AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene84298

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene84298.t1 MTR_2g086890 94.040 604 32 2 1 604 42 641 0.0 1119
MS.gene84298.t1 MTR_4g052400 50.886 621 246 20 1 604 49 627 1.99e-161 476
MS.gene84298.t1 MTR_4g052400 50.602 498 206 14 113 604 2 465 1.47e-126 381
MS.gene84298.t1 MTR_7g105430 39.604 606 284 25 1 562 37 604 3.85e-100 319
MS.gene84298.t1 MTR_3g051430 27.880 434 242 10 130 513 133 545 9.68e-34 137
MS.gene84298.t1 MTR_5g009750 27.446 368 236 8 51 403 65 416 1.30e-32 133
MS.gene84298.t1 MTR_5g092610 31.967 366 197 9 40 399 82 401 1.09e-30 127
MS.gene84298.t1 MTR_8g028230 24.090 357 250 3 44 399 44 380 2.04e-24 107
MS.gene84298.t1 MTR_2g023020 34.715 193 126 0 210 402 175 367 1.70e-23 105
MS.gene84298.t1 MTR_8g028230 28.261 230 164 1 171 399 110 339 2.04e-22 101
MS.gene84298.t1 MTR_8g028230 29.004 231 161 3 171 399 37 266 2.70e-22 100
MS.gene84298.t1 MTR_8g028230 29.004 231 161 3 171 399 64 293 3.16e-22 100
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene84298.t1 AT3G11590 41.803 488 254 14 1 473 45 517 4.15e-88 286
MS.gene84298.t1 AT3G11590 43.944 355 185 8 124 473 10 355 1.45e-67 227
MS.gene84298.t1 AT5G22310 32.394 426 182 12 53 469 81 409 7.12e-41 155
MS.gene84298.t1 AT1G50660 37.245 196 123 0 205 400 233 428 6.30e-36 144
MS.gene84298.t1 AT3G20350 38.947 190 114 1 212 399 215 404 4.84e-31 129
MS.gene84298.t1 AT5G41620 26.872 227 164 1 178 402 28 254 1.02e-18 89.7
MS.gene84298.t1 AT5G41620 26.872 227 164 1 178 402 70 296 1.05e-18 90.1
MS.gene84298.t1 AT5G41620 26.872 227 164 1 178 402 70 296 1.05e-18 90.1
MS.gene84298.t1 AT5G41620 26.872 227 164 1 178 402 187 413 1.15e-18 90.5
MS.gene84298.t1 AT1G64180 28.033 239 155 5 174 410 175 398 1.12e-16 84.0
MS.gene84298.t1 AT2G46250 28.218 202 126 3 177 378 152 334 3.01e-12 69.7
MS.gene84298.t1 AT2G46250 28.218 202 126 3 177 378 61 243 6.67e-12 68.2

Find 85 sgRNAs with CRISPR-Local

Find 125 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAAAGGGCTAAAGAGATTT+TGG 0.212294 2.2:-11907509 MS.gene84298:CDS
TCAATCTATTGAATTGAATA+TGG 0.239027 2.2:-11907086 MS.gene84298:CDS
CCACTTTCTTTATCAAAATC+TGG 0.249092 2.2:+11906746 None:intergenic
CCACAATTCTTCTTGCGTTT+TGG 0.249753 2.2:+11907961 None:intergenic
GTTTCAATTGATAAAGATAT+AGG 0.289690 2.2:-11906995 MS.gene84298:CDS
TAGACTCATAATAGGCTTAT+AGG 0.291883 2.2:+11906787 None:intergenic
GAATTGATCGATTTGGTTGC+GGG 0.324724 2.2:+11907777 None:intergenic
TTTCAATTGATAAAGATATA+GGG 0.337013 2.2:-11906994 MS.gene84298:CDS
TCGTTCTTCGCGCAAAATAT+CGG 0.342669 2.2:+11907363 None:intergenic
GAAAACTTGCTGCTACACTA+TGG 0.343354 2.2:-11908997 MS.gene84298:CDS
GCTTTGCATTGTTCACGTTC+TGG 0.344057 2.2:-11909061 MS.gene84298:CDS
GGAATCAATGAAAAGTAATA+AGG 0.347161 2.2:-11908939 MS.gene84298:CDS
AAGTTCAAAGTCACCTTCTA+TGG 0.349666 2.2:-11909116 MS.gene84298:CDS
GATTCCTTCTTGATCCTTGA+AGG 0.350174 2.2:+11908956 None:intergenic
TTTGTTGATCCCTGCTTTAG+AGG 0.354642 2.2:-11908644 MS.gene84298:CDS
CATGAAGATTTCCAAAGAAA+TGG 0.357190 2.2:-11907581 MS.gene84298:CDS
ATACTCAATATTGTTCTGAT+TGG 0.361199 2.2:+11907738 None:intergenic
TGGTCTCTTAGACTCATAAT+AGG 0.362914 2.2:+11906779 None:intergenic
CTTGAATGAATTGATCGATT+TGG 0.380451 2.2:+11907770 None:intergenic
AGAGGAAAATGCCCTGGCTT+TGG 0.385167 2.2:-11906687 MS.gene84298:CDS
CAAAATCTGGAAATGATATA+TGG 0.386837 2.2:+11906759 None:intergenic
AATTCGAGAAGAAGTTGAAA+AGG 0.392229 2.2:-11907407 MS.gene84298:CDS
TCAATGATTTAACTCCTTCA+AGG 0.406907 2.2:-11908970 MS.gene84298:CDS
TGCTTTAGAGGCATGGATGC+TGG 0.415340 2.2:-11908632 MS.gene84298:CDS
TCTATCTTCTCCAACACCTT+TGG 0.426390 2.2:+11907465 None:intergenic
TAGTAATTTACCTCTGAGAA+AGG 0.428067 2.2:+11908845 None:intergenic
TGGCTTCTGAGAGCTTCATA+TGG 0.428417 2.2:+11907338 None:intergenic
GGAAAATGCCCTGGCTTTGG+AGG 0.439312 2.2:-11906684 MS.gene84298:CDS
TGAGTTTGAGGTACATTGAT+GGG 0.446281 2.2:-11906715 MS.gene84298:CDS
TTTCTCTTCAAATTGATACT+TGG 0.446447 2.2:+11907318 None:intergenic
CACAAGTAGAGGAAATGAAA+AGG 0.450688 2.2:-11907441 MS.gene84298:CDS
AAGAGCACGAAATGGAGAAA+AGG 0.454445 2.2:-11907525 MS.gene84298:CDS
GATGACATTGATGTTAATCC+AGG 0.456927 2.2:-11907226 MS.gene84298:CDS
AGAGCACGAAATGGAGAAAA+GGG 0.460107 2.2:-11907524 MS.gene84298:CDS
ACAAAAGGTATTGAAGTTGA+TGG 0.461588 2.2:-11908707 MS.gene84298:CDS
AGCATCCATGCCTCTAAAGC+AGG 0.462938 2.2:+11908634 None:intergenic
TATCATGTCCCTCCAAAGCC+AGG 0.466896 2.2:+11906675 None:intergenic
GTTATGTAGATCAGTGTTGT+TGG 0.468843 2.2:-11908897 MS.gene84298:CDS
ACCACAAAAGTTAGATCCAT+TGG 0.471476 2.2:-11908873 MS.gene84298:CDS
TTGAAGAGGAAAAGATTGCT+TGG 0.472224 2.2:-11907702 MS.gene84298:CDS
AAGGTAAAGCAGAGAACAAA+AGG 0.472992 2.2:-11908722 MS.gene84298:CDS
GAAGAATTGTGGTAAATGTA+AGG 0.474371 2.2:-11907950 MS.gene84298:CDS
AGAAATAAAGAAGAAGAGAA+AGG 0.475340 2.2:-11907250 MS.gene84298:CDS
TGGAGTCAAGAACCGTCTTA+AGG 0.477784 2.2:-11907926 MS.gene84298:CDS
TTGAATTTGAGAAGAAGCTA+AGG 0.484393 2.2:-11907624 MS.gene84298:CDS
TTGAGTTTGAGGTACATTGA+TGG 0.490634 2.2:-11906716 MS.gene84298:CDS
TTATGTAGATCAGTGTTGTT+GGG 0.494159 2.2:-11908896 MS.gene84298:CDS
TGATCCCTGCTTTAGAGGCA+TGG 0.494678 2.2:-11908639 MS.gene84298:CDS
ATTTCTTTCTTCTCTTTCAA+AGG 0.498272 2.2:+11909034 None:intergenic
TTGCAATGCTGATTTAATAG+AGG 0.498526 2.2:-11908609 MS.gene84298:intron
TACATTGAAGAAGCTTCTAA+AGG 0.509779 2.2:-11907884 MS.gene84298:CDS
AATTGTGGTAAATGTAAGGT+TGG 0.511853 2.2:-11907946 MS.gene84298:CDS
ATTGTCGAAAGAGCACGAAA+TGG 0.515021 2.2:-11907533 MS.gene84298:CDS
TGATGATGAGTTGCCATAGA+AGG 0.520762 2.2:+11909103 None:intergenic
TGAATTGATCGATTTGGTTG+CGG 0.523191 2.2:+11907776 None:intergenic
TTGAGGTACATTGATGGGGA+AGG 0.529666 2.2:-11906710 MS.gene84298:CDS
GAGCAGCATGCCCCTCATCT+TGG 0.529885 2.2:-11907824 MS.gene84298:CDS
ACAAGTAGAGGAAATGAAAA+GGG 0.531779 2.2:-11907440 MS.gene84298:CDS
AGATGATAAAGAAGAAAATG+AGG 0.536416 2.2:-11906816 MS.gene84298:CDS
AAAACTTGCTGCTACACTAT+GGG 0.545934 2.2:-11908996 MS.gene84298:CDS
AACTCCTTCAAGGATCAAGA+AGG 0.548905 2.2:-11908960 MS.gene84298:CDS
GGGAAGTATTTGCTTCAACA+AGG 0.569289 2.2:-11906951 MS.gene84298:CDS
GTACATTGATGGGGAAGGAG+AGG 0.569685 2.2:-11906705 MS.gene84298:CDS
CCAAAACGCAAGAAGAATTG+TGG 0.584387 2.2:-11907961 MS.gene84298:CDS
GGAAGTATTTGCTTCAACAA+GGG 0.586753 2.2:-11906950 MS.gene84298:CDS
GATGATAAAGAAGAAAATGA+GGG 0.588141 2.2:-11906815 MS.gene84298:CDS
GATGAATTAGCCAAAGGTGT+TGG 0.590367 2.2:-11907475 MS.gene84298:CDS
AGAAGATAGATCACAAGTAG+AGG 0.595577 2.2:-11907452 MS.gene84298:CDS
ACAATACACTAGCACCTATG+TGG 0.597614 2.2:-11909144 MS.gene84298:CDS
GAGTTTGAGGTACATTGATG+GGG 0.599467 2.2:-11906714 MS.gene84298:CDS
CGTTACTCATAGCCAAGATG+AGG 0.599564 2.2:+11907812 None:intergenic
GAAAATGCCCTGGCTTTGGA+GGG 0.600285 2.2:-11906683 MS.gene84298:CDS
GGAAGGAGAGGAAAATGCCC+TGG 0.603191 2.2:-11906693 MS.gene84298:CDS
TCTGAGAAAGGACTAACCAA+TGG 0.604769 2.2:+11908857 None:intergenic
AGGAAAGAGACAAAGTTGAG+AGG 0.605019 2.2:-11908919 MS.gene84298:CDS
GTTACTCATAGCCAAGATGA+GGG 0.620249 2.2:+11907813 None:intergenic
AATTTGAGAAGAAGCTAAGG+AGG 0.621879 2.2:-11907621 MS.gene84298:CDS
GCATCCATGCCTCTAAAGCA+GGG 0.626695 2.2:+11908635 None:intergenic
ATGACATTGATGTTAATCCA+GGG 0.627474 2.2:-11907225 MS.gene84298:CDS
ATCATGTCCCTCCAAAGCCA+GGG 0.630793 2.2:+11906676 None:intergenic
GTTTGTGATGAATTAGCCAA+AGG 0.638876 2.2:-11907481 MS.gene84298:CDS
ATTGGTTAGTCCTTTCTCAG+AGG 0.645866 2.2:-11908855 MS.gene84298:intron
CGTCTTAAGGAAGCTAAAAG+CGG 0.687525 2.2:-11907913 MS.gene84298:CDS
TTACTCATAGCCAAGATGAG+GGG 0.694561 2.2:+11907814 None:intergenic
AGAAAGAGAGAAGATTCGCG+AGG 0.695830 2.2:-11907671 MS.gene84298:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATAATCAATTAGAAATT+TGG - chr2.2:11907237-11907256 MS.gene84298:CDS 10.0%
!! TTAGTTAATCTAATAAAAAA+TGG + chr2.2:11907301-11907320 None:intergenic 10.0%
!!! AAATCAATTGAATTTATTTT+TGG - chr2.2:11908958-11908977 MS.gene84298:CDS 10.0%
!!! TTTTTTTACAAATATGATTA+AGG - chr2.2:11907068-11907087 MS.gene84298:CDS 10.0%
!! ATCATATTTGTAAAAAAAAC+AGG + chr2.2:11907066-11907085 None:intergenic 15.0%
!! TTTCAATTGATAAAGATATA+GGG - chr2.2:11908815-11908834 MS.gene84298:intron 15.0%
!!! CATCTATACTTATTTATTTT+TGG - chr2.2:11907768-11907787 MS.gene84298:CDS 15.0%
!! AATAAACTTTGTTAGTTCAA+TGG - chr2.2:11907028-11907047 MS.gene84298:CDS 20.0%
!! GTTTCAATTGATAAAGATAT+AGG - chr2.2:11908814-11908833 MS.gene84298:intron 20.0%
!! TAATATGTTAAGTGTATGTT+TGG + chr2.2:11907534-11907553 None:intergenic 20.0%
!! TACAAATAGTACTAAAAAGA+AGG - chr2.2:11908885-11908904 MS.gene84298:CDS 20.0%
!! TCAATCTATTGAATTGAATA+TGG - chr2.2:11908723-11908742 MS.gene84298:intron 20.0%
!!! CTATTTGAACAAAACATTTT+TGG - chr2.2:11908633-11908652 MS.gene84298:CDS 20.0%
!!! TACTTATTTATTTTTGGTCA+CGG - chr2.2:11907774-11907793 MS.gene84298:CDS 20.0%
! AGAAATAAAGAAGAAGAGAA+AGG - chr2.2:11908559-11908578 MS.gene84298:intron 25.0%
! AGATGATAAAGAAGAAAATG+AGG - chr2.2:11908993-11909012 MS.gene84298:CDS 25.0%
! ATACTCAATATTGTTCTGAT+TGG + chr2.2:11908074-11908093 None:intergenic 25.0%
! ATGACAAAAAAAGTTACAAG+TGG - chr2.2:11908749-11908768 MS.gene84298:intron 25.0%
! ATTTCTTTCTTCTCTTTCAA+AGG + chr2.2:11906778-11906797 None:intergenic 25.0%
! CAAAATCTGGAAATGATATA+TGG + chr2.2:11909053-11909072 None:intergenic 25.0%
! GATGATAAAGAAGAAAATGA+GGG - chr2.2:11908994-11909013 MS.gene84298:CDS 25.0%
! GGAATCAATGAAAAGTAATA+AGG - chr2.2:11906870-11906889 MS.gene84298:CDS 25.0%
! TTGAGAAGTGAAAAGTAAAA+TGG + chr2.2:11907706-11907725 None:intergenic 25.0%
! TTTCTCTTCAAATTGATACT+TGG + chr2.2:11908494-11908513 None:intergenic 25.0%
!! TTTTATGTTCTCCATTTCTT+TGG + chr2.2:11908242-11908261 None:intergenic 25.0%
!!! AGAAGATCTTTTAAAGATTG+GGG - chr2.2:11908838-11908857 MS.gene84298:intron 25.0%
!!! GAGAAGATCTTTTAAAGATT+GGG - chr2.2:11908837-11908856 MS.gene84298:intron 25.0%
AATTCGAGAAGAAGTTGAAA+AGG - chr2.2:11908402-11908421 MS.gene84298:intron 30.0%
AATTGTGGTAAATGTAAGGT+TGG - chr2.2:11907863-11907882 MS.gene84298:CDS 30.0%
ACAAGTAGAGGAAATGAAAA+GGG - chr2.2:11908369-11908388 MS.gene84298:intron 30.0%
ACTAAAAAGAAGGACTTTGA+TGG - chr2.2:11908895-11908914 MS.gene84298:CDS 30.0%
ATGACATTGATGTTAATCCA+GGG - chr2.2:11908584-11908603 MS.gene84298:intron 30.0%
CATGAAGATTTCCAAAGAAA+TGG - chr2.2:11908228-11908247 MS.gene84298:intron 30.0%
CCACTTTCTTTATCAAAATC+TGG + chr2.2:11909066-11909085 None:intergenic 30.0%
CTTGAATGAATTGATCGATT+TGG + chr2.2:11908042-11908061 None:intergenic 30.0%
GAAGAATTGTGGTAAATGTA+AGG - chr2.2:11907859-11907878 MS.gene84298:CDS 30.0%
GTATCACTATTCTTGATAGA+AGG + chr2.2:11907731-11907750 None:intergenic 30.0%
TACATTGAAGAAGCTTCTAA+AGG - chr2.2:11907925-11907944 MS.gene84298:CDS 30.0%
TAGACTCATAATAGGCTTAT+AGG + chr2.2:11909025-11909044 None:intergenic 30.0%
TCAATGATTTAACTCCTTCA+AGG - chr2.2:11906839-11906858 MS.gene84298:CDS 30.0%
TTAGAGCTTCAACAAAATCA+CGG - chr2.2:11907476-11907495 MS.gene84298:CDS 30.0%
TTGAATTTGAGAAGAAGCTA+AGG - chr2.2:11908185-11908204 MS.gene84298:intron 30.0%
! CTCTTTCGACAATTTTGAAT+AGG + chr2.2:11908269-11908288 None:intergenic 30.0%
! TAGTAATTTACCTCTGAGAA+AGG + chr2.2:11906967-11906986 None:intergenic 30.0%
! TTATGTAGATCAGTGTTGTT+GGG - chr2.2:11906913-11906932 MS.gene84298:CDS 30.0%
! TTTGATTGTCACACAGTTTT+TGG - chr2.2:11907394-11907413 MS.gene84298:CDS 30.0%
!! ACAAAAGGTATTGAAGTTGA+TGG - chr2.2:11907102-11907121 MS.gene84298:CDS 30.0%
!! CCAGATTTTGATAAAGAAAG+TGG - chr2.2:11909063-11909082 MS.gene84298:CDS 30.0%
!! GGAGAAGATCTTTTAAAGAT+TGG - chr2.2:11908836-11908855 MS.gene84298:intron 30.0%
!! TTGCAATGCTGATTTAATAG+AGG - chr2.2:11907200-11907219 MS.gene84298:CDS 30.0%
!! TTTGAACTTGTTTTCCACAT+AGG + chr2.2:11906682-11906701 None:intergenic 30.0%
!!! TGAGAATATTCCACTTTTTG+AGG - chr2.2:11908783-11908802 MS.gene84298:intron 30.0%
AAGGTAAAGCAGAGAACAAA+AGG - chr2.2:11907087-11907106 MS.gene84298:CDS 35.0%
AAGTTCAAAGTCACCTTCTA+TGG - chr2.2:11906693-11906712 MS.gene84298:CDS 35.0%
AATTTGAGAAGAAGCTAAGG+AGG - chr2.2:11908188-11908207 MS.gene84298:intron 35.0%
ACCACAAAAGTTAGATCCAT+TGG - chr2.2:11906936-11906955 MS.gene84298:CDS 35.0%
AGAAGATAGATCACAAGTAG+AGG - chr2.2:11908357-11908376 MS.gene84298:intron 35.0%
CACAAGTAGAGGAAATGAAA+AGG - chr2.2:11908368-11908387 MS.gene84298:intron 35.0%
GATGACATTGATGTTAATCC+AGG - chr2.2:11908583-11908602 MS.gene84298:intron 35.0%
GTTATGTAGATCAGTGTTGT+TGG - chr2.2:11906912-11906931 MS.gene84298:CDS 35.0%
GTTTGTGATGAATTAGCCAA+AGG - chr2.2:11908328-11908347 MS.gene84298:intron 35.0%
TGAATTTGGCAAAAACACGT+TGG + chr2.2:11907506-11907525 None:intergenic 35.0%
TGGTCTCTTAGACTCATAAT+AGG + chr2.2:11909033-11909052 None:intergenic 35.0%
TGTTAAGTGTATGTTTGGAC+CGG + chr2.2:11907529-11907548 None:intergenic 35.0%
TTGAAGAGGAAAAGATTGCT+TGG - chr2.2:11908107-11908126 MS.gene84298:intron 35.0%
! ACCAATGGATCTAACTTTTG+TGG + chr2.2:11906940-11906959 None:intergenic 35.0%
! ACTCTTTTTGCCTCAAAAAG+TGG + chr2.2:11908796-11908815 None:intergenic 35.0%
! GAAAAGGGCTAAAGAGATTT+TGG - chr2.2:11908300-11908319 MS.gene84298:intron 35.0%
! TGAGTTTGAGGTACATTGAT+GGG - chr2.2:11909094-11909113 MS.gene84298:CDS 35.0%
! TTGAGTTTGAGGTACATTGA+TGG - chr2.2:11909093-11909112 MS.gene84298:CDS 35.0%
!! AAAACTTGCTGCTACACTAT+GGG - chr2.2:11906813-11906832 MS.gene84298:CDS 35.0%
!! AGTTTTGATCAGCTTGAAAG+TGG - chr2.2:11908934-11908953 MS.gene84298:CDS 35.0%
!! GGAAGTATTTGCTTCAACAA+GGG - chr2.2:11908859-11908878 MS.gene84298:CDS 35.0%
!! TCTCATGAAGCATTTTGAAG+AGG - chr2.2:11908093-11908112 MS.gene84298:intron 35.0%
!! TGAATTGATCGATTTGGTTG+CGG + chr2.2:11908036-11908055 None:intergenic 35.0%
!!! AAGCTGTGTTTTTTGTAGCA+TGG + chr2.2:11906732-11906751 None:intergenic 35.0%
!!! GTGGTAAACTTTTGAGTTTG+AGG - chr2.2:11909082-11909101 MS.gene84298:CDS 35.0%
AACTCCTTCAAGGATCAAGA+AGG - chr2.2:11906849-11906868 MS.gene84298:CDS 40.0%
ACAATACACTAGCACCTATG+TGG - chr2.2:11906665-11906684 MS.gene84298:CDS 40.0%
ACTGCATCAGTGCATACATA+AGG + chr2.2:11907657-11907676 None:intergenic 40.0%
AGAGCACGAAATGGAGAAAA+GGG - chr2.2:11908285-11908304 MS.gene84298:intron 40.0%
AGGAAAGAGACAAAGTTGAG+AGG - chr2.2:11906890-11906909 MS.gene84298:CDS 40.0%
CCAAAACGCAAGAAGAATTG+TGG - chr2.2:11907848-11907867 MS.gene84298:CDS 40.0%
CGTCTTAAGGAAGCTAAAAG+CGG - chr2.2:11907896-11907915 MS.gene84298:CDS 40.0%
GATTCCTTCTTGATCCTTGA+AGG + chr2.2:11906856-11906875 None:intergenic 40.0%
GTTACTCATAGCCAAGATGA+GGG + chr2.2:11907999-11908018 None:intergenic 40.0%
TATGTTTGGACCGGTGAATT+TGG + chr2.2:11907520-11907539 None:intergenic 40.0%
TCCAGGGCTTAAAAAACTCA+AGG - chr2.2:11908600-11908619 MS.gene84298:intron 40.0%
TCGTTCTTCGCGCAAAATAT+CGG + chr2.2:11908449-11908468 None:intergenic 40.0%
TCTATCTTCTCCAACACCTT+TGG + chr2.2:11908347-11908366 None:intergenic 40.0%
TCTGAGAAAGGACTAACCAA+TGG + chr2.2:11906955-11906974 None:intergenic 40.0%
TTACTCATAGCCAAGATGAG+GGG + chr2.2:11907998-11908017 None:intergenic 40.0%
TTTGTTGATCCCTGCTTTAG+AGG - chr2.2:11907165-11907184 MS.gene84298:CDS 40.0%
! AAGAGCACGAAATGGAGAAA+AGG - chr2.2:11908284-11908303 MS.gene84298:intron 40.0%
! ATTGGTTAGTCCTTTCTCAG+AGG - chr2.2:11906954-11906973 MS.gene84298:CDS 40.0%
! ATTGTCGAAAGAGCACGAAA+TGG - chr2.2:11908276-11908295 MS.gene84298:intron 40.0%
! CCACAATTCTTCTTGCGTTT+TGG + chr2.2:11907851-11907870 None:intergenic 40.0%
! GAGTTTGAGGTACATTGATG+GGG - chr2.2:11909095-11909114 MS.gene84298:CDS 40.0%
! GATGAATTAGCCAAAGGTGT+TGG - chr2.2:11908334-11908353 MS.gene84298:intron 40.0%
! TGATGATGAGTTGCCATAGA+AGG + chr2.2:11906709-11906728 None:intergenic 40.0%
!! CGTGTTTTTGCCAAATTCAC+CGG - chr2.2:11907507-11907526 MS.gene84298:CDS 40.0%
!! GAAAACTTGCTGCTACACTA+TGG - chr2.2:11906812-11906831 MS.gene84298:CDS 40.0%
!! GAATTGATCGATTTGGTTGC+GGG + chr2.2:11908035-11908054 None:intergenic 40.0%
!! GGGAAGTATTTGCTTCAACA+AGG - chr2.2:11908858-11908877 MS.gene84298:CDS 40.0%
!!! ATTTTTGGTCACGGTTGAGA+AGG - chr2.2:11907783-11907802 MS.gene84298:CDS 40.0%
!!! CGCTTTTAGCTTCCTTAAGA+CGG + chr2.2:11907898-11907917 None:intergenic 40.0%
!!! TCCTTGAGTTTTTTAAGCCC+TGG + chr2.2:11908604-11908623 None:intergenic 40.0%
AGAAAGAGAGAAGATTCGCG+AGG - chr2.2:11908138-11908157 MS.gene84298:intron 45.0%
CGTTACTCATAGCCAAGATG+AGG + chr2.2:11908000-11908019 None:intergenic 45.0%
GCTTTGCATTGTTCACGTTC+TGG - chr2.2:11906748-11906767 MS.gene84298:CDS 45.0%
TGGAGTCAAGAACCGTCTTA+AGG - chr2.2:11907883-11907902 MS.gene84298:CDS 45.0%
TTGAGGTACATTGATGGGGA+AGG - chr2.2:11909099-11909118 MS.gene84298:CDS 45.0%
! TGGCTTCTGAGAGCTTCATA+TGG + chr2.2:11908474-11908493 None:intergenic 45.0%
AGAGGAAAATGCCCTGGCTT+TGG - chr2.2:11909122-11909141 MS.gene84298:CDS 50.0%
ATCATGTCCCTCCAAAGCCA+GGG + chr2.2:11909136-11909155 None:intergenic 50.0%
GTACATTGATGGGGAAGGAG+AGG - chr2.2:11909104-11909123 MS.gene84298:CDS 50.0%
TATCATGTCCCTCCAAAGCC+AGG + chr2.2:11909137-11909156 None:intergenic 50.0%
!! AGCATCCATGCCTCTAAAGC+AGG + chr2.2:11907178-11907197 None:intergenic 50.0%
!! GAAAATGCCCTGGCTTTGGA+GGG - chr2.2:11909126-11909145 MS.gene84298:CDS 50.0%
!! GCATCCATGCCTCTAAAGCA+GGG + chr2.2:11907177-11907196 None:intergenic 50.0%
!! TGATCCCTGCTTTAGAGGCA+TGG - chr2.2:11907170-11907189 MS.gene84298:CDS 50.0%
!! TGCTTTAGAGGCATGGATGC+TGG - chr2.2:11907177-11907196 MS.gene84298:CDS 50.0%
GGAAGGAGAGGAAAATGCCC+TGG - chr2.2:11909116-11909135 MS.gene84298:CDS 55.0%
!! GGAAAATGCCCTGGCTTTGG+AGG - chr2.2:11909125-11909144 MS.gene84298:CDS 55.0%
GAGCAGCATGCCCCTCATCT+TGG - chr2.2:11907985-11908004 MS.gene84298:intron 60.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 11906646 11909185 11906646 ID=MS.gene84298
chr2.2 mRNA 11906646 11909185 11906646 ID=MS.gene84298.t1;Parent=MS.gene84298
chr2.2 exon 11908856 11909185 11908856 ID=MS.gene84298.t1.exon1;Parent=MS.gene84298.t1
chr2.2 CDS 11908856 11909185 11908856 ID=cds.MS.gene84298.t1;Parent=MS.gene84298.t1
chr2.2 exon 11908610 11908741 11908610 ID=MS.gene84298.t1.exon2;Parent=MS.gene84298.t1
chr2.2 CDS 11908610 11908741 11908610 ID=cds.MS.gene84298.t1;Parent=MS.gene84298.t1
chr2.2 exon 11906646 11907998 11906646 ID=MS.gene84298.t1.exon3;Parent=MS.gene84298.t1
chr2.2 CDS 11906646 11907998 11906646 ID=cds.MS.gene84298.t1;Parent=MS.gene84298.t1
Gene Sequence

>MS.gene84298

ATGGGGAAGAAAAGTGGGTACAATACACTAGCACCTATGTGGAAAACAAGTTCAAAGTCACCTTCTATGGCAACTCATCATCACCATGCTACAAAAAACACAGCTTTGCATTGTTCACGTTCTGGATTACCTTTGAAAGAGAAGAAAGAAATTTCTGTGTCTGCTAGAAAACTTGCTGCTACACTATGGGAAATCAATGATTTAACTCCTTCAAGGATCAAGAAGGAATCAATGAAAAGTAATAAGGAAAGAGACAAAGTTGAGAGGTTATGTAGATCAGTGTTGTTGGGACCACAAAAGTTAGATCCATTGGTTAGTCCTTTCTCAGAGGTAAATTACTAAATTCATATAAAAGTTTTTAATTTTTATTTTTTCATTTGTGAATAAACTTTGTTAGTTCAATGGTGAAAATGAAATCCTGTTTTTTTTACAAATATGATTAAGGTAAAGCAGAGAACAAAAGGTATTGAAGTTGATGGCTGCAAAAGAAATGTGTCAGATTTATCTCAACAATTTCACTTTGTTGATCCCTGCTTTAGAGGCATGGATGCTGGTTGCAATGCTGATTTAATAGAGGTAAGTTTTGTAATGAATATAATCAATTAGAAATTTGGTACACATATTTCATTATGCTTAATCATCATATACTATACCATTTTTTATTAGATTAACTAATGATCAACATGATGATATGTTACAATAATAAAAATAGACACAAATTAGTTGTGAAGTTTTAAAATCTGTTGACTTTGATTGTCACACAGTTTTTGGTTGACAATGATACAATAGAATCACGTTGAACTACTGTGATTTTGACAAAAAGCTACAATTTAGAGCTTCAACAAAATCACGGCGTGCCAACGTGTTTTTGCCAAATTCACCGGTCCAAACATACACTTAACATATTATTATATATAAAAGTTAGTTATAATAGTGTTCAGTCAAGAAAAAAGTTAGTTATATTAGTTTGTTACACTAGTTAGTTGTTCTTCTTATTGACTATATAAACCTTATGTATGCACTGATGCAGTTCATTCTCTCATTATCAATATAATTTCCATTTTACTTTTCACTTCTCAATGCCTTCTATCAAGAATAGTGATACATATTAGATTATGATTTCATCTATACTTATTTATTTTTGGTCACGGTTGAGAAGGATCAAGTTAAACTATGTTGAAATGCAGAATGTTAGCAATAAGCCAAAACGCAAGAAGAATTGTGGTAAATGTAAGGTTGGAGTCAAGAACCGTCTTAAGGAAGCTAAAAGCGGCGTATCTACATTGAAGAAGCTTCTAAAGGTGTTAAGTCAAATTGTCGTTGAAGAGAAGCATTCGTTGAGCAGCATGCCCCTCATCTTGGCTATGAGTAACGAGCTTGATCTCGCCCGCAACCAAATCGATCAATTCATTCAAGAACAAAGCTCCAATCAGAACAATATTGAGTATCTCATGAAGCATTTTGAAGAGGAAAAGATTGCTTGGCAAAGAAGAGAAAGAGAGAAGATTCGCGAGGTGACAATGAGCATAGCGCAAGAGCTTGAATTTGAGAAGAAGCTAAGGAGGCAAACTGAGAGACTGAACATGAAGATTTCCAAAGAAATGGAGAACATAAAAGATTCCTATTCAAAATTGTCGAAAGAGCACGAAATGGAGAAAAGGGCTAAAGAGATTTTGGAGCAAGTTTGTGATGAATTAGCCAAAGGTGTTGGAGAAGATAGATCACAAGTAGAGGAAATGAAAAGGGAATCAGAGAAAATTCGAGAAGAAGTTGAAAAGGAGAGAGAAATGCTTCAGTTAGCCGATATTTTGCGCGAAGAACGAGTCCATATGAAGCTCTCAGAAGCCAAGTATCAATTTGAAGAGAAAAGTGCAATGCTAGAAATTCTAAGAAATGAGCTTGAGAACTTTATAAGAAATAAAGAAGAAGAGAAAGGTGATGACATTGATGTTAATCCAGGGCTTAAAAAACTCAAGGATCTTGAATTCTATTTGAACAAAACATTTTTGGAATTTCAAAATCTAGATGAAGATAACGATTCAATAGAGCATGAAGATGAGTCAGTTGAGAGTGATCTTCAATCTATTGAATTGAATATGGACAATGACAAAAAAAGTTACAAGTGGAATTATTCTTGTGAGAATATTCCACTTTTTGAGGCAAAAAGAGTTTCAATTGATAAAGATATAGGGAGAAGATCTTTTAAAGATTGGGGAAGTATTTGCTTCAACAAGGGAACTACAAATAGTACTAAAAAGAAGGACTTTGATGGTATAAATATTCAAGAAAGTTTTGATCAGCTTGAAAGTGGAAAATCAATTGAATTTATTTTTGGAGATGAAATACAAGATGATAAAGAAGAAAATGAGGGTTATACCTATAAGCCTATTATGAGTCTAAGAGACCATATATCATTTCCAGATTTTGATAAAGAAAGTGGTAAACTTTTGAGTTTGAGGTACATTGATGGGGAAGGAGAGGAAAATGCCCTGGCTTTGGAGGGACATGATATGAAGAAAGATTGTGCACGAAGAAAATAA
Protein sequence

>MS.gene84298.t1

MGKKSGYNTLAPMWKTSSKSPSMATHHHHATKNTALHCSRSGLPLKEKKEISVSARKLAATLWEINDLTPSRIKKESMKSNKERDKVERLCRSVLLGPQKLDPLVSPFSEVKQRTKGIEVDGCKRNVSDLSQQFHFVDPCFRGMDAGCNADLIENVSNKPKRKKNCGKCKVGVKNRLKEAKSGVSTLKKLLKVLSQIVVEEKHSLSSMPLILAMSNELDLARNQIDQFIQEQSSNQNNIEYLMKHFEEEKIAWQRREREKIREVTMSIAQELEFEKKLRRQTERLNMKISKEMENIKDSYSKLSKEHEMEKRAKEILEQVCDELAKGVGEDRSQVEEMKRESEKIREEVEKEREMLQLADILREERVHMKLSEAKYQFEEKSAMLEILRNELENFIRNKEEEKGDDIDVNPGLKKLKDLEFYLNKTFLEFQNLDEDNDSIEHEDESVESDLQSIELNMDNDKKSYKWNYSCENIPLFEAKRVSIDKDIGRRSFKDWGSICFNKGTTNSTKKKDFDGINIQESFDQLESGKSIEFIFGDEIQDDKEENEGYTYKPIMSLRDHISFPDFDKESGKLLSLRYIDGEGEENALALEGHDMKKDCARRK