AlfalfaGEDB | MS.gene83582

M. sativa cultivar XinJiangDaYe / MS.gene83582

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene83582.t1	XP_013465584.1	98.2	335	6	0	19	353	81	415	3.00E-181	644.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene83582.t1	Q0V7T5	59.5	304	112	3	44	343	130	426	1.0e-100	368.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene83582.t1	A0A072VN94	98.2	335	6	0	19	353	81	415	2.2e-181	644.4

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049260	MS.gene83582	0.819641	1.04E-52	-1.69E-46
MS.gene050301	MS.gene83582	0.829674	4.51E-55	-1.69E-46
MS.gene050558	MS.gene83582	0.806574	7.70E-50	-1.69E-46
MS.gene050560	MS.gene83582	0.822669	2.09E-53	-1.69E-46
MS.gene051860	MS.gene83582	0.806372	8.49E-50	-1.69E-46
MS.gene053204	MS.gene83582	0.801602	8.33E-49	-1.69E-46
MS.gene054010	MS.gene83582	0.826161	3.16E-54	-1.69E-46
MS.gene054011	MS.gene83582	0.813093	3.05E-51	-1.69E-46
MS.gene054012	MS.gene83582	0.815107	1.09E-51	-1.69E-46
MS.gene054013	MS.gene83582	0.809886	1.52E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene83582.t1	MTR_2g104790	98.209	335	6	0	19	353	81	415	0.0	681
MS.gene83582.t1	MTR_3g106320	66.230	305	100	1	44	345	81	385	1.65e-150	431
MS.gene83582.t1	MTR_4g014900	64.557	316	108	2	34	345	134	449	1.55e-146	422
MS.gene83582.t1	MTR_1g013040	63.066	287	102	2	34	316	129	415	2.07e-127	372
MS.gene83582.t1	MTR_1g013040	61.818	275	101	2	34	304	129	403	8.17e-119	349
MS.gene83582.t1	MTR_4g014900	61.818	275	101	2	34	304	134	408	8.43e-119	349
MS.gene83582.t1	MTR_7g058810	43.789	322	167	6	18	329	50	367	2.97e-88	272
MS.gene83582.t1	MTR_1g082580	46.519	316	158	6	44	349	131	445	5.38e-87	269
MS.gene83582.t1	MTR_2g084120	45.631	309	154	4	37	333	68	374	7.58e-87	268
MS.gene83582.t1	MTR_3g115500	43.182	308	168	3	29	329	16	323	1.68e-84	260

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene83582.t1	AT4G32000	62.874	334	116	3	14	343	84	413	3.60e-142	409
MS.gene83582.t1	AT4G32000	67.105	304	96	2	44	343	111	414	1.12e-141	408
MS.gene83582.t1	AT2G25220	64.194	310	107	2	40	345	74	383	4.85e-141	405
MS.gene83582.t1	AT4G32000	67.105	304	96	2	44	343	153	456	6.84e-141	407
MS.gene83582.t1	AT2G25220	64.194	310	107	2	40	345	123	432	1.62e-140	405
MS.gene83582.t1	AT2G25220	64.194	310	107	2	40	345	128	437	2.00e-140	405
MS.gene83582.t1	AT5G11020	54.728	349	149	2	6	345	17	365	4.07e-137	395
MS.gene83582.t1	AT5G11020	54.728	349	149	2	6	345	40	388	1.06e-136	394
MS.gene83582.t1	AT5G11020	54.728	349	149	2	6	345	44	392	1.17e-136	394
MS.gene83582.t1	AT5G11020	55.043	347	147	2	6	343	78	424	1.60e-136	395

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Find 70 sgRNAs with CRISPR-Local

Find 106 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACATGTAGAGGCTGCAAAA+GGG	0.530210	2.2:+1238317	MS.gene83582:CDS
AAGAGATTGATATTGGTCTG+AGG	0.672784	2.2:-1239585	None:intergenic
AAGAGCGATGTCTATGCTTT+CGG	0.435210	2.2:+1239512	MS.gene83582:CDS
AAGTCTCTATGAACCACAGG+AGG	0.635919	2.2:-1239082	None:intergenic
AATATCAATCTCTTGTTTCA+TGG	0.325282	2.2:+1239594	MS.gene83582:CDS
ACAATTGTAGGGCCTACTCG+TGG	0.656260	2.2:+1238883	MS.gene83582:intron
ACACAAGAACATGAAGATGT+CGG	0.578097	2.2:+1239275	MS.gene83582:CDS
ACATGTAGAGGCTGCAAAAG+GGG	0.588880	2.2:+1238318	MS.gene83582:CDS
AGAGGCTGCAAAAGGGGAAA+AGG	0.530613	2.2:+1238324	MS.gene83582:CDS
AGATGAATGAGTGACATAAC+AGG	0.452388	2.2:-1238286	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAATGCTGATAGAGAATTTG+AGG	+	chr2.2:1238552-1238571	MS.gene83582:CDS	30.0%
TATAATCTCATGCACCTAAT+CGG	-	chr2.2:1239383-1239402	None:intergenic	30.0%
TATACCATGTGATATGTACT+CGG	-	chr2.2:1239322-1239341	None:intergenic	30.0%
TCCTGTTATCCAAAATACAA+TGG	+	chr2.2:1239757-1239776	MS.gene83582:CDS	30.0%
TTAAGTTCTGCTGTACTTTA+TGG	+	chr2.2:1239658-1239677	MS.gene83582:intron	30.0%
AAAGGCAAATTCAGTATGCA+AGG	-	chr2.2:1238617-1238636	None:intergenic	35.0%
ACACAAGAACATGAAGATGT+CGG	+	chr2.2:1239275-1239294	MS.gene83582:CDS	35.0%
AGATGAATGAGTGACATAAC+AGG	-	chr2.2:1238289-1238308	None:intergenic	35.0%
ATACCATGTGATATGTACTC+GGG	-	chr2.2:1239321-1239340	None:intergenic	35.0%
ATCAGAATCCAGAAGAACAT+TGG	-	chr2.2:1239116-1239135	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.2	gene	1238268	1240043	1238268	ID=MS.gene83582
chr2.2	mRNA	1238268	1240043	1238268	ID=MS.gene83582.t1;Parent=MS.gene83582
chr2.2	exon	1238268	1238573	1238268	ID=MS.gene83582.t1.exon1;Parent=MS.gene83582.t1
chr2.2	CDS	1238268	1238573	1238268	ID=cds.MS.gene83582.t1;Parent=MS.gene83582.t1
chr2.2	exon	1238659	1238791	1238659	ID=MS.gene83582.t1.exon2;Parent=MS.gene83582.t1
chr2.2	CDS	1238659	1238791	1238659	ID=cds.MS.gene83582.t1;Parent=MS.gene83582.t1
chr2.2	exon	1238893	1238956	1238893	ID=MS.gene83582.t1.exon3;Parent=MS.gene83582.t1
chr2.2	CDS	1238893	1238956	1238893	ID=cds.MS.gene83582.t1;Parent=MS.gene83582.t1
chr2.2	exon	1239051	1239147	1239051	ID=MS.gene83582.t1.exon4;Parent=MS.gene83582.t1
chr2.2	CDS	1239051	1239147	1239051	ID=cds.MS.gene83582.t1;Parent=MS.gene83582.t1
chr2.2	exon	1239237	1239336	1239237	ID=MS.gene83582.t1.exon5;Parent=MS.gene83582.t1
chr2.2	CDS	1239237	1239336	1239237	ID=cds.MS.gene83582.t1;Parent=MS.gene83582.t1
chr2.2	exon	1239498	1239616	1239498	ID=MS.gene83582.t1.exon6;Parent=MS.gene83582.t1
chr2.2	CDS	1239498	1239616	1239498	ID=cds.MS.gene83582.t1;Parent=MS.gene83582.t1
chr2.2	exon	1239710	1239799	1239710	ID=MS.gene83582.t1.exon7;Parent=MS.gene83582.t1
chr2.2	CDS	1239710	1239799	1239710	ID=cds.MS.gene83582.t1;Parent=MS.gene83582.t1
chr2.2	exon	1239891	1240043	1239891	ID=MS.gene83582.t1.exon8;Parent=MS.gene83582.t1
chr2.2	CDS	1239891	1240043	1239891	ID=cds.MS.gene83582.t1;Parent=MS.gene83582.t1

Gene Sequence

>MS.gene83582

ATGCAGGCACAGAAAATTCCTGTTATGTCACTCATTCATCTATTTTTTGAACATGTAGAGGCTGCAAAAGGGGAAAAGGAAACCTCAAGCGCTGTTAGTGCTAAACTTAACTACTCAAGAATGGCTGATAAGAAGAGTTCAATTGCTATTTTCGACTTTCAGTTGTTAGAGTCTGCAACAAACAGCTTTTCCGCAGATAATATCATGGGAGAGACTGGTTCTATAATTGTTTACAGAGCTCGTTTCGATGAACATTTCCAGGCTGCTGTCAAGAAAGCAGACAGTAATGCTGATAGAGAATTTGAGGTGATGATCCTTTACAATTAGATTTCGATGTGCACTATTTCCTTGCATACTGAATTTGCCTTTAGTTATTGCACTGAATTTGCAGAATGAAGTGAGTTTGTTGAGCAAGATTCGGCATCAGAATATCATAAAAATCCTAGGCTATTGTATTCACGGTGAATCAAGGTTTCTTGTTTATGAGTACATGGAGAGTGGTTCTCTGGAATCTCAATTGCATGGTACATTTTTATTAATGTTGATTCAGAAAAGAGGGAAATATATCTCGTTTTTGGGGAATTTAAACAATATATAATTTTTTCATTGGTATTAACAATTGTAGGGCCTACTCGTGGATCGTCTTTAACTTGGTATATCCGGTTAAGAATTGCGATTGATGTTGCTAGGTGAGTCTGTGAATCTTATAGTGCTAAAGTAGTTAATACTAGAATACCATTAGTTTTTATTTATGATGACTGATACACATATTTCTTCTGCTAGAGCATTAGAATATCTCCACGAGCACTCCAATCCTCCTGTGGTTCATAGAGACTTGAAATCTTCCAATGTTCTTCTGGATTCTGATTTTAATGCCAAGGTTGGATTATACTTTGACATATTAGGCTCACATGTGGTCAATTAATAGTAAAACCTATATTTACATTTATACTGAGTTTTGTGATTCAGCTATCAGATTTTGGACTTGCTGTAGCATCTGGTGTGCAACACAAGAACATGAAGATGTCGGGAACTTTAGGATACGTGGCACCCGAGTACATATCACATGGTATATATTAGTATTAGTTTTTCAATTGTGATAATGCAAAATACCGATTAGGTGCATGAGATTATATTTACACTTTGACTCGACGTCTCGAACTATGGAACTTGATGTTTTGTTCTTTTTCTTTTTCCTCAACAAAATTTAACAATGGTAATTTTTTTCAGGTAAACTAACTGATAAGAGCGATGTCTATGCTTTCGGTGTTGTCCTTCTAGAATTACTTACCGGAAGAAAACCAATGCAGAACATGTCCTCAGACCAATATCAATCTCTTGTTTCATGGGTATGTATTAGTATTACATAATGGAGAATATGGATGAAAATTTAAGTTCTGCTGTACTTTATGGTTAAAGACTCTTTCAAATTCAATATGTAGGCCATGCCTCAGCTAACTGACAGATCAAAGCTTCCAAGTATTCTAGATCCTGTTATCCAAAATACAATGGATTTGAAGCATTTATATCAGGTTCATTGAATAGAAGTACTGTAATCACATGTTTTAATGCTGAGTGATAAATGCTAGTACTTCTTAATTCATCTAACATTCTACTCTACAGGTTGCTGCAGTGGCTGTGCTATGTGTGCAAGCTGAACCAAGTTATAGGCCACTAATAACAGATGTTCTGCACTCTCTCATCCCTTTGGTACCCTTAGAGCTTGGAGGGTCACTCAGAGTTACAGAACCAATCGGCTCGGAAAATCTTCAATGA

Protein sequence

>MS.gene83582.t1

MQAQKIPVMSLIHLFFEHVEAAKGEKETSSAVSAKLNYSRMADKKSSIAIFDFQLLESATNSFSADNIMGETGSIIVYRARFDEHFQAAVKKADSNADREFENEVSLLSKIRHQNIIKILGYCIHGESRFLVYEYMESGSLESQLHGPTRGSSLTWYIRLRIAIDVARALEYLHEHSNPPVVHRDLKSSNVLLDSDFNAKLSDFGLAVASGVQHKNMKMSGTLGYVAPEYISHGKLTDKSDVYAFGVVLLELLTGRKPMQNMSSDQYQSLVSWAMPQLTDRSKLPSILDPVIQNTMDLKHLYQVAAVAVLCVQAEPSYRPLITDVLHSLIPLVPLELGGSLRVTEPIGSENLQ