Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85160.t1 | XP_003597674.1 | 96.5 | 1140 | 40 | 0 | 1 | 1140 | 1 | 1140 | 0.00E+00 | 2128.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85160.t1 | Q0WVF8 | 45.5 | 1153 | 592 | 11 | 1 | 1138 | 2 | 1133 | 3.9e-271 | 936.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85160.t1 | G7IHZ6 | 96.5 | 1140 | 40 | 0 | 1 | 1140 | 1 | 1140 | 0.0e+00 | 2128.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049207 | MS.gene85160 | 0.840589 | 7.94E-58 | -1.69E-46 |
| MS.gene049824 | MS.gene85160 | 0.842533 | 2.44E-58 | -1.69E-46 |
| MS.gene049825 | MS.gene85160 | 0.808635 | 2.81E-50 | -1.69E-46 |
| MS.gene050427 | MS.gene85160 | 0.81987 | 9.26E-53 | -1.69E-46 |
| MS.gene050885 | MS.gene85160 | 0.819825 | 9.48E-53 | -1.69E-46 |
| MS.gene055808 | MS.gene85160 | 0.805297 | 1.43E-49 | -1.69E-46 |
| MS.gene056403 | MS.gene85160 | 0.809523 | 1.81E-50 | -1.69E-46 |
| MS.gene059935 | MS.gene85160 | 0.801745 | 7.79E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene85160 | MS.gene91488 | PPI |
| MS.gene35361 | MS.gene85160 | PPI |
| MS.gene94650 | MS.gene85160 | PPI |
| MS.gene85160 | MS.gene073095 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85160.t1 | MTR_2g100870 | 96.491 | 1140 | 40 | 0 | 1 | 1140 | 1 | 1140 | 0.0 | 2257 |
| MS.gene85160.t1 | MTR_5g085950 | 86.053 | 1140 | 158 | 1 | 1 | 1140 | 1 | 1139 | 0.0 | 1942 |
| MS.gene85160.t1 | MTR_5g055460 | 83.333 | 48 | 8 | 0 | 175 | 222 | 17 | 64 | 1.50e-19 | 85.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85160.t1 | AT5G48120 | 45.447 | 1153 | 593 | 11 | 1 | 1138 | 2 | 1133 | 0.0 | 945 |
| MS.gene85160.t1 | AT5G48120 | 45.447 | 1153 | 593 | 11 | 1 | 1138 | 2 | 1133 | 0.0 | 945 |
| MS.gene85160.t1 | AT5G48120 | 45.447 | 1153 | 593 | 11 | 1 | 1138 | 2 | 1133 | 0.0 | 945 |
Find 208 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTAAGAATGATGGATAAAT+TGG | 0.076592 | 2.4:-3658321 | MS.gene85160:CDS |
| AGACACTTTATATACTTATT+TGG | 0.080986 | 2.4:-3658645 | MS.gene85160:CDS |
| TGCAGAAGCCCTCTTATATT+TGG | 0.180661 | 2.4:+3655898 | None:intergenic |
| ATATTCTCAAATGTTGATTT+TGG | 0.185446 | 2.4:+3657213 | None:intergenic |
| TGCAATTTGCTGTGGATATT+TGG | 0.195724 | 2.4:-3656344 | MS.gene85160:CDS |
| CATGAGACGTTAAATTTCTT+TGG | 0.197723 | 2.4:+3656650 | None:intergenic |
| TCAATTATCATAGAAGATTT+TGG | 0.200733 | 2.4:-3657174 | MS.gene85160:CDS |
| TGAAACTGCTGTTCAGCTTT+TGG | 0.210397 | 2.4:-3656629 | MS.gene85160:CDS |
| GACACTTTATATACTTATTT+GGG | 0.214061 | 2.4:-3658644 | MS.gene85160:CDS |
| TCAACTACAACTTCGTTCTT+TGG | 0.238088 | 2.4:+3658572 | None:intergenic |
| CTTGCAAAATGGCGGTATTT+TGG | 0.239622 | 2.4:-3658273 | MS.gene85160:CDS |
| GCTTCTACTTTGAGTGAAAA+AGG | 0.246531 | 2.4:+3657000 | None:intergenic |
| TATACTGAATGAAGCTAAAA+AGG | 0.249796 | 2.4:-3654936 | MS.gene85160:intron |
| TATATTTGGAATGTGTGTTT+TGG | 0.263185 | 2.4:+3655912 | None:intergenic |
| TTATATTCAACACAAAATTA+TGG | 0.275586 | 2.4:-3655741 | MS.gene85160:CDS |
| CAAAATATACTGGGGCTATT+TGG | 0.280307 | 2.4:-3658679 | MS.gene85160:CDS |
| TGTTCCAGTTGCACAGGCTT+TGG | 0.282641 | 2.4:-3655845 | MS.gene85160:CDS |
| GCTGTCTTATTTAATGCCTT+TGG | 0.286607 | 2.4:-3658125 | MS.gene85160:CDS |
| TACACAGACCTCGGATAAAT+TGG | 0.288390 | 2.4:+3656903 | None:intergenic |
| GTTCCAGTTGCACAGGCTTT+GGG | 0.289048 | 2.4:-3655844 | MS.gene85160:CDS |
| CACTTGCAGGTTCAATCTTT+AGG | 0.305593 | 2.4:-3662097 | MS.gene85160:CDS |
| GCAGCTCATACCAGTTCTTC+TGG | 0.317367 | 2.4:-3654813 | MS.gene85160:intron |
| AAAGCAAGCATTAAACATTC+TGG | 0.318254 | 2.4:+3660656 | None:intergenic |
| TTGAAAGCATTATTTCATAT+TGG | 0.321286 | 2.4:-3657126 | MS.gene85160:CDS |
| AACATTGATGGCTTGCAAAA+TGG | 0.325223 | 2.4:-3658284 | MS.gene85160:CDS |
| GAGAGAATCGCAAAATATAC+TGG | 0.334038 | 2.4:-3658689 | MS.gene85160:CDS |
| GCCTCACAAAGTGTTAATTT+CGG | 0.341373 | 2.4:-3658251 | MS.gene85160:CDS |
| GAGCCCAAAGCCTGTGCAAC+TGG | 0.345968 | 2.4:+3655841 | None:intergenic |
| TTCTTCAGGAATTCTTCTTC+TGG | 0.346745 | 2.4:-3662842 | MS.gene85160:intron |
| TGCCGATTCAATTGCCTCAT+TGG | 0.354326 | 2.4:-3661653 | MS.gene85160:intron |
| CATACAAGATATCTTTATCT+TGG | 0.362497 | 2.4:+3654762 | None:intergenic |
| AAAAGTACCCCTTCATCCTT+AGG | 0.362568 | 2.4:+3655967 | None:intergenic |
| GTTGCAAGCTTGGATGCAAT+TGG | 0.372632 | 2.4:-3663642 | MS.gene85160:CDS |
| TCACCTCCAATGTATATATC+AGG | 0.379956 | 2.4:+3658062 | None:intergenic |
| ACTTCCGTGCCTTTAGTTGA+AGG | 0.385121 | 2.4:-3655496 | MS.gene85160:CDS |
| ATGGGCAGGATCCTTGAAAA+TGG | 0.386884 | 2.4:-3656387 | MS.gene85160:intron |
| ATCTTTATCTTGGATATCTT+CGG | 0.387694 | 2.4:+3654772 | None:intergenic |
| AAAAGATTGAGTAATGGATT+TGG | 0.388568 | 2.4:+3662126 | None:intergenic |
| GATTCTCTCTGCTCCATACT+TGG | 0.393299 | 2.4:+3658703 | None:intergenic |
| ATGCCATTTGTGGGCTCTCA+TGG | 0.397432 | 2.4:-3655609 | MS.gene85160:CDS |
| AGAGTGTGCTCCTCCAAGTA+TGG | 0.397798 | 2.4:-3658716 | MS.gene85160:CDS |
| GGAAGATTGACATTAACTTC+TGG | 0.399199 | 2.4:-3656006 | MS.gene85160:CDS |
| GTAGTTCTATACAGAGATAA+AGG | 0.401655 | 2.4:+3658225 | None:intergenic |
| TCTAATAATATGTTACAGAT+AGG | 0.403816 | 2.4:-3655712 | MS.gene85160:CDS |
| CTTCAAACCAATGCCATTTG+TGG | 0.407593 | 2.4:-3655619 | MS.gene85160:CDS |
| AGGTGCGCTCGTTGGTTGCT+TGG | 0.408972 | 2.4:-3662197 | MS.gene85160:CDS |
| TAATTCTCCATTTGAGGAAA+AGG | 0.410569 | 2.4:-3656295 | MS.gene85160:intron |
| AGTGTTGTGGGTACGGTAAC+GGG | 0.413671 | 2.4:-3662157 | MS.gene85160:CDS |
| GAAGTACTGACCATGCTTGC+CGG | 0.413682 | 2.4:+3653471 | None:intergenic |
| TTAAGAATGATGGATAAATT+GGG | 0.416904 | 2.4:-3658320 | MS.gene85160:CDS |
| GTTCTTACTGATTTATGTCT+CGG | 0.417407 | 2.4:-3655661 | MS.gene85160:CDS |
| AGCTGAGGAACTATGAAGTA+TGG | 0.418824 | 2.4:+3658145 | None:intergenic |
| ACTCTCAGGATGCAGGGAAT+TGG | 0.421940 | 2.4:-3658204 | MS.gene85160:CDS |
| TCAAGTGAGCCTTCAACTAA+AGG | 0.422165 | 2.4:+3655487 | None:intergenic |
| AATCCATGCAATTTCCTGCT+TGG | 0.428610 | 2.4:+3656319 | None:intergenic |
| AAGAAGAAAGTTTCTGAAGA+AGG | 0.429146 | 2.4:+3658908 | None:intergenic |
| ACACACATTCCAAATATAAG+AGG | 0.429195 | 2.4:-3655907 | MS.gene85160:CDS |
| GTAGAAGCATTATATGATAT+CGG | 0.429218 | 2.4:-3656985 | MS.gene85160:CDS |
| GCACAATAAGCTGCTGAAGC+AGG | 0.431485 | 2.4:+3658540 | None:intergenic |
| AAGTCTGATACCGTCTTATG+AGG | 0.431679 | 2.4:+3654208 | None:intergenic |
| GACAAGCAATCCAGAAGAAC+TGG | 0.432210 | 2.4:+3654803 | None:intergenic |
| TTGGTTGCTTGGCACTGATA+AGG | 0.433268 | 2.4:-3662186 | MS.gene85160:CDS |
| TAGCTTGGTTGGGTTCTTCA+AGG | 0.437441 | 2.4:-3662767 | MS.gene85160:CDS |
| TGTATTGCAGGTTGCAAGCT+TGG | 0.439105 | 2.4:-3663652 | MS.gene85160:intron |
| GATCTGATTCTTTATTGTCC+AGG | 0.441249 | 2.4:-3655285 | MS.gene85160:intron |
| TGGCATTCCATAGTACTGTT+TGG | 0.446947 | 2.4:+3657151 | None:intergenic |
| TTCAAACCAATGCCATTTGT+GGG | 0.447068 | 2.4:-3655618 | MS.gene85160:CDS |
| ATCAGACTTCTCTGCACCAT+TGG | 0.447336 | 2.4:+3655792 | None:intergenic |
| AGGAATTCTTCTTCTGGCAG+AGG | 0.451191 | 2.4:-3662836 | MS.gene85160:CDS |
| AAAACTATACATAGCTTGGT+TGG | 0.451872 | 2.4:-3662778 | MS.gene85160:CDS |
| GGGTGTTGTTCCAGTTGCAC+AGG | 0.458087 | 2.4:-3655851 | MS.gene85160:CDS |
| CACAGCATTGCAGGAAGGAA+TGG | 0.459401 | 2.4:+3658358 | None:intergenic |
| AATCTTTAGGACTGCATGAC+AGG | 0.461991 | 2.4:-3662084 | MS.gene85160:CDS |
| AAAGTACCCCTTCATCCTTA+GGG | 0.462262 | 2.4:+3655968 | None:intergenic |
| TAGGTAATGGATCAAGTAAT+GGG | 0.464527 | 2.4:-3655693 | MS.gene85160:CDS |
| CAAGATAAAGATATCTTGTA+TGG | 0.465086 | 2.4:-3654761 | MS.gene85160:CDS |
| CACTATTTCTGTGCAAGAAA+AGG | 0.466787 | 2.4:-3658429 | MS.gene85160:CDS |
| TGAGATCAATTGCAGAAAGA+TGG | 0.467104 | 2.4:+3655309 | None:intergenic |
| GCTAGAGTAAAAGAGAAATC+TGG | 0.469250 | 2.4:+3658617 | None:intergenic |
| CGATTATATCCTGATCCATC+TGG | 0.470202 | 2.4:-3660611 | MS.gene85160:CDS |
| TAGAACTACTCTCAGGATGC+AGG | 0.472025 | 2.4:-3658211 | MS.gene85160:CDS |
| GGGCTCTCATGGATTGGAAA+AGG | 0.473984 | 2.4:-3655598 | MS.gene85160:CDS |
| TGGGAGTGAACCTGGTGAGA+TGG | 0.474738 | 2.4:+3663734 | None:intergenic |
| AAGTTTCAGCTTAATGATGT+AGG | 0.474859 | 2.4:-3656027 | MS.gene85160:CDS |
| TTGCAAGCTTGGATGCAATT+GGG | 0.475056 | 2.4:-3663641 | MS.gene85160:CDS |
| AAGGAGAAACTACATGCTAT+TGG | 0.476172 | 2.4:-3658410 | MS.gene85160:CDS |
| CTTACATGTGTAAAGTGAAT+CGG | 0.477840 | 2.4:+3660536 | None:intergenic |
| ATTTGTGGGCTCTCATGGAT+TGG | 0.477974 | 2.4:-3655604 | MS.gene85160:CDS |
| TTATTTATAATCAGGCAGAT+TGG | 0.478009 | 2.4:-3662231 | MS.gene85160:intron |
| GCACACTCTAAGATATTGTA+AGG | 0.481622 | 2.4:+3658730 | None:intergenic |
| AAACTATACATAGCTTGGTT+GGG | 0.482444 | 2.4:-3662777 | MS.gene85160:CDS |
| GTAAAGTGAATCGGAAAGTA+AGG | 0.484365 | 2.4:+3660545 | None:intergenic |
| AATGCACATATTATCATCAA+TGG | 0.492111 | 2.4:-3654253 | MS.gene85160:CDS |
| TGGGTTCTTCAAGGAAAGAA+TGG | 0.495618 | 2.4:-3662758 | MS.gene85160:intron |
| AAAATTCAGCGAGTCTGAAA+AGG | 0.497418 | 2.4:-3657091 | MS.gene85160:CDS |
| GACATTTCCCCTAAGGATGA+AGG | 0.497426 | 2.4:-3655976 | MS.gene85160:CDS |
| CTCATAAGATGCAATGCTGT+TGG | 0.497867 | 2.4:+3658460 | None:intergenic |
| GAGGAAAAGTGTTGTGGGTA+CGG | 0.500931 | 2.4:-3662164 | MS.gene85160:CDS |
| AATATGTTACAGATAGGTAA+TGG | 0.501229 | 2.4:-3655706 | MS.gene85160:CDS |
| TACCAATGAGGCAATTGAAT+CGG | 0.502183 | 2.4:+3661651 | None:intergenic |
| TGAAATTTAGGTTAGAGAGT+TGG | 0.502230 | 2.4:-3663459 | MS.gene85160:intron |
| CACAATAAGCTGCTGAAGCA+GGG | 0.507341 | 2.4:+3658541 | None:intergenic |
| AAGTGTTGTGGGTACGGTAA+CGG | 0.511090 | 2.4:-3662158 | MS.gene85160:CDS |
| AGAGCAGAAATGTGATCCTC+TGG | 0.513326 | 2.4:-3655455 | MS.gene85160:CDS |
| GCAGGAAGGAATGGAAGTCT+TGG | 0.514261 | 2.4:+3658367 | None:intergenic |
| TGGAAAGTTAATACCATCTG+TGG | 0.516141 | 2.4:+3658592 | None:intergenic |
| GCAAGTAGACCAGATGGATC+AGG | 0.516624 | 2.4:+3660602 | None:intergenic |
| TTGCAGAAAGATGGGCATCA+TGG | 0.520421 | 2.4:+3655318 | None:intergenic |
| CTGTCAAATGCCGGCAAGCA+TGG | 0.520628 | 2.4:-3653481 | MS.gene85160:intron |
| CTCTTCAACTCCATCTCACC+AGG | 0.521795 | 2.4:-3663744 | MS.gene85160:intron |
| TCTGATCCTGATATATACAT+TGG | 0.522783 | 2.4:-3658068 | MS.gene85160:CDS |
| GAAAGTTTCTGAAGAAGGAG+AGG | 0.523072 | 2.4:+3658913 | None:intergenic |
| GCAGTACGAGGTGCGCTCGT+TGG | 0.524945 | 2.4:-3662205 | MS.gene85160:CDS |
| TGAGAGCCCACAAATGGCAT+TGG | 0.529030 | 2.4:+3655612 | None:intergenic |
| TACATCATTAAGCTGAAACT+TGG | 0.529117 | 2.4:+3656029 | None:intergenic |
| AGAAGGAGAGGAATGACAAA+TGG | 0.529592 | 2.4:+3658925 | None:intergenic |
| GAAGTCTGATGAACTTACCT+TGG | 0.531629 | 2.4:-3655779 | MS.gene85160:CDS |
| AATCCATGAGAGCCCACAAA+TGG | 0.532104 | 2.4:+3655606 | None:intergenic |
| GCTTACAATTCTTCAAGCGA+TGG | 0.534202 | 2.4:-3656941 | MS.gene85160:CDS |
| GAGATCAATTGCAGAAAGAT+GGG | 0.536252 | 2.4:+3655310 | None:intergenic |
| TTTAATAATAACCCTCCTCA+AGG | 0.537659 | 2.4:-3655872 | MS.gene85160:CDS |
| GGGCATCGATTGCCTCATCT+AGG | 0.541580 | 2.4:-3653360 | MS.gene85160:CDS |
| ATAGGTAATGGATCAAGTAA+TGG | 0.542296 | 2.4:-3655694 | MS.gene85160:CDS |
| AAAATATGACATTTCCCCTA+AGG | 0.543815 | 2.4:-3655983 | MS.gene85160:CDS |
| ACATTTCCCCTAAGGATGAA+GGG | 0.544414 | 2.4:-3655975 | MS.gene85160:CDS |
| CTCTGTATAGAACTACTCTC+AGG | 0.544666 | 2.4:-3658218 | MS.gene85160:CDS |
| GAACCAAGCAGGAAATTGCA+TGG | 0.546490 | 2.4:-3656322 | MS.gene85160:CDS |
| ATAAGGAGGAAAAGTGTTGT+GGG | 0.547829 | 2.4:-3662169 | MS.gene85160:CDS |
| TCTCTCTGCTCCATACTTGG+AGG | 0.547967 | 2.4:+3658706 | None:intergenic |
| GTACCATCAGAGTCCTTGAT+AGG | 0.548690 | 2.4:+3660167 | None:intergenic |
| GTGGATATTTGGAACCAAGC+AGG | 0.552500 | 2.4:-3656333 | MS.gene85160:CDS |
| GCAATGAAGCTGTCAAATGC+CGG | 0.553254 | 2.4:-3653490 | MS.gene85160:CDS |
| TGGAGGTGCAGAGGATTTCG+TGG | 0.554978 | 2.4:-3656367 | MS.gene85160:CDS |
| AGAGAATCGCAAAATATACT+GGG | 0.556242 | 2.4:-3658688 | MS.gene85160:CDS |
| ATTCTTGCAAGCTACTTCCA+TGG | 0.557389 | 2.4:-3656600 | MS.gene85160:intron |
| GATCCTGATATATACATTGG+AGG | 0.557628 | 2.4:-3658065 | MS.gene85160:intron |
| TGCAACGAGATGACCTATCA+AGG | 0.557982 | 2.4:-3660180 | MS.gene85160:CDS |
| GATACAGTTATTCGATCAAG+AGG | 0.561676 | 2.4:-3663416 | MS.gene85160:intron |
| AATCGGCATGATGTTCTAGC+AGG | 0.561685 | 2.4:+3661668 | None:intergenic |
| TTCTTCACTACATTCAGCAA+AGG | 0.562396 | 2.4:-3658890 | MS.gene85160:intron |
| GAAAATTTCATGCCACAGTA+CGG | 0.562746 | 2.4:-3655369 | MS.gene85160:CDS |
| TTGTAGAAAAGATTGAGTAA+TGG | 0.565621 | 2.4:+3662120 | None:intergenic |
| GATAAGGAGGAAAAGTGTTG+TGG | 0.565850 | 2.4:-3662170 | MS.gene85160:CDS |
| ATGTATATATCAGGATCAGA+GGG | 0.568346 | 2.4:+3658071 | None:intergenic |
| TGCTTCTAGAGTTAAAGCAT+TGG | 0.570514 | 2.4:+3663605 | None:intergenic |
| AAAGCGATGAAAGTTTCTGT+TGG | 0.571764 | 2.4:-3656117 | MS.gene85160:CDS |
| ACAATTCTTCAAGCGATGGA+AGG | 0.572459 | 2.4:-3656937 | MS.gene85160:CDS |
| CTGGTGAGATGGAGTTGAAG+AGG | 0.576523 | 2.4:+3663745 | None:intergenic |
| CAGTAAAACTATACATAGCT+TGG | 0.576918 | 2.4:-3662782 | MS.gene85160:CDS |
| AATGTATATATCAGGATCAG+AGG | 0.579679 | 2.4:+3658070 | None:intergenic |
| TTCTTTACCAGCAAACCAGT+GGG | 0.580902 | 2.4:-3660213 | MS.gene85160:intron |
| TCCGAAATTAACACTTTGTG+AGG | 0.585080 | 2.4:+3658250 | None:intergenic |
| CAATGGTCTAACTAAGCTTG+TGG | 0.585599 | 2.4:-3654236 | MS.gene85160:CDS |
| GTGGCACATTTCCTTGCCAG+AGG | 0.587914 | 2.4:+3655439 | None:intergenic |
| AAGCGATGAAAGTTTCTGTT+GGG | 0.589357 | 2.4:-3656116 | MS.gene85160:CDS |
| TAGCTTGATAATTGATGATG+AGG | 0.592254 | 2.4:-3658498 | MS.gene85160:CDS |
| GGAATTGGTTATTCTGTCTG+AGG | 0.592338 | 2.4:-3658189 | MS.gene85160:CDS |
| AAGCTTGCAAGTAGACCAGA+TGG | 0.592834 | 2.4:+3660596 | None:intergenic |
| AATATCAAGAGCTTCTTCCA+AGG | 0.593516 | 2.4:+3655762 | None:intergenic |
| GTTGCTTGGCACTGATAAGG+AGG | 0.593536 | 2.4:-3662183 | MS.gene85160:CDS |
| TTTAGGACTGCATGACAGGA+AGG | 0.596853 | 2.4:-3662080 | MS.gene85160:intron |
| TATCTATCCGTTGAGAACAC+AGG | 0.597641 | 2.4:-3653749 | MS.gene85160:intron |
| CACACATTCCAAATATAAGA+GGG | 0.598820 | 2.4:-3655906 | MS.gene85160:CDS |
| TTAATAATAACCCTCCTCAA+GGG | 0.599027 | 2.4:-3655871 | MS.gene85160:CDS |
| TTTCGTGGTGCAATTTGCTG+TGG | 0.599331 | 2.4:-3656352 | MS.gene85160:CDS |
| TTTCTTTACCAGCAAACCAG+TGG | 0.603166 | 2.4:-3660214 | MS.gene85160:intron |
| TCATTCAGTATAACAATCAG+TGG | 0.604482 | 2.4:+3654947 | None:intergenic |
| TATATTTACCAATTTATCCG+AGG | 0.604801 | 2.4:-3656911 | MS.gene85160:intron |
| TTTACTCTAGCACCCACAGA+TGG | 0.604886 | 2.4:-3658605 | MS.gene85160:CDS |
| ACACTTTATATACTTATTTG+GGG | 0.607680 | 2.4:-3658643 | MS.gene85160:CDS |
| AGAACTACTCTCAGGATGCA+GGG | 0.611678 | 2.4:-3658210 | MS.gene85160:CDS |
| GGAAAAGGTTTGCTGTTGCG+TGG | 0.612022 | 2.4:-3655583 | MS.gene85160:CDS |
| CTGGAACAACACCCTTGAGG+AGG | 0.612104 | 2.4:+3655860 | None:intergenic |
| TACAGCTAAGACTGAACCAA+AGG | 0.615923 | 2.4:+3658109 | None:intergenic |
| AGAAATGTGATCCTCTGGCA+AGG | 0.616514 | 2.4:-3655450 | MS.gene85160:CDS |
| CCTTGAAAATGGAGGTGCAG+AGG | 0.618663 | 2.4:-3656376 | MS.gene85160:CDS |
| AGTCTGATACCGTCTTATGA+GGG | 0.618808 | 2.4:+3654209 | None:intergenic |
| TGACCTATCAAGGACTCTGA+TGG | 0.620654 | 2.4:-3660170 | MS.gene85160:intron |
| GGAAAGTTAATACCATCTGT+GGG | 0.621048 | 2.4:+3658593 | None:intergenic |
| AAACTCACTTCGAAATCCAA+TGG | 0.626907 | 2.4:-3655808 | MS.gene85160:CDS |
| CATTTCCCCTAAGGATGAAG+GGG | 0.630449 | 2.4:-3655974 | MS.gene85160:CDS |
| CACTTTATATACTTATTTGG+GGG | 0.631526 | 2.4:-3658642 | MS.gene85160:CDS |
| TGAAACACAGCATTGCAGGA+AGG | 0.632076 | 2.4:+3658353 | None:intergenic |
| TGACAAACCTGTGTTCTCAA+CGG | 0.634669 | 2.4:+3653742 | None:intergenic |
| AAGTACCCCTTCATCCTTAG+GGG | 0.634965 | 2.4:+3655969 | None:intergenic |
| GTCAGACATGACATGTGCAA+AGG | 0.638569 | 2.4:+3654973 | None:intergenic |
| TGAGCCTTCAACTAAAGGCA+CGG | 0.639359 | 2.4:+3655492 | None:intergenic |
| TGGAACAACACCCTTGAGGA+GGG | 0.639744 | 2.4:+3655861 | None:intergenic |
| GGCATTAAATAAGACAGCTG+AGG | 0.645320 | 2.4:+3658130 | None:intergenic |
| TTGCACATGAGTATCCCCAC+TGG | 0.650398 | 2.4:+3660198 | None:intergenic |
| CTTATATAGAGGCCGTACTG+TGG | 0.653810 | 2.4:+3655357 | None:intergenic |
| AAGAACATGAAAAGCTTCCG+TGG | 0.653843 | 2.4:+3655420 | None:intergenic |
| ATGAAATAATGCTTTCAATG+TGG | 0.654390 | 2.4:+3657131 | None:intergenic |
| AACGGATAGATACGCACATG+AGG | 0.657874 | 2.4:+3653760 | None:intergenic |
| TACGGCCTCTATATAAGCAG+AGG | 0.658188 | 2.4:-3655351 | MS.gene85160:CDS |
| GGCAGGATCCTTGAAAATGG+AGG | 0.660852 | 2.4:-3656384 | MS.gene85160:intron |
| TCTGGCAAGGAAATGTGCCA+CGG | 0.665729 | 2.4:-3655437 | MS.gene85160:CDS |
| TGTGGACTACCCTCATAAGA+CGG | 0.673290 | 2.4:-3654218 | MS.gene85160:intron |
| ATTGATGGCTTGCAAAATGG+CGG | 0.675116 | 2.4:-3658281 | MS.gene85160:CDS |
| CAACTGGAACAACACCCTTG+AGG | 0.676901 | 2.4:+3655857 | None:intergenic |
| GAAACGAAGACTCCTAGATG+AGG | 0.685715 | 2.4:+3653348 | None:intergenic |
| AATGTGACGAGTCAATTGAG+TGG | 0.686701 | 2.4:+3663784 | None:intergenic |
| GGAAGTAAGGACTACCAATG+AGG | 0.689143 | 2.4:+3661639 | None:intergenic |
| GAGAATCGCAAAATATACTG+GGG | 0.706671 | 2.4:-3658687 | MS.gene85160:CDS |
| GCAGATTGGAAAGCAGTACG+AGG | 0.712571 | 2.4:-3662217 | MS.gene85160:CDS |
| TCTTTACCAGCAAACCAGTG+GGG | 0.721811 | 2.4:-3660212 | MS.gene85160:intron |
| AGTTGAAGAGGAGTCAACGT+AGG | 0.742240 | 2.4:+3663757 | None:intergenic |
| TGTATATATCAGGATCAGAG+GGG | 0.758584 | 2.4:+3658072 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 3653345 | 3663816 | 3653345 | ID=MS.gene85160 |
| chr2.4 | mRNA | 3653345 | 3663816 | 3653345 | ID=MS.gene85160.t1;Parent=MS.gene85160 |
| chr2.4 | exon | 3663745 | 3663816 | 3663745 | ID=MS.gene85160.t1.exon1;Parent=MS.gene85160.t1 |
| chr2.4 | CDS | 3663745 | 3663816 | 3663745 | ID=cds.MS.gene85160.t1;Parent=MS.gene85160.t1 |
| chr2.4 | exon | 3663602 | 3663664 | 3663602 | ID=MS.gene85160.t1.exon2;Parent=MS.gene85160.t1 |
| chr2.4 | CDS | 3663602 | 3663664 | 3663602 | ID=cds.MS.gene85160.t1;Parent=MS.gene85160.t1 |
| chr2.4 | exon | 3663417 | 3663471 | 3663417 | ID=MS.gene85160.t1.exon3;Parent=MS.gene85160.t1 |
| chr2.4 | CDS | 3663417 | 3663471 | 3663417 | ID=cds.MS.gene85160.t1;Parent=MS.gene85160.t1 |
| chr2.4 | exon | 3662759 | 3662856 | 3662759 | ID=MS.gene85160.t1.exon4;Parent=MS.gene85160.t1 |
| chr2.4 | CDS | 3662759 | 3662856 | 3662759 | ID=cds.MS.gene85160.t1;Parent=MS.gene85160.t1 |
| chr2.4 | exon | 3662081 | 3662239 | 3662081 | ID=MS.gene85160.t1.exon5;Parent=MS.gene85160.t1 |
| chr2.4 | CDS | 3662081 | 3662239 | 3662081 | ID=cds.MS.gene85160.t1;Parent=MS.gene85160.t1 |
| chr2.4 | exon | 3661654 | 3661713 | 3661654 | ID=MS.gene85160.t1.exon6;Parent=MS.gene85160.t1 |
| chr2.4 | CDS | 3661654 | 3661713 | 3661654 | ID=cds.MS.gene85160.t1;Parent=MS.gene85160.t1 |
| chr2.4 | exon | 3660541 | 3660729 | 3660541 | ID=MS.gene85160.t1.exon7;Parent=MS.gene85160.t1 |
| chr2.4 | CDS | 3660541 | 3660729 | 3660541 | ID=cds.MS.gene85160.t1;Parent=MS.gene85160.t1 |
| chr2.4 | exon | 3660171 | 3660224 | 3660171 | ID=MS.gene85160.t1.exon8;Parent=MS.gene85160.t1 |
| chr2.4 | CDS | 3660171 | 3660224 | 3660171 | ID=cds.MS.gene85160.t1;Parent=MS.gene85160.t1 |
| chr2.4 | exon | 3658891 | 3658977 | 3658891 | ID=MS.gene85160.t1.exon9;Parent=MS.gene85160.t1 |
| chr2.4 | CDS | 3658891 | 3658977 | 3658891 | ID=cds.MS.gene85160.t1;Parent=MS.gene85160.t1 |
| chr2.4 | exon | 3658066 | 3658759 | 3658066 | ID=MS.gene85160.t1.exon10;Parent=MS.gene85160.t1 |
| chr2.4 | CDS | 3658066 | 3658759 | 3658066 | ID=cds.MS.gene85160.t1;Parent=MS.gene85160.t1 |
| chr2.4 | exon | 3656912 | 3657285 | 3656912 | ID=MS.gene85160.t1.exon11;Parent=MS.gene85160.t1 |
| chr2.4 | CDS | 3656912 | 3657285 | 3656912 | ID=cds.MS.gene85160.t1;Parent=MS.gene85160.t1 |
| chr2.4 | exon | 3656601 | 3656674 | 3656601 | ID=MS.gene85160.t1.exon12;Parent=MS.gene85160.t1 |
| chr2.4 | CDS | 3656601 | 3656674 | 3656601 | ID=cds.MS.gene85160.t1;Parent=MS.gene85160.t1 |
| chr2.4 | exon | 3656296 | 3656401 | 3656296 | ID=MS.gene85160.t1.exon13;Parent=MS.gene85160.t1 |
| chr2.4 | CDS | 3656296 | 3656401 | 3656296 | ID=cds.MS.gene85160.t1;Parent=MS.gene85160.t1 |
| chr2.4 | exon | 3655286 | 3656160 | 3655286 | ID=MS.gene85160.t1.exon14;Parent=MS.gene85160.t1 |
| chr2.4 | CDS | 3655286 | 3656160 | 3655286 | ID=cds.MS.gene85160.t1;Parent=MS.gene85160.t1 |
| chr2.4 | exon | 3654937 | 3655012 | 3654937 | ID=MS.gene85160.t1.exon15;Parent=MS.gene85160.t1 |
| chr2.4 | CDS | 3654937 | 3655012 | 3654937 | ID=cds.MS.gene85160.t1;Parent=MS.gene85160.t1 |
| chr2.4 | exon | 3654720 | 3654831 | 3654720 | ID=MS.gene85160.t1.exon16;Parent=MS.gene85160.t1 |
| chr2.4 | CDS | 3654720 | 3654831 | 3654720 | ID=cds.MS.gene85160.t1;Parent=MS.gene85160.t1 |
| chr2.4 | exon | 3654219 | 3654295 | 3654219 | ID=MS.gene85160.t1.exon17;Parent=MS.gene85160.t1 |
| chr2.4 | CDS | 3654219 | 3654295 | 3654219 | ID=cds.MS.gene85160.t1;Parent=MS.gene85160.t1 |
| chr2.4 | exon | 3653750 | 3653830 | 3653750 | ID=MS.gene85160.t1.exon18;Parent=MS.gene85160.t1 |
| chr2.4 | CDS | 3653750 | 3653830 | 3653750 | ID=cds.MS.gene85160.t1;Parent=MS.gene85160.t1 |
| chr2.4 | exon | 3653482 | 3653561 | 3653482 | ID=MS.gene85160.t1.exon19;Parent=MS.gene85160.t1 |
| chr2.4 | CDS | 3653482 | 3653561 | 3653482 | ID=cds.MS.gene85160.t1;Parent=MS.gene85160.t1 |
| chr2.4 | exon | 3653345 | 3653381 | 3653345 | ID=MS.gene85160.t1.exon20;Parent=MS.gene85160.t1 |
| chr2.4 | CDS | 3653345 | 3653381 | 3653345 | ID=cds.MS.gene85160.t1;Parent=MS.gene85160.t1 |
| Gene Sequence |
| Protein sequence |
