Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85561.t1 | XP_013468732.1 | 99.3 | 147 | 1 | 0 | 1 | 147 | 1 | 147 | 1.00E-74 | 289.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85561.t1 | Q8SAG3 | 79.6 | 147 | 26 | 1 | 1 | 147 | 1 | 143 | 9.4e-61 | 234.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85561.t1 | A0A072VL70 | 99.3 | 147 | 1 | 0 | 1 | 147 | 1 | 147 | 7.4e-75 | 289.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049350 | MS.gene85561 | 0.800402 | 1.47E-48 | -1.69E-46 |
| MS.gene049808 | MS.gene85561 | 0.811755 | 5.97E-51 | -1.69E-46 |
| MS.gene050807 | MS.gene85561 | 0.812986 | 3.22E-51 | -1.69E-46 |
| MS.gene052516 | MS.gene85561 | 0.802374 | 5.78E-49 | -1.69E-46 |
| MS.gene053581 | MS.gene85561 | 0.811723 | 6.07E-51 | -1.69E-46 |
| MS.gene055891 | MS.gene85561 | 0.812413 | 4.29E-51 | -1.69E-46 |
| MS.gene056005 | MS.gene85561 | 0.800512 | 1.39E-48 | -1.69E-46 |
| MS.gene057694 | MS.gene85561 | 0.808706 | 2.72E-50 | -1.69E-46 |
| MS.gene061176 | MS.gene85561 | 0.80634 | 8.63E-50 | -1.69E-46 |
| MS.gene061177 | MS.gene85561 | 0.805348 | 1.39E-49 | -1.69E-46 |
| MS.gene061178 | MS.gene85561 | 0.806439 | 8.22E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85561.t1 | MTR_1g076170 | 99.320 | 147 | 1 | 0 | 1 | 147 | 1 | 147 | 1.46e-108 | 305 |
| MS.gene85561.t1 | MTR_7g096890 | 78.912 | 147 | 30 | 1 | 1 | 147 | 1 | 146 | 2.23e-86 | 249 |
| MS.gene85561.t1 | MTR_1g068950 | 62.319 | 138 | 52 | 0 | 10 | 147 | 2 | 139 | 1.82e-66 | 198 |
| MS.gene85561.t1 | MTR_4g073590 | 61.644 | 146 | 50 | 1 | 1 | 146 | 3 | 142 | 3.79e-66 | 197 |
| MS.gene85561.t1 | MTR_5g010430 | 61.314 | 137 | 51 | 1 | 10 | 146 | 4 | 138 | 1.23e-63 | 191 |
| MS.gene85561.t1 | MTR_8g098470 | 60.584 | 137 | 52 | 1 | 10 | 146 | 2 | 136 | 1.48e-61 | 186 |
| MS.gene85561.t1 | MTR_2g028670 | 55.797 | 138 | 61 | 0 | 10 | 147 | 2 | 139 | 1.14e-58 | 179 |
| MS.gene85561.t1 | MTR_8g088210 | 55.072 | 138 | 62 | 0 | 10 | 147 | 2 | 139 | 6.67e-56 | 172 |
| MS.gene85561.t1 | MTR_1g101190 | 58.394 | 137 | 55 | 1 | 10 | 146 | 463 | 597 | 5.48e-55 | 182 |
| MS.gene85561.t1 | MTR_8g088210 | 54.545 | 132 | 60 | 0 | 16 | 147 | 1 | 132 | 3.43e-52 | 162 |
| MS.gene85561.t1 | MTR_4g073590 | 58.416 | 101 | 36 | 1 | 1 | 101 | 3 | 97 | 3.17e-40 | 131 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85561.t1 | AT2G31200 | 76.190 | 147 | 34 | 1 | 1 | 147 | 1 | 146 | 6.42e-82 | 238 |
| MS.gene85561.t1 | AT5G59890 | 61.594 | 138 | 53 | 0 | 10 | 147 | 2 | 139 | 2.89e-65 | 195 |
| MS.gene85561.t1 | AT3G46010 | 57.931 | 145 | 61 | 0 | 3 | 147 | 6 | 150 | 8.31e-65 | 194 |
| MS.gene85561.t1 | AT4G00680 | 58.042 | 143 | 60 | 0 | 5 | 147 | 7 | 149 | 1.27e-64 | 194 |
| MS.gene85561.t1 | AT3G46010 | 60.145 | 138 | 55 | 0 | 10 | 147 | 2 | 139 | 2.34e-64 | 193 |
| MS.gene85561.t1 | AT4G00680 | 58.696 | 138 | 57 | 0 | 10 | 147 | 2 | 139 | 4.93e-64 | 192 |
| MS.gene85561.t1 | AT1G01750 | 58.696 | 138 | 57 | 0 | 10 | 147 | 2 | 139 | 1.87e-63 | 191 |
| MS.gene85561.t1 | AT1G01750 | 58.696 | 138 | 57 | 0 | 10 | 147 | 7 | 144 | 2.09e-63 | 191 |
| MS.gene85561.t1 | AT2G16700 | 58.503 | 147 | 55 | 1 | 1 | 147 | 3 | 143 | 2.93e-63 | 190 |
| MS.gene85561.t1 | AT4G25590 | 62.774 | 137 | 49 | 1 | 10 | 146 | 2 | 136 | 3.51e-63 | 190 |
| MS.gene85561.t1 | AT3G46000 | 60.870 | 138 | 52 | 1 | 10 | 147 | 2 | 137 | 2.57e-62 | 188 |
| MS.gene85561.t1 | AT3G46000 | 60.870 | 138 | 52 | 1 | 10 | 147 | 21 | 156 | 3.61e-62 | 188 |
| MS.gene85561.t1 | AT5G59890 | 61.364 | 132 | 51 | 0 | 16 | 147 | 1 | 132 | 2.07e-61 | 185 |
| MS.gene85561.t1 | AT5G59890 | 61.364 | 132 | 51 | 0 | 16 | 147 | 1 | 132 | 2.07e-61 | 185 |
| MS.gene85561.t1 | AT2G16700 | 61.364 | 132 | 51 | 0 | 16 | 147 | 1 | 132 | 1.08e-60 | 183 |
| MS.gene85561.t1 | AT2G16700 | 61.364 | 132 | 51 | 0 | 16 | 147 | 1 | 132 | 1.08e-60 | 183 |
| MS.gene85561.t1 | AT4G34970 | 58.394 | 137 | 57 | 0 | 11 | 147 | 5 | 141 | 1.92e-60 | 183 |
| MS.gene85561.t1 | AT5G52360 | 61.314 | 137 | 51 | 1 | 10 | 146 | 2 | 136 | 4.43e-60 | 182 |
| MS.gene85561.t1 | AT4G25590 | 62.595 | 131 | 47 | 1 | 16 | 146 | 1 | 129 | 1.66e-59 | 181 |
| MS.gene85561.t1 | AT5G59880 | 55.797 | 138 | 61 | 0 | 10 | 147 | 2 | 139 | 2.69e-59 | 180 |
| MS.gene85561.t1 | AT3G46000 | 60.606 | 132 | 50 | 1 | 16 | 147 | 1 | 130 | 1.29e-58 | 178 |
| MS.gene85561.t1 | AT5G59880 | 48.551 | 138 | 56 | 1 | 10 | 147 | 2 | 124 | 3.37e-46 | 146 |
| MS.gene85561.t1 | AT2G16700 | 50.427 | 117 | 51 | 2 | 1 | 117 | 3 | 112 | 9.26e-37 | 122 |
| MS.gene85561.t1 | AT3G45990 | 42.754 | 138 | 68 | 3 | 16 | 147 | 1 | 133 | 2.32e-34 | 117 |
Find 30 sgRNAs with CRISPR-Local
Find 230 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTAGGGAAATGCATCTTC+TGG | 0.261866 | 1.3:+54581409 | MS.gene85561:intron |
| GCAGAGCGTAAGCACATTTC+AGG | 0.286465 | 1.3:+54581447 | MS.gene85561:CDS |
| GGGAATCCACTATGAGATTC+AGG | 0.356002 | 1.3:+54583430 | MS.gene85561:CDS |
| CAGGTTCAGAAGGGAGCTGC+AGG | 0.400251 | 1.3:+54583409 | MS.gene85561:CDS |
| GCTTTCAGAGTGGGAGTTGG+AGG | 0.419649 | 1.3:+54580056 | MS.gene85561:CDS |
| GTGATTAGTTCGCACGCTCC+TGG | 0.421098 | 1.3:-54583487 | None:intergenic |
| GATGTAGCATAAAGCATCTT+CGG | 0.454388 | 1.3:-54583380 | None:intergenic |
| ACTTCGAGTTCCATCTCTGT+TGG | 0.461999 | 1.3:-54583461 | None:intergenic |
| CTTCGAGTTCCATCTCTGTT+GGG | 0.469550 | 1.3:-54583460 | None:intergenic |
| TGTAGGGAAATGCATCTTCT+GGG | 0.504974 | 1.3:+54581410 | MS.gene85561:intron |
| CTTTCAGAGTGGGAGTTGGA+GGG | 0.516133 | 1.3:+54580057 | MS.gene85561:CDS |
| ATGGCTTTCAGAGTGGGAGT+TGG | 0.530306 | 1.3:+54580053 | MS.gene85561:CDS |
| TTTCAGAGTGGGAGTTGGAG+GGG | 0.532929 | 1.3:+54580058 | MS.gene85561:CDS |
| ATAGCTATGGCTTTCAGAGT+GGG | 0.535262 | 1.3:+54580047 | None:intergenic |
| GGGAAATGCATCTTCTGGGA+TGG | 0.538512 | 1.3:+54581414 | MS.gene85561:intron |
| CATCAAAGGACAGGTTCAGA+AGG | 0.548452 | 1.3:+54583399 | MS.gene85561:CDS |
| GGAAATGCATCTTCTGGGAT+GGG | 0.555903 | 1.3:+54581415 | MS.gene85561:CDS |
| GGCAACAGACCCAACAGAGA+TGG | 0.557284 | 1.3:+54583451 | MS.gene85561:CDS |
| GATGGAACTCGAAGTCCTCC+AGG | 0.560122 | 1.3:+54583469 | MS.gene85561:CDS |
| AAATCATCATAGCTCTCAGA+AGG | 0.561770 | 1.3:-54581556 | None:intergenic |
| GGACGAATACGAGCAACAGA+AGG | 0.570655 | 1.3:-54583359 | None:intergenic |
| CATAGCTATGGCTTTCAGAG+TGG | 0.573358 | 1.3:+54580046 | None:intergenic |
| CTGTTGCCTGAATCTCATAG+TGG | 0.585469 | 1.3:-54583436 | None:intergenic |
| TTTATGCTACATCAAAGGAC+AGG | 0.592719 | 1.3:+54583390 | MS.gene85561:CDS |
| GATGCTTTATGCTACATCAA+AGG | 0.601779 | 1.3:+54583385 | MS.gene85561:CDS |
| ATCAAAGGACAGGTTCAGAA+GGG | 0.621100 | 1.3:+54583400 | MS.gene85561:CDS |
| GCACATTTCAGGAATTGCAG+AGG | 0.661602 | 1.3:+54581458 | MS.gene85561:CDS |
| ATTAGTTCGCACGCTCCTGG+AGG | 0.663424 | 1.3:-54583484 | None:intergenic |
| AGGTTCAGAAGGGAGCTGCA+GGG | 0.689968 | 1.3:+54583410 | MS.gene85561:CDS |
| AATCATCATAGCTCTCAGAA+GGG | 0.724970 | 1.3:-54581555 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAACATGATTGAAAAATATA+TGG | - | chr1.3:54580304-54580323 | None:intergenic | 15.0% |
| !! | AACACAAAAATGAATAAAAA+AGG | - | chr1.3:54582936-54582955 | None:intergenic | 15.0% |
| !! | ACAATCTTAAAAAAAAACTT+TGG | + | chr1.3:54583064-54583083 | MS.gene85561:intron | 15.0% |
| !!! | ATTTGAATAAAATTTTCTGA+GGG | + | chr1.3:54580490-54580509 | MS.gene85561:intron | 15.0% |
| !!! | TAAAAAATGCTTTTGATATT+TGG | + | chr1.3:54582245-54582264 | MS.gene85561:intron | 15.0% |
| !!! | TTAATTAGTTTATATACTGT+AGG | + | chr1.3:54582974-54582993 | MS.gene85561:intron | 15.0% |
| !! | AAAAAATGATAGAATGAAGA+TGG | - | chr1.3:54580091-54580110 | None:intergenic | 20.0% |
| !! | AATAATTCATATGAATGGAA+AGG | - | chr1.3:54582477-54582496 | None:intergenic | 20.0% |
| !! | ACACTTAATAATCATATCAA+AGG | - | chr1.3:54580833-54580852 | None:intergenic | 20.0% |
| !! | ACATATGTATATATTGCATT+TGG | + | chr1.3:54581769-54581788 | MS.gene85561:intron | 20.0% |
| !! | ACTTAATAATCATATCAAAG+GGG | - | chr1.3:54580831-54580850 | None:intergenic | 20.0% |
| !! | AGACAAATATAATCAAGTAT+TGG | - | chr1.3:54582423-54582442 | None:intergenic | 20.0% |
| !! | AGTAAACTCAAGTAAAATAA+AGG | - | chr1.3:54583315-54583334 | None:intergenic | 20.0% |
| !! | ATACTTGATTATATTTGTCT+CGG | + | chr1.3:54582423-54582442 | MS.gene85561:intron | 20.0% |
| !! | ATCACAATAATTCATATGAA+TGG | - | chr1.3:54582482-54582501 | None:intergenic | 20.0% |
| !! | ATTTATATACATCAGAATCA+TGG | + | chr1.3:54583030-54583049 | MS.gene85561:intron | 20.0% |
| !! | CACTTAATAATCATATCAAA+GGG | - | chr1.3:54580832-54580851 | None:intergenic | 20.0% |
| !! | TGATATGATTATTAAGTGTT+GGG | + | chr1.3:54580834-54580853 | MS.gene85561:intron | 20.0% |
| !! | TTCATATGAATTATTGTGAT+AGG | + | chr1.3:54582482-54582501 | MS.gene85561:intron | 20.0% |
| !! | TTGATATGATTATTAAGTGT+TGG | + | chr1.3:54580833-54580852 | MS.gene85561:intron | 20.0% |
| !!! | AAATAAAAAACCCTTTTAGA+CGG | - | chr1.3:54582316-54582335 | None:intergenic | 20.0% |
| !!! | ATTTTACTTGAGTTTACTAA+TGG | + | chr1.3:54583317-54583336 | MS.gene85561:intron | 20.0% |
| !!! | CATTTGAATAAAATTTTCTG+AGG | + | chr1.3:54580489-54580508 | MS.gene85561:intron | 20.0% |
| !!! | GATTATTTTGGTTTGAAAAA+AGG | + | chr1.3:54581353-54581372 | MS.gene85561:intron | 20.0% |
| !!! | TAAAAAAGATTTTGCTCTTT+TGG | - | chr1.3:54581654-54581673 | None:intergenic | 20.0% |
| !!! | TTTGTGTTGATTTTTCTTTT+GGG | + | chr1.3:54582948-54582967 | MS.gene85561:intron | 20.0% |
| !!! | TTTTATTTTCTGCTTACATA+TGG | + | chr1.3:54583188-54583207 | MS.gene85561:intron | 20.0% |
| !!! | TTTTGTGTTGATTTTTCTTT+TGG | + | chr1.3:54582947-54582966 | MS.gene85561:intron | 20.0% |
| ! | AAACAACAATCACATGAATT+TGG | - | chr1.3:54582452-54582471 | None:intergenic | 25.0% |
| ! | AACTAAATCACCAATCAAAA+AGG | - | chr1.3:54581178-54581197 | None:intergenic | 25.0% |
| ! | AAGTTAAATGTAGATAGTGT+AGG | + | chr1.3:54580926-54580945 | MS.gene85561:intron | 25.0% |
| ! | AATTGATGAGAAAAAGAAAG+AGG | + | chr1.3:54581510-54581529 | MS.gene85561:CDS | 25.0% |
| ! | AATTTCGTGTAACTAATATG+TGG | + | chr1.3:54581381-54581400 | MS.gene85561:intron | 25.0% |
| ! | ACTAAATCACCAATCAAAAA+GGG | - | chr1.3:54581177-54581196 | None:intergenic | 25.0% |
| ! | AGCATATTGCTAATTTACTA+GGG | + | chr1.3:54582047-54582066 | MS.gene85561:intron | 25.0% |
| ! | AGTATAAAGTGAGAAAATCA+AGG | - | chr1.3:54580986-54581005 | None:intergenic | 25.0% |
| ! | ATACAGAATTAACAGTGATT+TGG | - | chr1.3:54582843-54582862 | None:intergenic | 25.0% |
| ! | CAATTGCAGAATATTATTGA+TGG | - | chr1.3:54582808-54582827 | None:intergenic | 25.0% |
| ! | CATAGAAAGAATGCAAAAAT+GGG | - | chr1.3:54580707-54580726 | None:intergenic | 25.0% |
| ! | GTATAAAGTGAGAAAATCAA+GGG | - | chr1.3:54580985-54581004 | None:intergenic | 25.0% |
| ! | TAATTCTGTATGTTTGGTAT+CGG | + | chr1.3:54582852-54582871 | MS.gene85561:intron | 25.0% |
| ! | TCCAATGATGTTAAGAAATT+AGG | + | chr1.3:54580594-54580613 | MS.gene85561:intron | 25.0% |
| ! | TGATAAACTAATTGCCTATT+TGG | - | chr1.3:54582528-54582547 | None:intergenic | 25.0% |
| !! | AAACATATATCTTCGCATTT+TGG | - | chr1.3:54580565-54580584 | None:intergenic | 25.0% |
| !!! | ACTTTAGTATTCTTTTTTGG+GGG | + | chr1.3:54581326-54581345 | MS.gene85561:intron | 25.0% |
| !!! | AGGACTTTAGTATTCTTTTT+TGG | + | chr1.3:54581323-54581342 | MS.gene85561:intron | 25.0% |
| !!! | ATTTTTTTGCAATCCACTAT+TGG | - | chr1.3:54583106-54583125 | None:intergenic | 25.0% |
| !!! | CTGGAATTTGAAATGATTTT+TGG | - | chr1.3:54582217-54582236 | None:intergenic | 25.0% |
| !!! | GACTTTAGTATTCTTTTTTG+GGG | + | chr1.3:54581325-54581344 | MS.gene85561:intron | 25.0% |
| !!! | GGACTTTAGTATTCTTTTTT+GGG | + | chr1.3:54581324-54581343 | MS.gene85561:intron | 25.0% |
| !!! | TAATATGTGGATTTGTTGTA+GGG | + | chr1.3:54581394-54581413 | MS.gene85561:intron | 25.0% |
| !!! | TCAGTTTTAATTTTGCTTTG+TGG | + | chr1.3:54580237-54580256 | MS.gene85561:intron | 25.0% |
| !!! | TCTGATGTATTATTTCTGTT+TGG | + | chr1.3:54582699-54582718 | MS.gene85561:intron | 25.0% |
| !!! | TTGTTTTTGTCGGATTTTAT+TGG | + | chr1.3:54580169-54580188 | MS.gene85561:intron | 25.0% |
| !!! | TTTTGGTTTGAAAAAAGGAT+TGG | + | chr1.3:54581358-54581377 | MS.gene85561:intron | 25.0% |
| AAATCAAACCAAAATCAGCA+TGG | - | chr1.3:54580137-54580156 | None:intergenic | 30.0% | |
| AACCAGATACTAAAAGAAAG+GGG | - | chr1.3:54582385-54582404 | None:intergenic | 30.0% | |
| AAGAAAAACCGCATAATATG+AGG | - | chr1.3:54580269-54580288 | None:intergenic | 30.0% | |
| ACAACCAGATACTAAAAGAA+AGG | - | chr1.3:54582387-54582406 | None:intergenic | 30.0% | |
| AGAAGTTTATGACTACACTT+CGG | - | chr1.3:54581033-54581052 | None:intergenic | 30.0% | |
| ATGAGATATATCTTACTCCA+GGG | - | chr1.3:54581131-54581150 | None:intergenic | 30.0% | |
| ATGCCTATTCTTAATCTTCA+TGG | + | chr1.3:54581959-54581978 | MS.gene85561:intron | 30.0% | |
| ATTATGGTATTGTAGCGTAA+CGG | - | chr1.3:54583135-54583154 | None:intergenic | 30.0% | |
| CAACCAGATACTAAAAGAAA+GGG | - | chr1.3:54582386-54582405 | None:intergenic | 30.0% | |
| CACTGTTAATTCTGTATGTT+TGG | + | chr1.3:54582846-54582865 | MS.gene85561:intron | 30.0% | |
| CCATAGAAAGAATGCAAAAA+TGG | - | chr1.3:54580708-54580727 | None:intergenic | 30.0% | |
| CTAAATCACCAATCAAAAAG+GGG | - | chr1.3:54581176-54581195 | None:intergenic | 30.0% | |
| GAGCATATTGCTAATTTACT+AGG | + | chr1.3:54582046-54582065 | MS.gene85561:intron | 30.0% | |
| GCCTAATTTCTTAACATCAT+TGG | - | chr1.3:54580598-54580617 | None:intergenic | 30.0% | |
| TATTCTTAATCTTCATGGGT+GGG | + | chr1.3:54581964-54581983 | MS.gene85561:intron | 30.0% | |
| TGCCTATTCTTAATCTTCAT+GGG | + | chr1.3:54581960-54581979 | MS.gene85561:intron | 30.0% | |
| TGTCAAATTATAACTTCCTC+TGG | - | chr1.3:54583280-54583299 | None:intergenic | 30.0% | |
| TGTTAGAAGAATGTAGGAAA+CGG | + | chr1.3:54582577-54582596 | MS.gene85561:intron | 30.0% | |
| TTGTCAAATGAAATCTTGTG+CGG | + | chr1.3:54580624-54580643 | MS.gene85561:intron | 30.0% | |
| ! | CTAATGGATAATTGCTTTAC+AGG | + | chr1.3:54583333-54583352 | MS.gene85561:intron | 30.0% |
| ! | GCATATCTACAATCATTTTC+AGG | - | chr1.3:54581595-54581614 | None:intergenic | 30.0% |
| ! | TGCTTTTGATATTTGGCAAA+AGG | + | chr1.3:54582252-54582271 | MS.gene85561:intron | 30.0% |
| ! | TTATACTCTAGTCACTTTAG+AGG | + | chr1.3:54580999-54581018 | MS.gene85561:intron | 30.0% |
| ! | TTGAGTTACAAGTAGCTTTA+AGG | + | chr1.3:54580678-54580697 | MS.gene85561:intron | 30.0% |
| ! | TTGCTCAATTTTTCTTGCAT+TGG | + | chr1.3:54581727-54581746 | MS.gene85561:intron | 30.0% |
| !! | CCATTTTTGCATTCTTTCTA+TGG | + | chr1.3:54580705-54580724 | MS.gene85561:intron | 30.0% |
| !! | CTAATATGTGGATTTGTTGT+AGG | + | chr1.3:54581393-54581412 | MS.gene85561:intron | 30.0% |
| !!! | AGCATTTTTTATCAAGAGTC+TGG | - | chr1.3:54582236-54582255 | None:intergenic | 30.0% |
| !!! | GCAAAATCTTTTTTATCGCA+TGG | + | chr1.3:54581659-54581678 | MS.gene85561:CDS | 30.0% |
| !!! | TCGAATGTTGTTGTTTTTGT+CGG | + | chr1.3:54580159-54580178 | MS.gene85561:intron | 30.0% |
| AAAATAATGTGACGTGGTAG+GGG | + | chr1.3:54582604-54582623 | MS.gene85561:intron | 35.0% | |
| AAAGACAGAAATCTGAACGA+GGG | + | chr1.3:54581846-54581865 | MS.gene85561:intron | 35.0% | |
| AAATCATCATAGCTCTCAGA+AGG | - | chr1.3:54581559-54581578 | None:intergenic | 35.0% | |
| AACGAAAGTAGATTGCAGAA+AGG | - | chr1.3:54582784-54582803 | None:intergenic | 35.0% | |
| AATCATCATAGCTCTCAGAA+GGG | - | chr1.3:54581558-54581577 | None:intergenic | 35.0% | |
| AATGAGGAAAACAGCATGTT+TGG | - | chr1.3:54581282-54581301 | None:intergenic | 35.0% | |
| ACGAAAGTAGATTGCAGAAA+GGG | - | chr1.3:54582783-54582802 | None:intergenic | 35.0% | |
| ACTATAGTACCTTGTTGAAC+TGG | + | chr1.3:54582162-54582181 | MS.gene85561:intron | 35.0% | |
| AGCAGAAAATAGGGACATTA+TGG | - | chr1.3:54583151-54583170 | None:intergenic | 35.0% | |
| ATACCATATATGTAGCCACT+GGG | - | chr1.3:54582896-54582915 | None:intergenic | 35.0% | |
| CACCCATGAAGATTAAGAAT+AGG | - | chr1.3:54581965-54581984 | None:intergenic | 35.0% | |
| CATACCAGTTGATTATAGCA+AGG | - | chr1.3:54582346-54582365 | None:intergenic | 35.0% | |
| CATGAGATATATCTTACTCC+AGG | - | chr1.3:54581132-54581151 | None:intergenic | 35.0% | |
| CTATAGTACCTTGTTGAACT+GGG | + | chr1.3:54582163-54582182 | MS.gene85561:intron | 35.0% | |
| CTATTCTTAATCTTCATGGG+TGG | + | chr1.3:54581963-54581982 | MS.gene85561:intron | 35.0% | |
| CTGGGATTCATTTCATTGAA+AGG | + | chr1.3:54581303-54581322 | MS.gene85561:intron | 35.0% | |
| GAAAATAATGTGACGTGGTA+GGG | + | chr1.3:54582603-54582622 | MS.gene85561:intron | 35.0% | |
| GATGAGAATGTGATCCAAAT+AGG | + | chr1.3:54582511-54582530 | MS.gene85561:intron | 35.0% | |
| GATGCTTTATGCTACATCAA+AGG | + | chr1.3:54583385-54583404 | MS.gene85561:CDS | 35.0% | |
| GCATGTCTTTAGTACTTTGT+TGG | + | chr1.3:54580512-54580531 | MS.gene85561:intron | 35.0% | |
| GTGATTGAATGTACATGTGT+CGG | + | chr1.3:54580795-54580814 | MS.gene85561:intron | 35.0% | |
| GTGTGATGTTAGAAGAATGT+AGG | + | chr1.3:54582571-54582590 | MS.gene85561:intron | 35.0% | |
| GTTTATGCAAACGGTTCAAA+CGG | - | chr1.3:54582287-54582306 | None:intergenic | 35.0% | |
| TAAACTAGTGTTGCCAATAG+TGG | + | chr1.3:54583090-54583109 | MS.gene85561:intron | 35.0% | |
| TATAGTACCTTGTTGAACTG+GGG | + | chr1.3:54582164-54582183 | MS.gene85561:intron | 35.0% | |
| TCAGAGAAAATACACTTCTC+TGG | - | chr1.3:54582725-54582744 | None:intergenic | 35.0% | |
| TCTTTAGTACTTTGTTGGAC+AGG | + | chr1.3:54580517-54580536 | MS.gene85561:intron | 35.0% | |
| TGAATTATTGTGATAGGACC+CGG | + | chr1.3:54582488-54582507 | MS.gene85561:intron | 35.0% | |
| TGAGAAAAAGAAAGAGGTTG+TGG | + | chr1.3:54581516-54581535 | MS.gene85561:CDS | 35.0% | |
| TTATGACTACACTTCGGATT+TGG | - | chr1.3:54581027-54581046 | None:intergenic | 35.0% | |
| TTCTCTGCAAGCAGAAAATA+GGG | - | chr1.3:54583160-54583179 | None:intergenic | 35.0% | |
| TTTATATACTGTAGGCATCC+TGG | + | chr1.3:54582982-54583001 | MS.gene85561:intron | 35.0% | |
| TTTATGCTACATCAAAGGAC+AGG | + | chr1.3:54583390-54583409 | MS.gene85561:CDS | 35.0% | |
| TTTCTCTGCAAGCAGAAAAT+AGG | - | chr1.3:54583161-54583180 | None:intergenic | 35.0% | |
| ! | ACAACCTTGCTATAATCAAC+TGG | + | chr1.3:54582339-54582358 | MS.gene85561:intron | 35.0% |
| ! | CTGTATTTTCGAATGGAGTA+GGG | + | chr1.3:54582081-54582100 | MS.gene85561:intron | 35.0% |
| ! | GATGTAGCATAAAGCATCTT+CGG | - | chr1.3:54583383-54583402 | None:intergenic | 35.0% |
| ! | GGTTGATTCCTCATATTATG+CGG | + | chr1.3:54580258-54580277 | MS.gene85561:intron | 35.0% |
| ! | TACAGTTTCCCCTTTTTGAT+TGG | + | chr1.3:54581165-54581184 | MS.gene85561:intron | 35.0% |
| ! | TGTATTTTCGAATGGAGTAG+GGG | + | chr1.3:54582082-54582101 | MS.gene85561:intron | 35.0% |
| ! | TGTGACCATCTTGTTATAAG+CGG | + | chr1.3:54582648-54582667 | MS.gene85561:intron | 35.0% |
| ! | TTCTTCCCACTACAAGTTTT+GGG | + | chr1.3:54580212-54580231 | MS.gene85561:intron | 35.0% |
| ! | TTTTCTGCTTACATATGGAG+AGG | + | chr1.3:54583193-54583212 | MS.gene85561:intron | 35.0% |
| !! | AGAAGTGTATTTTCTCTGAG+AGG | + | chr1.3:54582726-54582745 | MS.gene85561:intron | 35.0% |
| !! | GATTATTAAGTGTTGGGATC+CGG | + | chr1.3:54580840-54580859 | MS.gene85561:intron | 35.0% |
| !! | TCTACAATCATTTTCAGGCA+AGG | - | chr1.3:54581590-54581609 | None:intergenic | 35.0% |
| !! | TTTGGGGGAGTTGATTATTT+TGG | + | chr1.3:54581341-54581360 | MS.gene85561:intron | 35.0% |
| AAACCCATAGCCGTCTAAAA+GGG | + | chr1.3:54582303-54582322 | MS.gene85561:intron | 40.0% | |
| AACGCAACACGGTAAATGAA+AGG | - | chr1.3:54583254-54583273 | None:intergenic | 40.0% | |
| AAGTGAATTGCCCACTTTAG+AGG | - | chr1.3:54580868-54580887 | None:intergenic | 40.0% | |
| AGAAGAATGTAGGAAACGGA+GGG | + | chr1.3:54582581-54582600 | MS.gene85561:intron | 40.0% | |
| AGTTGTCCAAATCCATTGTG+TGG | + | chr1.3:54582547-54582566 | MS.gene85561:intron | 40.0% | |
| ATCAAAGGACAGGTTCAGAA+GGG | + | chr1.3:54583400-54583419 | MS.gene85561:CDS | 40.0% | |
| CAAAGACAGAAATCTGAACG+AGG | + | chr1.3:54581845-54581864 | MS.gene85561:intron | 40.0% | |
| CTCCATTCGAAAATACAGCT+TGG | - | chr1.3:54582079-54582098 | None:intergenic | 40.0% | |
| CTCGTTCAGATTTCTGTCTT+TGG | - | chr1.3:54581847-54581866 | None:intergenic | 40.0% | |
| GAATTATTGTGATAGGACCC+GGG | + | chr1.3:54582489-54582508 | MS.gene85561:intron | 40.0% | |
| GATACCATATATGTAGCCAC+TGG | - | chr1.3:54582897-54582916 | None:intergenic | 40.0% | |
| GGAAAATAATGTGACGTGGT+AGG | + | chr1.3:54582602-54582621 | MS.gene85561:intron | 40.0% | |
| GGAAACTGTAAATATTCCCG+GGG | - | chr1.3:54581155-54581174 | None:intergenic | 40.0% | |
| GGGAAACTGTAAATATTCCC+GGG | - | chr1.3:54581156-54581175 | None:intergenic | 40.0% | |
| GGGGAAACTGTAAATATTCC+CGG | - | chr1.3:54581157-54581176 | None:intergenic | 40.0% | |
| GTAAGATATATCTCATGCCC+CGG | + | chr1.3:54581135-54581154 | MS.gene85561:intron | 40.0% | |
| GTTGTCCAAATCCATTGTGT+GGG | + | chr1.3:54582548-54582567 | MS.gene85561:intron | 40.0% | |
| TAAACCCATAGCCGTCTAAA+AGG | + | chr1.3:54582302-54582321 | MS.gene85561:intron | 40.0% | |
| TAAGATATATCTCATGCCCC+GGG | + | chr1.3:54581136-54581155 | MS.gene85561:intron | 40.0% | |
| TAGAAGAATGTAGGAAACGG+AGG | + | chr1.3:54582580-54582599 | MS.gene85561:intron | 40.0% | |
| TATCCCAGTGGCTACATATA+TGG | + | chr1.3:54582890-54582909 | MS.gene85561:intron | 40.0% | |
| TCAAAGCAACTTCATGCATG+AGG | - | chr1.3:54580662-54580681 | None:intergenic | 40.0% | |
| TCAGCATTGTCAGTTGAGAT+AGG | - | chr1.3:54580359-54580378 | None:intergenic | 40.0% | |
| TGAAATGAATCCCAGCAATG+AGG | - | chr1.3:54581298-54581317 | None:intergenic | 40.0% | |
| TGAGACCCAAAACTTGTAGT+GGG | - | chr1.3:54580220-54580239 | None:intergenic | 40.0% | |
| TGTAGGGAAATGCATCTTCT+GGG | + | chr1.3:54581410-54581429 | MS.gene85561:intron | 40.0% | |
| TTGTAGGGAAATGCATCTTC+TGG | + | chr1.3:54581409-54581428 | MS.gene85561:intron | 40.0% | |
| TTGTCCAAATCCATTGTGTG+GGG | + | chr1.3:54582549-54582568 | MS.gene85561:intron | 40.0% | |
| TTTGGATCACATTCTCATCC+CGG | - | chr1.3:54582510-54582529 | None:intergenic | 40.0% | |
| ! | AAAACCCTTTTAGACGGCTA+TGG | - | chr1.3:54582310-54582329 | None:intergenic | 40.0% |
| ! | AAACCCTTTTAGACGGCTAT+GGG | - | chr1.3:54582309-54582328 | None:intergenic | 40.0% |
| ! | CCAAAATCAGCATGGTCTTA+AGG | - | chr1.3:54580129-54580148 | None:intergenic | 40.0% |
| ! | GACCCCTTTCTTTTAGTATC+TGG | + | chr1.3:54582380-54582399 | MS.gene85561:intron | 40.0% |
| ! | GCTGTATTTTCGAATGGAGT+AGG | + | chr1.3:54582080-54582099 | MS.gene85561:intron | 40.0% |
| ! | GTGACCATCTTGTTATAAGC+GGG | + | chr1.3:54582649-54582668 | MS.gene85561:intron | 40.0% |
| ! | GTTCTTCCCACTACAAGTTT+TGG | + | chr1.3:54580211-54580230 | MS.gene85561:intron | 40.0% |
| ! | TGCCAAGCTGTATTTTCGAA+TGG | + | chr1.3:54582074-54582093 | MS.gene85561:intron | 40.0% |
| !! | GTCGGATTTTATTGGTTGCA+TGG | + | chr1.3:54580177-54580196 | MS.gene85561:intron | 40.0% |
| !! | TGTTTGGCAGAGCATTCTTT+TGG | - | chr1.3:54581266-54581285 | None:intergenic | 40.0% |
| !!! | ATGCTGTTTTCCTCATTGCT+GGG | + | chr1.3:54581285-54581304 | MS.gene85561:intron | 40.0% |
| !!! | CCTTAAGACCATGCTGATTT+TGG | + | chr1.3:54580126-54580145 | MS.gene85561:intron | 40.0% |
| AACCTGTGAAGCATAGACAC+TGG | + | chr1.3:54580735-54580754 | MS.gene85561:intron | 45.0% | |
| AGATTGTCGATCTTGAGACC+AGG | - | chr1.3:54583003-54583022 | None:intergenic | 45.0% | |
| ATTGCTACTAGCGTCAGTGT+CGG | - | chr1.3:54580769-54580788 | None:intergenic | 45.0% | |
| CATCAAAGGACAGGTTCAGA+AGG | + | chr1.3:54583399-54583418 | MS.gene85561:CDS | 45.0% | |
| CCTACCCGCTTATAACAAGA+TGG | - | chr1.3:54582656-54582675 | None:intergenic | 45.0% | |
| CGGCTATGGGTTTATGCAAA+CGG | - | chr1.3:54582296-54582315 | None:intergenic | 45.0% | |
| CTGAGACCCAAAACTTGTAG+TGG | - | chr1.3:54580221-54580240 | None:intergenic | 45.0% | |
| CTGTTGCCTGAATCTCATAG+TGG | - | chr1.3:54583439-54583458 | None:intergenic | 45.0% | |
| GAGGTTGTGGTCGAAAAAAC+TGG | + | chr1.3:54581529-54581548 | MS.gene85561:CDS | 45.0% | |
| GCAAAGTGTGAAGAGAGAGA+TGG | - | chr1.3:54583219-54583238 | None:intergenic | 45.0% | |
| GCACATTTCAGGAATTGCAG+AGG | + | chr1.3:54581458-54581477 | MS.gene85561:CDS | 45.0% | |
| GGAGGGAAAATAATGTGACG+TGG | + | chr1.3:54582598-54582617 | MS.gene85561:intron | 45.0% | |
| GGGAATCCACTATGAGATTC+AGG | + | chr1.3:54583430-54583449 | MS.gene85561:CDS | 45.0% | |
| GTTGTGGTCGAAAAAACTGG+AGG | + | chr1.3:54581532-54581551 | MS.gene85561:CDS | 45.0% | |
| TAACATCACACCCCACACAA+TGG | - | chr1.3:54582562-54582581 | None:intergenic | 45.0% | |
| TTGGATCACATTCTCATCCC+GGG | - | chr1.3:54582509-54582528 | None:intergenic | 45.0% | |
| ! | ACTTCGAGTTCCATCTCTGT+TGG | - | chr1.3:54583464-54583483 | None:intergenic | 45.0% |
| ! | ATTGCCCACTTTAGAGGATC+CGG | - | chr1.3:54580862-54580881 | None:intergenic | 45.0% |
| ! | CCATCTTGTTATAAGCGGGT+AGG | + | chr1.3:54582653-54582672 | MS.gene85561:intron | 45.0% |
| ! | CTTCGAGTTCCATCTCTGTT+GGG | - | chr1.3:54583463-54583482 | None:intergenic | 45.0% |
| ! | TCCTCTGGTTTAACGCAACA+CGG | - | chr1.3:54583265-54583284 | None:intergenic | 45.0% |
| ! | TCTTGTTATAAGCGGGTAGG+AGG | + | chr1.3:54582656-54582675 | MS.gene85561:intron | 45.0% |
| !! | GGAAATGCATCTTCTGGGAT+GGG | + | chr1.3:54581415-54581434 | MS.gene85561:CDS | 45.0% |
| !!! | CATGCTGTTTTCCTCATTGC+TGG | + | chr1.3:54581284-54581303 | MS.gene85561:intron | 45.0% |
| AATGTGACGTGGTAGGGGAT+GGG | + | chr1.3:54582609-54582628 | MS.gene85561:intron | 50.0% | |
| ACCGTGTTGCGTTAAACCAG+AGG | + | chr1.3:54583261-54583280 | MS.gene85561:intron | 50.0% | |
| ACGATCGTTTCCGAGCGAAA+GGG | - | chr1.3:54580396-54580415 | None:intergenic | 50.0% | |
| ATGCAGTCCCCAGTTCAACA+AGG | - | chr1.3:54582174-54582193 | None:intergenic | 50.0% | |
| ATGGCTTTCAGAGTGGGAGT+TGG | + | chr1.3:54580053-54580072 | MS.gene85561:CDS | 50.0% | |
| CGCATCATACTGTATCCCAG+TGG | + | chr1.3:54582878-54582897 | MS.gene85561:intron | 50.0% | |
| CTTTCAGAGTGGGAGTTGGA+GGG | + | chr1.3:54580057-54580076 | MS.gene85561:CDS | 50.0% | |
| GCAGAGCGTAAGCACATTTC+AGG | + | chr1.3:54581447-54581466 | MS.gene85561:CDS | 50.0% | |
| GGACGAATACGAGCAACAGA+AGG | - | chr1.3:54583362-54583381 | None:intergenic | 50.0% | |
| GTCCAGTGTCTATGCTTCAC+AGG | - | chr1.3:54580740-54580759 | None:intergenic | 50.0% | |
| GTGTGTTAGACCCTTTCGCT+CGG | + | chr1.3:54580383-54580402 | MS.gene85561:intron | 50.0% | |
| GTTATAAGCGGGTAGGAGGA+GGG | + | chr1.3:54582660-54582679 | MS.gene85561:intron | 50.0% | |
| TAATGTGACGTGGTAGGGGA+TGG | + | chr1.3:54582608-54582627 | MS.gene85561:intron | 50.0% | |
| TGAGAGGAGCCTAGCTATGT+GGG | + | chr1.3:54582742-54582761 | MS.gene85561:intron | 50.0% | |
| TGTTATAAGCGGGTAGGAGG+AGG | + | chr1.3:54582659-54582678 | MS.gene85561:intron | 50.0% | |
| TTTCAGAGTGGGAGTTGGAG+GGG | + | chr1.3:54580058-54580077 | MS.gene85561:CDS | 50.0% | |
| ! | CACACCCCACACAATGGATT+TGG | - | chr1.3:54582556-54582575 | None:intergenic | 50.0% |
| ! | GGGAAATGCATCTTCTGGGA+TGG | + | chr1.3:54581414-54581433 | MS.gene85561:intron | 50.0% |
| ! | TGCATGCACATTTTGTGCCC+TGG | + | chr1.3:54581111-54581130 | MS.gene85561:intron | 50.0% |
| !! | GGATCCGGATCCTCTAAAGT+GGG | + | chr1.3:54580855-54580874 | MS.gene85561:intron | 50.0% |
| AGGTTCAGAAGGGAGCTGCA+GGG | + | chr1.3:54583410-54583429 | MS.gene85561:CDS | 55.0% | |
| ATGTGACGTGGTAGGGGATG+GGG | + | chr1.3:54582610-54582629 | MS.gene85561:intron | 55.0% | |
| CACGATCGTTTCCGAGCGAA+AGG | - | chr1.3:54580397-54580416 | None:intergenic | 55.0% | |
| CCTAGCTATGTGGGTAGAGG+AGG | + | chr1.3:54582751-54582770 | MS.gene85561:intron | 55.0% | |
| CCTCCTCTACCCACATAGCT+AGG | - | chr1.3:54582754-54582773 | None:intergenic | 55.0% | |
| CTGAGAGGAGCCTAGCTATG+TGG | + | chr1.3:54582741-54582760 | MS.gene85561:intron | 55.0% | |
| GAGCCTAGCTATGTGGGTAG+AGG | + | chr1.3:54582748-54582767 | MS.gene85561:intron | 55.0% | |
| GATGGAACTCGAAGTCCTCC+AGG | + | chr1.3:54583469-54583488 | MS.gene85561:CDS | 55.0% | |
| GCTTTCAGAGTGGGAGTTGG+AGG | + | chr1.3:54580056-54580075 | MS.gene85561:CDS | 55.0% | |
| GGCAACAGACCCAACAGAGA+TGG | + | chr1.3:54583451-54583470 | MS.gene85561:CDS | 55.0% | |
| ! | GGGATCCGGATCCTCTAAAG+TGG | + | chr1.3:54580854-54580873 | MS.gene85561:intron | 55.0% |
| CAGGTTCAGAAGGGAGCTGC+AGG | + | chr1.3:54583409-54583428 | MS.gene85561:CDS | 60.0% | |
| GGGTAGGAGGAGGGAGAGAA+AGG | + | chr1.3:54582669-54582688 | MS.gene85561:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 54580053 | 54583505 | 54580053 | ID=MS.gene85561 |
| chr1.3 | mRNA | 54580053 | 54583505 | 54580053 | ID=MS.gene85561.t1;Parent=MS.gene85561 |
| chr1.3 | exon | 54580053 | 54580079 | 54580053 | ID=MS.gene85561.t1.exon1;Parent=MS.gene85561.t1 |
| chr1.3 | CDS | 54580053 | 54580079 | 54580053 | ID=cds.MS.gene85561.t1;Parent=MS.gene85561.t1 |
| chr1.3 | exon | 54581415 | 54581680 | 54581415 | ID=MS.gene85561.t1.exon2;Parent=MS.gene85561.t1 |
| chr1.3 | CDS | 54581415 | 54581680 | 54581415 | ID=cds.MS.gene85561.t1;Parent=MS.gene85561.t1 |
| chr1.3 | exon | 54583355 | 54583505 | 54583355 | ID=MS.gene85561.t1.exon3;Parent=MS.gene85561.t1 |
| chr1.3 | CDS | 54583355 | 54583505 | 54583355 | ID=cds.MS.gene85561.t1;Parent=MS.gene85561.t1 |
| Gene Sequence |
| Protein sequence |
