AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene84420

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene84420.t1 MTR_0040s0140 96.813 251 8 0 1 251 6 256 0.0 512
MS.gene84420.t1 MTR_2g090255 79.365 252 51 1 1 251 1 252 1.88e-158 440
MS.gene84420.t1 MTR_5g076950 60.177 226 89 1 26 251 40 264 4.37e-98 287
MS.gene84420.t1 MTR_5g079950 51.304 230 112 0 22 251 28 257 8.29e-88 261
MS.gene84420.t1 MTR_7g061720 50.435 230 114 0 22 251 27 256 1.98e-87 260
MS.gene84420.t1 MTR_5g075320 48.996 249 125 1 3 251 5 251 5.23e-87 259
MS.gene84420.t1 MTR_2g097030 50.435 230 114 0 22 251 29 258 2.12e-86 258
MS.gene84420.t1 MTR_3g094060 50.000 246 121 1 6 251 10 253 7.26e-86 256
MS.gene84420.t1 MTR_3g064510 55.932 236 91 6 26 251 52 284 1.08e-85 257
MS.gene84420.t1 MTR_5g041700 50.000 244 120 1 8 251 6 247 2.41e-85 254
MS.gene84420.t1 MTR_3g435430 52.632 228 106 1 24 251 22 247 5.46e-85 253
MS.gene84420.t1 MTR_3g094040 52.889 225 104 1 27 251 31 253 7.02e-85 253
MS.gene84420.t1 MTR_4g081950 50.410 244 119 1 8 251 42 283 2.04e-84 253
MS.gene84420.t1 MTR_7g013140 49.794 243 117 2 7 249 11 248 3.10e-84 252
MS.gene84420.t1 MTR_3g466790 53.778 225 102 1 27 251 32 254 1.06e-83 250
MS.gene84420.t1 MTR_4g063975 48.438 256 124 2 4 251 1 256 1.18e-83 250
MS.gene84420.t1 MTR_3g466760 53.333 225 103 1 27 251 38 260 7.54e-83 248
MS.gene84420.t1 MTR_7g013150 48.347 242 120 2 8 249 14 250 1.09e-80 243
MS.gene84420.t1 MTR_7g011060 48.387 248 113 3 9 251 3 240 6.68e-80 240
MS.gene84420.t1 MTR_8g058990 50.667 225 109 1 24 248 27 249 7.16e-79 238
MS.gene84420.t1 MTR_8g464350 46.939 245 128 1 3 247 7 249 2.44e-77 234
MS.gene84420.t1 MTR_7g013120 51.316 228 108 2 24 250 26 251 3.01e-77 234
MS.gene84420.t1 MTR_4g124340 50.667 225 108 2 27 250 61 283 8.65e-77 234
MS.gene84420.t1 MTR_1g085460 49.356 233 114 3 20 249 23 254 5.93e-76 231
MS.gene84420.t1 MTR_7g111010 46.559 247 124 4 8 247 4 249 1.02e-74 228
MS.gene84420.t1 MTR_7g110990 49.554 224 109 3 27 247 12 234 2.26e-74 226
MS.gene84420.t1 MTR_6g012520 48.606 251 114 3 6 251 2 242 8.09e-73 223
MS.gene84420.t1 MTR_1g026020 43.697 238 127 4 16 249 18 252 1.77e-69 214
MS.gene84420.t1 MTR_5g011210 41.532 248 143 2 3 249 13 259 1.64e-67 209
MS.gene84420.t1 MTR_4g102450 43.983 241 133 2 8 247 17 256 3.84e-67 209
MS.gene84420.t1 MTR_0008s0120 51.852 108 52 0 141 248 88 195 4.34e-34 122
MS.gene84420.t1 MTR_0008s0120 40.244 82 49 0 3 84 8 89 1.34e-13 67.8
MS.gene84420.t1 MTR_6g012500 54.000 100 46 0 152 251 181 280 1.98e-33 122
MS.gene84420.t1 MTR_2g090270 31.429 245 140 9 18 249 26 255 1.18e-29 112
MS.gene84420.t1 MTR_2g090265 30.962 239 137 10 24 249 30 253 1.03e-27 107
MS.gene84420.t1 MTR_0122s0020 32.353 238 135 9 24 249 38 261 1.31e-27 107
MS.gene84420.t1 MTR_4g028640 31.439 264 145 12 3 247 13 259 9.08e-25 99.4
MS.gene84420.t1 MTR_0118s0070 29.004 231 136 11 32 247 53 270 9.34e-19 83.6
MS.gene84420.t1 MTR_0809s0010 29.600 250 142 13 13 247 35 265 2.76e-17 79.3
MS.gene84420.t1 MTR_0122s0020 32.597 181 97 8 24 193 38 204 4.22e-16 75.1
MS.gene84420.t1 MTR_5g013440 28.194 227 146 9 30 249 32 248 1.67e-13 68.6
MS.gene84420.t1 MTR_1g085365 51.786 56 27 0 196 251 4 59 2.60e-12 60.8
MS.gene84420.t1 MTR_4g075790 26.106 226 132 10 38 247 32 238 3.40e-12 65.1
MS.gene84420.t1 MTR_4g099370 25.200 250 168 9 5 247 8 245 4.26e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene84420.t1 AT4G38210 65.306 245 81 2 9 251 12 254 4.41e-119 340
MS.gene84420.t1 AT3G03220 57.522 226 95 1 26 251 39 263 1.80e-93 276
MS.gene84420.t1 AT3G55500 50.602 249 119 1 7 251 10 258 3.87e-89 265
MS.gene84420.t1 AT2G39700 48.207 251 130 0 1 251 5 255 9.27e-89 263
MS.gene84420.t1 AT5G02260 47.600 250 126 1 7 251 7 256 4.51e-88 262
MS.gene84420.t1 AT2G37640 49.402 251 119 1 9 251 10 260 8.59e-88 261
MS.gene84420.t1 AT5G05290 51.271 236 112 2 17 251 22 255 1.24e-85 255
MS.gene84420.t1 AT2G40610 50.201 249 121 3 4 251 7 253 3.31e-84 252
MS.gene84420.t1 AT1G69530 50.202 247 119 2 7 251 5 249 5.02e-84 251
MS.gene84420.t1 AT1G69530 50.202 247 119 2 7 251 5 249 5.02e-84 251
MS.gene84420.t1 AT5G56320 48.560 243 123 1 9 251 11 251 5.07e-84 251
MS.gene84420.t1 AT5G56320 48.560 243 123 1 9 251 11 251 5.07e-84 251
MS.gene84420.t1 AT2G37640 53.810 210 97 0 42 251 26 235 7.59e-84 250
MS.gene84420.t1 AT2G03090 52.632 228 106 1 24 251 27 252 1.19e-83 250
MS.gene84420.t1 AT5G56320 48.560 243 123 1 9 251 11 251 3.61e-83 251
MS.gene84420.t1 AT1G69530 50.413 242 116 2 7 246 5 244 4.79e-82 247
MS.gene84420.t1 AT2G28950 47.222 252 132 1 1 251 4 255 4.05e-81 244
MS.gene84420.t1 AT5G39280 51.327 226 106 2 24 249 51 272 7.46e-79 239
MS.gene84420.t1 AT5G39300 50.442 226 108 2 24 249 52 273 1.26e-77 236
MS.gene84420.t1 AT5G39270 50.885 226 107 2 24 249 55 276 6.95e-77 234
MS.gene84420.t1 AT5G39290 50.442 226 108 2 24 249 55 276 3.26e-76 232
MS.gene84420.t1 AT1G26770 48.207 251 127 2 1 251 1 248 5.25e-76 231
MS.gene84420.t1 AT1G26770 48.207 251 127 2 1 251 11 258 7.96e-76 231
MS.gene84420.t1 AT3G29030 46.768 263 118 5 1 251 1 253 1.30e-75 230
MS.gene84420.t1 AT1G62980 43.621 243 135 2 8 249 12 253 9.80e-74 225
MS.gene84420.t1 AT5G39260 43.922 255 128 4 1 249 14 259 3.55e-70 216
MS.gene84420.t1 AT4G01630 46.875 224 115 3 27 247 28 250 5.85e-70 216
MS.gene84420.t1 AT5G39310 48.661 224 110 3 27 249 90 309 1.40e-69 216
MS.gene84420.t1 AT1G20190 43.966 232 125 3 19 247 18 247 3.82e-69 213
MS.gene84420.t1 AT1G69530 44.130 247 104 3 7 251 5 219 2.04e-68 210
MS.gene84420.t1 AT1G69530 49.510 204 99 2 7 208 5 206 3.92e-67 208
MS.gene84420.t1 AT1G12560 43.443 244 133 4 7 247 15 256 6.07e-67 208
MS.gene84420.t1 AT3G15370 44.358 257 131 6 1 251 1 251 5.03e-66 206
MS.gene84420.t1 AT3G15370 40.767 287 128 8 1 251 1 281 2.32e-61 194
MS.gene84420.t1 AT1G20190 46.032 189 97 3 62 247 2 188 6.30e-59 185
MS.gene84420.t1 AT4G28250 32.365 241 132 11 24 249 33 257 2.76e-24 98.2
MS.gene84420.t1 AT2G20750 33.068 251 140 11 13 249 28 264 1.55e-23 96.3
MS.gene84420.t1 AT1G65680 29.839 248 143 9 17 247 35 268 2.21e-23 95.9
MS.gene84420.t1 AT4G28250 32.083 240 128 11 24 249 33 251 3.08e-22 92.4
MS.gene84420.t1 AT2G45110 30.172 232 135 11 30 247 36 254 7.41e-18 80.9
MS.gene84420.t1 AT1G65681 28.636 220 132 9 40 247 11 217 3.22e-17 78.2
MS.gene84420.t1 AT3G60570 25.483 259 159 10 10 249 11 254 1.12e-14 72.0
MS.gene84420.t1 AT2G20750 32.804 189 103 8 13 190 28 203 3.26e-14 70.1
MS.gene84420.t1 AT3G60570 25.792 221 136 9 42 249 1 206 2.30e-11 62.0
MS.gene84420.t1 AT4G17030 25.969 258 151 11 8 247 9 244 2.82e-11 62.4

Find 58 sgRNAs with CRISPR-Local

Find 91 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATTTCTGTCCTCCTAATTT+TGG 0.175976 4.1:+55985639 MS.gene84420:CDS
GCACCTCCAAACTGGCAATT+TGG 0.255098 4.1:+55986437 MS.gene84420:CDS
TAGAGATCCTTCTGTGTCTT+TGG 0.259434 4.1:-55985235 None:intergenic
TTTGGTCTCTCAGTTGATTA+TGG 0.289936 4.1:+55985657 MS.gene84420:CDS
GGATACCAATGGCAAGGAAT+TGG 0.318465 4.1:+55986318 MS.gene84420:CDS
GTTTGTCCAAATTGCCAGTT+TGG 0.334344 4.1:-55986443 None:intergenic
TCAACTGAGAGACCAAAATT+AGG 0.348503 4.1:-55985651 None:intergenic
GATACCAATGGCAAGGAATT+GGG 0.350848 4.1:+55986319 MS.gene84420:CDS
ACATCAGCCTTTGTCCTTTG+AGG 0.354377 4.1:+55986373 MS.gene84420:CDS
GACAACTCAAAATGTTCTCT+TGG 0.372662 4.1:-55985696 None:intergenic
GCAGAAGGAGCTTGTGGTTA+TGG 0.372980 4.1:+55985459 MS.gene84420:intron
ACAGAAGGATCTCTAATTAC+AGG 0.385780 4.1:+55985243 MS.gene84420:CDS
TTATTCCCGTTCAATATAGA+AGG 0.389617 4.1:+55985760 MS.gene84420:CDS
CAATTTGGACAAACATTTGA+AGG 0.398107 4.1:+55986452 MS.gene84420:CDS
TTGCTTACAAAGATCAAGAA+TGG 0.419745 4.1:+55985190 MS.gene84420:CDS
CAAGGAATTGGGGAATGAAT+TGG 0.429950 4.1:+55986330 MS.gene84420:CDS
ATCTACCTTCTATATTGAAC+GGG 0.431748 4.1:-55985765 None:intergenic
CAAGCATACACCACAAGATA+TGG 0.436575 4.1:-55985587 None:intergenic
ATAACTAATGTGGGGTTAGA+TGG 0.442300 4.1:+55986254 MS.gene84420:CDS
ACAATGTAGCACCTCCAAAC+TGG 0.451802 4.1:+55986429 MS.gene84420:CDS
ATTCCCCAATTCCTTGCCAT+TGG 0.501334 4.1:-55986323 None:intergenic
AAAGTGAAGGGATCTAGAAC+AGG 0.502893 4.1:+55986293 MS.gene84420:CDS
TGCATTTGCTGAAATTGCTA+AGG 0.506123 4.1:+55985725 MS.gene84420:CDS
TCTCAGTTGATTATGGTGGT+TGG 0.506701 4.1:+55985664 MS.gene84420:CDS
CAAGTTCTGATAACTAATGT+GGG 0.508543 4.1:+55986245 MS.gene84420:CDS
TCAAGTTCTGATAACTAATG+TGG 0.509065 4.1:+55986244 MS.gene84420:CDS
AGGACAAAGGCTGATGTTGA+AGG 0.517191 4.1:-55986367 None:intergenic
GATCTTCACAAAGCTAGCTA+TGG 0.521811 4.1:+55985483 MS.gene84420:CDS
CATATCTTGTGGTGTATGCT+TGG 0.525681 4.1:+55985588 MS.gene84420:CDS
GTCTTTGGCATAAGTTGCAG+TGG 0.528308 4.1:-55985220 None:intergenic
TATCTACCTTCTATATTGAA+CGG 0.536318 4.1:-55985766 None:intergenic
TGTCCAAATTGCCAGTTTGG+AGG 0.539604 4.1:-55986440 None:intergenic
GTGAAGTGTGAAAGAAGTGG+AGG 0.540916 4.1:+55986185 MS.gene84420:CDS
GCATTTGCTGAAATTGCTAA+GGG 0.541056 4.1:+55985726 MS.gene84420:CDS
TTTGAGGTAACTAGCAGCAC+TGG 0.546125 4.1:+55986389 MS.gene84420:CDS
TTCAACAGAGGGAGTACATG+TGG 0.560849 4.1:+55985537 MS.gene84420:CDS
AGCTATGGAAAACATAGTGT+TGG 0.560850 4.1:+55985498 MS.gene84420:CDS
GGGTTGAAATTCACAATGAG+TGG 0.572612 4.1:+55986206 MS.gene84420:CDS
GGTCTCTCAGTTGATTATGG+TGG 0.580447 4.1:+55985660 MS.gene84420:CDS
ATACCAATGGCAAGGAATTG+GGG 0.587228 4.1:+55986320 MS.gene84420:CDS
TCAACAGAGGGAGTACATGT+GGG 0.614475 4.1:+55985538 MS.gene84420:CDS
TAAAATCAAGTAGAGAAGTG+TGG 0.616273 4.1:-55985148 None:intergenic
TGAAGTGTGAAAGAAGTGGA+GGG 0.622177 4.1:+55986186 MS.gene84420:CDS
TGAAGGGATCTAGAACAGGA+TGG 0.625878 4.1:+55986297 MS.gene84420:CDS
ACTGAGAGACCAAAATTAGG+AGG 0.626412 4.1:-55985648 None:intergenic
CAGGATGGATACCAATGGCA+AGG 0.630186 4.1:+55986312 MS.gene84420:CDS
CTAGTTACCTCAAAGGACAA+AGG 0.637645 4.1:-55986380 None:intergenic
GTGGCAGTAACAATAACAGA+AGG 0.647537 4.1:-55985615 None:intergenic
TAGAACAGGATGGATACCAA+TGG 0.662207 4.1:+55986307 MS.gene84420:CDS
CAACAGAGGGAGTACATGTG+GGG 0.668401 4.1:+55985539 MS.gene84420:CDS
ACTTATGCCAAAGACACAGA+AGG 0.668875 4.1:+55985228 MS.gene84420:CDS
AGTGCTGCTAGTTACCTCAA+AGG 0.674064 4.1:-55986387 None:intergenic
CATTTGCTGAAATTGCTAAG+GGG 0.677827 4.1:+55985727 MS.gene84420:CDS
AAGTTCTGATAACTAATGTG+GGG 0.688292 4.1:+55986246 MS.gene84420:CDS
ATTAGGAGGACAGAAATCAG+TGG 0.688419 4.1:-55985634 None:intergenic
TGTGATGCAGAAGGAGCTTG+TGG 0.691735 4.1:+55985453 MS.gene84420:intron
AGAGTGAAGTGTGAAAGAAG+TGG 0.695816 4.1:+55986182 MS.gene84420:intron
GATGTGTTGACCATATCTTG+TGG 0.783191 4.1:+55985577 MS.gene84420:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATGTACATTTTTTTTTTTTT+TGG - chr4.1:55985419-55985438 None:intergenic 10.0%
!!! ATTTTTTTATAAGTGTTTTT+GGG + chr4.1:55985790-55985809 MS.gene84420:intron 10.0%
!! AACTTAATTAATCTCTTATT+TGG + chr4.1:55985829-55985848 MS.gene84420:intron 15.0%
!!! GATTTTTTTATAAGTGTTTT+TGG + chr4.1:55985789-55985808 MS.gene84420:intron 15.0%
!!! TACATTTTTTTTTTTTTTGG+TGG - chr4.1:55985416-55985435 None:intergenic 15.0%
!! AAATGAAACTAAAAAACACA+AGG - chr4.1:55985981-55986000 None:intergenic 20.0%
!! ATAACATAGCTAATAAAAAG+AGG - chr4.1:55986063-55986082 None:intergenic 20.0%
!! GTTTATATAAAAACAGTTCA+AGG - chr4.1:55985914-55985933 None:intergenic 20.0%
!!! ACTGTTTTTATATAAACGTT+TGG + chr4.1:55985917-55985936 MS.gene84420:intron 20.0%
!!! ATTTTTTTTTTTTTTGGTGG+TGG - chr4.1:55985413-55985432 None:intergenic 20.0%
!!! TGTGTTTTTTAGTTTCATTT+TGG + chr4.1:55985981-55986000 MS.gene84420:intron 20.0%
! AAAAAGAGGCAAAAAAGATT+AGG - chr4.1:55986049-55986068 None:intergenic 25.0%
! GCACAAACAAAACAAAAATT+TGG - chr4.1:55986151-55986170 None:intergenic 25.0%
! TATCTACCTTCTATATTGAA+CGG - chr4.1:55985769-55985788 None:intergenic 25.0%
ATCTACCTTCTATATTGAAC+GGG - chr4.1:55985768-55985787 None:intergenic 30.0%
CAATTTGGACAAACATTTGA+AGG + chr4.1:55986452-55986471 MS.gene84420:CDS 30.0%
CATAATATATGCAAGATCCA+GGG + chr4.1:55985375-55985394 MS.gene84420:intron 30.0%
TAAAATCAAGTAGAGAAGTG+TGG - chr4.1:55985151-55985170 None:intergenic 30.0%
TTATTCCCGTTCAATATAGA+AGG + chr4.1:55985760-55985779 MS.gene84420:CDS 30.0%
TTGCTTACAAAGATCAAGAA+TGG + chr4.1:55985190-55985209 MS.gene84420:CDS 30.0%
! AAGTTCTGATAACTAATGTG+GGG + chr4.1:55986246-55986265 MS.gene84420:CDS 30.0%
! CAAGTTCTGATAACTAATGT+GGG + chr4.1:55986245-55986264 MS.gene84420:CDS 30.0%
! TCAAGTTCTGATAACTAATG+TGG + chr4.1:55986244-55986263 MS.gene84420:CDS 30.0%
!!! AAGTGTTTTTGGGATGTTTT+TGG + chr4.1:55985800-55985819 MS.gene84420:intron 30.0%
!!! TTTTTTTTTTTGGTGGTGGT+CGG - chr4.1:55985409-55985428 None:intergenic 30.0%
ACAGAAGGATCTCTAATTAC+AGG + chr4.1:55985243-55985262 MS.gene84420:CDS 35.0%
AGCTATGGAAAACATAGTGT+TGG + chr4.1:55985498-55985517 MS.gene84420:CDS 35.0%
ATAACTAATGTGGGGTTAGA+TGG + chr4.1:55986254-55986273 MS.gene84420:CDS 35.0%
GACAACTCAAAATGTTCTCT+TGG - chr4.1:55985699-55985718 None:intergenic 35.0%
GCATAATATATGCAAGATCC+AGG + chr4.1:55985374-55985393 MS.gene84420:intron 35.0%
TCAACTGAGAGACCAAAATT+AGG - chr4.1:55985654-55985673 None:intergenic 35.0%
TTTGGTCTCTCAGTTGATTA+TGG + chr4.1:55985657-55985676 MS.gene84420:CDS 35.0%
! AGCACAATTTTGTTCAACAG+AGG + chr4.1:55985525-55985544 MS.gene84420:CDS 35.0%
! ATGTTGCTGTTATGAACCAA+AGG - chr4.1:55985285-55985304 None:intergenic 35.0%
! CATTTGCTGAAATTGCTAAG+GGG + chr4.1:55985727-55985746 MS.gene84420:CDS 35.0%
! GATTTCTGTCCTCCTAATTT+TGG + chr4.1:55985639-55985658 MS.gene84420:CDS 35.0%
! GCACAATTTTGTTCAACAGA+GGG + chr4.1:55985526-55985545 MS.gene84420:CDS 35.0%
! GCATTTGCTGAAATTGCTAA+GGG + chr4.1:55985726-55985745 MS.gene84420:CDS 35.0%
! GTTTGGCTCAATTACACATT+TGG + chr4.1:55985934-55985953 MS.gene84420:intron 35.0%
! TGCATTTGCTGAAATTGCTA+AGG + chr4.1:55985725-55985744 MS.gene84420:CDS 35.0%
!! AGTTTTTGCTGTGAAAGTGA+AGG + chr4.1:55986280-55986299 MS.gene84420:CDS 35.0%
!! GTTTTTGCTGTGAAAGTGAA+GGG + chr4.1:55986281-55986300 MS.gene84420:CDS 35.0%
!!! AGAACATTTTGAGTTGTCAC+TGG + chr4.1:55985701-55985720 MS.gene84420:CDS 35.0%
!!! TTTTTTTTTTGGTGGTGGTC+GGG - chr4.1:55985408-55985427 None:intergenic 35.0%
ACTGAGAGACCAAAATTAGG+AGG - chr4.1:55985651-55985670 None:intergenic 40.0%
ACTTATGCCAAAGACACAGA+AGG + chr4.1:55985228-55985247 MS.gene84420:CDS 40.0%
AGAGTGAAGTGTGAAAGAAG+TGG + chr4.1:55986182-55986201 MS.gene84420:intron 40.0%
ATACCAATGGCAAGGAATTG+GGG + chr4.1:55986320-55986339 MS.gene84420:CDS 40.0%
ATTAGGAGGACAGAAATCAG+TGG - chr4.1:55985637-55985656 None:intergenic 40.0%
CAAGCATACACCACAAGATA+TGG - chr4.1:55985590-55985609 None:intergenic 40.0%
CAAGGAATTGGGGAATGAAT+TGG + chr4.1:55986330-55986349 MS.gene84420:CDS 40.0%
CATATCTTGTGGTGTATGCT+TGG + chr4.1:55985588-55985607 MS.gene84420:CDS 40.0%
CTAGTTACCTCAAAGGACAA+AGG - chr4.1:55986383-55986402 None:intergenic 40.0%
GATACCAATGGCAAGGAATT+GGG + chr4.1:55986319-55986338 MS.gene84420:CDS 40.0%
GATCTTCACAAAGCTAGCTA+TGG + chr4.1:55985483-55985502 MS.gene84420:CDS 40.0%
GGGTTGAAATTCACAATGAG+TGG + chr4.1:55986206-55986225 MS.gene84420:CDS 40.0%
GTGGCAGTAACAATAACAGA+AGG - chr4.1:55985618-55985637 None:intergenic 40.0%
GTTTGTCCAAATTGCCAGTT+TGG - chr4.1:55986446-55986465 None:intergenic 40.0%
TAGAACAGGATGGATACCAA+TGG + chr4.1:55986307-55986326 MS.gene84420:CDS 40.0%
TAGAGATCCTTCTGTGTCTT+TGG - chr4.1:55985238-55985257 None:intergenic 40.0%
TCTCAGTTGATTATGGTGGT+TGG + chr4.1:55985664-55985683 MS.gene84420:CDS 40.0%
TGAAGTGTGAAAGAAGTGGA+GGG + chr4.1:55986186-55986205 MS.gene84420:CDS 40.0%
! AAAGTGAAGGGATCTAGAAC+AGG + chr4.1:55986293-55986312 MS.gene84420:CDS 40.0%
! GATGTGTTGACCATATCTTG+TGG + chr4.1:55985577-55985596 MS.gene84420:CDS 40.0%
! TACTTTTCTTGCTCCTCCTT+TGG + chr4.1:55985266-55985285 MS.gene84420:intron 40.0%
! TTGCTGTTATGAACCAAAGG+AGG - chr4.1:55985282-55985301 None:intergenic 40.0%
!!! TTTTTTTTTGGTGGTGGTCG+GGG - chr4.1:55985407-55985426 None:intergenic 40.0%
ACAATGTAGCACCTCCAAAC+TGG + chr4.1:55986429-55986448 MS.gene84420:CDS 45.0%
ACATCAGCCTTTGTCCTTTG+AGG + chr4.1:55986373-55986392 MS.gene84420:CDS 45.0%
AGGACAAAGGCTGATGTTGA+AGG - chr4.1:55986370-55986389 None:intergenic 45.0%
ATTCCCCAATTCCTTGCCAT+TGG - chr4.1:55986326-55986345 None:intergenic 45.0%
GGATACCAATGGCAAGGAAT+TGG + chr4.1:55986318-55986337 MS.gene84420:CDS 45.0%
GGTCTCTCAGTTGATTATGG+TGG + chr4.1:55985660-55985679 MS.gene84420:CDS 45.0%
GTCTTTGGCATAAGTTGCAG+TGG - chr4.1:55985223-55985242 None:intergenic 45.0%
GTGAAGTGTGAAAGAAGTGG+AGG + chr4.1:55986185-55986204 MS.gene84420:CDS 45.0%
TGTCCAAATTGCCAGTTTGG+AGG - chr4.1:55986443-55986462 None:intergenic 45.0%
TTGTGTGCATGTGATGCAGA+AGG + chr4.1:55985444-55985463 MS.gene84420:intron 45.0%
! AGTGCTGCTAGTTACCTCAA+AGG - chr4.1:55986390-55986409 None:intergenic 45.0%
! TCAACAGAGGGAGTACATGT+GGG + chr4.1:55985538-55985557 MS.gene84420:CDS 45.0%
! TGAAGGGATCTAGAACAGGA+TGG + chr4.1:55986297-55986316 MS.gene84420:CDS 45.0%
! TGAGCTTAGCTCAGTTGGTA+TGG + chr4.1:55985346-55985365 MS.gene84420:intron 45.0%
! TTCAACAGAGGGAGTACATG+TGG + chr4.1:55985537-55985556 MS.gene84420:CDS 45.0%
! TTTGAGGTAACTAGCAGCAC+TGG + chr4.1:55986389-55986408 MS.gene84420:CDS 45.0%
CAGGATGGATACCAATGGCA+AGG + chr4.1:55986312-55986331 MS.gene84420:CDS 50.0%
GCACCTCCAAACTGGCAATT+TGG + chr4.1:55986437-55986456 MS.gene84420:CDS 50.0%
GCAGAAGGAGCTTGTGGTTA+TGG + chr4.1:55985459-55985478 MS.gene84420:intron 50.0%
TGTGATGCAGAAGGAGCTTG+TGG + chr4.1:55985453-55985472 MS.gene84420:intron 50.0%
! CAACAGAGGGAGTACATGTG+GGG + chr4.1:55985539-55985558 MS.gene84420:CDS 50.0%
CCAACTGAGCTAAGCTCACG+AGG - chr4.1:55985344-55985363 None:intergenic 55.0%
CCTCGTGAGCTTAGCTCAGT+TGG + chr4.1:55985341-55985360 MS.gene84420:intron 55.0%
GGTGGTCGGGGTTTGAACCC+TGG - chr4.1:55985395-55985414 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 55985132 55986487 55985132 ID=MS.gene84420
chr4.1 mRNA 55985132 55986487 55985132 ID=MS.gene84420.t1;Parent=MS.gene84420
chr4.1 exon 55985132 55985264 55985132 ID=MS.gene84420.t1.exon1;Parent=MS.gene84420.t1
chr4.1 CDS 55985132 55985264 55985132 ID=cds.MS.gene84420.t1;Parent=MS.gene84420.t1
chr4.1 exon 55985463 55985781 55985463 ID=MS.gene84420.t1.exon2;Parent=MS.gene84420.t1
chr4.1 CDS 55985463 55985781 55985463 ID=cds.MS.gene84420.t1;Parent=MS.gene84420.t1
chr4.1 exon 55986184 55986487 55986184 ID=MS.gene84420.t1.exon3;Parent=MS.gene84420.t1
chr4.1 CDS 55986184 55986487 55986184 ID=cds.MS.gene84420.t1;Parent=MS.gene84420.t1
Gene Sequence

>MS.gene84420

ATGGGTGTTCTTCAGTCCACACTTCTCTACTTGATTTTATTACATTCATTCAACATTGTTGCTTACAAAGATCAAGAATGGAAGAAAGCCACTGCAACTTATGCCAAAGACACAGAAGGATCTCTAATTACAGGTACTTTTCTTGCTCCTCCTTTGGTTCATAACAGCAACATTAATAGTCTTGTTTTGTCAAATGTACATGATTTTGTCCTCGTGAGCTTAGCTCAGTTGGTATGGACAATGCATAATATATGCAAGATCCAGGGTTCAAACCCCGACCACCACCAAAAAAAAAAAAAATGTACATGATTTTTGTGTGCATGTGATGCAGAAGGAGCTTGTGGTTATGGAGATCTTCACAAAGCTAGCTATGGAAAACATAGTGTTGGATTAAGCACAATTTTGTTCAACAGAGGGAGTACATGTGGGGCTTGCTATGAGATCAGATGTGTTGACCATATCTTGTGGTGTATGCTTGGAAGTCCTTCTGTTATTGTTACTGCCACTGATTTCTGTCCTCCTAATTTTGGTCTCTCAGTTGATTATGGTGGTTGGTGTAACTTTCCAAGAGAACATTTTGAGTTGTCACTGGCTGCATTTGCTGAAATTGCTAAGGGGAAAGCTGATATTATTCCCGTTCAATATAGAAGGTAGATAGATTTTTTTATAAGTGTTTTTGGGATGTTTTTGGATAAACAACTTAATTAATCTCTTATTTGGTTAATGATGTTTATATAAGCGCTTATGTATAAACAATTTTTATAATCATAGAATACTGTCCTTGAACTGTTTTTATATAAACGTTTGGCTCAATTACACATTTGGTTTTTAACTTTCATTTTAGTTCCTTGTGTTTTTTAGTTTCATTTTGGTTGTAATTTAAGAGACTAATCTTAAATTGTAATTTAATTTATCCTAATCTTTTTTGCCTCTTTTTATTAGCTATGTTATAGAGCTTATTAAAATAAGTCAGAAAATAATTTATAAACATGTTATAAGTTTTCTTATAAACTCTTCCAAATTTTTGTTTTGTTTGTGCAAATGTGATGCAGAGTGAAGTGTGAAAGAAGTGGAGGGTTGAAATTCACAATGAGTGGAAGTTCTCATTTCTATCAAGTTCTGATAACTAATGTGGGGTTAGATGGTGAAGTTTTTGCTGTGAAAGTGAAGGGATCTAGAACAGGATGGATACCAATGGCAAGGAATTGGGGAATGAATTGGCATTGCAATGTCAACCTTCAACATCAGCCTTTGTCCTTTGAGGTAACTAGCAGCACTGGAAAAACACTCACATCTTACAATGTAGCACCTCCAAACTGGCAATTTGGACAAACATTTGAAGGAAAACAATTTTAG
Protein sequence

>MS.gene84420.t1

MGVLQSTLLYLILLHSFNIVAYKDQEWKKATATYAKDTEGSLITEGACGYGDLHKASYGKHSVGLSTILFNRGSTCGACYEIRCVDHILWCMLGSPSVIVTATDFCPPNFGLSVDYGGWCNFPREHFELSLAAFAEIAKGKADIIPVQYRRVKCERSGGLKFTMSGSSHFYQVLITNVGLDGEVFAVKVKGSRTGWIPMARNWGMNWHCNVNLQHQPLSFEVTSSTGKTLTSYNVAPPNWQFGQTFEGKQF