:-64469370 | None:intergenic |
| ATTCAAGTAAAGTTGAGTTT+TGG | 0.301880 | 3.2:-64468487 | None:intergenic |
| TTCTTTGTTTGGAAGCATTA+GGG | 0.311661 | 3.2:+64468652 | MS.gene82042:CDS |
| AAAACACCATTGTTTATATC+AGG | 0.317396 | 3.2:-64468926 | None:intergenic |
| GGTTTCAGCTGAACCAAAAT+AGG | 0.320831 | 3.2:+64469539 | MS.gene82042:CDS |
| ACTCACATGCATCTTTCTTC+TGG | 0.348032 | 3.2:-64469123 | None:intergenic |
| GCATTACATTGTGCTGTTGC+TGG | 0.358959 | 3.2:+64468743 | MS.gene82042:CDS |
| GGTGTTGAAACATTTGAAAT+TGG | 0.379750 | 3.2:-64469316 | None:intergenic |
| ATTTGAGATTGTTAAACTCT+TGG | 0.381581 | 3.2:+64468781 | MS.gene82042:CDS |
| AGGCCTTTGTATGCTTCTAC+TGG | 0.382036 | 3.2:+64469265 | MS.gene82042:CDS |
| ATATCAATGAGGCAGGGTTT+TGG | 0.392554 | 3.2:+64468567 | MS.gene82042:CDS |
| GCATGTCCCTTTGCGAAACT+CGG | 0.397119 | 3.2:-64469101 | None:intergenic |
| CTGCCCATGGTGATAACTTC+TGG | 0.401773 | 3.2:-64469993 | None:intergenic |
| AGATTGGATTTCAAATGATT+GGG | 0.403651 | 3.2:+64469783 | MS.gene82042:CDS |
| GTTAAACTCTTGGTTGATGC+TGG | 0.410340 | 3.2:+64468791 | MS.gene82042:CDS |
| CAAACAAAGAAGCAATCATA+AGG | 0.422681 | 3.2:-64468640 | None:intergenic |
| CAAAAGGGAAGTAGAAGAAA+AGG | 0.424560 | 3.2:+64468538 | MS.gene82042:CDS |
| ATGATATTGAAGCTTTCAAA+AGG | 0.425062 | 3.2:+64468522 | MS.gene82042:CDS |
| ACATCCGGTTCAACATGTTC+TGG | 0.431115 | 3.2:-64469883 | None:intergenic |
| TGCAATCTATGACTATGAAT+AGG | 0.431537 | 3.2:+64469518 | MS.gene82042:CDS |
| AAGGGATTTGTATCAAGAAA+TGG | 0.446940 | 3.2:+64469450 | MS.gene82042:CDS |
| GTTCATCCTACTGTTGGATT+CGG | 0.447818 | 3.2:-64469749 | None:intergenic |
| AAACAAAGAAGCAATCATAA+GGG | 0.448581 | 3.2:-64468639 | None:intergenic |
| GGGCACGGAACACAGCTATA+AGG | 0.448836 | 3.2:-64469079 | None:intergenic |
| AACATGTTCTGGCCGTGCCA+CGG | 0.451893 | 3.2:-64469872 | None:intergenic |
| TTCTCCCCTGGATGAACAAA+TGG | 0.453606 | 3.2:-64469028 | None:intergenic |
| CTGCAGCAGTGAAGAATTCA+AGG | 0.455073 | 3.2:+64469656 | MS.gene82042:CDS |
| CATGTCCCTTTGCGAAACTC+GGG | 0.458325 | 3.2:-64469100 | None:intergenic |
| CAAGAAATGGATTTGTTACA+TGG | 0.458953 | 3.2:+64469463 | MS.gene82042:CDS |
| GGCTATGATATCAATGAGGC+AGG | 0.459884 | 3.2:+64468560 | MS.gene82042:CDS |
| TGAACTCTGGTCACTCAGAT+TGG | 0.460181 | 3.2:+64469767 | MS.gene82042:CDS |
| CACCGCGATCCATAAAACTT+TGG | 0.461341 | 3.2:-64469702 | None:intergenic |
| GAGTGTCCATTTGTTCATCC+AGG | 0.473709 | 3.2:+64469022 | MS.gene82042:CDS |
| ACATGTTCTGGCCGTGCCAC+GGG | 0.474667 | 3.2:-64469871 | None:intergenic |
| GCTGATTCATCTCCTAAGAA+TGG | 0.478855 | 3.2:+64469358 | MS.gene82042:CDS |
| TTCATCCAGGGGAGAATGCT+AGG | 0.479775 | 3.2:+64469035 | MS.gene82042:CDS |
| ATGAGAAAACCATCAGCATA+TGG | 0.480414 | 3.2:+64469610 | MS.gene82042:CDS |
| TGCAATCGAGTAGGAGTTGA+AGG | 0.485579 | 3.2:-64469499 | None:intergenic |
| ACGGCCAGAACATGTTGAAC+CGG | 0.490202 | 3.2:+64469879 | MS.gene82042:CDS |
| ACCAGAGTTCATCCTACTGT+TGG | 0.492760 | 3.2:-64469755 | None:intergenic |
| CAAGGGGTTACACTCATGAT+TGG | 0.497804 | 3.2:+64468996 | MS.gene82042:CDS |
| GATGAAACAGTGTTGTTGAA+TGG | 0.499041 | 3.2:-64469583 | None:intergenic |
| GAATGAACCCACGAGACATC+CGG | 0.501123 | 3.2:-64469898 | None:intergenic |
| ATTTGATTCATCAGCTGCTA+TGG | 0.506008 | 3.2:+64469633 | MS.gene82042:CDS |
| ATCACCATGGGCAGAGCAGA+TGG | 0.529162 | 3.2:+64470002 | MS.gene82042:CDS |
| AACACCACCTATGTCTCCAT+TGG | 0.529230 | 3.2:+64469333 | MS.gene82042:CDS |
| AAAAGGGAAGTAGAAGAAAA+GGG | 0.532219 | 3.2:+64468539 | MS.gene82042:CDS |
| CTTCTCCTAGCATTCTCCCC+TGG | 0.532406 | 3.2:-64469040 | None:intergenic |
| GTTAATGTGAACATGGCAAT+TGG | 0.535532 | 3.2:+64468704 | MS.gene82042:CDS |
| GGTTCATTCGCTTGTTCAAG+AGG | 0.536739 | 3.2:+64469912 | MS.gene82042:CDS |
| GCTACCATCTGCTCTGCCCA+TGG | 0.541733 | 3.2:-64470006 | None:intergenic |
| CCGTGCCCCGAGTTTCGCAA+AGG | 0.542263 | 3.2:+64469094 | MS.gene82042:CDS |
| CGTGCCCCGAGTTTCGCAAA+GGG | 0.545575 | 3.2:+64469095 | MS.gene82042:CDS |
| ATTGGCAAAGATTCTTGTGA+AGG | 0.549932 | 3.2:-64469298 | None:intergenic |
| CAAAGTGAAGACTTGCTCAA+GGG | 0.550348 | 3.2:+64468979 | MS.gene82042:CDS |
| AGTGTCCATTTGTTCATCCA+GGG | 0.552058 | 3.2:+64469023 | MS.gene82042:CDS |
| AGCCTTGTTCTGTATTGTGC+AGG | 0.555273 | 3.2:-64469178 | None:intergenic |
| TCAGCTACCAATGGAGACAT+AGG | 0.556570 | 3.2:-64469340 | None:intergenic |
| TAGTTGCTTCGCCCGTGGCA+CGG | 0.561386 | 3.2:+64469860 | MS.gene82042:CDS |
| TCAAAGTGAAGACTTGCTCA+AGG | 0.569283 | 3.2:+64468978 | MS.gene82042:CDS |
| TGATATTGAAGCTTTCAAAA+GGG | 0.570886 | 3.2:+64468523 | MS.gene82042:CDS |
| ATGTTGAACCGGATGTCTCG+TGG | 0.581147 | 3.2:+64469890 | MS.gene82042:CDS |
| CCTTTGCGAAACTCGGGGCA+CGG | 0.588011 | 3.2:-64469094 | None:intergenic |
| TATGGTAGTTGCTTCGCCCG+TGG | 0.589438 | 3.2:+64469855 | MS.gene82042:CDS |
| TTACATTGTGCTGTTGCTGG+TGG | 0.591769 | 3.2:+64468746 | MS.gene82042:CDS |
| GGAGATGAATCAGCTACCAA+TGG | 0.593824 | 3.2:-64469349 | None:intergenic |
| ACTTTGGCTTCGTGTCGCAA+AGG | 0.595220 | 3.2:-64469686 | None:intergenic |
| GAATCAAATCCATATGCTGA+TGG | 0.601293 | 3.2:-64469619 | None:intergenic |
| AAAGTGAAGACTTGCTCAAG+GGG | 0.602277 | 3.2:+64468980 | MS.gene82042:CDS |
| TCCAACAGTAGGATGAACTC+TGG | 0.604125 | 3.2:+64469754 | MS.gene82042:CDS |
| AAACATGGTTAATGTGAACA+TGG | 0.608674 | 3.2:+64468697 | MS.gene82042:CDS |
| TAACCAGAAGTTATCACCAT+GGG | 0.608964 | 3.2:+64469990 | MS.gene82042:CDS |
| GTCATAGATTGCAATCGAGT+AGG | 0.610586 | 3.2:-64469508 | None:intergenic |
| CTAAGAATGGAAATTACATG+TGG | 0.612183 | 3.2:+64469371 | MS.gene82042:CDS |
| TTTGTTTGGAAGCATTAGGG+TGG | 0.614081 | 3.2:+64468655 | MS.gene82042:CDS |
| CACACAAACATGAAGAGTTG+AGG | 0.614467 | 3.2:+64469245 | MS.gene82042:CDS |
| ATGGATAATTTGCTTGAACA+TGG | 0.617719 | 3.2:-64469564 | None:intergenic |
| ATGTCCCTTTGCGAAACTCG+GGG | 0.621584 | 3.2:-64469099 | None:intergenic |
| CTGAGATATTTGGTGCTGAG+CGG | 0.624831 | 3.2:+64469950 | MS.gene82042:CDS |
| GTGCTTCCGAATCCAACAGT+AGG | 0.625292 | 3.2:+64469743 | MS.gene82042:CDS |
| TGTTGAACCGGATGTCTCGT+GGG | 0.635368 | 3.2:+64469891 | MS.gene82042:CDS |
| TCATTGCCTGATATAAACAA+TGG | 0.636775 | 3.2:+64468920 | MS.gene82042:CDS |
| AACAAAGAAGCAATCATAAG+GGG | 0.639045 | 3.2:-64468638 | None:intergenic |
| GTGTCCATTTGTTCATCCAG+GGG | 0.641621 | 3.2:+64469024 | MS.gene82042:CDS |
| ATCCTGCACAATACAGAACA+AGG | 0.644193 | 3.2:+64469176 | MS.gene82042:CDS |
| TGGATTCGGAAGCACTGATG+TGG | 0.653710 | 3.2:-64469735 | None:intergenic |
| ATATATCATTGAAACAAACA+TGG | 0.659164 | 3.2:+64468682 | MS.gene82042:CDS |
| GCTATGATATCAATGAGGCA+GGG | 0.681589 | 3.2:+64468561 | MS.gene82042:CDS |
| GCTACCAATGGAGACATAGG+TGG | 0.695473 | 3.2:-64469337 | None:intergenic |
| ATAACCAGAAGTTATCACCA+TGG | 0.698019 | 3.2:+64469989 | MS.gene82042:CDS |
| AAAGGGCTATGATATCAATG+AGG | 0.712259 | 3.2:+64468556 | MS.gene82042:CDS |
| GAACCAGTAGAAGCATACAA+AGG | 0.717416 | 3.2:-64469268 | None:intergenic |
| AAATATCTCAGAATTCTCAG+AGG | 0.724613 | 3.2:-64469938 | None:intergenic |
| GATGCATGTGAGTATTCACA+TGG | 0.742964 | 3.2:+64469133 | MS.gene82042:CDS |
| AATCGAGTAGGAGTTGAAGG+TGG | 0.744056 | 3.2:-64469496 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATCATTGAAACAAACA+TGG | + | chr3.2:64468682-64468701 | MS.gene82042:CDS | 20.0% |
| !!! | ACTTCTAATTCTTTTGATTT+AGG | - | chr3.2:64468866-64468885 | None:intergenic | 20.0% |
| !!! | TTTTGGATTTAGAAATTCTA+TGG | + | chr3.2:64469837-64469856 | MS.gene82042:CDS | 20.0% |
| !!! | TTTTGGTATTGTAGAAAAAT+AGG | + | chr3.2:64468584-64468603 | MS.gene82042:CDS | 20.0% |
| ! | AAAACACCATTGTTTATATC+AGG | - | chr3.2:64468929-64468948 | None:intergenic | 25.0% |
| ! | AAACAAAGAAGCAATCATAA+GGG | - | chr3.2:64468642-64468661 | None:intergenic | 25.0% |
| ! | AGATTGGATTTCAAATGATT+GGG | + | chr3.2:64469783-64469802 | MS.gene82042:CDS | 25.0% |
| ! | ATGATATTGAAGCTTTCAAA+AGG | + | chr3.2:64468522-64468541 | MS.gene82042:CDS | 25.0% |
| ! | GAGTTTAACAATCTCAAATT+TGG | - | chr3.2:64468780-64468799 | None:intergenic | 25.0% |
| ! | TGATATTGAAGCTTTCAAAA+GGG | + | chr3.2:64468523-64468542 | MS.gene82042:CDS | 25.0% |
| !! | ATTCAAGTAAAGTTGAGTTT+TGG | - | chr3.2:64468490-64468509 | None:intergenic | 25.0% |
| !! | ATTTGAGATTGTTAAACTCT+TGG | + | chr3.2:64468781-64468800 | MS.gene82042:CDS | 25.0% |
| !! | TTGAAAAAATCTGCTTCTTT+TGG | + | chr3.2:64469820-64469839 | MS.gene82042:CDS | 25.0% |
| AAAAGGGAAGTAGAAGAAAA+GGG | + | chr3.2:64468539-64468558 | MS.gene82042:CDS | 30.0% | |
| AAACATGGTTAATGTGAACA+TGG | + | chr3.2:64468697-64468716 | MS.gene82042:CDS | 30.0% | |
| AAATATCTCAGAATTCTCAG+AGG | - | chr3.2:64469941-64469960 | None:intergenic | 30.0% | |
| AACAAAGAAGCAATCATAAG+GGG | - | chr3.2:64468641-64468660 | None:intergenic | 30.0% | |
| AAGGGATTTGTATCAAGAAA+TGG | + | chr3.2:64469450-64469469 | MS.gene82042:CDS | 30.0% | |
| CAAACAAAGAAGCAATCATA+AGG | - | chr3.2:64468643-64468662 | None:intergenic | 30.0% | |
| CACATGTAATTTCCATTCTT+AGG | - | chr3.2:64469373-64469392 | None:intergenic | 30.0% | |
| CAGATTGGATTTCAAATGAT+TGG | + | chr3.2:64469782-64469801 | MS.gene82042:CDS | 30.0% | |
| CTAAGAATGGAAATTACATG+TGG | + | chr3.2:64469371-64469390 | MS.gene82042:CDS | 30.0% | |
| CTTATGATTGCTTCTTTGTT+TGG | + | chr3.2:64468641-64468660 | MS.gene82042:CDS | 30.0% | |
| TCATTGCCTGATATAAACAA+TGG | + | chr3.2:64468920-64468939 | MS.gene82042:CDS | 30.0% | |
| TGCAATCTATGACTATGAAT+AGG | + | chr3.2:64469518-64469537 | MS.gene82042:CDS | 30.0% | |
| ! | GGTGTTGAAACATTTGAAAT+TGG | - | chr3.2:64469319-64469338 | None:intergenic | 30.0% |
| !! | ATGGATAATTTGCTTGAACA+TGG | - | chr3.2:64469567-64469586 | None:intergenic | 30.0% |
| !! | CAAGAAATGGATTTGTTACA+TGG | + | chr3.2:64469463-64469482 | MS.gene82042:CDS | 30.0% |
| !! | TCTGAGAATTCTGAGATATT+TGG | + | chr3.2:64469940-64469959 | MS.gene82042:CDS | 30.0% |
| !! | TTCTTTGTTTGGAAGCATTA+GGG | + | chr3.2:64468652-64468671 | MS.gene82042:CDS | 30.0% |
| !!! | CTGCTTAATTTTTTCGTCAA+GGG | - | chr3.2:64468831-64468850 | None:intergenic | 30.0% |
| !!! | TCTGCTTAATTTTTTCGTCA+AGG | - | chr3.2:64468832-64468851 | None:intergenic | 30.0% |
| AAAGGGCTATGATATCAATG+AGG | + | chr3.2:64468556-64468575 | MS.gene82042:CDS | 35.0% | |
| ATAACCAGAAGTTATCACCA+TGG | + | chr3.2:64469989-64470008 | MS.gene82042:CDS | 35.0% | |
| ATGAGAAAACCATCAGCATA+TGG | + | chr3.2:64469610-64469629 | MS.gene82042:CDS | 35.0% | |
| ATTGGCAAAGATTCTTGTGA+AGG | - | chr3.2:64469301-64469320 | None:intergenic | 35.0% | |
| ATTTGATTCATCAGCTGCTA+TGG | + | chr3.2:64469633-64469652 | MS.gene82042:CDS | 35.0% | |
| CAAAAGGGAAGTAGAAGAAA+AGG | + | chr3.2:64468538-64468557 | MS.gene82042:CDS | 35.0% | |
| CAGCTATAAGGATACTTCTT+TGG | - | chr3.2:64469070-64469089 | None:intergenic | 35.0% | |
| GAAGTTGAGAAGAAAGATTC+AGG | + | chr3.2:64468881-64468900 | MS.gene82042:CDS | 35.0% | |
| GAATCAAATCCATATGCTGA+TGG | - | chr3.2:64469622-64469641 | None:intergenic | 35.0% | |
| GTTAATGTGAACATGGCAAT+TGG | + | chr3.2:64468704-64468723 | MS.gene82042:CDS | 35.0% | |
| TAACCAGAAGTTATCACCAT+GGG | + | chr3.2:64469990-64470009 | MS.gene82042:CDS | 35.0% | |
| ! | CTTGAACATGGTTCCTATTT+TGG | - | chr3.2:64469555-64469574 | None:intergenic | 35.0% |
| ! | GAAAAATGCTTTGAGTGCAA+GGG | + | chr3.2:64469432-64469451 | MS.gene82042:CDS | 35.0% |
| ! | GATGAAACAGTGTTGTTGAA+TGG | - | chr3.2:64469586-64469605 | None:intergenic | 35.0% |
| ! | TATGCTGATGGTTTTCTCAT+AGG | - | chr3.2:64469610-64469629 | None:intergenic | 35.0% |
| ! | TGAAAAATGCTTTGAGTGCA+AGG | + | chr3.2:64469431-64469450 | MS.gene82042:CDS | 35.0% |
| !! | CTTCTTTGTTTGGAAGCATT+AGG | + | chr3.2:64468651-64468670 | MS.gene82042:CDS | 35.0% |
| ACTCACATGCATCTTTCTTC+TGG | - | chr3.2:64469126-64469145 | None:intergenic | 40.0% | |
| AGTGTCCATTTGTTCATCCA+GGG | + | chr3.2:64469023-64469042 | MS.gene82042:CDS | 40.0% | |
| ATCCTGCACAATACAGAACA+AGG | + | chr3.2:64469176-64469195 | MS.gene82042:CDS | 40.0% | |
| CACACAAACATGAAGAGTTG+AGG | + | chr3.2:64469245-64469264 | MS.gene82042:CDS | 40.0% | |
| GATGCATGTGAGTATTCACA+TGG | + | chr3.2:64469133-64469152 | MS.gene82042:CDS | 40.0% | |
| GCTATGATATCAATGAGGCA+GGG | + | chr3.2:64468561-64468580 | MS.gene82042:CDS | 40.0% | |
| GGTTTCAGCTGAACCAAAAT+AGG | + | chr3.2:64469539-64469558 | MS.gene82042:CDS | 40.0% | |
| GTCATAGATTGCAATCGAGT+AGG | - | chr3.2:64469511-64469530 | None:intergenic | 40.0% | |
| GTTCATCCTACTGTTGGATT+CGG | - | chr3.2:64469752-64469771 | None:intergenic | 40.0% | |
| ! | AAAGTGAAGACTTGCTCAAG+GGG | + | chr3.2:64468980-64468999 | MS.gene82042:CDS | 40.0% |
| ! | ATATCAATGAGGCAGGGTTT+TGG | + | chr3.2:64468567-64468586 | MS.gene82042:CDS | 40.0% |
| ! | CAAAGTGAAGACTTGCTCAA+GGG | + | chr3.2:64468979-64468998 | MS.gene82042:CDS | 40.0% |
| ! | GAACCAGTAGAAGCATACAA+AGG | - | chr3.2:64469271-64469290 | None:intergenic | 40.0% |
| ! | GACACGAAGCCAAAGTTTTA+TGG | + | chr3.2:64469693-64469712 | MS.gene82042:CDS | 40.0% |
| ! | GCTGATTCATCTCCTAAGAA+TGG | + | chr3.2:64469358-64469377 | MS.gene82042:CDS | 40.0% |
| ! | GTTAAACTCTTGGTTGATGC+TGG | + | chr3.2:64468791-64468810 | MS.gene82042:CDS | 40.0% |
| ! | TCAAAGTGAAGACTTGCTCA+AGG | + | chr3.2:64468978-64468997 | MS.gene82042:CDS | 40.0% |
| !! | AGCCAAAGTTTTATGGATCG+CGG | + | chr3.2:64469700-64469719 | MS.gene82042:CDS | 40.0% |
| !! | GCATTTTTCAGCTGCAATGA+AGG | - | chr3.2:64469421-64469440 | None:intergenic | 40.0% |
| !! | TTTGTTTGGAAGCATTAGGG+TGG | + | chr3.2:64468655-64468674 | MS.gene82042:CDS | 40.0% |
| !! | TTTTTCAGCTGCAATGAAGG+TGG | - | chr3.2:64469418-64469437 | None:intergenic | 40.0% |
| AACACCACCTATGTCTCCAT+TGG | + | chr3.2:64469333-64469352 | MS.gene82042:CDS | 45.0% | |
| AATCGAGTAGGAGTTGAAGG+TGG | - | chr3.2:64469499-64469518 | None:intergenic | 45.0% | |
| ACATCCGGTTCAACATGTTC+TGG | - | chr3.2:64469886-64469905 | None:intergenic | 45.0% | |
| ACCAGAGTTCATCCTACTGT+TGG | - | chr3.2:64469758-64469777 | None:intergenic | 45.0% | |
| AGGCCTTTGTATGCTTCTAC+TGG | + | chr3.2:64469265-64469284 | MS.gene82042:CDS | 45.0% | |
| CAAGGGGTTACACTCATGAT+TGG | + | chr3.2:64468996-64469015 | MS.gene82042:CDS | 45.0% | |
| CACCGCGATCCATAAAACTT+TGG | - | chr3.2:64469705-64469724 | None:intergenic | 45.0% | |
| CTGCAGCAGTGAAGAATTCA+AGG | + | chr3.2:64469656-64469675 | MS.gene82042:CDS | 45.0% | |
| GAGTGTCCATTTGTTCATCC+AGG | + | chr3.2:64469022-64469041 | MS.gene82042:CDS | 45.0% | |
| GGAGATGAATCAGCTACCAA+TGG | - | chr3.2:64469352-64469371 | None:intergenic | 45.0% | |
| GGCTATGATATCAATGAGGC+AGG | + | chr3.2:64468560-64468579 | MS.gene82042:CDS | 45.0% | |
| GGTTCATTCGCTTGTTCAAG+AGG | + | chr3.2:64469912-64469931 | MS.gene82042:CDS | 45.0% | |
| GTGTCCATTTGTTCATCCAG+GGG | + | chr3.2:64469024-64469043 | MS.gene82042:CDS | 45.0% | |
| TCAGCTACCAATGGAGACAT+AGG | - | chr3.2:64469343-64469362 | None:intergenic | 45.0% | |
| TCCAACAGTAGGATGAACTC+TGG | + | chr3.2:64469754-64469773 | MS.gene82042:CDS | 45.0% | |
| TGAACTCTGGTCACTCAGAT+TGG | + | chr3.2:64469767-64469786 | MS.gene82042:CDS | 45.0% | |
| TGCAATCGAGTAGGAGTTGA+AGG | - | chr3.2:64469502-64469521 | None:intergenic | 45.0% | |
| TTCTCCCCTGGATGAACAAA+TGG | - | chr3.2:64469031-64469050 | None:intergenic | 45.0% | |
| ! | GCATTACATTGTGCTGTTGC+TGG | + | chr3.2:64468743-64468762 | MS.gene82042:CDS | 45.0% |
| ! | TTACATTGTGCTGTTGCTGG+TGG | + | chr3.2:64468746-64468765 | MS.gene82042:CDS | 45.0% |
| !! | AGCCTTGTTCTGTATTGTGC+AGG | - | chr3.2:64469181-64469200 | None:intergenic | 45.0% |
| !! | CTGAGATATTTGGTGCTGAG+CGG | + | chr3.2:64469950-64469969 | MS.gene82042:CDS | 45.0% |
| ACGGCCAGAACATGTTGAAC+CGG | + | chr3.2:64469879-64469898 | MS.gene82042:CDS | 50.0% | |
| ATGTCCCTTTGCGAAACTCG+GGG | - | chr3.2:64469102-64469121 | None:intergenic | 50.0% | |
| ATGTTGAACCGGATGTCTCG+TGG | + | chr3.2:64469890-64469909 | MS.gene82042:CDS | 50.0% | |
| CATGTCCCTTTGCGAAACTC+GGG | - | chr3.2:64469103-64469122 | None:intergenic | 50.0% | |
| CTGCCCATGGTGATAACTTC+TGG | - | chr3.2:64469996-64470015 | None:intergenic | 50.0% | |
| GAATGAACCCACGAGACATC+CGG | - | chr3.2:64469901-64469920 | None:intergenic | 50.0% | |
| GCATGTCCCTTTGCGAAACT+CGG | - | chr3.2:64469104-64469123 | None:intergenic | 50.0% | |
| GCTACCAATGGAGACATAGG+TGG | - | chr3.2:64469340-64469359 | None:intergenic | 50.0% | |
| GTGCTTCCGAATCCAACAGT+AGG | + | chr3.2:64469743-64469762 | MS.gene82042:CDS | 50.0% | |
| TGTTGAACCGGATGTCTCGT+GGG | + | chr3.2:64469891-64469910 | MS.gene82042:CDS | 50.0% | |
| TTCATCCAGGGGAGAATGCT+AGG | + | chr3.2:64469035-64469054 | MS.gene82042:CDS | 50.0% | |
| ! | ACTTTGGCTTCGTGTCGCAA+AGG | - | chr3.2:64469689-64469708 | None:intergenic | 50.0% |
| !! | TGGATTCGGAAGCACTGATG+TGG | - | chr3.2:64469738-64469757 | None:intergenic | 50.0% |
| AACATGTTCTGGCCGTGCCA+CGG | - | chr3.2:64469875-64469894 | None:intergenic | 55.0% | |
| ATCACCATGGGCAGAGCAGA+TGG | + | chr3.2:64470002-64470021 | MS.gene82042:CDS | 55.0% | |
| CTTCTCCTAGCATTCTCCCC+TGG | - | chr3.2:64469043-64469062 | None:intergenic | 55.0% | |
| GGGCACGGAACACAGCTATA+AGG | - | chr3.2:64469082-64469101 | None:intergenic | 55.0% | |
| TATGGTAGTTGCTTCGCCCG+TGG | + | chr3.2:64469855-64469874 | MS.gene82042:CDS | 55.0% | |
| ACATGTTCTGGCCGTGCCAC+GGG | - | chr3.2:64469874-64469893 | None:intergenic | 60.0% | |
| CCTTTGCGAAACTCGGGGCA+CGG | - | chr3.2:64469097-64469116 | None:intergenic | 60.0% | |
| CGTGCCCCGAGTTTCGCAAA+GGG | + | chr3.2:64469095-64469114 | MS.gene82042:CDS | 60.0% | |
| GCTACCATCTGCTCTGCCCA+TGG | - | chr3.2:64470009-64470028 | None:intergenic | 60.0% | |
| TAGTTGCTTCGCCCGTGGCA+CGG | + | chr3.2:64469860-64469879 | MS.gene82042:CDS | 60.0% | |
| CCGTGCCCCGAGTTTCGCAA+AGG | + | chr3.2:64469094-64469113 | MS.gene82042:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 64468473 | 64470032 | 64468473 | ID=MS.gene82042 |
| chr3.2 | mRNA | 64468473 | 64470032 | 64468473 | ID=MS.gene82042.t1;Parent=MS.gene82042 |
| chr3.2 | exon | 64468473 | 64470032 | 64468473 | ID=MS.gene82042.t1.exon1;Parent=MS.gene82042.t1 |
| chr3.2 | CDS | 64468473 | 64470032 | 64468473 | ID=cds.MS.gene82042.t1;Parent=MS.gene82042.t1 |
| Gene Sequence |
| Protein sequence |
