AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene83828

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene83828.t1 MTR_3g025900 90.530 623 55 1 12 634 2 620 0.0 1130
MS.gene83828.t1 MTR_7g013770 40.708 678 354 9 1 633 3 677 1.43e-171 504
MS.gene83828.t1 MTR_4g103540 38.104 538 306 8 117 633 160 691 4.21e-113 354
MS.gene83828.t1 MTR_8g021330 35.766 548 315 9 122 633 69 615 1.04e-101 322
MS.gene83828.t1 MTR_5g073450 28.549 641 421 14 14 626 6 637 9.31e-87 284
MS.gene83828.t1 MTR_1g090620 30.890 573 332 13 89 626 102 645 8.60e-85 279
MS.gene83828.t1 MTR_7g026630 35.349 430 265 6 206 622 221 650 8.56e-84 276
MS.gene83828.t1 MTR_1g057560 30.534 524 315 8 119 620 127 623 5.80e-82 271
MS.gene83828.t1 MTR_3g031130 33.560 441 276 6 195 626 191 623 3.82e-78 261
MS.gene83828.t1 MTR_6g033310 30.843 522 329 7 119 623 220 726 6.36e-77 260
MS.gene83828.t1 MTR_2g096230 30.147 544 344 11 86 623 69 582 8.28e-69 234
MS.gene83828.t1 MTR_5g073460 31.209 455 302 5 181 626 244 696 1.24e-68 237
MS.gene83828.t1 MTR_1g117090 28.980 559 339 9 119 627 123 673 2.75e-59 211
MS.gene83828.t1 MTR_4g062330 29.243 489 323 8 122 596 102 581 3.69e-59 209
MS.gene83828.t1 MTR_1g067460 26.731 520 338 9 123 620 101 599 6.64e-58 206
MS.gene83828.t1 MTR_1g067480 26.590 519 347 12 123 624 103 604 7.60e-57 202
MS.gene83828.t1 MTR_5g073620 27.397 438 279 8 189 616 281 689 1.98e-45 174
MS.gene83828.t1 MTR_5g073620 25.468 267 169 7 368 626 828 1072 1.00e-12 72.0
MS.gene83828.t1 MTR_5g074130 26.829 410 276 8 195 595 251 645 5.57e-35 141
MS.gene83828.t1 MTR_5g073480 28.975 283 200 1 189 471 253 534 8.94e-33 134
MS.gene83828.t1 MTR_3g464010 26.327 452 286 13 190 620 241 666 1.55e-31 130
MS.gene83828.t1 MTR_1g009620 25.214 468 318 9 184 630 211 667 3.07e-31 129
MS.gene83828.t1 MTR_4g008260 27.128 376 246 10 263 625 284 644 1.41e-25 112
MS.gene83828.t1 MTR_1g017910 26.087 368 246 10 249 594 297 660 1.55e-25 112
MS.gene83828.t1 MTR_5g073920 25.282 443 296 12 195 626 245 663 3.40e-25 111
MS.gene83828.t1 MTR_5g073770 31.034 174 118 1 189 360 194 367 6.92e-24 104
MS.gene83828.t1 MTR_5g093530 25.378 331 213 7 267 595 244 542 2.20e-20 95.9
MS.gene83828.t1 MTR_0229s0040 32.143 196 110 5 454 630 31 222 5.11e-19 87.0
MS.gene83828.t1 MTR_5g073780 28.736 174 117 3 458 625 54 226 5.49e-14 72.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene83828.t1 AT5G61010 41.331 646 359 8 1 633 1 639 1.77e-158 470
MS.gene83828.t1 AT5G61010 41.331 646 359 8 1 633 1 639 1.77e-158 470
MS.gene83828.t1 AT3G29400 37.311 662 361 13 14 633 9 658 1.12e-136 414
MS.gene83828.t1 AT5G50380 34.808 678 362 12 16 633 25 682 4.11e-126 388
MS.gene83828.t1 AT3G14090 35.634 536 302 8 122 622 86 613 2.68e-105 332
MS.gene83828.t1 AT1G72470 34.201 576 324 10 105 633 64 631 4.86e-95 305
MS.gene83828.t1 AT1G54090 33.275 571 332 8 108 631 54 622 2.92e-94 303
MS.gene83828.t1 AT5G03540 32.653 539 311 8 107 622 6 515 3.15e-90 290
MS.gene83828.t1 AT5G03540 31.641 591 345 12 57 622 74 630 1.26e-89 291
MS.gene83828.t1 AT5G03540 30.643 607 356 12 57 622 74 656 8.89e-87 285
MS.gene83828.t1 AT5G52340 31.191 529 325 9 107 622 121 623 4.32e-80 266
MS.gene83828.t1 AT5G58430 28.707 634 408 15 14 623 6 619 7.20e-79 263
MS.gene83828.t1 AT1G07000 28.793 646 370 17 14 623 6 597 4.54e-73 246
MS.gene83828.t1 AT5G13990 31.648 534 336 12 116 634 174 693 1.48e-69 239
MS.gene83828.t1 AT5G13150 31.070 486 303 8 165 627 173 649 5.95e-68 234
MS.gene83828.t1 AT1G07725 29.204 565 348 13 89 634 72 603 1.03e-66 229
MS.gene83828.t1 AT2G28640 30.814 516 321 11 120 626 94 582 6.55e-66 227
MS.gene83828.t1 AT5G59730 30.037 546 343 11 101 624 72 600 3.15e-65 226
MS.gene83828.t1 AT5G59730 30.037 546 343 11 101 624 72 600 4.62e-65 226
MS.gene83828.t1 AT3G09520 28.253 538 351 10 103 621 84 605 9.28e-64 222
MS.gene83828.t1 AT2G39380 28.046 517 346 8 123 624 107 612 5.54e-62 217
MS.gene83828.t1 AT3G55150 28.433 517 342 7 123 623 107 611 7.69e-59 209
MS.gene83828.t1 AT5G52350 28.150 508 328 10 140 633 102 586 2.98e-57 203
MS.gene83828.t1 AT3G09530 25.698 537 369 8 103 622 79 602 8.47e-52 189
MS.gene83828.t1 AT2G28650 29.567 416 279 6 206 620 152 554 9.38e-49 179
MS.gene83828.t1 AT4G31540 25.309 486 309 13 180 634 212 674 2.97e-32 133
MS.gene83828.t1 AT1G51640 24.945 453 294 14 203 626 196 631 4.92e-22 101

Find 83 sgRNAs with CRISPR-Local

Find 97 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTAATTTCTTTGGAGATTTC+TGG 0.100464 3.2:-15874929 MS.gene83828:CDS
TCTGAGTATTTAAAACTTCT+TGG 0.197194 3.2:-15876160 MS.gene83828:CDS
AAAACCCTATGTAATTTCTT+TGG 0.238723 3.2:-15874939 MS.gene83828:CDS
CATCGAAAATGTGCTTAAAT+TGG 0.243970 3.2:-15875678 MS.gene83828:CDS
GCCATATCTTCATCAGTTCT+AGG 0.258626 3.2:-15875751 MS.gene83828:CDS
ATCAAGGCACTTGTTGAATA+TGG 0.262018 3.2:-15875197 MS.gene83828:CDS
ACTTGACATGTATGAGGTTT+TGG 0.277794 3.2:-15875426 MS.gene83828:CDS
TTTGTTGCAAAGTTTGAGTT+AGG 0.281815 3.2:+15876125 None:intergenic
TCTTCGCGAAGTTCTTTATC+AGG 0.287927 3.2:+15874714 None:intergenic
CATCGACAATAAGAAGATTA+AGG 0.292606 3.2:+15875168 None:intergenic
TGGCCTCACCAAAATTTAAA+AGG 0.300130 3.2:+15875489 None:intergenic
CCAGGAAAACATTTATTTGA+TGG 0.305526 3.2:+15875260 None:intergenic
TCTTCACAGGTTGTGATCAT+AGG 0.324664 3.2:+15876403 None:intergenic
CACAAACTTCTAAGAAGCTT+TGG 0.327792 3.2:-15875335 MS.gene83828:CDS
TGAAGATAAGGTAATGAGTT+TGG 0.328772 3.2:-15876209 MS.gene83828:CDS
TTTCATCAATTGAACACAAT+TGG 0.334191 3.2:+15876278 None:intergenic
GTTCAATTGCTTGCAACTTA+AGG 0.341266 3.2:-15875085 MS.gene83828:CDS
GAAGTATACAAAACACAAAC+AGG 0.347813 3.2:-15874747 MS.gene83828:CDS
CAAAAGTTTGATTCTGTGAA+TGG 0.352739 3.2:-15876106 MS.gene83828:CDS
ATACACAATATCAACTCTAT+TGG 0.354741 3.2:+15875946 None:intergenic
CTCGAATCCATTTCTTTATC+CGG 0.355857 3.2:+15875636 None:intergenic
TCGCGAAGATCTACAAATAT+CGG 0.379075 3.2:-15874700 MS.gene83828:CDS
CTCTGAATTATCTCGAGGTT+CGG 0.392003 3.2:-15875519 MS.gene83828:CDS
TCCTAGAACTGATGAAGATA+TGG 0.393569 3.2:+15875750 None:intergenic
AGCGAGCAGTGCTATAGATT+TGG 0.401050 3.2:-15875849 MS.gene83828:CDS
ATTGTGTATGATGGATCATT+TGG 0.401464 3.2:-15875932 MS.gene83828:CDS
CATTCATTACATGGTTCAAA+AGG 0.407674 3.2:-15874973 MS.gene83828:CDS
ATCTATAGCACTGCTCGCTT+CGG 0.413945 3.2:+15875853 None:intergenic
CTTGGATTTGTTGCACAAGT+TGG 0.424158 3.2:+15875040 None:intergenic
TGAATCACCGGATAAAGAAA+TGG 0.440018 3.2:-15875643 MS.gene83828:CDS
AAGCAGATTCTCGGAGACTT+TGG 0.454981 3.2:-15875563 MS.gene83828:CDS
GAATCAAAAGACATATAATC+AGG 0.459827 3.2:+15875968 None:intergenic
GCTTAAATGTGTTGAAGATA+AGG 0.460156 3.2:-15876221 MS.gene83828:CDS
AGAGAAACAAAACTGATAAA+CGG 0.460482 3.2:+15875538 None:intergenic
TGAGAAGTGGATTAAGTATA+CGG 0.464454 3.2:-15874616 MS.gene83828:CDS
GTGTTCAATTGATGAAAGAA+AGG 0.466489 3.2:-15876272 MS.gene83828:CDS
CAGTTCTAGGAGAGAAGCCT+TGG 0.468878 3.2:-15875738 MS.gene83828:CDS
AAATTGTGTAAGCAGATTCT+CGG 0.469474 3.2:-15875572 MS.gene83828:CDS
ATTGTTCAGACGTATCTTGT+TGG 0.471926 3.2:-15875602 MS.gene83828:CDS
TTTGGTGAGGCCATAACAAT+GGG 0.474376 3.2:-15875479 MS.gene83828:CDS
TTGTTTACTTGACATGTATG+AGG 0.480736 3.2:-15875432 MS.gene83828:CDS
AGTGGCGTTGTTTGAATCAC+CGG 0.482832 3.2:-15875655 MS.gene83828:CDS
CACATGTTGATCTTCTTCAC+AGG 0.485970 3.2:+15876390 None:intergenic
GTTTGTTTCAAATTACCATC+AGG 0.487592 3.2:-15875780 MS.gene83828:CDS
CCGGTATAACTTCGGTAAGC+AGG 0.491544 3.2:+15874660 None:intergenic
GTCAAGGCTTGAGGATGAGT+TGG 0.492679 3.2:-15876026 MS.gene83828:CDS
AGCAACATCAGTGTATAACT+TGG 0.499600 3.2:+15875022 None:intergenic
TGTGTGCGTTCCCATTGTTA+TGG 0.501998 3.2:+15875469 None:intergenic
GAATGGAAATTTGAAGCATA+AGG 0.507338 3.2:-15876089 MS.gene83828:CDS
CCTGCTTACCGAAGTTATAC+CGG 0.507813 3.2:-15874660 MS.gene83828:CDS
TTGTTGCAAAGTTTGAGTTA+GGG 0.513478 3.2:+15876126 None:intergenic
CGTCTAACATTGATGAGAAG+TGG 0.516919 3.2:-15874629 MS.gene83828:CDS
AGAGTTGATATTGTGTATGA+TGG 0.520793 3.2:-15875941 MS.gene83828:CDS
GATGAATAACATTCATTACA+TGG 0.527155 3.2:-15874982 MS.gene83828:CDS
AATCTCCAAAGAAATTACAT+AGG 0.528067 3.2:+15874934 None:intergenic
TCATGACATATCTTGTAAGA+TGG 0.530309 3.2:+15875225 None:intergenic
ATCTCCAAAGAAATTACATA+GGG 0.535733 3.2:+15874935 None:intergenic
ATGAGTTTGGAGACTAATCA+TGG 0.537906 3.2:-15876196 MS.gene83828:CDS
TGGATCATTTGGTTCAATTG+AGG 0.538106 3.2:-15875921 MS.gene83828:CDS
TTCTGGCTTCGCCAACATGT+TGG 0.541758 3.2:-15874912 MS.gene83828:CDS
TTTGTATACTTCACCAAAAG+CGG 0.555253 3.2:+15874758 None:intergenic
GAAGCTATGAGAAGGTGACT+TGG 0.564885 3.2:-15874869 MS.gene83828:CDS
AATGTTAGACGAGTTTCTAC+CGG 0.566162 3.2:+15874641 None:intergenic
AGATATGGCAAAACTCCTGA+TGG 0.585596 3.2:+15875765 None:intergenic
AGTTGTTATGTCAAGGCTTG+AGG 0.587807 3.2:-15876035 MS.gene83828:CDS
TGTTTCTCTGAATTATCTCG+AGG 0.589153 3.2:-15875524 MS.gene83828:CDS
GCTGAAACATTCCAACATGT+TGG 0.601281 3.2:+15874901 None:intergenic
GATGCCTCGTGGAGCAGTGA+TGG 0.603136 3.2:-15875884 MS.gene83828:CDS
AGTACTTTCTGTGTTTAGTG+AGG 0.603239 3.2:-15874841 MS.gene83828:CDS
AGATGGTGAACACCTCCACC+AGG 0.608901 3.2:+15875242 None:intergenic
TGAAACTTCGACTGATCTTG+CGG 0.612837 3.2:-15875147 MS.gene83828:CDS
ATTGAGAAAGTACTCATCCA+AGG 0.612926 3.2:+15875721 None:intergenic
AGTTTCTACCGGTATAACTT+CGG 0.613307 3.2:+15874652 None:intergenic
AAAATGTGCTTAAATTGGAG+TGG 0.627109 3.2:-15875673 MS.gene83828:CDS
GCACAAGTTGGATTCTAGAG+TGG 0.627118 3.2:+15875052 None:intergenic
TTATGCTAGAAGCTATGAGA+AGG 0.634466 3.2:-15874877 MS.gene83828:CDS
ATATGTCATGAATTACATCA+AGG 0.636314 3.2:-15875213 MS.gene83828:CDS
GCCTCGTGGAGCAGTGATGG+TGG 0.654014 3.2:-15875881 MS.gene83828:CDS
TAGCACTGCTCGCTTCGGAT+CGG 0.659065 3.2:+15875858 None:intergenic
GCCACCATCACTGCTCCACG+AGG 0.692046 3.2:+15875880 None:intergenic
TATACAAAACACAAACAGGG+TGG 0.717618 3.2:-15874743 MS.gene83828:CDS
AAGTATACAAAACACAAACA+GGG 0.726191 3.2:-15874746 MS.gene83828:CDS
CTGTGAAGAAGATCAACATG+TGG 0.761131 3.2:-15876389 MS.gene83828:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATATTTTGTATCTTTTTCA+TGG - chr3.2:15876378-15876397 MS.gene83828:CDS 15.0%
! AAAACCCTATGTAATTTCTT+TGG - chr3.2:15876015-15876034 MS.gene83828:CDS 25.0%
! AAGTATACAAAACACAAACA+GGG - chr3.2:15876208-15876227 MS.gene83828:CDS 25.0%
! AATCTCCAAAGAAATTACAT+AGG + chr3.2:15876023-15876042 None:intergenic 25.0%
! AGAGAAACAAAACTGATAAA+CGG + chr3.2:15875419-15875438 None:intergenic 25.0%
! ATACACAATATCAACTCTAT+TGG + chr3.2:15875011-15875030 None:intergenic 25.0%
! ATATGTCATGAATTACATCA+AGG - chr3.2:15875741-15875760 MS.gene83828:CDS 25.0%
! ATCTCCAAAGAAATTACATA+GGG + chr3.2:15876022-15876041 None:intergenic 25.0%
! GAATCAAAAGACATATAATC+AGG + chr3.2:15874989-15875008 None:intergenic 25.0%
! GATGAATAACATTCATTACA+TGG - chr3.2:15875972-15875991 MS.gene83828:CDS 25.0%
! TTTCATCAATTGAACACAAT+TGG + chr3.2:15874679-15874698 None:intergenic 25.0%
!! AGTAAACAAAACAGTTTTTC+TGG + chr3.2:15875511-15875530 None:intergenic 25.0%
!! TCTGAGTATTTAAAACTTCT+TGG - chr3.2:15874794-15874813 MS.gene83828:CDS 25.0%
AAAATGTGCTTAAATTGGAG+TGG - chr3.2:15875281-15875300 MS.gene83828:CDS 30.0%
AAATTGTGTAAGCAGATTCT+CGG - chr3.2:15875382-15875401 MS.gene83828:CDS 30.0%
CAAAAGTTTGATTCTGTGAA+TGG - chr3.2:15874848-15874867 MS.gene83828:CDS 30.0%
CATCGAAAATGTGCTTAAAT+TGG - chr3.2:15875276-15875295 MS.gene83828:CDS 30.0%
CATCGACAATAAGAAGATTA+AGG + chr3.2:15875789-15875808 None:intergenic 30.0%
CATTCATTACATGGTTCAAA+AGG - chr3.2:15875981-15876000 MS.gene83828:CDS 30.0%
CCAGGAAAACATTTATTTGA+TGG + chr3.2:15875697-15875716 None:intergenic 30.0%
GAAGTATACAAAACACAAAC+AGG - chr3.2:15876207-15876226 MS.gene83828:CDS 30.0%
GCTTAAATGTGTTGAAGATA+AGG - chr3.2:15874733-15874752 MS.gene83828:CDS 30.0%
GTGTTCAATTGATGAAAGAA+AGG - chr3.2:15874682-15874701 MS.gene83828:CDS 30.0%
GTTTGTTTCAAATTACCATC+AGG - chr3.2:15875174-15875193 MS.gene83828:CDS 30.0%
TCATGACATATCTTGTAAGA+TGG + chr3.2:15875732-15875751 None:intergenic 30.0%
TGAAGATAAGGTAATGAGTT+TGG - chr3.2:15874745-15874764 MS.gene83828:CDS 30.0%
TTGTTTACTTGACATGTATG+AGG - chr3.2:15875522-15875541 MS.gene83828:CDS 30.0%
TTTGTATACTTCACCAAAAG+CGG + chr3.2:15876199-15876218 None:intergenic 30.0%
! CCATCAAATAAATGTTTTCC+TGG - chr3.2:15875694-15875713 MS.gene83828:CDS 30.0%
! GAATGGAAATTTGAAGCATA+AGG - chr3.2:15874865-15874884 MS.gene83828:CDS 30.0%
! GTAATTTCTTTGGAGATTTC+TGG - chr3.2:15876025-15876044 MS.gene83828:CDS 30.0%
! GTTTTGCGCCTTTTAAATTT+TGG - chr3.2:15875457-15875476 MS.gene83828:CDS 30.0%
! TCAAATAAATGTTTTCCTGG+TGG - chr3.2:15875697-15875716 MS.gene83828:CDS 30.0%
! TTGTTGCAAAGTTTGAGTTA+GGG + chr3.2:15874831-15874850 None:intergenic 30.0%
! TTTGTTGCAAAGTTTGAGTT+AGG + chr3.2:15874832-15874851 None:intergenic 30.0%
! TTTTGCAAGTTGTTATGTCA+AGG - chr3.2:15874912-15874931 MS.gene83828:CDS 30.0%
!! AAAGATTTTAGTACCGCTTT+TGG - chr3.2:15876183-15876202 MS.gene83828:CDS 30.0%
!! AGAGTTGATATTGTGTATGA+TGG - chr3.2:15875013-15875032 MS.gene83828:CDS 30.0%
!! ATTGTGTATGATGGATCATT+TGG - chr3.2:15875022-15875041 MS.gene83828:CDS 30.0%
!! GAAGTTGATTCTTTTGTTAG+AGG - chr3.2:15875589-15875608 MS.gene83828:CDS 30.0%
!! TGAGAAGTGGATTAAGTATA+CGG - chr3.2:15876338-15876357 MS.gene83828:CDS 30.0%
AATGTTAGACGAGTTTCTAC+CGG + chr3.2:15876316-15876335 None:intergenic 35.0%
AGCAACATCAGTGTATAACT+TGG + chr3.2:15875935-15875954 None:intergenic 35.0%
AGTACTTTCTGTGTTTAGTG+AGG - chr3.2:15876113-15876132 MS.gene83828:CDS 35.0%
AGTTTCTACCGGTATAACTT+CGG + chr3.2:15876305-15876324 None:intergenic 35.0%
ATGAGTTTGGAGACTAATCA+TGG - chr3.2:15874758-15874777 MS.gene83828:CDS 35.0%
ATTGTTCAGACGTATCTTGT+TGG - chr3.2:15875352-15875371 MS.gene83828:CDS 35.0%
CTCGAATCCATTTCTTTATC+CGG + chr3.2:15875321-15875340 None:intergenic 35.0%
GTTCAATTGCTTGCAACTTA+AGG - chr3.2:15875869-15875888 MS.gene83828:CDS 35.0%
TATACAAAACACAAACAGGG+TGG - chr3.2:15876211-15876230 MS.gene83828:CDS 35.0%
TCCTAGAACTGATGAAGATA+TGG + chr3.2:15875207-15875226 None:intergenic 35.0%
TCGCGAAGATCTACAAATAT+CGG - chr3.2:15876254-15876273 MS.gene83828:CDS 35.0%
TGAATCACCGGATAAAGAAA+TGG - chr3.2:15875311-15875330 MS.gene83828:CDS 35.0%
TGGCCTCACCAAAATTTAAA+AGG + chr3.2:15875468-15875487 None:intergenic 35.0%
TGTTTCTCTGAATTATCTCG+AGG - chr3.2:15875430-15875449 MS.gene83828:CDS 35.0%
TTATGCTAGAAGCTATGAGA+AGG - chr3.2:15876077-15876096 MS.gene83828:CDS 35.0%
! AATAAATGTTTTCCTGGTGG+AGG - chr3.2:15875700-15875719 MS.gene83828:CDS 35.0%
! ACTTGACATGTATGAGGTTT+TGG - chr3.2:15875528-15875547 MS.gene83828:CDS 35.0%
! ATCAAGGCACTTGTTGAATA+TGG - chr3.2:15875757-15875776 MS.gene83828:CDS 35.0%
! CACAAACTTCTAAGAAGCTT+TGG - chr3.2:15875619-15875638 MS.gene83828:CDS 35.0%
! TGAGTTGAGAAAAACTCTCT+TGG - chr3.2:15874643-15874662 MS.gene83828:CDS 35.0%
! TGGATCATTTGGTTCAATTG+AGG - chr3.2:15875033-15875052 MS.gene83828:CDS 35.0%
!! ATTGAGAAAGTACTCATCCA+AGG + chr3.2:15875236-15875255 None:intergenic 35.0%
AAAAAATCAACGATGCCTCG+TGG - chr3.2:15875059-15875078 MS.gene83828:CDS 40.0%
AGATATGGCAAAACTCCTGA+TGG + chr3.2:15875192-15875211 None:intergenic 40.0%
AGTTGTTATGTCAAGGCTTG+AGG - chr3.2:15874919-15874938 MS.gene83828:CDS 40.0%
CACATGTTGATCTTCTTCAC+AGG + chr3.2:15874567-15874586 None:intergenic 40.0%
CGTCTAACATTGATGAGAAG+TGG - chr3.2:15876325-15876344 MS.gene83828:CDS 40.0%
CTCTGAATTATCTCGAGGTT+CGG - chr3.2:15875435-15875454 MS.gene83828:CDS 40.0%
CTGTGAAGAAGATCAACATG+TGG - chr3.2:15874565-15874584 MS.gene83828:CDS 40.0%
GCCATATCTTCATCAGTTCT+AGG - chr3.2:15875203-15875222 MS.gene83828:CDS 40.0%
GCTGAAACATTCCAACATGT+TGG + chr3.2:15876056-15876075 None:intergenic 40.0%
TCTTCACAGGTTGTGATCAT+AGG + chr3.2:15874554-15874573 None:intergenic 40.0%
TCTTCGCGAAGTTCTTTATC+AGG + chr3.2:15876243-15876262 None:intergenic 40.0%
TGAAACTTCGACTGATCTTG+CGG - chr3.2:15875807-15875826 MS.gene83828:CDS 40.0%
TTTGGTGAGGCCATAACAAT+GGG - chr3.2:15875475-15875494 MS.gene83828:CDS 40.0%
! TTTTGGTGAGGCCATAACAA+TGG - chr3.2:15875474-15875493 MS.gene83828:CDS 40.0%
!! CTTGGATTTGTTGCACAAGT+TGG + chr3.2:15875917-15875936 None:intergenic 40.0%
!! GCGCCTTTTAAATTTTGGTG+AGG - chr3.2:15875462-15875481 MS.gene83828:CDS 40.0%
AAGCAGATTCTCGGAGACTT+TGG - chr3.2:15875391-15875410 MS.gene83828:CDS 45.0%
AGCGAGCAGTGCTATAGATT+TGG - chr3.2:15875105-15875124 MS.gene83828:CDS 45.0%
AGTGGCGTTGTTTGAATCAC+CGG - chr3.2:15875299-15875318 MS.gene83828:CDS 45.0%
ATCTATAGCACTGCTCGCTT+CGG + chr3.2:15875104-15875123 None:intergenic 45.0%
CCTGCTTACCGAAGTTATAC+CGG - chr3.2:15876294-15876313 MS.gene83828:CDS 45.0%
GAAGCTATGAGAAGGTGACT+TGG - chr3.2:15876085-15876104 MS.gene83828:CDS 45.0%
TGTGTGCGTTCCCATTGTTA+TGG + chr3.2:15875488-15875507 None:intergenic 45.0%
! GCACAAGTTGGATTCTAGAG+TGG + chr3.2:15875905-15875924 None:intergenic 45.0%
!!! GGTTTTGGAACTTCTAGCAG+TGG - chr3.2:15875543-15875562 MS.gene83828:CDS 45.0%
CCGGTATAACTTCGGTAAGC+AGG + chr3.2:15876297-15876316 None:intergenic 50.0%
GTCAAGGCTTGAGGATGAGT+TGG - chr3.2:15874928-15874947 MS.gene83828:CDS 50.0%
!! CAGTTCTAGGAGAGAAGCCT+TGG - chr3.2:15875216-15875235 MS.gene83828:CDS 50.0%
!! TTCTGGCTTCGCCAACATGT+TGG - chr3.2:15876042-15876061 MS.gene83828:CDS 50.0%
AGATGGTGAACACCTCCACC+AGG + chr3.2:15875715-15875734 None:intergenic 55.0%
TAGCACTGCTCGCTTCGGAT+CGG + chr3.2:15875099-15875118 None:intergenic 55.0%
GATGCCTCGTGGAGCAGTGA+TGG - chr3.2:15875070-15875089 MS.gene83828:CDS 60.0%
GCCACCATCACTGCTCCACG+AGG + chr3.2:15875077-15875096 None:intergenic 65.0%
GCCTCGTGGAGCAGTGATGG+TGG - chr3.2:15875073-15875092 MS.gene83828:CDS 65.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 15874536 15876440 15874536 ID=MS.gene83828
chr3.2 mRNA 15874536 15876440 15874536 ID=MS.gene83828.t1;Parent=MS.gene83828
chr3.2 exon 15874536 15876440 15874536 ID=MS.gene83828.t1.exon1;Parent=MS.gene83828.t1
chr3.2 CDS 15874536 15876440 15874536 ID=cds.MS.gene83828.t1;Parent=MS.gene83828.t1
Gene Sequence

>MS.gene83828

ATGGAAGAACATAAACCTATGATCACAACCTGTGAAGAAGATCAACATGTGGTTGCTGCAGCTCAACACATTATAAAAGCACTAGCTTCAAGCAAAACTGTCTCTAATGAGTTGAGAAAAACTCTCTTGGATCTTGAGTTCCAATTGTGTTCAATTGATGAAAGAAAGGAAAGTTGCATCAAACAATTAGAGATAAAGCTTAAATGTGTTGAAGATAAGGTAATGAGTTTGGAGACTAATCATGGAATCATATCTTCTTCTGAGTATTTAAAACTTCTTGGTGAAATTCAAACCCTAACTCAAACTTTGCAACAAAAGTTTGATTCTGTGAATGGAAATTTGAAGCATAAGGAACTTGTTCAAAGAGCTAATGAAATTTTGCAAGTTGTTATGTCAAGGCTTGAGGATGAGTTGGTTCAAATTCTTGTTAATCATAAGCAATATTTTGAGCCTGATTATATGTCTTTTGATTCCAATAGAGTTGATATTGTGTATGATGGATCATTTGGTTCAATTGAGGATGAAAAAATCAACGATGCCTCGTGGAGCAGTGATGGTGGCCGATCCGAAGCGAGCAGTGCTATAGATTTGGTGCATCATTCTGTACTTGAAGATCTCAAAAGCATTGCTAAAGCTATGTTTGTTTCAAATTACCATCAGGAGTTTTGCCATATCTTCATCAGTTCTAGGAGAGAAGCCTTGGATGAGTACTTTCTCAATCTAGAAATCGAAAAACTAAGCATCGAAAATGTGCTTAAATTGGAGTGGCGTTGTTTGAATCACCGGATAAAGAAATGGATTCGAGCGATGAAAGTCATTGTTCAGACGTATCTTGTTGGTGAGAAAAAATTGTGTAAGCAGATTCTCGGAGACTTTGGATCCGTTTATCAGTTTTGTTTCTCTGAATTATCTCGAGGTTCGGTTTTGCGCCTTTTAAATTTTGGTGAGGCCATAACAATGGGAACGCACACACCAGAAAAACTGTTTTGTTTACTTGACATGTATGAGGTTTTGGAACTTCTAGCAGTGGATATAGATATTCTGTTCATTGAAGAAGTTGATTCTTTTGTTAGAGGAGAATTTCACAAACTTCTAAGAAGCTTTGGTGATACTATAAAATCTACATTTTTTGTATTTAGAAATGCTATTGCAACAAATCCATCAAATAAATGTTTTCCTGGTGGAGGTGTTCACCATCTTACAAGATATGTCATGAATTACATCAAGGCACTTGTTGAATATGGTGATAGCCTTAATCTTCTTATTGTCGATGAAACTTCGACTGATCTTGCGGCTAGTGATGACAACGATGAAAATTCTACTCTCTCATGTTGTTCAATTGCTTGCAACTTAAGGCAAATCACTACCACTCTAGAATCCAACTTGTGCAACAAATCCAAGTTATACACTGATGTTGCTTTGCAACATATTTTCATGATGAATAACATTCATTACATGGTTCAAAAGGTTAAGTATTCTAAAACCCTATGTAATTTCTTTGGAGATTTCTGGCTTCGCCAACATGTTGGAATGTTTCAGCATTATGCTAGAAGCTATGAGAAGGTGACTTGGAGTGCAGTACTTTCTGTGTTTAGTGAGGAAAGTTTATCGAATTGTGTCGCGAAGAGAAAACTAAAGAAAAAATGCAAAGATTTTAGTACCGCTTTTGGTGAAGTATACAAAACACAAACAGGGTGGAGTGTACCTGATAAAGAACTTCGCGAAGATCTACAAATATCGGTTTCTCAGAAAGTGATTCCTGCTTACCGAAGTTATACCGGTAGAAACTCGTCTAACATTGATGAGAAGTGGATTAAGTATACGGTCGATGATCTACAATGTTATATTTTGTATCTTTTTCATGGTTCTCAAAAATCTTTGCAGCATTCTCAGCATAGAAAGTGA
Protein sequence

>MS.gene83828.t1

MEEHKPMITTCEEDQHVVAAAQHIIKALASSKTVSNELRKTLLDLEFQLCSIDERKESCIKQLEIKLKCVEDKVMSLETNHGIISSSEYLKLLGEIQTLTQTLQQKFDSVNGNLKHKELVQRANEILQVVMSRLEDELVQILVNHKQYFEPDYMSFDSNRVDIVYDGSFGSIEDEKINDASWSSDGGRSEASSAIDLVHHSVLEDLKSIAKAMFVSNYHQEFCHIFISSRREALDEYFLNLEIEKLSIENVLKLEWRCLNHRIKKWIRAMKVIVQTYLVGEKKLCKQILGDFGSVYQFCFSELSRGSVLRLLNFGEAITMGTHTPEKLFCLLDMYEVLELLAVDIDILFIEEVDSFVRGEFHKLLRSFGDTIKSTFFVFRNAIATNPSNKCFPGGGVHHLTRYVMNYIKALVEYGDSLNLLIVDETSTDLAASDDNDENSTLSCCSIACNLRQITTTLESNLCNKSKLYTDVALQHIFMMNNIHYMVQKVKYSKTLCNFFGDFWLRQHVGMFQHYARSYEKVTWSAVLSVFSEESLSNCVAKRKLKKKCKDFSTAFGEVYKTQTGWSVPDKELREDLQISVSQKVIPAYRSYTGRNSSNIDEKWIKYTVDDLQCYILYLFHGSQKSLQHSQHRK