Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene82211.t1 | XP_003605289.1 | 97.6 | 901 | 21 | 1 | 1 | 901 | 1 | 900 | 0.00E+00 | 1728.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene82211.t1 | Q6Z3U3 | 48.5 | 953 | 409 | 19 | 3 | 899 | 14 | 940 | 2.9e-213 | 743.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene82211.t1 | G7JIB0 | 97.6 | 901 | 21 | 1 | 1 | 901 | 1 | 900 | 0.0e+00 | 1728.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene82211.t1 | TF | B3 |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene050257 | MS.gene82211 | 0.802617 | 5.15E-49 | -1.69E-46 |
MS.gene050258 | MS.gene82211 | 0.804675 | 1.93E-49 | -1.69E-46 |
MS.gene050945 | MS.gene82211 | 0.801738 | 7.82E-49 | -1.69E-46 |
MS.gene054178 | MS.gene82211 | 0.814774 | 1.30E-51 | -1.69E-46 |
MS.gene055221 | MS.gene82211 | 0.804116 | 2.52E-49 | -1.69E-46 |
MS.gene055513 | MS.gene82211 | 0.801419 | 9.09E-49 | -1.69E-46 |
MS.gene057102 | MS.gene82211 | 0.809197 | 2.13E-50 | -1.69E-46 |
MS.gene059778 | MS.gene82211 | 0.865923 | 4.15E-65 | -1.69E-46 |
MS.gene05985 | MS.gene82211 | -0.821127 | 4.76E-53 | -1.69E-46 |
MS.gene061100 | MS.gene82211 | 0.827226 | 1.76E-54 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene82211.t1 | MTR_4g028130 | 97.558 | 901 | 21 | 1 | 1 | 901 | 1 | 900 | 0.0 | 1822 |
MS.gene82211.t1 | MTR_4g028130 | 93.563 | 901 | 21 | 1 | 1 | 901 | 1 | 864 | 0.0 | 1733 |
MS.gene82211.t1 | MTR_4g028130 | 97.348 | 641 | 16 | 1 | 1 | 641 | 1 | 640 | 0.0 | 1302 |
MS.gene82211.t1 | MTR_3g467380 | 48.337 | 902 | 414 | 13 | 19 | 887 | 16 | 898 | 0.0 | 789 |
MS.gene82211.t1 | MTR_5g075410 | 43.426 | 829 | 403 | 12 | 1 | 815 | 1 | 777 | 0.0 | 611 |
MS.gene82211.t1 | MTR_2g011940 | 51.783 | 589 | 212 | 14 | 270 | 839 | 299 | 834 | 7.78e-180 | 543 |
MS.gene82211.t1 | MTR_2g011940 | 43.411 | 129 | 56 | 2 | 4 | 132 | 20 | 131 | 2.28e-26 | 116 |
MS.gene82211.t1 | MTR_2g011940 | 55.978 | 368 | 124 | 4 | 270 | 637 | 308 | 637 | 6.87e-128 | 400 |
MS.gene82211.t1 | MTR_2g011940 | 43.411 | 129 | 56 | 2 | 4 | 132 | 29 | 140 | 1.51e-26 | 116 |
MS.gene82211.t1 | MTR_2g011940 | 55.978 | 368 | 124 | 4 | 270 | 637 | 308 | 637 | 2.10e-127 | 399 |
MS.gene82211.t1 | MTR_2g011940 | 43.411 | 129 | 56 | 2 | 4 | 132 | 29 | 140 | 2.64e-26 | 115 |
MS.gene82211.t1 | MTR_7g073240 | 55.357 | 224 | 97 | 2 | 199 | 419 | 3 | 226 | 4.41e-70 | 236 |
MS.gene82211.t1 | MTR_7g073240 | 52.817 | 142 | 52 | 4 | 485 | 624 | 230 | 358 | 2.12e-38 | 147 |
MS.gene82211.t1 | MTR_7g083700 | 39.806 | 103 | 61 | 1 | 314 | 415 | 126 | 228 | 1.96e-18 | 87.8 |
MS.gene82211.t1 | MTR_7g059330 | 35.714 | 98 | 62 | 1 | 314 | 410 | 623 | 720 | 1.20e-14 | 79.0 |
MS.gene82211.t1 | MTR_1g058350 | 36.090 | 133 | 65 | 6 | 295 | 414 | 54 | 179 | 1.71e-14 | 76.3 |
MS.gene82211.t1 | MTR_8g023990 | 37.273 | 110 | 61 | 4 | 314 | 417 | 171 | 278 | 3.27e-14 | 77.0 |
MS.gene82211.t1 | MTR_7g117455 | 40.659 | 91 | 49 | 3 | 314 | 401 | 117 | 205 | 9.13e-14 | 75.1 |
MS.gene82211.t1 | MTR_7g105370 | 39.252 | 107 | 58 | 5 | 319 | 421 | 65 | 168 | 8.59e-13 | 70.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene82211.t1 | AT4G32010 | 50.117 | 858 | 311 | 16 | 1 | 852 | 1 | 747 | 0.0 | 791 |
MS.gene82211.t1 | AT4G32010 | 49.884 | 862 | 311 | 17 | 1 | 852 | 1 | 751 | 0.0 | 786 |
MS.gene82211.t1 | AT2G30470 | 51.097 | 775 | 314 | 18 | 1 | 765 | 6 | 725 | 0.0 | 707 |
MS.gene82211.t1 | AT4G21550 | 34.407 | 590 | 290 | 14 | 3 | 570 | 14 | 528 | 1.51e-92 | 303 |
MS.gene82211.t1 | AT4G21550 | 34.915 | 590 | 288 | 11 | 3 | 571 | 14 | 528 | 4.11e-89 | 299 |
MS.gene82211.t1 | AT4G21550 | 37.795 | 127 | 57 | 3 | 687 | 812 | 550 | 655 | 8.11e-12 | 69.7 |
MS.gene82211.t1 | AT4G21550 | 33.798 | 574 | 284 | 12 | 3 | 555 | 14 | 512 | 1.95e-88 | 291 |
MS.gene82211.t1 | AT3G26790 | 39.450 | 109 | 65 | 1 | 314 | 421 | 91 | 199 | 7.69e-20 | 92.0 |
MS.gene82211.t1 | AT5G06250 | 32.948 | 173 | 95 | 5 | 314 | 467 | 45 | 215 | 1.00e-16 | 81.6 |
MS.gene82211.t1 | AT5G06250 | 32.948 | 173 | 95 | 5 | 314 | 467 | 45 | 215 | 1.08e-16 | 82.0 |
MS.gene82211.t1 | AT5G06250 | 32.948 | 173 | 95 | 5 | 314 | 467 | 45 | 215 | 1.11e-16 | 82.0 |
MS.gene82211.t1 | AT1G13260 | 40.000 | 110 | 59 | 5 | 314 | 418 | 187 | 294 | 1.80e-15 | 79.3 |
MS.gene82211.t1 | AT3G24650 | 37.931 | 116 | 70 | 2 | 314 | 427 | 571 | 686 | 2.47e-15 | 80.9 |
MS.gene82211.t1 | AT1G28300 | 40.741 | 108 | 60 | 3 | 294 | 398 | 149 | 255 | 3.59e-15 | 78.6 |
MS.gene82211.t1 | AT2G36080 | 39.815 | 108 | 56 | 4 | 314 | 414 | 37 | 142 | 3.84e-15 | 74.7 |
MS.gene82211.t1 | AT2G36080 | 39.815 | 108 | 56 | 4 | 314 | 414 | 37 | 142 | 3.84e-15 | 74.7 |
MS.gene82211.t1 | AT2G36080 | 39.815 | 108 | 56 | 4 | 314 | 414 | 37 | 142 | 4.28e-15 | 76.3 |
MS.gene82211.t1 | AT2G36080 | 39.815 | 108 | 56 | 4 | 314 | 414 | 37 | 142 | 4.93e-15 | 76.3 |
MS.gene82211.t1 | AT5G06250 | 36.923 | 130 | 56 | 5 | 314 | 419 | 45 | 172 | 5.22e-15 | 76.6 |
MS.gene82211.t1 | AT5G06250 | 33.103 | 145 | 81 | 4 | 314 | 444 | 45 | 187 | 5.82e-15 | 76.6 |
MS.gene82211.t1 | AT4G01500 | 38.261 | 115 | 59 | 4 | 297 | 401 | 9 | 121 | 2.72e-14 | 75.5 |
MS.gene82211.t1 | AT1G68840 | 43.011 | 93 | 46 | 4 | 314 | 401 | 187 | 277 | 3.86e-14 | 75.5 |
MS.gene82211.t1 | AT1G68840 | 43.011 | 93 | 46 | 4 | 314 | 401 | 187 | 277 | 3.86e-14 | 75.5 |
MS.gene82211.t1 | AT2G46870 | 39.560 | 91 | 50 | 3 | 314 | 401 | 34 | 122 | 8.18e-14 | 73.9 |
MS.gene82211.t1 | AT3G11580 | 36.207 | 116 | 57 | 4 | 314 | 414 | 28 | 141 | 6.95e-13 | 69.7 |
MS.gene82211.t1 | AT3G11580 | 36.207 | 116 | 57 | 4 | 314 | 414 | 28 | 141 | 6.95e-13 | 69.7 |
MS.gene82211.t1 | AT3G11580 | 36.207 | 116 | 57 | 4 | 314 | 414 | 28 | 141 | 6.95e-13 | 69.7 |
MS.gene82211.t1 | AT1G01030 | 40.659 | 91 | 49 | 3 | 314 | 401 | 55 | 143 | 7.76e-13 | 71.2 |
MS.gene82211.t1 | AT1G01030 | 40.659 | 91 | 49 | 3 | 314 | 401 | 55 | 143 | 8.93e-13 | 71.2 |
MS.gene82211.t1 | AT3G11580 | 36.207 | 116 | 57 | 4 | 314 | 414 | 28 | 141 | 4.22e-12 | 68.2 |
MS.gene82211.t1 | AT3G11580 | 36.207 | 116 | 57 | 4 | 314 | 414 | 28 | 141 | 4.27e-12 | 69.3 |
Find 240 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GGATGTTTCAATTTAGATTT+TGG | 0.133418 | 4.2:-75607583 | MS.gene82211:CDS |
TACATCCTGCTATTATTATT+TGG | 0.167699 | 4.2:+75607560 | None:intergenic |
CAACTCTTGATCTGTAATTC+TGG | 0.172835 | 4.2:+75608045 | None:intergenic |
TTACCCTCTGCTGGAGAATT+TGG | 0.185934 | 4.2:-75608421 | MS.gene82211:CDS |
GCATACCCCTCACATTTAAT+TGG | 0.234093 | 4.2:+75608542 | None:intergenic |
AAGAAAAGAACTCGAAATAT+TGG | 0.272591 | 4.2:-75606535 | MS.gene82211:CDS |
GGACGTGTATGGAGAACTTT+TGG | 0.278484 | 4.2:-75605651 | MS.gene82211:CDS |
TCAAGTGAAACTTCCTATTC+TGG | 0.278901 | 4.2:-75606754 | MS.gene82211:CDS |
TTCAAGAAAGTGAATTGTTT+TGG | 0.283494 | 4.2:+75603698 | None:intergenic |
GAGGCCTTGCTATACGTATC+TGG | 0.288912 | 4.2:+75608113 | None:intergenic |
ATTACTTCAGCACATGCTTT+TGG | 0.292122 | 4.2:+75607785 | None:intergenic |
CCAGCAGAGGGTAAGACTTC+TGG | 0.293216 | 4.2:+75608430 | None:intergenic |
CCTATATTAAGTGGTTATTC+TGG | 0.299020 | 4.2:-75606715 | MS.gene82211:CDS |
CAAACCTCACAATGTTGATT+TGG | 0.320944 | 4.2:-75608476 | MS.gene82211:CDS |
ATCAGTTGCTTCCGCGATAT+TGG | 0.327434 | 4.2:-75608069 | MS.gene82211:CDS |
ATTCAGGAGCCTCCTGTGTT+TGG | 0.329853 | 4.2:-75605933 | MS.gene82211:intron |
CAACTGCAAGCTGGCGATAC+TGG | 0.336996 | 4.2:-75607500 | MS.gene82211:intron |
TCTTGCCCACTATTCTCTTC+AGG | 0.340208 | 4.2:+75603727 | None:intergenic |
AGAGTTGGCCTAGGAGGTTT+AGG | 0.341758 | 4.2:+75608172 | None:intergenic |
TGCCCTTCCCACTTGGTGGC+TGG | 0.342375 | 4.2:+75604271 | None:intergenic |
ACAACACTTGGCTTAACTTC+TGG | 0.343319 | 4.2:+75606421 | None:intergenic |
CCCTGAGGGGAAACTTATAA+TGG | 0.343393 | 4.2:-75606918 | MS.gene82211:CDS |
CACTGGAGCTGAAACTTACT+TGG | 0.350730 | 4.2:-75606474 | MS.gene82211:CDS |
AATGAAAAGCCTAATGAATC+TGG | 0.351647 | 4.2:-75608616 | MS.gene82211:CDS |
ACTTTCTAGAGAGCGCATTT+AGG | 0.352085 | 4.2:+75606656 | None:intergenic |
TCAAGAGTTGCAGCAAATAT+CGG | 0.354064 | 4.2:-75608032 | MS.gene82211:CDS |
CGACATTTAACTCCAGTTGA+TGG | 0.354939 | 4.2:-75604081 | MS.gene82211:CDS |
TTTGCTGTTCCAGATTCATT+AGG | 0.360782 | 4.2:+75608607 | None:intergenic |
TTGTCTTCCCTCACTCTCAT+TGG | 0.362735 | 4.2:+75603798 | None:intergenic |
ATGTGAGGGGTATGCAAGTT+GGG | 0.375012 | 4.2:-75608534 | MS.gene82211:CDS |
TTACTTGAATCTAATTCATT+TGG | 0.378172 | 4.2:+75604036 | None:intergenic |
AGGACATTATGAAAGGGATT+TGG | 0.378577 | 4.2:+75608265 | None:intergenic |
TTAGCAAATGCTGCGGTACT+TGG | 0.380392 | 4.2:-75604384 | MS.gene82211:CDS |
GTCTACTTCTGATTCATCCT+TGG | 0.381182 | 4.2:+75604113 | None:intergenic |
AGGCCCTCAGGTTGAGAGAT+AGG | 0.381204 | 4.2:+75607641 | None:intergenic |
ATTACCTGTGCAAGTACTTC+AGG | 0.390989 | 4.2:-75609136 | MS.gene82211:CDS |
ATATTTGTGGTACGATCTAC+TGG | 0.393389 | 4.2:-75605900 | MS.gene82211:CDS |
TGGCCTTCTTCAGTCTCAAA+AGG | 0.396098 | 4.2:-75606695 | MS.gene82211:CDS |
GCTCTGGATCGTGAATCTTC+TGG | 0.398177 | 4.2:-75604417 | MS.gene82211:CDS |
ACTTACTTGGGAAGAGGCTC+AGG | 0.399619 | 4.2:-75606461 | MS.gene82211:CDS |
GTCATCATGCTCAGAGTGTT+TGG | 0.401168 | 4.2:+75603934 | None:intergenic |
GGAAACTTATAATGGGGTTC+AGG | 0.403096 | 4.2:-75606910 | MS.gene82211:CDS |
CAATTTCATCGTGATTCAAA+TGG | 0.411668 | 4.2:-75608382 | MS.gene82211:CDS |
TTCCTTCCCCGTCCTTCGGC+AGG | 0.411704 | 4.2:+75608091 | None:intergenic |
CCAGAATAACCACTTAATAT+AGG | 0.414414 | 4.2:+75606715 | None:intergenic |
TCATTCTCCGAACCATCAAC+TGG | 0.418732 | 4.2:+75604069 | None:intergenic |
AAGGCCTCCTGCCGAAGGAC+GGG | 0.419862 | 4.2:-75608098 | MS.gene82211:CDS |
AGAAAAGAACTCGAAATATT+GGG | 0.421447 | 4.2:-75606534 | MS.gene82211:CDS |
CCTGTGTTTCCTTCTAAGCC+TGG | 0.423109 | 4.2:+75608145 | None:intergenic |
TGAATTGAATCCAAGGGAAC+TGG | 0.424979 | 4.2:-75605514 | MS.gene82211:CDS |
TGCTTCTGCAGTTCATGAAC+AGG | 0.426089 | 4.2:-75603758 | MS.gene82211:CDS |
CTTGAATTGCCAACCGGATC+GGG | 0.426831 | 4.2:-75603974 | MS.gene82211:CDS |
ACTCTAACTCCAGGCTTAGA+AGG | 0.427238 | 4.2:-75608154 | MS.gene82211:CDS |
TCTCCATACACGTCCACTTA+GGG | 0.429073 | 4.2:+75605659 | None:intergenic |
TCTGGTTTGATTTCTCTAGA+AGG | 0.431001 | 4.2:+75608448 | None:intergenic |
AACTCTTGATCTGTAATTCT+GGG | 0.432750 | 4.2:+75608046 | None:intergenic |
GGCAAGCCAGAGGCCAGCTC+TGG | 0.433133 | 4.2:-75604433 | MS.gene82211:CDS |
AATGTCACCTCCACTTCTAT+TGG | 0.433907 | 4.2:-75608218 | MS.gene82211:CDS |
GCTTGCATGTCTTCCCGATC+CGG | 0.434187 | 4.2:+75603961 | None:intergenic |
ATGTTCCATGCAAAAGAATC+TGG | 0.435693 | 4.2:-75609347 | MS.gene82211:CDS |
AAGCATCAGCCACTTGGTCT+TGG | 0.442263 | 4.2:+75604013 | None:intergenic |
ATTCTCATAAACACCAGAAT+AGG | 0.444115 | 4.2:+75606741 | None:intergenic |
TTCACTTGAATGAGAACCAT+TGG | 0.445941 | 4.2:+75606768 | None:intergenic |
TAATGTCCTTGTTGATGAAA+GGG | 0.448219 | 4.2:-75608251 | MS.gene82211:CDS |
CACGATCCAGAGCTGGCCTC+TGG | 0.448625 | 4.2:+75604427 | None:intergenic |
TTCTTCTCAGGAACCAGCAC+AGG | 0.450915 | 4.2:+75606553 | None:intergenic |
CCCATTATAAGTTTCCCCTC+AGG | 0.451841 | 4.2:+75606917 | None:intergenic |
TGCTGGTCGAATTGGTCGCT+TGG | 0.454425 | 4.2:-75607813 | MS.gene82211:CDS |
AATGTGAGGGGTATGCAAGT+TGG | 0.455328 | 4.2:-75608535 | MS.gene82211:CDS |
TTTAACTCCAGTTGATGGTT+CGG | 0.456293 | 4.2:-75604076 | MS.gene82211:CDS |
AAAAGATTATCCAGTTCCCT+TGG | 0.457180 | 4.2:+75605504 | None:intergenic |
CAACAAGACACCCTCGTCAT+AGG | 0.457379 | 4.2:-75604320 | MS.gene82211:CDS |
CCAGAAGTCTTACCCTCTGC+TGG | 0.459866 | 4.2:-75608430 | MS.gene82211:CDS |
ATAATGTCCTTGTTGATGAA+AGG | 0.463710 | 4.2:-75608252 | MS.gene82211:CDS |
CCTTGCAAGCATCAGCCACT+TGG | 0.463936 | 4.2:+75604007 | None:intergenic |
GGCCTTCTTCAGTCTCAAAA+GGG | 0.464157 | 4.2:-75606694 | MS.gene82211:CDS |
TGGAAAGAAGAGTATATTTG+TGG | 0.465676 | 4.2:-75605913 | MS.gene82211:CDS |
TGTTGCATGAACGTTGTTTG+TGG | 0.466630 | 4.2:-75611275 | MS.gene82211:CDS |
CAGTTGCATAGACTGAATAC+AGG | 0.468777 | 4.2:+75607517 | None:intergenic |
CCTGAGGGGAAACTTATAAT+GGG | 0.471341 | 4.2:-75606917 | MS.gene82211:CDS |
GAGAATATACCTATATTAAG+TGG | 0.472374 | 4.2:-75606724 | MS.gene82211:CDS |
GTGATTCAAATGGTTCATCT+AGG | 0.472455 | 4.2:-75608372 | MS.gene82211:CDS |
AACAAATTCTGCTTCAGTAC+AGG | 0.472669 | 4.2:-75606882 | MS.gene82211:intron |
CTGATTCCTTCCCCGTCCTT+CGG | 0.474070 | 4.2:+75608087 | None:intergenic |
AGGCCTCCTGCCGAAGGACG+GGG | 0.474201 | 4.2:-75608097 | MS.gene82211:CDS |
TGTTTGCCCTTCCCACTTGG+TGG | 0.481303 | 4.2:+75604267 | None:intergenic |
GCAAGTGATGCTGGTCGAAT+TGG | 0.484028 | 4.2:-75607821 | MS.gene82211:CDS |
CAAGAGTTGCAGCAAATATC+GGG | 0.484696 | 4.2:-75608031 | MS.gene82211:CDS |
TTCCCAGCAGTGCATATCTC+TGG | 0.485291 | 4.2:-75608569 | MS.gene82211:CDS |
GGAGATGATGCAAGTGACTC+TGG | 0.485895 | 4.2:-75604363 | MS.gene82211:CDS |
CCAAGTGGCTGATGCTTGCA+AGG | 0.486061 | 4.2:-75604007 | MS.gene82211:CDS |
CCTCACAATGTTGATTTGGA+TGG | 0.486454 | 4.2:-75608472 | MS.gene82211:CDS |
AGACACCCTCGTCATAGGCC+TGG | 0.487047 | 4.2:-75604315 | MS.gene82211:CDS |
GACAGTCCTGAAGAGAATAG+TGG | 0.489705 | 4.2:-75603733 | MS.gene82211:CDS |
TAGCCAGAGATATGCACTGC+TGG | 0.491104 | 4.2:+75608566 | None:intergenic |
CGATTCGGTGGCGGAAAGGT+TGG | 0.493342 | 4.2:-75611241 | MS.gene82211:CDS |
TATTGATAGCGAGGATGCAC+TGG | 0.493835 | 4.2:-75606491 | MS.gene82211:CDS |
GTGGAACCTCTACGTCGATT+CGG | 0.494921 | 4.2:-75611256 | MS.gene82211:CDS |
TCTAAGCCTGGAGTTAGAGT+TGG | 0.495026 | 4.2:+75608157 | None:intergenic |
TTTGGCCAAATAATAATAGC+AGG | 0.500753 | 4.2:-75607565 | MS.gene82211:CDS |
ATCAACAAGGACATTATGAA+AGG | 0.502025 | 4.2:+75608258 | None:intergenic |
GAGACATACCTGAAGCAAAA+TGG | 0.503082 | 4.2:-75603883 | MS.gene82211:CDS |
CTTCCCCGTCCTTCGGCAGG+AGG | 0.504076 | 4.2:+75608094 | None:intergenic |
AAAATGACAGGATGAGGTAC+TGG | 0.505312 | 4.2:-75608501 | MS.gene82211:CDS |
GGCTAACCAATTAAATGTGA+GGG | 0.506229 | 4.2:-75608548 | MS.gene82211:CDS |
TCACTTGAATGAGAACCATT+GGG | 0.509159 | 4.2:+75606769 | None:intergenic |
CCTGGAGTTAGAGTTGGCCT+AGG | 0.510835 | 4.2:+75608163 | None:intergenic |
GTTGTCTTTACCACCTGTGC+TGG | 0.513012 | 4.2:-75606566 | MS.gene82211:CDS |
CAAGGCCTCCTGCCGAAGGA+CGG | 0.513301 | 4.2:-75608099 | MS.gene82211:CDS |
TGCTTCAGGTATGTCTCCAA+CGG | 0.513673 | 4.2:+75603889 | None:intergenic |
GCTTCAGGTATGTCTCCAAC+GGG | 0.514701 | 4.2:+75603890 | None:intergenic |
CAGTCTATGCAACTGCAAGC+TGG | 0.514895 | 4.2:-75607509 | MS.gene82211:CDS |
TGCAGTAACATTTAGCCGTA+TGG | 0.517779 | 4.2:-75606942 | MS.gene82211:intron |
GGAATTATGCAGAAAATGAC+AGG | 0.518137 | 4.2:-75608513 | MS.gene82211:CDS |
ACTTGAATTGCCAACCGGAT+CGG | 0.518323 | 4.2:-75603975 | MS.gene82211:CDS |
AAATTCAGCTTCAAATGTGC+AGG | 0.519112 | 4.2:-75603830 | MS.gene82211:CDS |
TTCTAGAGAGCGCATTTAGG+TGG | 0.520190 | 4.2:+75606659 | None:intergenic |
CCCTCCTATCTCTCAACCTG+AGG | 0.521917 | 4.2:-75607645 | MS.gene82211:CDS |
TAAATGCGCTCTCTAGAAAG+TGG | 0.523105 | 4.2:-75606654 | MS.gene82211:CDS |
TTGTGTTTGCCCTTCCCACT+TGG | 0.523559 | 4.2:+75604264 | None:intergenic |
ATTAGACTTGAATTGCCAAC+CGG | 0.524003 | 4.2:-75603980 | MS.gene82211:CDS |
GCAAGATATATATGAATCAC+TGG | 0.525449 | 4.2:-75608326 | MS.gene82211:CDS |
CCGATCTATGTGATAAGTGC+GGG | 0.529734 | 4.2:-75611196 | MS.gene82211:intron |
ATGTAGAAATGCCTGAAAGC+AGG | 0.533071 | 4.2:-75606600 | MS.gene82211:CDS |
AGGCCTTGCTATACGTATCT+GGG | 0.533919 | 4.2:+75608114 | None:intergenic |
TCCTCGATCATGACAACACT+TGG | 0.535986 | 4.2:+75606409 | None:intergenic |
GAGTGAGGGAAGACAAAATG+AGG | 0.539623 | 4.2:-75603791 | MS.gene82211:CDS |
ACATAGATCGGCAAATTCAC+CGG | 0.541892 | 4.2:+75611208 | None:intergenic |
TCAACAAGGACATTATGAAA+GGG | 0.542098 | 4.2:+75608259 | None:intergenic |
ATGCAGAAAATGACAGGATG+AGG | 0.542862 | 4.2:-75608507 | MS.gene82211:CDS |
ATGCTTAGTGCAAGTGATGC+TGG | 0.543355 | 4.2:-75607830 | MS.gene82211:CDS |
TTCTCCATACACGTCCACTT+AGG | 0.543699 | 4.2:+75605658 | None:intergenic |
CAGTTGGTGCTGACATGGAT+TGG | 0.544785 | 4.2:-75606627 | MS.gene82211:CDS |
GAAGATTCACGATCCAGAGC+TGG | 0.546355 | 4.2:+75604420 | None:intergenic |
CTCACAATGAATTGAATCCA+AGG | 0.547000 | 4.2:-75605521 | MS.gene82211:CDS |
ATACGCAAAGGAAGGCCCTC+AGG | 0.550975 | 4.2:+75607629 | None:intergenic |
ATTTGGCAAAGGAGCGGTAA+GGG | 0.556170 | 4.2:+75608282 | None:intergenic |
AGCACCCAGGCCTATGACGA+GGG | 0.556180 | 4.2:+75604310 | None:intergenic |
GACACCCTCGTCATAGGCCT+GGG | 0.556520 | 4.2:-75604314 | MS.gene82211:CDS |
CCATTATAAGTTTCCCCTCA+GGG | 0.557442 | 4.2:+75606918 | None:intergenic |
GGAGTTAGAGTTGGCCTAGG+AGG | 0.557806 | 4.2:+75608166 | None:intergenic |
AAGTCCTGAAGTACTTGCAC+AGG | 0.558364 | 4.2:+75609132 | None:intergenic |
ATGATGCAAGTGACTCTGGC+AGG | 0.558412 | 4.2:-75604359 | MS.gene82211:CDS |
GAACTCAGTTGGTGCTGACA+TGG | 0.559385 | 4.2:-75606632 | MS.gene82211:CDS |
AAGATGTGAAAGGAAAAGAA+TGG | 0.562266 | 4.2:-75607604 | MS.gene82211:CDS |
TTTCCGTCTAATATGCCCAA+TGG | 0.563491 | 4.2:-75606784 | MS.gene82211:CDS |
GATCGGGAAGACATGCAAGC+TGG | 0.563741 | 4.2:-75603958 | MS.gene82211:CDS |
GTTTCCCCTCAGGGTCCATA+CGG | 0.563865 | 4.2:+75606927 | None:intergenic |
CTTGGCTTAACTTCTGGAGG+TGG | 0.565044 | 4.2:+75606427 | None:intergenic |
CAAGAAACAAAGACAAGCAT+CGG | 0.565134 | 4.2:-75604454 | MS.gene82211:CDS |
CCCGCACTTATCACATAGAT+CGG | 0.565675 | 4.2:+75611196 | None:intergenic |
GCTGAAACTTACTTGGGAAG+AGG | 0.565759 | 4.2:-75606467 | MS.gene82211:CDS |
TATCCAGCCACCAAGTGGGA+AGG | 0.566881 | 4.2:-75604274 | MS.gene82211:CDS |
AAAGGTTGGATTCTTCGATC+CGG | 0.567319 | 4.2:-75611227 | MS.gene82211:CDS |
ATCCAGCCACCAAGTGGGAA+GGG | 0.569945 | 4.2:-75604273 | MS.gene82211:CDS |
TTCTCAGGAACCAGCACAGG+TGG | 0.570575 | 4.2:+75606556 | None:intergenic |
CCTCCTATCTCTCAACCTGA+GGG | 0.572708 | 4.2:-75607644 | MS.gene82211:CDS |
ACGTCGATTCGGTGGCGGAA+AGG | 0.573751 | 4.2:-75611245 | MS.gene82211:CDS |
TCAAATGGTTCATCTAGGAC+TGG | 0.575345 | 4.2:-75608367 | MS.gene82211:CDS |
ACTTATAATGGGGTTCAGGA+AGG | 0.575522 | 4.2:-75606906 | MS.gene82211:CDS |
CCTCTACGTCGATTCGGTGG+CGG | 0.575763 | 4.2:-75611250 | MS.gene82211:CDS |
AGCCAGAGATATGCACTGCT+GGG | 0.576349 | 4.2:+75608567 | None:intergenic |
GATTTGGCAAAGGAGCGGTA+AGG | 0.576714 | 4.2:+75608281 | None:intergenic |
TGTCTTGTTGTGGTCAACAC+TGG | 0.577354 | 4.2:+75604333 | None:intergenic |
TCTAGAAAGTGGAACTCAGT+TGG | 0.578317 | 4.2:-75606643 | MS.gene82211:CDS |
TCTAGAGAGCGCATTTAGGT+GGG | 0.579194 | 4.2:+75606660 | None:intergenic |
TCCATGCAAAAGAATCTGGT+TGG | 0.579415 | 4.2:-75609343 | MS.gene82211:CDS |
TTCAAAGAGTGGCACAATGG+TGG | 0.580676 | 4.2:+75607856 | None:intergenic |
GCATGTCTTCCCGATCCGGT+TGG | 0.581547 | 4.2:+75603965 | None:intergenic |
CCTCAGGTTGAGAGATAGGA+GGG | 0.582109 | 4.2:+75607645 | None:intergenic |
GATCTAGACGCCAATAGAAG+TGG | 0.585121 | 4.2:+75608208 | None:intergenic |
TATCTGCAGCGTCTCCATTG+TGG | 0.587990 | 4.2:-75609214 | MS.gene82211:intron |
CCTAGGCCAACTCTAACTCC+AGG | 0.589422 | 4.2:-75608163 | MS.gene82211:CDS |
ATAGCAAGGCCTCCTGCCGA+AGG | 0.591462 | 4.2:-75608103 | MS.gene82211:CDS |
ATACTCTTCTTTCCAAACAC+AGG | 0.593392 | 4.2:+75605921 | None:intergenic |
GTCTGTATCCAGCCACCAAG+TGG | 0.593579 | 4.2:-75604279 | MS.gene82211:CDS |
ATGACGAGGGTGTCTTGTTG+TGG | 0.595378 | 4.2:+75604323 | None:intergenic |
CAGACATTACACGTGCATGT+AGG | 0.595381 | 4.2:+75604240 | None:intergenic |
ACACTTGGCTTAACTTCTGG+AGG | 0.596735 | 4.2:+75606424 | None:intergenic |
TTATGAAAGGGATTTGGCAA+AGG | 0.597001 | 4.2:+75608271 | None:intergenic |
CCCTCAGGTTGAGAGATAGG+AGG | 0.598922 | 4.2:+75607644 | None:intergenic |
ACAGTCCTGAAGAGAATAGT+GGG | 0.601508 | 4.2:-75603732 | MS.gene82211:CDS |
TTCACATCTTGGATACGCAA+AGG | 0.602051 | 4.2:+75607617 | None:intergenic |
GAACCATTGGGCATATTAGA+CGG | 0.606117 | 4.2:+75606781 | None:intergenic |
CATCTTGGATACGCAAAGGA+AGG | 0.606572 | 4.2:+75607621 | None:intergenic |
CTCTTCTTTCCAAACACAGG+AGG | 0.606920 | 4.2:+75605924 | None:intergenic |
CCATCCAAATCAACATTGTG+AGG | 0.607409 | 4.2:+75608472 | None:intergenic |
TGGCTAACCAATTAAATGTG+AGG | 0.608102 | 4.2:-75608549 | MS.gene82211:CDS |
TGAAGAAGCAAATCTCCCGT+TGG | 0.612037 | 4.2:-75603905 | MS.gene82211:CDS |
GAGGTTGCTTATTGATAGCG+AGG | 0.613509 | 4.2:-75606500 | MS.gene82211:CDS |
CTCCTGCCGAAGGACGGGGA+AGG | 0.614694 | 4.2:-75608093 | MS.gene82211:CDS |
CTCCATACACGTCCACTTAG+GGG | 0.615994 | 4.2:+75605660 | None:intergenic |
TTGCGTATCCAAGATGTGAA+AGG | 0.616182 | 4.2:-75607614 | MS.gene82211:CDS |
TCCATACACGTCCACTTAGG+GGG | 0.618210 | 4.2:+75605661 | None:intergenic |
AGAGTGTACTTCATGTGGCA+AGG | 0.623087 | 4.2:-75609318 | MS.gene82211:intron |
GAGCACCCAGGCCTATGACG+AGG | 0.624242 | 4.2:+75604309 | None:intergenic |
TTTGTTCCCTTTCATCAACA+AGG | 0.624287 | 4.2:+75608245 | None:intergenic |
GCTTCCAAATTCTCCAGCAG+AGG | 0.626276 | 4.2:+75608417 | None:intergenic |
CTTCCAAATTCTCCAGCAGA+GGG | 0.626325 | 4.2:+75608418 | None:intergenic |
ACAGACAACCAATGAGAGTG+AGG | 0.631032 | 4.2:-75603806 | MS.gene82211:CDS |
TTCAAGTAACCAAGACCAAG+TGG | 0.631930 | 4.2:-75604022 | MS.gene82211:CDS |
TGGTTCATCTAGGACTGGCA+AGG | 0.632497 | 4.2:-75608362 | MS.gene82211:CDS |
TCACAATGAATTGAATCCAA+GGG | 0.636984 | 4.2:-75605520 | MS.gene82211:CDS |
TGGCTGGATACAGACAATGC+AGG | 0.639598 | 4.2:+75604287 | None:intergenic |
GCCGATCTATGTGATAAGTG+CGG | 0.642160 | 4.2:-75611197 | MS.gene82211:CDS |
GACAAGCATCGGCAAGCCAG+AGG | 0.642701 | 4.2:-75604443 | MS.gene82211:CDS |
CTAGACGCCAATAGAAGTGG+AGG | 0.644014 | 4.2:+75608211 | None:intergenic |
CAGCTTGAAATACTTGACAC+TGG | 0.646808 | 4.2:-75609172 | MS.gene82211:CDS |
TGGTTCGGAGAATGAAGCAA+GGG | 0.647391 | 4.2:-75604061 | MS.gene82211:CDS |
TTGAAGCAACACATCCACAA+TGG | 0.648024 | 4.2:+75609200 | None:intergenic |
GTAATTCTGGGCCAATATCG+CGG | 0.648517 | 4.2:+75608058 | None:intergenic |
TATTTGTGGTACGATCTACT+GGG | 0.648538 | 4.2:-75605899 | MS.gene82211:intron |
TCTGTATCCAGCCACCAAGT+GGG | 0.649632 | 4.2:-75604278 | MS.gene82211:CDS |
CCGCCACCGAATCGACGTAG+AGG | 0.651077 | 4.2:+75611250 | None:intergenic |
ATGGTTCGGAGAATGAAGCA+AGG | 0.651558 | 4.2:-75604062 | MS.gene82211:CDS |
GCCAAGTGTTGTCATGATCG+AGG | 0.651574 | 4.2:-75606410 | MS.gene82211:CDS |
AGTTGCATAGACTGAATACA+GGG | 0.651610 | 4.2:+75607518 | None:intergenic |
CAAGTGGCTGATGCTTGCAA+GGG | 0.654005 | 4.2:-75604006 | MS.gene82211:CDS |
ACTGGAGCTGAAACTTACTT+GGG | 0.656896 | 4.2:-75606473 | MS.gene82211:CDS |
TTTCCCAGATACGTATAGCA+AGG | 0.657040 | 4.2:-75608117 | MS.gene82211:CDS |
AACTGGAGTTAAATGTCGAG+AGG | 0.658373 | 4.2:+75604086 | None:intergenic |
CTTAGAAGGAAACACAGGCA+TGG | 0.658844 | 4.2:-75608140 | MS.gene82211:CDS |
GCTAACCAATTAAATGTGAG+GGG | 0.663001 | 4.2:-75608547 | MS.gene82211:CDS |
ACCACAGGATAAGTGAGCAG+TGG | 0.664291 | 4.2:-75605738 | MS.gene82211:intron |
GAACCTCTACGTCGATTCGG+TGG | 0.665625 | 4.2:-75611253 | MS.gene82211:CDS |
CTGAGGGGAAACTTATAATG+GGG | 0.667153 | 4.2:-75606916 | MS.gene82211:CDS |
TCAGCAATCATGGAGGACCA+AGG | 0.667770 | 4.2:-75604130 | MS.gene82211:CDS |
TCTGCATGACAGTTAAACGC+CGG | 0.670607 | 4.2:-75604221 | MS.gene82211:CDS |
TTTAGCCGTATGGACCCTGA+GGG | 0.672269 | 4.2:-75606932 | MS.gene82211:CDS |
AAAGGGATTTGGCAAAGGAG+CGG | 0.674141 | 4.2:+75608276 | None:intergenic |
CCAGGCTTAGAAGGAAACAC+AGG | 0.682919 | 4.2:-75608145 | MS.gene82211:CDS |
CAGACAACCAATGAGAGTGA+GGG | 0.686644 | 4.2:-75603805 | MS.gene82211:CDS |
ATTTAGCCGTATGGACCCTG+AGG | 0.687200 | 4.2:-75606933 | MS.gene82211:CDS |
CAGACAATGCAGGAGCACCC+AGG | 0.691613 | 4.2:+75604297 | None:intergenic |
TGATGCTTTAGCAAATGCTG+CGG | 0.695273 | 4.2:-75604391 | MS.gene82211:CDS |
TTGCATAGACTGAATACAGG+GGG | 0.707100 | 4.2:+75607520 | None:intergenic |
TGGAGAGAGTGTACTTCATG+TGG | 0.711681 | 4.2:-75609323 | MS.gene82211:CDS |
CTTGAAATACTTGACACTGG+TGG | 0.733966 | 4.2:-75609169 | MS.gene82211:CDS |
TTAGCCGTATGGACCCTGAG+GGG | 0.752430 | 4.2:-75606931 | MS.gene82211:CDS |
GTTGCATAGACTGAATACAG+GGG | 0.770443 | 4.2:+75607519 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.2 | gene | 75603699 | 75611309 | 75603699 | ID=MS.gene82211 |
chr4.2 | mRNA | 75603699 | 75611309 | 75603699 | ID=MS.gene82211.t1;Parent=MS.gene82211 |
chr4.2 | exon | 75611197 | 75611309 | 75611197 | ID=MS.gene82211.t1.exon1;Parent=MS.gene82211.t1 |
chr4.2 | CDS | 75611197 | 75611309 | 75611197 | ID=cds.MS.gene82211.t1;Parent=MS.gene82211.t1 |
chr4.2 | exon | 75609319 | 75609400 | 75609319 | ID=MS.gene82211.t1.exon2;Parent=MS.gene82211.t1 |
chr4.2 | CDS | 75609319 | 75609400 | 75609319 | ID=cds.MS.gene82211.t1;Parent=MS.gene82211.t1 |
chr4.2 | exon | 75609126 | 75609227 | 75609126 | ID=MS.gene82211.t1.exon3;Parent=MS.gene82211.t1 |
chr4.2 | CDS | 75609126 | 75609227 | 75609126 | ID=cds.MS.gene82211.t1;Parent=MS.gene82211.t1 |
chr4.2 | exon | 75608028 | 75608647 | 75608028 | ID=MS.gene82211.t1.exon4;Parent=MS.gene82211.t1 |
chr4.2 | CDS | 75608028 | 75608647 | 75608028 | ID=cds.MS.gene82211.t1;Parent=MS.gene82211.t1 |
chr4.2 | exon | 75607790 | 75607886 | 75607790 | ID=MS.gene82211.t1.exon5;Parent=MS.gene82211.t1 |
chr4.2 | CDS | 75607790 | 75607886 | 75607790 | ID=cds.MS.gene82211.t1;Parent=MS.gene82211.t1 |
chr4.2 | exon | 75607501 | 75607675 | 75607501 | ID=MS.gene82211.t1.exon6;Parent=MS.gene82211.t1 |
chr4.2 | CDS | 75607501 | 75607675 | 75607501 | ID=cds.MS.gene82211.t1;Parent=MS.gene82211.t1 |
chr4.2 | exon | 75606883 | 75606959 | 75606883 | ID=MS.gene82211.t1.exon7;Parent=MS.gene82211.t1 |
chr4.2 | CDS | 75606883 | 75606959 | 75606883 | ID=cds.MS.gene82211.t1;Parent=MS.gene82211.t1 |
chr4.2 | exon | 75606387 | 75606812 | 75606387 | ID=MS.gene82211.t1.exon8;Parent=MS.gene82211.t1 |
chr4.2 | CDS | 75606387 | 75606812 | 75606387 | ID=cds.MS.gene82211.t1;Parent=MS.gene82211.t1 |
chr4.2 | exon | 75605900 | 75605949 | 75605900 | ID=MS.gene82211.t1.exon9;Parent=MS.gene82211.t1 |
chr4.2 | CDS | 75605900 | 75605949 | 75605900 | ID=cds.MS.gene82211.t1;Parent=MS.gene82211.t1 |
chr4.2 | exon | 75605640 | 75605753 | 75605640 | ID=MS.gene82211.t1.exon10;Parent=MS.gene82211.t1 |
chr4.2 | CDS | 75605640 | 75605753 | 75605640 | ID=cds.MS.gene82211.t1;Parent=MS.gene82211.t1 |
chr4.2 | exon | 75605490 | 75605557 | 75605490 | ID=MS.gene82211.t1.exon11;Parent=MS.gene82211.t1 |
chr4.2 | CDS | 75605490 | 75605557 | 75605490 | ID=cds.MS.gene82211.t1;Parent=MS.gene82211.t1 |
chr4.2 | exon | 75603699 | 75604480 | 75603699 | ID=MS.gene82211.t1.exon12;Parent=MS.gene82211.t1 |
chr4.2 | CDS | 75603699 | 75604480 | 75603699 | ID=cds.MS.gene82211.t1;Parent=MS.gene82211.t1 |
Gene Sequence |
Protein sequence |