Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82549.t1 | XP_003600919.1 | 93.8 | 517 | 32 | 0 | 1 | 517 | 1 | 517 | 8.10E-284 | 985.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82549.t1 | Q9XEE6 | 48.4 | 566 | 221 | 15 | 10 | 515 | 33 | 587 | 7.0e-127 | 455.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82549.t1 | G7JBT0 | 93.8 | 517 | 32 | 0 | 1 | 517 | 1 | 517 | 5.8e-284 | 985.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene82549.t1 | TF | C3H |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051837 | MS.gene82549 | 0.850163 | 2.03E-60 | -1.69E-46 |
| MS.gene052091 | MS.gene82549 | 0.817811 | 2.72E-52 | -1.69E-46 |
| MS.gene053932 | MS.gene82549 | 0.80785 | 4.13E-50 | -1.69E-46 |
| MS.gene055549 | MS.gene82549 | 0.830938 | 2.22E-55 | -1.69E-46 |
| MS.gene055550 | MS.gene82549 | 0.83638 | 9.68E-57 | -1.69E-46 |
| MS.gene055551 | MS.gene82549 | 0.831167 | 1.95E-55 | -1.69E-46 |
| MS.gene057093 | MS.gene82549 | 0.823718 | 1.19E-53 | -1.69E-46 |
| MS.gene057239 | MS.gene82549 | 0.842592 | 2.35E-58 | -1.69E-46 |
| MS.gene06061 | MS.gene82549 | 0.827963 | 1.17E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82549.t1 | MTR_3g070880 | 93.810 | 517 | 32 | 0 | 1 | 517 | 1 | 517 | 0.0 | 1019 |
| MS.gene82549.t1 | MTR_5g082830 | 61.250 | 400 | 90 | 9 | 1 | 336 | 16 | 414 | 6.19e-159 | 468 |
| MS.gene82549.t1 | MTR_5g082830 | 51.452 | 241 | 89 | 9 | 298 | 515 | 439 | 674 | 3.88e-51 | 185 |
| MS.gene82549.t1 | MTR_1g075890 | 43.009 | 565 | 199 | 18 | 2 | 463 | 25 | 569 | 1.05e-126 | 384 |
| MS.gene82549.t1 | MTR_5g071070 | 44.191 | 439 | 159 | 7 | 8 | 369 | 33 | 462 | 2.72e-119 | 367 |
| MS.gene82549.t1 | MTR_5g071070 | 33.796 | 216 | 118 | 9 | 322 | 515 | 483 | 695 | 7.41e-16 | 81.3 |
| MS.gene82549.t1 | MTR_7g092070 | 35.205 | 659 | 234 | 17 | 8 | 492 | 45 | 684 | 9.05e-110 | 343 |
| MS.gene82549.t1 | MTR_5g071070 | 43.814 | 388 | 134 | 9 | 58 | 369 | 1 | 380 | 1.65e-98 | 310 |
| MS.gene82549.t1 | MTR_5g071070 | 33.796 | 216 | 118 | 9 | 322 | 515 | 401 | 613 | 8.45e-16 | 80.9 |
| MS.gene82549.t1 | MTR_3g464260 | 37.017 | 543 | 192 | 17 | 13 | 485 | 28 | 490 | 6.91e-89 | 283 |
| MS.gene82549.t1 | MTR_3g029590 | 32.239 | 670 | 247 | 22 | 8 | 492 | 43 | 690 | 1.82e-82 | 271 |
| MS.gene82549.t1 | MTR_3g435590 | 42.547 | 322 | 128 | 4 | 8 | 274 | 30 | 349 | 1.66e-81 | 261 |
| MS.gene82549.t1 | MTR_3g464280 | 36.122 | 526 | 178 | 17 | 26 | 464 | 33 | 487 | 4.17e-76 | 248 |
| MS.gene82549.t1 | MTR_1g050438 | 41.265 | 332 | 135 | 7 | 9 | 280 | 14 | 345 | 7.33e-75 | 248 |
| MS.gene82549.t1 | MTR_0728s0020 | 41.265 | 332 | 135 | 7 | 9 | 280 | 30 | 361 | 2.24e-74 | 247 |
| MS.gene82549.t1 | MTR_3g435680 | 47.393 | 211 | 83 | 3 | 103 | 289 | 67 | 273 | 2.01e-61 | 207 |
| MS.gene82549.t1 | MTR_3g464270 | 36.898 | 374 | 159 | 16 | 162 | 483 | 8 | 356 | 7.06e-50 | 175 |
| MS.gene82549.t1 | MTR_3g103960 | 53.896 | 154 | 57 | 3 | 153 | 305 | 43 | 183 | 3.08e-48 | 168 |
| MS.gene82549.t1 | MTR_8g102100 | 58.197 | 122 | 51 | 0 | 159 | 280 | 77 | 198 | 2.11e-47 | 169 |
| MS.gene82549.t1 | MTR_6g090380 | 62.037 | 108 | 41 | 0 | 158 | 265 | 98 | 205 | 1.19e-46 | 167 |
| MS.gene82549.t1 | MTR_3g464290 | 33.412 | 422 | 202 | 15 | 122 | 485 | 51 | 451 | 1.31e-44 | 164 |
| MS.gene82549.t1 | MTR_2g090605 | 57.658 | 111 | 47 | 0 | 163 | 273 | 77 | 187 | 4.81e-42 | 155 |
| MS.gene82549.t1 | MTR_4g078660 | 57.944 | 107 | 45 | 0 | 159 | 265 | 56 | 162 | 9.40e-42 | 152 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82549.t1 | AT2G40140 | 48.084 | 574 | 227 | 15 | 2 | 515 | 25 | 587 | 7.73e-157 | 460 |
| MS.gene82549.t1 | AT2G40140 | 48.084 | 574 | 227 | 15 | 2 | 515 | 25 | 587 | 7.73e-157 | 460 |
| MS.gene82549.t1 | AT3G55980 | 48.336 | 571 | 201 | 21 | 10 | 515 | 30 | 571 | 1.09e-156 | 459 |
| MS.gene82549.t1 | AT3G55980 | 48.336 | 571 | 201 | 21 | 10 | 515 | 97 | 638 | 1.29e-155 | 458 |
| MS.gene82549.t1 | AT5G58620 | 44.082 | 583 | 211 | 16 | 8 | 485 | 12 | 584 | 1.45e-142 | 424 |
| MS.gene82549.t1 | AT2G41900 | 42.694 | 438 | 155 | 12 | 8 | 352 | 46 | 480 | 5.25e-103 | 325 |
| MS.gene82549.t1 | AT5G12850 | 45.574 | 305 | 121 | 10 | 139 | 409 | 235 | 528 | 3.39e-74 | 248 |
| MS.gene82549.t1 | AT5G12850 | 42.982 | 114 | 64 | 1 | 8 | 121 | 40 | 152 | 2.28e-24 | 107 |
| MS.gene82549.t1 | AT4G29190 | 51.515 | 165 | 68 | 3 | 148 | 300 | 64 | 228 | 1.18e-48 | 172 |
| MS.gene82549.t1 | AT2G19810 | 60.000 | 120 | 48 | 0 | 148 | 267 | 63 | 182 | 2.25e-48 | 171 |
| MS.gene82549.t1 | AT2G25900 | 61.607 | 112 | 43 | 0 | 159 | 270 | 86 | 197 | 4.52e-48 | 169 |
| MS.gene82549.t1 | AT2G25900 | 61.607 | 112 | 43 | 0 | 159 | 270 | 86 | 197 | 4.52e-48 | 169 |
| MS.gene82549.t1 | AT5G07500 | 55.285 | 123 | 55 | 0 | 143 | 265 | 32 | 154 | 1.97e-47 | 165 |
| MS.gene82549.t1 | AT1G03790 | 51.748 | 143 | 59 | 3 | 139 | 277 | 64 | 200 | 1.47e-41 | 154 |
| MS.gene82549.t1 | AT5G44260 | 51.128 | 133 | 58 | 2 | 139 | 270 | 42 | 168 | 3.74e-39 | 147 |
Find 106 sgRNAs with CRISPR-Local
Find 117 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGAACATGGTTCCTGTTT+TGG | 0.154085 | 3.1:-58164137 | None:intergenic |
| GACACGAAGCCAAAGCTTTA+TGG | 0.159998 | 3.1:+58164278 | MS.gene82549:CDS |
| TCTGAGAATTCTGAGATATT+TGG | 0.200828 | 3.1:+58164525 | MS.gene82549:CDS |
| GAGTTTAACAATCTCAAATT+TGG | 0.214609 | 3.1:-58163368 | None:intergenic |
| CTTATGATTGCTTCTTTGTT+TGG | 0.252453 | 3.1:+58163232 | MS.gene82549:CDS |
| GAAGTTGAGAAGAAAGATTC+AGG | 0.258178 | 3.1:+58163472 | MS.gene82549:CDS |
| CTTCTTTGTTTGGAAGCATT+AGG | 0.280824 | 3.1:+58163242 | MS.gene82549:CDS |
| CAGATTGGGTTTCAAATGAT+TGG | 0.282097 | 3.1:+58164367 | MS.gene82549:CDS |
| CAGCTATAAGGATACTTCTT+TGG | 0.295350 | 3.1:-58163658 | None:intergenic |
| CACATGTAATTTCCATTCTT+AGG | 0.300468 | 3.1:-58163961 | None:intergenic |
| ATTCAAGTAAAGTTGAGTTT+TGG | 0.301880 | 3.1:-58163078 | None:intergenic |
| TTCTTTGTTTGGAAGCATTA+GGG | 0.311661 | 3.1:+58163243 | MS.gene82549:CDS |
| AAAACACCATTGTTTATATC+AGG | 0.317396 | 3.1:-58163517 | None:intergenic |
| CTCATAGATTGGAATTGATT+AGG | 0.322495 | 3.1:-58164099 | None:intergenic |
| GGTGTAGAAACATTTGAAAT+TGG | 0.340801 | 3.1:-58163907 | None:intergenic |
| ACTCACATGCATCTTTCTTC+TGG | 0.348032 | 3.1:-58163714 | None:intergenic |
| GCATTACATTGTGCTGTTGC+TGG | 0.358959 | 3.1:+58163334 | MS.gene82549:CDS |
| TCGATTCGGAAGCACCGATA+TGG | 0.364885 | 3.1:-58164320 | None:intergenic |
| ATTTGAGATTGTTAAACTCT+TGG | 0.381581 | 3.1:+58163372 | MS.gene82549:CDS |
| AGGCCTTTGTATGCTTCTAC+TGG | 0.382036 | 3.1:+58163856 | MS.gene82549:CDS |
| GAACTCTGGTCTGTCAGATT+GGG | 0.382476 | 3.1:+58164353 | MS.gene82549:CDS |
| ATGAGAAAATCATCAGCATA+TGG | 0.391943 | 3.1:+58164195 | MS.gene82549:CDS |
| ATATCAATGAGGCAGGGTTT+TGG | 0.392554 | 3.1:+58163158 | MS.gene82549:CDS |
| GCATGTCCCTTTGCGAAACT+CGG | 0.397119 | 3.1:-58163692 | None:intergenic |
| GCATTGAAATACCATGTAAC+AGG | 0.408752 | 3.1:-58164065 | None:intergenic |
| GTTAAACTCTTGGTTGATGC+TGG | 0.410340 | 3.1:+58163382 | MS.gene82549:CDS |
| GCATGTTGAGGCCGTGCAAC+GGG | 0.411246 | 3.1:-58164456 | None:intergenic |
| CAAACAAAGAAGCAATCATA+AGG | 0.422681 | 3.1:-58163231 | None:intergenic |
| CAAAAGGGAAGTAGAAGAAA+AGG | 0.424560 | 3.1:+58163129 | MS.gene82549:CDS |
| ATGATATTGAAGCTTTCAAA+AGG | 0.428092 | 3.1:+58163113 | MS.gene82549:CDS |
| TGAACTCTGGTCTGTCAGAT+TGG | 0.432028 | 3.1:+58164352 | MS.gene82549:CDS |
| TGGAATTGATTAGGAGTTGA+AGG | 0.434731 | 3.1:-58164090 | None:intergenic |
| GCTGAAACCTACTCATAGAT+TGG | 0.445115 | 3.1:-58164110 | None:intergenic |
| AAACAAAGAAGCAATCATAA+GGG | 0.448581 | 3.1:-58163230 | None:intergenic |
| GGGCACGGAACACAGCTATA+AGG | 0.448836 | 3.1:-58163670 | None:intergenic |
| ACGGCCTCAACATGCTGAAC+CGG | 0.452409 | 3.1:+58164464 | MS.gene82549:CDS |
| CACCGCGATCCATAAAGCTT+TGG | 0.452463 | 3.1:-58164287 | None:intergenic |
| TTCTCCCCTGGATGAACAAA+TGG | 0.453606 | 3.1:-58163619 | None:intergenic |
| CTGCAGCAGTGATGAATTCA+AGG | 0.455073 | 3.1:+58164241 | MS.gene82549:CDS |
| CATGTCCCTTTGCGAAACTC+GGG | 0.458325 | 3.1:-58163691 | None:intergenic |
| AATCTCATCTTTACAAAGCC+TGG | 0.458636 | 3.1:-58163785 | None:intergenic |
| GGCTATGATATCAATGAGGC+AGG | 0.459884 | 3.1:+58163151 | MS.gene82549:CDS |
| GGTTTCAGCAGAACCAAAAC+AGG | 0.464964 | 3.1:+58164124 | MS.gene82549:CDS |
| GGCTTTGTAAAGATGAGATT+AGG | 0.465521 | 3.1:+58163788 | MS.gene82549:CDS |
| GTTTGATTCATCAGCTGCTA+TGG | 0.471231 | 3.1:+58164218 | MS.gene82549:CDS |
| GAGTGTCCATTTGTTCATCC+AGG | 0.473709 | 3.1:+58163613 | MS.gene82549:CDS |
| GCTGATTCATCTCCTAAGAA+TGG | 0.478855 | 3.1:+58163949 | MS.gene82549:CDS |
| AGATTGGGTTTCAAATGATT+GGG | 0.479244 | 3.1:+58164368 | MS.gene82549:CDS |
| GTTCATCCTACTGTTCGATT+CGG | 0.479491 | 3.1:-58164334 | None:intergenic |
| TTCATCCAGGGGAGAATGCT+AGG | 0.479775 | 3.1:+58163626 | MS.gene82549:CDS |
| GATGAAACAATGCTGTTGAA+TGG | 0.488330 | 3.1:-58164168 | None:intergenic |
| AAGGGATTTGTATCAAGAAA+TGG | 0.494896 | 3.1:+58164041 | MS.gene82549:CDS |
| CAAGGGGTTACACTCATGAT+TGG | 0.497804 | 3.1:+58163587 | MS.gene82549:CDS |
| AGCATGTTGAGGCCGTGCAA+CGG | 0.498076 | 3.1:-58164457 | None:intergenic |
| GAATGAACCCACGAGACATC+CGG | 0.501123 | 3.1:-58164483 | None:intergenic |
| TGATATTGAAGCTTTCAAAA+GGG | 0.524486 | 3.1:+58163114 | MS.gene82549:CDS |
| CAAGAAATGGACCTGTTACA+TGG | 0.528005 | 3.1:+58164054 | MS.gene82549:CDS |
| AAAAGGGAAGTAGAAGAAAA+GGG | 0.532219 | 3.1:+58163130 | MS.gene82549:CDS |
| CTTCTCCTAGCATTCTCCCC+TGG | 0.532406 | 3.1:-58163631 | None:intergenic |
| ATTGGTAAAGATTCTTGTGA+AGG | 0.532807 | 3.1:-58163889 | None:intergenic |
| CTGCTGCTTCGCCCGTTGCA+CGG | 0.534070 | 3.1:+58164445 | MS.gene82549:CDS |
| TACACCACCTATGTCTCCAT+TGG | 0.535040 | 3.1:+58163924 | MS.gene82549:CDS |
| GTTAATGTGAACATGGCAAT+TGG | 0.535532 | 3.1:+58163295 | MS.gene82549:CDS |
| TGAGAAAATCATCAGCATAT+GGG | 0.536370 | 3.1:+58164196 | MS.gene82549:CDS |
| GGTTCATTCGCTTGTTCAAG+AGG | 0.536739 | 3.1:+58164497 | MS.gene82549:CDS |
| CCGTGCCCCGAGTTTCGCAA+AGG | 0.542263 | 3.1:+58163685 | MS.gene82549:CDS |
| CGTGCCCCGAGTTTCGCAAA+GGG | 0.545575 | 3.1:+58163686 | MS.gene82549:CDS |
| CAAAGTGAAGACTTGCTCAA+GGG | 0.550348 | 3.1:+58163570 | MS.gene82549:CDS |
| AGTGTCCATTTGTTCATCCA+GGG | 0.552058 | 3.1:+58163614 | MS.gene82549:CDS |
| TCAGCTACCAATGGAGACAT+AGG | 0.556570 | 3.1:-58163931 | None:intergenic |
| TGCTGAACCGGATGTCTCGT+GGG | 0.564361 | 3.1:+58164476 | MS.gene82549:CDS |
| ATGCTGAACCGGATGTCTCG+TGG | 0.566787 | 3.1:+58164475 | MS.gene82549:CDS |
| TCAAAGTGAAGACTTGCTCA+AGG | 0.569283 | 3.1:+58163569 | MS.gene82549:CDS |
| ATCAATTCCAATCTATGAGT+AGG | 0.579232 | 3.1:+58164103 | MS.gene82549:CDS |
| GCTACAATCTGCTCTGCCCA+TGG | 0.583391 | 3.1:-58164591 | None:intergenic |
| AGCCTGGTTCTGTATTGTGC+AGG | 0.587665 | 3.1:-58163769 | None:intergenic |
| CCTTTGCGAAACTCGGGGCA+CGG | 0.588011 | 3.1:-58163685 | None:intergenic |
| TTACATTGTGCTGTTGCTGG+TGG | 0.591769 | 3.1:+58163337 | MS.gene82549:CDS |
| ATCCTGCACAATACAGAACC+AGG | 0.592720 | 3.1:+58163767 | MS.gene82549:CDS |
| GGAGATGAATCAGCTACCAA+TGG | 0.593824 | 3.1:-58163940 | None:intergenic |
| AAAGTGAAGACTTGCTCAAG+GGG | 0.602277 | 3.1:+58163571 | MS.gene82549:CDS |
| CTGAGATATTTGGTGCTGAG+AGG | 0.605138 | 3.1:+58164535 | MS.gene82549:CDS |
| AAACATGGTTAATGTGAACA+TGG | 0.608674 | 3.1:+58163288 | MS.gene82549:CDS |
| ATGGATAACTTGCTTGAACA+TGG | 0.610654 | 3.1:-58164149 | None:intergenic |
| GTGCTTCCGAATCGAACAGT+AGG | 0.611938 | 3.1:+58164328 | MS.gene82549:CDS |
| CTAAGAATGGAAATTACATG+TGG | 0.612183 | 3.1:+58163962 | MS.gene82549:CDS |
| TTTGTTTGGAAGCATTAGGG+TGG | 0.614081 | 3.1:+58163246 | MS.gene82549:CDS |
| CACACAAACATGAAGAGTTG+AGG | 0.614467 | 3.1:+58163836 | MS.gene82549:CDS |
| TAAACAGAAGTTATCACCAT+GGG | 0.614531 | 3.1:+58164575 | MS.gene82549:CDS |
| ATGTCCCTTTGCGAAACTCG+GGG | 0.621584 | 3.1:-58163690 | None:intergenic |
| TCATTGCCTGATATAAACAA+TGG | 0.636775 | 3.1:+58163511 | MS.gene82549:CDS |
| AACAAAGAAGCAATCATAAG+GGG | 0.639045 | 3.1:-58163229 | None:intergenic |
| TCGAACAGTAGGATGAACTC+TGG | 0.639055 | 3.1:+58164339 | MS.gene82549:CDS |
| GTGTCCATTTGTTCATCCAG+GGG | 0.641621 | 3.1:+58163615 | MS.gene82549:CDS |
| GGTGTGTCAAGACACCATAT+CGG | 0.652931 | 3.1:+58164306 | MS.gene82549:CDS |
| AGCCAAAGCTTTATGGATCG+CGG | 0.654674 | 3.1:+58164285 | MS.gene82549:CDS |
| GCTTTGGCTTCGTGTCACAA+AGG | 0.657576 | 3.1:-58164271 | None:intergenic |
| ATATATCATTGAAACAAACA+TGG | 0.659164 | 3.1:+58163273 | MS.gene82549:CDS |
| GCTATGATATCAATGAGGCA+GGG | 0.681589 | 3.1:+58163152 | MS.gene82549:CDS |
| ATAAACAGAAGTTATCACCA+TGG | 0.684013 | 3.1:+58164574 | MS.gene82549:CDS |
| ACATCCGGTTCAGCATGTTG+AGG | 0.690924 | 3.1:-58164468 | None:intergenic |
| GCTACCAATGGAGACATAGG+TGG | 0.695473 | 3.1:-58163928 | None:intergenic |
| AAAGGGCTATGATATCAATG+AGG | 0.712259 | 3.1:+58163147 | MS.gene82549:CDS |
| GAACCAGTAGAAGCATACAA+AGG | 0.717416 | 3.1:-58163859 | None:intergenic |
| AAATATCTCAGAATTCTCAG+AGG | 0.724613 | 3.1:-58164523 | None:intergenic |
| GATGCATGTGAGTATTCACA+TGG | 0.742964 | 3.1:+58163724 | MS.gene82549:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTGGATTTAGAAATAATA+TGG | + | chr3.1:58164422-58164441 | MS.gene82549:CDS | 15.0% |
| !! | ATATATCATTGAAACAAACA+TGG | + | chr3.1:58163273-58163292 | MS.gene82549:CDS | 20.0% |
| !!! | ACTTCTAATTCTTTTGATTT+AGG | - | chr3.1:58163457-58163476 | None:intergenic | 20.0% |
| !!! | TTTTGGTATTGTAGAAAAAT+AGG | + | chr3.1:58163175-58163194 | MS.gene82549:CDS | 20.0% |
| ! | AAAACACCATTGTTTATATC+AGG | - | chr3.1:58163520-58163539 | None:intergenic | 25.0% |
| ! | AAACAAAGAAGCAATCATAA+GGG | - | chr3.1:58163233-58163252 | None:intergenic | 25.0% |
| ! | ATGATATTGAAGCTTTCAAA+AGG | + | chr3.1:58163113-58163132 | MS.gene82549:CDS | 25.0% |
| ! | GAGTTTAACAATCTCAAATT+TGG | - | chr3.1:58163371-58163390 | None:intergenic | 25.0% |
| ! | TGATATTGAAGCTTTCAAAA+GGG | + | chr3.1:58163114-58163133 | MS.gene82549:CDS | 25.0% |
| !! | ATTCAAGTAAAGTTGAGTTT+TGG | - | chr3.1:58163081-58163100 | None:intergenic | 25.0% |
| !! | ATTTGAGATTGTTAAACTCT+TGG | + | chr3.1:58163372-58163391 | MS.gene82549:CDS | 25.0% |
| !! | TTGAAAAAATCTGCTTCTTT+TGG | + | chr3.1:58164405-58164424 | MS.gene82549:CDS | 25.0% |
| AAAAGGGAAGTAGAAGAAAA+GGG | + | chr3.1:58163130-58163149 | MS.gene82549:CDS | 30.0% | |
| AAACATGGTTAATGTGAACA+TGG | + | chr3.1:58163288-58163307 | MS.gene82549:CDS | 30.0% | |
| AAATATCTCAGAATTCTCAG+AGG | - | chr3.1:58164526-58164545 | None:intergenic | 30.0% | |
| AACAAAGAAGCAATCATAAG+GGG | - | chr3.1:58163232-58163251 | None:intergenic | 30.0% | |
| AAGGGATTTGTATCAAGAAA+TGG | + | chr3.1:58164041-58164060 | MS.gene82549:CDS | 30.0% | |
| AGATTGGGTTTCAAATGATT+GGG | + | chr3.1:58164368-58164387 | MS.gene82549:CDS | 30.0% | |
| ATAAACAGAAGTTATCACCA+TGG | + | chr3.1:58164574-58164593 | MS.gene82549:CDS | 30.0% | |
| ATCAATTCCAATCTATGAGT+AGG | + | chr3.1:58164103-58164122 | MS.gene82549:CDS | 30.0% | |
| ATGAGAAAATCATCAGCATA+TGG | + | chr3.1:58164195-58164214 | MS.gene82549:CDS | 30.0% | |
| ATTGGTAAAGATTCTTGTGA+AGG | - | chr3.1:58163892-58163911 | None:intergenic | 30.0% | |
| CAAACAAAGAAGCAATCATA+AGG | - | chr3.1:58163234-58163253 | None:intergenic | 30.0% | |
| CACATGTAATTTCCATTCTT+AGG | - | chr3.1:58163964-58163983 | None:intergenic | 30.0% | |
| CTAAGAATGGAAATTACATG+TGG | + | chr3.1:58163962-58163981 | MS.gene82549:CDS | 30.0% | |
| CTCATAGATTGGAATTGATT+AGG | - | chr3.1:58164102-58164121 | None:intergenic | 30.0% | |
| CTTATGATTGCTTCTTTGTT+TGG | + | chr3.1:58163232-58163251 | MS.gene82549:CDS | 30.0% | |
| GAAAAATTCTTTGAGTGCAA+GGG | + | chr3.1:58164023-58164042 | MS.gene82549:CDS | 30.0% | |
| TAAACAGAAGTTATCACCAT+GGG | + | chr3.1:58164575-58164594 | MS.gene82549:CDS | 30.0% | |
| TCATTGCCTGATATAAACAA+TGG | + | chr3.1:58163511-58163530 | MS.gene82549:CDS | 30.0% | |
| TGAAAAATTCTTTGAGTGCA+AGG | + | chr3.1:58164022-58164041 | MS.gene82549:CDS | 30.0% | |
| TGAGAAAATCATCAGCATAT+GGG | + | chr3.1:58164196-58164215 | MS.gene82549:CDS | 30.0% | |
| ! | GGTGTAGAAACATTTGAAAT+TGG | - | chr3.1:58163910-58163929 | None:intergenic | 30.0% |
| ! | TATGCTGATGATTTTCTCAT+AGG | - | chr3.1:58164195-58164214 | None:intergenic | 30.0% |
| !! | TCTGAGAATTCTGAGATATT+TGG | + | chr3.1:58164525-58164544 | MS.gene82549:CDS | 30.0% |
| !! | TTCTTTGTTTGGAAGCATTA+GGG | + | chr3.1:58163243-58163262 | MS.gene82549:CDS | 30.0% |
| !!! | CTGCTTAATTTTTTCGTCAA+GGG | - | chr3.1:58163422-58163441 | None:intergenic | 30.0% |
| !!! | TCTGCTTAATTTTTTCGTCA+AGG | - | chr3.1:58163423-58163442 | None:intergenic | 30.0% |
| AAAGGGCTATGATATCAATG+AGG | + | chr3.1:58163147-58163166 | MS.gene82549:CDS | 35.0% | |
| AATCTCATCTTTACAAAGCC+TGG | - | chr3.1:58163788-58163807 | None:intergenic | 35.0% | |
| CAAAAGGGAAGTAGAAGAAA+AGG | + | chr3.1:58163129-58163148 | MS.gene82549:CDS | 35.0% | |
| CAGATTGGGTTTCAAATGAT+TGG | + | chr3.1:58164367-58164386 | MS.gene82549:CDS | 35.0% | |
| CAGCTATAAGGATACTTCTT+TGG | - | chr3.1:58163661-58163680 | None:intergenic | 35.0% | |
| GAAGTTGAGAAGAAAGATTC+AGG | + | chr3.1:58163472-58163491 | MS.gene82549:CDS | 35.0% | |
| GATGAAACAATGCTGTTGAA+TGG | - | chr3.1:58164171-58164190 | None:intergenic | 35.0% | |
| GCATTGAAATACCATGTAAC+AGG | - | chr3.1:58164068-58164087 | None:intergenic | 35.0% | |
| GTTAATGTGAACATGGCAAT+TGG | + | chr3.1:58163295-58163314 | MS.gene82549:CDS | 35.0% | |
| TGGAATTGATTAGGAGTTGA+AGG | - | chr3.1:58164093-58164112 | None:intergenic | 35.0% | |
| ! | GGCTTTGTAAAGATGAGATT+AGG | + | chr3.1:58163788-58163807 | MS.gene82549:CDS | 35.0% |
| !! | ATGGATAACTTGCTTGAACA+TGG | - | chr3.1:58164152-58164171 | None:intergenic | 35.0% |
| !! | CTTCTTTGTTTGGAAGCATT+AGG | + | chr3.1:58163242-58163261 | MS.gene82549:CDS | 35.0% |
| !! | GAATTTTTCAGCTGCAATGA+AGG | - | chr3.1:58164012-58164031 | None:intergenic | 35.0% |
| ACTCACATGCATCTTTCTTC+TGG | - | chr3.1:58163717-58163736 | None:intergenic | 40.0% | |
| AGTGTCCATTTGTTCATCCA+GGG | + | chr3.1:58163614-58163633 | MS.gene82549:CDS | 40.0% | |
| CAAGAAATGGACCTGTTACA+TGG | + | chr3.1:58164054-58164073 | MS.gene82549:CDS | 40.0% | |
| CACACAAACATGAAGAGTTG+AGG | + | chr3.1:58163836-58163855 | MS.gene82549:CDS | 40.0% | |
| GATGCATGTGAGTATTCACA+TGG | + | chr3.1:58163724-58163743 | MS.gene82549:CDS | 40.0% | |
| GCTATGATATCAATGAGGCA+GGG | + | chr3.1:58163152-58163171 | MS.gene82549:CDS | 40.0% | |
| GCTGAAACCTACTCATAGAT+TGG | - | chr3.1:58164113-58164132 | None:intergenic | 40.0% | |
| GTTCATCCTACTGTTCGATT+CGG | - | chr3.1:58164337-58164356 | None:intergenic | 40.0% | |
| GTTTGATTCATCAGCTGCTA+TGG | + | chr3.1:58164218-58164237 | MS.gene82549:CDS | 40.0% | |
| ! | AAAGTGAAGACTTGCTCAAG+GGG | + | chr3.1:58163571-58163590 | MS.gene82549:CDS | 40.0% |
| ! | ATATCAATGAGGCAGGGTTT+TGG | + | chr3.1:58163158-58163177 | MS.gene82549:CDS | 40.0% |
| ! | CAAAGTGAAGACTTGCTCAA+GGG | + | chr3.1:58163570-58163589 | MS.gene82549:CDS | 40.0% |
| ! | CTTGAACATGGTTCCTGTTT+TGG | - | chr3.1:58164140-58164159 | None:intergenic | 40.0% |
| ! | GAACCAGTAGAAGCATACAA+AGG | - | chr3.1:58163862-58163881 | None:intergenic | 40.0% |
| ! | GCTGATTCATCTCCTAAGAA+TGG | + | chr3.1:58163949-58163968 | MS.gene82549:CDS | 40.0% |
| ! | GTTAAACTCTTGGTTGATGC+TGG | + | chr3.1:58163382-58163401 | MS.gene82549:CDS | 40.0% |
| ! | TCAAAGTGAAGACTTGCTCA+AGG | + | chr3.1:58163569-58163588 | MS.gene82549:CDS | 40.0% |
| !! | TTTGTTTGGAAGCATTAGGG+TGG | + | chr3.1:58163246-58163265 | MS.gene82549:CDS | 40.0% |
| !! | TTTTTCAGCTGCAATGAAGG+TGG | - | chr3.1:58164009-58164028 | None:intergenic | 40.0% |
| AGGCCTTTGTATGCTTCTAC+TGG | + | chr3.1:58163856-58163875 | MS.gene82549:CDS | 45.0% | |
| ATCCTGCACAATACAGAACC+AGG | + | chr3.1:58163767-58163786 | MS.gene82549:CDS | 45.0% | |
| CAAGGGGTTACACTCATGAT+TGG | + | chr3.1:58163587-58163606 | MS.gene82549:CDS | 45.0% | |
| CTGCAGCAGTGATGAATTCA+AGG | + | chr3.1:58164241-58164260 | MS.gene82549:CDS | 45.0% | |
| GAACTCTGGTCTGTCAGATT+GGG | + | chr3.1:58164353-58164372 | MS.gene82549:CDS | 45.0% | |
| GACACGAAGCCAAAGCTTTA+TGG | + | chr3.1:58164278-58164297 | MS.gene82549:CDS | 45.0% | |
| GAGTGTCCATTTGTTCATCC+AGG | + | chr3.1:58163613-58163632 | MS.gene82549:CDS | 45.0% | |
| GGAGATGAATCAGCTACCAA+TGG | - | chr3.1:58163943-58163962 | None:intergenic | 45.0% | |
| GGCTATGATATCAATGAGGC+AGG | + | chr3.1:58163151-58163170 | MS.gene82549:CDS | 45.0% | |
| GGTGTGTCAAGACACCATAT+CGG | + | chr3.1:58164306-58164325 | MS.gene82549:CDS | 45.0% | |
| GGTTCATTCGCTTGTTCAAG+AGG | + | chr3.1:58164497-58164516 | MS.gene82549:CDS | 45.0% | |
| GGTTTCAGCAGAACCAAAAC+AGG | + | chr3.1:58164124-58164143 | MS.gene82549:CDS | 45.0% | |
| GTGTCCATTTGTTCATCCAG+GGG | + | chr3.1:58163615-58163634 | MS.gene82549:CDS | 45.0% | |
| TACACCACCTATGTCTCCAT+TGG | + | chr3.1:58163924-58163943 | MS.gene82549:CDS | 45.0% | |
| TCAGCTACCAATGGAGACAT+AGG | - | chr3.1:58163934-58163953 | None:intergenic | 45.0% | |
| TCGAACAGTAGGATGAACTC+TGG | + | chr3.1:58164339-58164358 | MS.gene82549:CDS | 45.0% | |
| TGAACTCTGGTCTGTCAGAT+TGG | + | chr3.1:58164352-58164371 | MS.gene82549:CDS | 45.0% | |
| TTCTCCCCTGGATGAACAAA+TGG | - | chr3.1:58163622-58163641 | None:intergenic | 45.0% | |
| ! | AGCCAAAGCTTTATGGATCG+CGG | + | chr3.1:58164285-58164304 | MS.gene82549:CDS | 45.0% |
| ! | GCATTACATTGTGCTGTTGC+TGG | + | chr3.1:58163334-58163353 | MS.gene82549:CDS | 45.0% |
| ! | TTACATTGTGCTGTTGCTGG+TGG | + | chr3.1:58163337-58163356 | MS.gene82549:CDS | 45.0% |
| !! | CTGAGATATTTGGTGCTGAG+AGG | + | chr3.1:58164535-58164554 | MS.gene82549:CDS | 45.0% |
| ACATCCGGTTCAGCATGTTG+AGG | - | chr3.1:58164471-58164490 | None:intergenic | 50.0% | |
| ATGTCCCTTTGCGAAACTCG+GGG | - | chr3.1:58163693-58163712 | None:intergenic | 50.0% | |
| CACCGCGATCCATAAAGCTT+TGG | - | chr3.1:58164290-58164309 | None:intergenic | 50.0% | |
| CATGTCCCTTTGCGAAACTC+GGG | - | chr3.1:58163694-58163713 | None:intergenic | 50.0% | |
| GAATGAACCCACGAGACATC+CGG | - | chr3.1:58164486-58164505 | None:intergenic | 50.0% | |
| GCATGTCCCTTTGCGAAACT+CGG | - | chr3.1:58163695-58163714 | None:intergenic | 50.0% | |
| GCTACCAATGGAGACATAGG+TGG | - | chr3.1:58163931-58163950 | None:intergenic | 50.0% | |
| GTGCTTCCGAATCGAACAGT+AGG | + | chr3.1:58164328-58164347 | MS.gene82549:CDS | 50.0% | |
| TTCATCCAGGGGAGAATGCT+AGG | + | chr3.1:58163626-58163645 | MS.gene82549:CDS | 50.0% | |
| ! | GCTTTGGCTTCGTGTCACAA+AGG | - | chr3.1:58164274-58164293 | None:intergenic | 50.0% |
| !! | AGCCTGGTTCTGTATTGTGC+AGG | - | chr3.1:58163772-58163791 | None:intergenic | 50.0% |
| !! | TCGATTCGGAAGCACCGATA+TGG | - | chr3.1:58164323-58164342 | None:intergenic | 50.0% |
| ACGGCCTCAACATGCTGAAC+CGG | + | chr3.1:58164464-58164483 | MS.gene82549:CDS | 55.0% | |
| AGCATGTTGAGGCCGTGCAA+CGG | - | chr3.1:58164460-58164479 | None:intergenic | 55.0% | |
| ATGCTGAACCGGATGTCTCG+TGG | + | chr3.1:58164475-58164494 | MS.gene82549:CDS | 55.0% | |
| CTTCTCCTAGCATTCTCCCC+TGG | - | chr3.1:58163634-58163653 | None:intergenic | 55.0% | |
| GCTACAATCTGCTCTGCCCA+TGG | - | chr3.1:58164594-58164613 | None:intergenic | 55.0% | |
| GGGCACGGAACACAGCTATA+AGG | - | chr3.1:58163673-58163692 | None:intergenic | 55.0% | |
| TGCTGAACCGGATGTCTCGT+GGG | + | chr3.1:58164476-58164495 | MS.gene82549:CDS | 55.0% | |
| CCTTTGCGAAACTCGGGGCA+CGG | - | chr3.1:58163688-58163707 | None:intergenic | 60.0% | |
| CGTGCCCCGAGTTTCGCAAA+GGG | + | chr3.1:58163686-58163705 | MS.gene82549:CDS | 60.0% | |
| GCATGTTGAGGCCGTGCAAC+GGG | - | chr3.1:58164459-58164478 | None:intergenic | 60.0% | |
| CCGTGCCCCGAGTTTCGCAA+AGG | + | chr3.1:58163685-58163704 | MS.gene82549:CDS | 65.0% | |
| ! | CTGCTGCTTCGCCCGTTGCA+CGG | + | chr3.1:58164445-58164464 | MS.gene82549:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 58163064 | 58164617 | 58163064 | ID=MS.gene82549 |
| chr3.1 | mRNA | 58163064 | 58164617 | 58163064 | ID=MS.gene82549.t1;Parent=MS.gene82549 |
| chr3.1 | exon | 58163064 | 58164617 | 58163064 | ID=MS.gene82549.t1.exon1;Parent=MS.gene82549.t1 |
| chr3.1 | CDS | 58163064 | 58164617 | 58163064 | ID=cds.MS.gene82549.t1;Parent=MS.gene82549.t1 |
| Gene Sequence |
| Protein sequence |
