AlfalfaGEDB | MS.gene053204

M. sativa cultivar XinJiangDaYe / MS.gene053204

KEGG: K00648
GO: GO:0003674 GO:0003824 GO:0004312 GO:0004315 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009987 GO:0016053 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0032787 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0046394 GO:0071704 GO:0072330 GO:1901576
PFAM: PF08541.13 PF08545.13

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene053204.t1	XP_003604258.1	94.4	376	21	0	1	376	1	376	2.00E-199	704.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene053204.t1	P49243	65.7	388	113	4	6	375	18	403	1.6e-141	503.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene053204.t1	G7JEG5	94.4	376	21	0	1	376	1	376	1.4e-199	704.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049150	MS.gene053204	0.805318	1.41E-49	-1.69E-46
MS.gene049260	MS.gene053204	0.839476	1.55E-57	-1.69E-46
MS.gene050128	MS.gene053204	0.813712	2.23E-51	-1.69E-46
MS.gene050584	MS.gene053204	0.801075	1.07E-48	-1.69E-46
MS.gene050762	MS.gene053204	0.808648	2.79E-50	-1.69E-46
MS.gene050763	MS.gene053204	0.811106	8.26E-51	-1.69E-46
MS.gene051626	MS.gene053204	0.803283	3.75E-49	-1.69E-46
MS.gene051789	MS.gene053204	0.847112	1.42E-59	-1.69E-46
MS.gene052178	MS.gene053204	0.806908	6.55E-50	-1.69E-46
MS.gene053074	MS.gene053204	0.87366	1.24E-67	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene053204.t1	MTR_4g007180	94.415	376	21	0	1	376	1	376	0.0	699
MS.gene053204.t1	MTR_2g105100	72.543	346	95	0	31	376	51	396	0.0	526
MS.gene053204.t1	MTR_5g009640	65.217	207	53	1	170	376	168	355	1.37e-88	271

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene053204.t1	AT1G62640	65.722	388	113	4	6	375	18	403	0.0	520
MS.gene053204.t1	AT1G62640	65.722	388	113	4	6	375	18	403	0.0	520

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Find 76 sgRNAs with CRISPR-Local

Find 228 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACATTACAGCTGCATGTAG+TGG	0.532984	4.2:+92482123	MS.gene053204:CDS
AACCAATCAATGCTGGATGC+AGG	0.515256	4.2:-92483051	None:intergenic
AACTCGACGTTTACGAATCC+CGG	0.530634	4.2:-92480959	None:intergenic
AAGACATACCTTGGCAAAGG+AGG	0.582045	4.2:-92479841	None:intergenic
AAGATTAGGTCAACATCACC+TGG	0.602574	4.2:-92481770	None:intergenic
AAGTGCAGCTTCCATTCCAT+TGG	0.525636	4.2:+92483335	MS.gene053204:CDS
AATGCAGCATATAAAGAAGA+AGG	0.507598	4.2:+92482871	MS.gene053204:CDS
AATGCATCAGACTCAATTAA+GGG	0.492850	4.2:+92482901	MS.gene053204:CDS
AATGGATAAGTGTTCGCACC+GGG	0.577062	4.2:+92480941	MS.gene053204:CDS
AATTGAGTCAGCACTTCAAA+AGG	0.479873	4.2:+92483020	MS.gene053204:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATCAAGTCAAACCTTGTT+AGG	-	chr4.2:92481660-92481679	None:intergenic	30.0%
AATCAAGTCAAACCTTGTTA+GGG	-	chr4.2:92481659-92481678	None:intergenic	30.0%
AATGAGGATTGTTCATGATT+CGG	+	chr4.2:92481183-92481202	MS.gene053204:intron	30.0%
AATGCAGCATATAAAGAAGA+AGG	+	chr4.2:92482871-92482890	MS.gene053204:CDS	30.0%
AATGCATCAGACTCAATTAA+GGG	+	chr4.2:92482901-92482920	MS.gene053204:CDS	30.0%
AGAAGTTCATGTATTCTGTT+TGG	+	chr4.2:92482338-92482357	MS.gene053204:CDS	30.0%
AGTTAGAAGTGGAAAGATTA+AGG	+	chr4.2:92483371-92483390	MS.gene053204:CDS	30.0%
ATATCAAATGTGGCTGATTA+TGG	+	chr4.2:92483306-92483325	MS.gene053204:CDS	30.0%
ATCATTATGACCTTTATCTC+TGG	-	chr4.2:92480204-92480223	None:intergenic	30.0%
ATGCAGCATATAAAGAAGAA+GGG	+	chr4.2:92482872-92482891	MS.gene053204:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.2	gene	92479745	92483467	92479745	ID=MS.gene053204
chr4.2	mRNA	92479745	92483467	92479745	ID=MS.gene053204.t1;Parent=MS.gene053204
chr4.2	exon	92479745	92479854	92479745	ID=MS.gene053204.t1.exon1;Parent=MS.gene053204.t1
chr4.2	CDS	92479745	92479854	92479745	ID=cds.MS.gene053204.t1;Parent=MS.gene053204.t1
chr4.2	exon	92480840	92480988	92480840	ID=MS.gene053204.t1.exon2;Parent=MS.gene053204.t1
chr4.2	CDS	92480840	92480988	92480840	ID=cds.MS.gene053204.t1;Parent=MS.gene053204.t1
chr4.2	exon	92481702	92481838	92481702	ID=MS.gene053204.t1.exon3;Parent=MS.gene053204.t1
chr4.2	CDS	92481702	92481838	92481702	ID=cds.MS.gene053204.t1;Parent=MS.gene053204.t1
chr4.2	exon	92482081	92482186	92482081	ID=MS.gene053204.t1.exon4;Parent=MS.gene053204.t1
chr4.2	CDS	92482081	92482186	92482081	ID=cds.MS.gene053204.t1;Parent=MS.gene053204.t1
chr4.2	exon	92482270	92482388	92482270	ID=MS.gene053204.t1.exon5;Parent=MS.gene053204.t1
chr4.2	CDS	92482270	92482388	92482270	ID=cds.MS.gene053204.t1;Parent=MS.gene053204.t1
chr4.2	exon	92482579	92482643	92482579	ID=MS.gene053204.t1.exon6;Parent=MS.gene053204.t1
chr4.2	CDS	92482579	92482643	92482579	ID=cds.MS.gene053204.t1;Parent=MS.gene053204.t1
chr4.2	exon	92482864	92483086	92482864	ID=MS.gene053204.t1.exon7;Parent=MS.gene053204.t1
chr4.2	CDS	92482864	92483086	92482864	ID=cds.MS.gene053204.t1;Parent=MS.gene053204.t1
chr4.2	exon	92483246	92483467	92483246	ID=MS.gene053204.t1.exon8;Parent=MS.gene053204.t1
chr4.2	CDS	92483246	92483467	92483246	ID=cds.MS.gene053204.t1;Parent=MS.gene053204.t1

Gene Sequence

>MS.gene053204

ATGTATCTACCAACTTCACTCCTTCATCTTCCCCTCTTATCACCTTCCATTTCCTCAAAACTTGTTTGCTTTAGTGCTCACAACCATGATTCCCAACCTCCTTTGCCAAGGTATGTCTTAGAATTTCTCTATTGTCTCACATCATCACTCTTTCATTTTATATCATACACTAGGTTTTAATAAGTTATGGTTGCACTCACGTAGTAATTCTTGATATTATTTCATGATCAAATGTTGACTCAAATGTCAATCACAATCGTCATCACTAGGCATAAAAGTTGCCGAATATGTAATCAACCCACACCTTACATCTTATAACAAATAATCAACATGACCTCGAATGAGTTTTCTCTATCAAGCTTATTTTACCTATGAGACGAATTTTCATCTCTTTGATCTTGTTATTTGTAAAAGTTGTCATTATTATTGTTGATAACTGTTACAAATCATGGAATCCCAGAGATAAAGGTCATAATGATCAACAAGAAAGAGTGCATAAGAGTCTTCATATGGGAGATACCCATAAAGACTCATAGTAAAGTGAACATATATTGATAAAAGATTAATAGGAAGTACAATGGTGAGAGTTATTTATAGGAGTGAGTTAGTCTAACTAACTCCTAACCACCTAACCTATCAACTAACCATAGTTTAGTTATCAACTAACTATGGTTTATTCACTATACTCTATTCATTATAAACAAATGTGGTTGATGCATGTAAATGAAATTGTGGTTGGTATACAATTTTGAAGACCTCAAAAACCTTAATATTGAGGTCGCATTTGCATTCATTTGACGACAATTTAAAGCCAAGGCGACTATTATGTTAAATTTTGATGATCGCAATGGAACTGCATCTTGTTGCCCGCTTGCCTTCCTCCTGTGCAATTTTTTTATTACACAAGCATATTGTGACAACTTCATATTATCATATTAGACAAATATTTATGATTAAAAAAAATTAAAATCAAACCATGATGGTTATAATTTGTATAATAGTTCCTGCATCCTTGTTGAATTTGGACTCTTACTCTCAGTGCCATAACTTGGAACCATATTTTAGAGTTTGTTACAGTAATTCAAATCTTTGCAGACTTGTTAGTCAAGGCTGCAAGCTGGTAGGATGTGGTTCAGCTGTGCCAACTCTTGAGATTACTAATGACGAGCTTGCAAAAATAGTTGATACTTCTGATGAATGGATAAGTGTTCGCACCGGGATTCGTAAACGTCGAGTTCTTTCAGGTTAGTTTATTGCTAATTTGCTACGTAAACATCATAAATAGAATGGTTACAGCTGAATTGAATTTGGCTTTTATGGAGTGGTGATAGTTTAGAAATCTCATCCATGTTTCCATAAGTATGTAGAAGAAATTGTTTTGAGATATTGTTGGAAGTTGTATTCTGTTTTCAATTATTGATGGGCCTATTAGTGTAATAATGAGGATTGTTCATGATTCGGTCCAAGAAAGAAAACCGAACTGTTACAATGGTTTGGTAAAATTGAACCAAATCGTTAATGGCCGGCCCTGAACCAGAACTATATTTAGAGAAAACCAAACTACATTTTTTTTTTCTTCGAACTGAAATGATTCTATGTGAACGGAAATGTACCAAACTTATATTATCAACTGATAATTAGTTGATCAGTTCGTGAACTATCGGTCATAGTTCAGCTCTTTCGTGCGATTTGGTTTGGTCTAATAGTTCAATTTAGTTTTCGGGTTTTTTAACAATCCTAGTAATAAATGTGAGTAAGAAGTCCCATATTAGATGAAAATGTGAATGTTGAATAATATAGAGATGAGACGAACTATATATCCAATGTCTTATAAGGTTTCAGGTAAAAATGTGGTAAATAGTTGCTCATAGCCCCAGTGTTATGATTCTTTGGTGTTTTAGTTTCTCTCTTCCCTAACAAGGTTTGACTTGATTTTGCTTGATGTTTATGGTTGCAGGTGGAGAAAACTTGACCACTTTATCAGTAGAGGCAGCAAGGAAAGCTCTTGAGATGGCAAAGGTTGATCCAGGTGATGTTGACCTAATCTTGGTGTGTTCATCTACTTCAGATGATCTTTTTGGCACTGGTCCTCAGGTTAGTATTGGTTATAGGTGTATAATAACATTTTATTTAGATTATATCACTCCAATTTTTATATAAGTAAAAAGTACATATATCTGGTCCAATGCACCTTTTTGCTTATATAAAAAACCAGGAAGTACATTGCAGAAACTGTTGATTTATATGTTAATGTTTCTTTCTTTGTCATTAATGCATCTCTATAGTTCACATGCTCTTTTGTATGCATGACATGTAATTTTCATTATGAATTTCAGATTTCAAAACAGCTTGGCTGTAAAAAAAATCCAGCAGCTTATAACATTACAGCTGCATGTAGTGGATTTATCTTTGGTTTAATATCAGCTGCTAGTCACATTAGGGGTATGAATCAGTTACTTTTTGTTGAATTAAGGTTATAATATCTCCTAAATGTTGTAAATAATTTGTTCATTTTATGAATGCAGGAGCAGCATTTCAAAATGTTCTTGTAATCGGAACTGATGCTCTTTCGAGATATATCGATTGGACCGACAGAAGTTCATGTATTCTGTTTGGAGATGCTGCTGGTGCTATTCTAGTACAGGTAACTCTTTACCTTCCTCAGTGTTGACAAACAAAAGTGGCTAACTATACCATGTTTATGGTTTTCATCATAGTAAATAGGGTTTTAACATAGTGAAAAAAAATTGATTTATTTTCATTGAGATTTAAATGGAACTGATTTTGTATAAATTTGTAGCATTGTTCTGATGTTATATATGTTTACATTGCAGGCGTGCAACTACGAGGAAGATTGTTTATTTAGTTTTGATTTGAATAGTGATGGTGATGGATATATGTATGTACTCCTTACCTTTGCAGTATCGACATTTCTAATCAAAGGCGTGTCCGGTGATATATGTGATTACATTAAATTAGTTAATTTTTTTTAATTTTTTTATCAGTGTCAACGTGTAAGTGTTGCGTCCAATGTATATGTGTCAGTGCTTCGTAGTTTCTTACACAGACATGCACATTGTTACGTGTTATGTGATAAACCATAGTTTCGCTTCATGTAGGCATCTGAATGCAGCATATAAAGAAGAAGGGGCTAATAATGCATCAGACTCAATTAAGGGTGAGTTGGACTTTCCTCCAAAGAAGTATTCATATTCATGCATACATATGAATGGCAAAGTAGTGTTTAAATTTGCTATACAGAGTGTGCCAAATTCAATTGAGTCAGCACTTCAAAAGGCTGGTCTACCTGCATCCAGCATTGATTGGTTACTTCTCCATCAGGTAAGGACCAAAAATAAATTTCTCTAAATTTAAGTGACCAAAACTTTTTTTTATGATTAAAACCTAAAAGTGATATACCATATAGTAATATATTTGATTAGGGAAAAAGGTTGGTTACACCATGCTAATAATTCAGTATTTACTTGTTGATAAATGTAGGCAAACCAAAGAATTATTGATGTAGTGGCAAACAAATTAGAATTCCCTCCAGAAAAAGTGATATCAAATGTGGCTGATTATGGTAATACAAGTGCAGCTTCCATTCCATTGGCTTTAGATGAATCAGTTAGAAGTGGAAAGATTAAGGAAGGACAAATTATTGCTGCTTCTGGCTTTGGTGCTGGTCTTACTTGGGGATCAGCTATTTTTCAATGGGGATAA

Protein sequence

>MS.gene053204.t1

MYLPTSLLHLPLLSPSISSKLVCFSAHNHDSQPPLPRLVSQGCKLVGCGSAVPTLEITNDELAKIVDTSDEWISVRTGIRKRRVLSGGENLTTLSVEAARKALEMAKVDPGDVDLILVCSSTSDDLFGTGPQISKQLGCKKNPAAYNITAACSGFIFGLISAASHIRGAAFQNVLVIGTDALSRYIDWTDRSSCILFGDAAGAILVQACNYEEDCLFSFDLNSDGDGYMHLNAAYKEEGANNASDSIKGELDFPPKKYSYSCIHMNGKVVFKFAIQSVPNSIESALQKAGLPASSIDWLLLHQANQRIIDVVANKLEFPPEKVISNVADYGNTSAASIPLALDESVRSGKIKEGQIIAASGFGAGLTWGSAIFQWG