Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85562.t1 | XP_013468735.1 | 97.3 | 630 | 17 | 0 | 1 | 630 | 1 | 630 | 0.00E+00 | 1265.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85562.t1 | Q96524 | 64.6 | 630 | 192 | 7 | 5 | 628 | 6 | 610 | 1.1e-235 | 817.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85562.t1 | A0A072VLR3 | 97.3 | 630 | 17 | 0 | 1 | 630 | 1 | 630 | 0.0e+00 | 1265.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050021 | MS.gene85562 | 0.806159 | 9.42E-50 | -1.69E-46 |
| MS.gene052190 | MS.gene85562 | 0.805401 | 1.36E-49 | -1.69E-46 |
| MS.gene052447 | MS.gene85562 | 0.801899 | 7.24E-49 | -1.69E-46 |
| MS.gene054124 | MS.gene85562 | 0.849028 | 4.20E-60 | -1.69E-46 |
| MS.gene057060 | MS.gene85562 | 0.801874 | 7.33E-49 | -1.69E-46 |
| MS.gene057598 | MS.gene85562 | 0.813946 | 1.98E-51 | -1.69E-46 |
| MS.gene059015 | MS.gene85562 | 0.804602 | 2.00E-49 | -1.69E-46 |
| MS.gene059584 | MS.gene85562 | 0.808287 | 3.34E-50 | -1.69E-46 |
| MS.gene060521 | MS.gene85562 | 0.802192 | 6.30E-49 | -1.69E-46 |
| MS.gene060553 | MS.gene85562 | 0.810463 | 1.14E-50 | -1.69E-46 |
| MS.gene060918 | MS.gene85562 | 0.805418 | 1.35E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85562.t1 | MTR_1g076190 | 97.937 | 630 | 13 | 0 | 1 | 630 | 1 | 630 | 0.0 | 1281 |
| MS.gene85562.t1 | MTR_1g076190 | 97.930 | 628 | 13 | 0 | 1 | 628 | 1 | 628 | 0.0 | 1278 |
| MS.gene85562.t1 | MTR_1g043190 | 76.910 | 602 | 132 | 6 | 4 | 601 | 2 | 600 | 0.0 | 934 |
| MS.gene85562.t1 | MTR_5g063920 | 55.392 | 612 | 246 | 7 | 2 | 596 | 5 | 606 | 0.0 | 694 |
| MS.gene85562.t1 | MTR_5g063920 | 55.392 | 612 | 246 | 7 | 2 | 596 | 5 | 606 | 0.0 | 694 |
| MS.gene85562.t1 | MTR_5g063920 | 53.795 | 448 | 183 | 5 | 165 | 596 | 3 | 442 | 3.22e-165 | 483 |
| MS.gene85562.t1 | MTR_4g011370 | 28.200 | 539 | 333 | 18 | 1 | 510 | 11 | 524 | 5.86e-51 | 185 |
| MS.gene85562.t1 | MTR_4g011370 | 28.138 | 494 | 305 | 16 | 1 | 466 | 11 | 482 | 8.17e-48 | 175 |
| MS.gene85562.t1 | MTR_4g011370 | 27.413 | 518 | 305 | 19 | 1 | 493 | 11 | 482 | 5.07e-43 | 162 |
| MS.gene85562.t1 | MTR_3g108700 | 28.163 | 490 | 278 | 18 | 2 | 446 | 94 | 554 | 1.41e-28 | 121 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85562.t1 | AT1G04400 | 69.340 | 561 | 159 | 4 | 5 | 562 | 6 | 556 | 0.0 | 809 |
| MS.gene85562.t1 | AT1G04400 | 69.340 | 561 | 159 | 4 | 5 | 562 | 6 | 556 | 0.0 | 809 |
| MS.gene85562.t1 | AT4G08920 | 57.774 | 566 | 222 | 6 | 7 | 563 | 15 | 572 | 0.0 | 669 |
| MS.gene85562.t1 | AT3G15620 | 29.771 | 524 | 320 | 17 | 6 | 501 | 26 | 529 | 4.03e-54 | 194 |
| MS.gene85562.t1 | AT5G24850 | 30.526 | 475 | 268 | 20 | 2 | 444 | 82 | 526 | 6.74e-35 | 140 |
| MS.gene85562.t1 | AT3G15620 | 29.048 | 420 | 254 | 15 | 6 | 397 | 26 | 429 | 1.17e-32 | 131 |
Find 155 sgRNAs with CRISPR-Local
Find 271 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAGGCTTTAACAGAATTTA+TGG | 0.120110 | 1.3:+54599708 | MS.gene85562:CDS |
| TCAGAAAGTGCCAGCATTTC+AGG | 0.164857 | 1.3:+54601607 | MS.gene85562:CDS |
| TAAAATTGTCCTTCCTCTTT+AGG | 0.172518 | 1.3:-54598492 | None:intergenic |
| GCCATATCTATATCAATTAT+TGG | 0.178502 | 1.3:-54601413 | None:intergenic |
| CATTTCCCACATCTTGAATA+TGG | 0.213847 | 1.3:-54601456 | None:intergenic |
| TGCCTTACATATTCTCCTTC+TGG | 0.214099 | 1.3:-54601278 | None:intergenic |
| AATGGGGAATGAAGTATTTC+TGG | 0.219485 | 1.3:+54600178 | MS.gene85562:CDS |
| CTGTATTCCCTGTGTTTATA+TGG | 0.246769 | 1.3:+54598466 | MS.gene85562:CDS |
| CTAATAGGTAGTTCATTCTT+AGG | 0.252046 | 1.3:-54601632 | None:intergenic |
| CCTCATCTTCAAATCTAAAA+TGG | 0.261221 | 1.3:+54601831 | MS.gene85562:CDS |
| GTATTTCTGGGACACGCTTT+TGG | 0.272715 | 1.3:+54600191 | MS.gene85562:CDS |
| GAACCATTGTTTGGTTTAGA+AGG | 0.277961 | 1.3:+54598391 | MS.gene85562:CDS |
| TTATCTGTGAAAAGCTATAA+TGG | 0.296187 | 1.3:+54599168 | MS.gene85562:CDS |
| AAATGTTCAATAGAGGATTT+AGG | 0.296422 | 1.3:+54599610 | MS.gene85562:CDS |
| ACTCATGAGAGAGCACTTCT+TGG | 0.306648 | 1.3:+54599973 | MS.gene85562:CDS |
| TCCTTAAGGAGGACAACTTT+TGG | 0.310889 | 1.3:-54601551 | None:intergenic |
| CTAAGAATGAACTACCTATT+AGG | 0.318143 | 1.3:+54601633 | MS.gene85562:CDS |
| CAAGCAGCATCAAAAGCTTC+TGG | 0.338602 | 1.3:+54601479 | MS.gene85562:CDS |
| TGTTGCTTCTACCTTGGAAA+TGG | 0.350799 | 1.3:+54600160 | MS.gene85562:CDS |
| TGCAAGCATCTCTGCCAAAA+AGG | 0.354280 | 1.3:-54599255 | None:intergenic |
| TATCTGTGAAAAGCTATAAT+GGG | 0.355434 | 1.3:+54599169 | MS.gene85562:CDS |
| CTGTAGAGCAAGTGTCTTCA+TGG | 0.357346 | 1.3:-54601742 | None:intergenic |
| CTGGATTGTCCTCAATTCTA+AGG | 0.360401 | 1.3:-54598416 | None:intergenic |
| TCCAAAAGTTGTCCTCCTTA+AGG | 0.363395 | 1.3:+54601550 | MS.gene85562:CDS |
| CTCTTAGTCCAATTGCTCTA+AGG | 0.366113 | 1.3:-54599915 | None:intergenic |
| GTTGCTTCTACCTTGGAAAT+GGG | 0.372170 | 1.3:+54600161 | MS.gene85562:CDS |
| CACCACCTTGAAACTCTTCC+TGG | 0.373919 | 1.3:-54598516 | None:intergenic |
| TCCAATAATTGATATAGATA+TGG | 0.381151 | 1.3:+54601412 | MS.gene85562:CDS |
| TGCAGGAATGAGAGAACTTT+GGG | 0.399544 | 1.3:+54600080 | MS.gene85562:CDS |
| TCTATATCAATTATTGGATT+CGG | 0.400812 | 1.3:-54601407 | None:intergenic |
| CTTAGTGTGCTCAGAGCATC+AGG | 0.402882 | 1.3:+54601362 | MS.gene85562:CDS |
| GTTGTGTTTAACCATCTCTA+TGG | 0.405567 | 1.3:+54598666 | MS.gene85562:CDS |
| TTATCCCCGTATCTCCATTT+CGG | 0.407052 | 1.3:+54599793 | MS.gene85562:CDS |
| TGGTCTCGAACCAGTGAAAC+AGG | 0.407880 | 1.3:-54599114 | None:intergenic |
| CGTCCTAGTAACGCGTTGCT+TGG | 0.415085 | 1.3:-54599655 | None:intergenic |
| CGCTCAAGCTCGTGACCGTC+TGG | 0.421155 | 1.3:-54600267 | None:intergenic |
| AAACCAAGCAACGCGTTACT+AGG | 0.421602 | 1.3:+54599652 | MS.gene85562:CDS |
| ACAGACATGGAGCAAAGCTC+AGG | 0.431235 | 1.3:+54601869 | MS.gene85562:CDS |
| CAAGGAGGAATAAGCGAAAC+AGG | 0.434780 | 1.3:-54599291 | None:intergenic |
| TTTATCAGATCCTGTTTCAC+TGG | 0.435781 | 1.3:+54599104 | MS.gene85562:intron |
| GTAGCAATAGAACCATTGTT+TGG | 0.440981 | 1.3:+54598382 | MS.gene85562:CDS |
| CAGCACTAGCTGCTGCTGCT+AGG | 0.442114 | 1.3:+54598436 | MS.gene85562:CDS |
| ATGCAGGAATGAGAGAACTT+TGG | 0.446720 | 1.3:+54600079 | MS.gene85562:CDS |
| CTGTTTCGCTTATTCCTCCT+TGG | 0.448512 | 1.3:+54599292 | MS.gene85562:CDS |
| TCTTGAATATGGCTTGAGTC+AGG | 0.448589 | 1.3:-54601445 | None:intergenic |
| CTAGCAGCAGCAGCTAGTGC+TGG | 0.448793 | 1.3:-54598435 | None:intergenic |
| TGAAAATGTTGCTTCTACCT+TGG | 0.450718 | 1.3:+54600154 | MS.gene85562:CDS |
| TCGAAACTATTACTCTGATT+CGG | 0.452944 | 1.3:-54600122 | None:intergenic |
| TCTCGAACCAAGTGATTTCA+AGG | 0.453164 | 1.3:-54598571 | None:intergenic |
| TCACACTCAACTCTCCGAAA+TGG | 0.453446 | 1.3:-54599807 | None:intergenic |
| ACTATCTTTCACATGATTCA+CGG | 0.453888 | 1.3:-54601702 | None:intergenic |
| GGCTACCCTTTGGTTGATGC+AGG | 0.455490 | 1.3:+54600063 | MS.gene85562:CDS |
| TTCTTAGGATCCTGAAATGC+TGG | 0.457403 | 1.3:-54601617 | None:intergenic |
| CTGAGTGGATCCATCATCCT+TGG | 0.471071 | 1.3:+54601330 | MS.gene85562:CDS |
| AGCACTAGCTGCTGCTGCTA+GGG | 0.473785 | 1.3:+54598437 | MS.gene85562:CDS |
| GAGATGCTTGCACAAGCAAA+TGG | 0.474718 | 1.3:+54599266 | MS.gene85562:CDS |
| CGGTCACGAGCTTGAGCGCT+TGG | 0.474915 | 1.3:+54600272 | MS.gene85562:CDS |
| TAGAAGGGACCTTAGAATTG+AGG | 0.477865 | 1.3:+54598407 | MS.gene85562:CDS |
| AACTCTCCGAAATGGAGATA+CGG | 0.477912 | 1.3:-54599799 | None:intergenic |
| CTCGGCTGGCAGTATATCTC+AGG | 0.480304 | 1.3:+54600237 | MS.gene85562:CDS |
| CTAGCTGCTGCTGCTAGGGA+TGG | 0.482748 | 1.3:+54598441 | MS.gene85562:CDS |
| AAAGAAAAGCTAGTGGAACT+TGG | 0.484127 | 1.3:+54599144 | MS.gene85562:CDS |
| ATCCGTCTAACTTTAAGACT+TGG | 0.485219 | 1.3:+54600025 | MS.gene85562:CDS |
| ATGAGAGAACTTTGGGCTAC+CGG | 0.485396 | 1.3:+54600087 | MS.gene85562:CDS |
| CTAGGACGAGCATGGTCTCC+AGG | 0.489522 | 1.3:+54599670 | MS.gene85562:CDS |
| ACTCTCCGAAATGGAGATAC+GGG | 0.489556 | 1.3:-54599798 | None:intergenic |
| ATCCAGAAGGAGAATATGTA+AGG | 0.496224 | 1.3:+54601276 | MS.gene85562:CDS |
| GATCAGTCCTTGAAATCACT+TGG | 0.496518 | 1.3:+54598564 | MS.gene85562:CDS |
| ATGTCTGTCTGTTCTTGCCA+TGG | 0.496950 | 1.3:-54601854 | None:intergenic |
| GAGTACTCTCAATGCTCTCT+TGG | 0.499541 | 1.3:+54598614 | MS.gene85562:CDS |
| GGATCTGTTGTATGAGCCTT+GGG | 0.500509 | 1.3:+54599191 | MS.gene85562:CDS |
| TTTATCCAGGAAGAGTTTCA+AGG | 0.505143 | 1.3:+54598511 | MS.gene85562:CDS |
| TTGTCAGCATTGCTCCAACC+TGG | 0.505947 | 1.3:-54599688 | None:intergenic |
| TACTTCACTACTCCAAGAAT+AGG | 0.509107 | 1.3:+54599740 | MS.gene85562:CDS |
| AACCATTGTTTGGTTTAGAA+GGG | 0.509245 | 1.3:+54598392 | MS.gene85562:CDS |
| AGGTAGGACTGGCTACCCTT+TGG | 0.509419 | 1.3:+54600053 | MS.gene85562:CDS |
| CTACTCCAAGAATAGGCAAA+AGG | 0.511893 | 1.3:+54599747 | MS.gene85562:CDS |
| CTCATTCCTGCATCAACCAA+AGG | 0.513446 | 1.3:-54600069 | None:intergenic |
| AGCCGAGGATATCACATTCA+AGG | 0.517876 | 1.3:-54600221 | None:intergenic |
| TGAAGAGAAGAGAAAGAACA+TGG | 0.517976 | 1.3:+54601673 | MS.gene85562:CDS |
| AGCTTCTGGCTCTGAAGCAA+GGG | 0.519234 | 1.3:+54601493 | MS.gene85562:CDS |
| AGTCGAGAAATGTTCAATAG+AGG | 0.522169 | 1.3:+54599603 | MS.gene85562:CDS |
| ATGGGGAATGAAGTATTTCT+GGG | 0.522424 | 1.3:+54600179 | MS.gene85562:CDS |
| GAAGCAGTCTTTAGTTCACT+TGG | 0.523042 | 1.3:+54598542 | MS.gene85562:CDS |
| AAGCTTCTGGCTCTGAAGCA+AGG | 0.524562 | 1.3:+54601492 | MS.gene85562:CDS |
| CTCCAAGTCTTAAAGTTAGA+CGG | 0.525857 | 1.3:-54600027 | None:intergenic |
| GTTGGCATTCTTGCCAACTC+AGG | 0.527793 | 1.3:-54601308 | None:intergenic |
| CAGGAAGAGTTTCAAGGTGG+TGG | 0.530377 | 1.3:+54598517 | MS.gene85562:CDS |
| GAGCAAAGCTCAGGGAAAGA+TGG | 0.532049 | 1.3:+54601878 | MS.gene85562:CDS |
| TTGTGGAACAGAAAATGAAT+AGG | 0.538477 | 1.3:-54601801 | None:intergenic |
| GGGATCTGTTGTATGAGCCT+TGG | 0.542320 | 1.3:+54599190 | MS.gene85562:CDS |
| CTCAAGCCATATTCAAGATG+TGG | 0.544153 | 1.3:+54601450 | MS.gene85562:CDS |
| AAGAATAGGCAAAAGGTTGG+TGG | 0.546393 | 1.3:+54599754 | MS.gene85562:CDS |
| GACGAGCATGGTCTCCAGGT+TGG | 0.548035 | 1.3:+54599674 | MS.gene85562:CDS |
| GTGGTGCATTCCAAGGATGA+TGG | 0.551180 | 1.3:-54601340 | None:intergenic |
| AAGGCAATGGCTACCTGAGT+TGG | 0.551193 | 1.3:+54601295 | MS.gene85562:CDS |
| TTGAATGTGATATCCTCGGC+TGG | 0.555532 | 1.3:+54600223 | MS.gene85562:CDS |
| AGGTTGGAGCAATGCTGACA+AGG | 0.556873 | 1.3:+54599690 | MS.gene85562:CDS |
| TCATTCCTGCATCAACCAAA+GGG | 0.558184 | 1.3:-54600068 | None:intergenic |
| CTTCAAATCTAAAATGGCCA+TGG | 0.558284 | 1.3:+54601837 | MS.gene85562:CDS |
| TTGGGAAGTATATGATGAGA+AGG | 0.559387 | 1.3:+54599209 | MS.gene85562:CDS |
| TACTTCATTCCCCATTTCCA+AGG | 0.559892 | 1.3:-54600171 | None:intergenic |
| AGAGCATCAGGAGTCGAGCT+AGG | 0.561014 | 1.3:+54601374 | MS.gene85562:CDS |
| TTCTCATCATATACTTCCCA+AGG | 0.561654 | 1.3:-54599207 | None:intergenic |
| TGAGCGCTTGGATGATCCTG+AGG | 0.562126 | 1.3:+54600284 | MS.gene85562:CDS |
| GGATCTAGGTTTGATCCAGA+AGG | 0.564228 | 1.3:+54601263 | MS.gene85562:CDS |
| ACTTGGAGACAAGGTAGGAC+TGG | 0.564903 | 1.3:+54600042 | MS.gene85562:CDS |
| GATTCGGTTATGCATCCATC+CGG | 0.565330 | 1.3:-54600106 | None:intergenic |
| GTTTATATGGTGTCCTAAAG+AGG | 0.569764 | 1.3:+54598479 | MS.gene85562:CDS |
| TGGCAATTAGTTCCTGCTGA+AGG | 0.570502 | 1.3:+54599312 | MS.gene85562:CDS |
| ACACTAAGTGGTGCATTCCA+AGG | 0.571610 | 1.3:-54601347 | None:intergenic |
| TTGCTTCTACCTTGGAAATG+GGG | 0.574156 | 1.3:+54600162 | MS.gene85562:CDS |
| TTAAGACTTGGAGACAAGGT+AGG | 0.577247 | 1.3:+54600037 | MS.gene85562:CDS |
| GACCTTGAATGTGATATCCT+CGG | 0.577392 | 1.3:+54600219 | MS.gene85562:CDS |
| TCAAGCCATATTCAAGATGT+GGG | 0.581508 | 1.3:+54601451 | MS.gene85562:CDS |
| TTAATGTGCATACCTTCAGC+AGG | 0.581862 | 1.3:-54599324 | None:intergenic |
| GAAGATGAGGAACATTGTTG+TGG | 0.582759 | 1.3:-54601818 | None:intergenic |
| TCGCATAAAGCAGATTCTGT+GGG | 0.584208 | 1.3:+54599849 | MS.gene85562:CDS |
| AAGGAGAATATGTAAGGCAA+TGG | 0.584996 | 1.3:+54601282 | MS.gene85562:CDS |
| GGATGATGGATCCACTCAGT+TGG | 0.589489 | 1.3:-54601326 | None:intergenic |
| AACTTTAAGACTTGGAGACA+AGG | 0.589920 | 1.3:+54600033 | MS.gene85562:CDS |
| TCCAAGAATAGGCAAAAGGT+TGG | 0.591255 | 1.3:+54599751 | MS.gene85562:CDS |
| AGTGCTCTCTCATGAGTGAA+CGG | 0.592898 | 1.3:-54599967 | None:intergenic |
| CTCGCATAAAGCAGATTCTG+TGG | 0.596769 | 1.3:+54599848 | MS.gene85562:CDS |
| CAGATTCTGTGGGGAAACGA+AGG | 0.599320 | 1.3:+54599859 | MS.gene85562:CDS |
| CTGAGATATACTGCCAGCCG+AGG | 0.601742 | 1.3:-54600236 | None:intergenic |
| GAGAACTTTGGGCTACCGGA+TGG | 0.607433 | 1.3:+54600091 | MS.gene85562:CDS |
| TTTCATGCAGGGGCGACAGG+AGG | 0.611889 | 1.3:+54602204 | MS.gene85562:intron |
| ATATGGTGTCCTAAAGAGGA+AGG | 0.616143 | 1.3:+54598483 | MS.gene85562:CDS |
| TTAGGACACCATATAAACAC+AGG | 0.616586 | 1.3:-54598474 | None:intergenic |
| CAGACATGGAGCAAAGCTCA+GGG | 0.619340 | 1.3:+54601870 | MS.gene85562:CDS |
| ATCTGTGAAAAGCTATAATG+GGG | 0.625611 | 1.3:+54599170 | MS.gene85562:CDS |
| AGCACTACTTACCATAGAGA+TGG | 0.626546 | 1.3:-54598677 | None:intergenic |
| CAACATCAAAGAAAAGCTAG+TGG | 0.627181 | 1.3:+54599137 | MS.gene85562:CDS |
| ATCTCAGGATGCTTACCAGA+CGG | 0.628095 | 1.3:+54600252 | MS.gene85562:CDS |
| GGAAACGAAGGCAACCGTGT+TGG | 0.628419 | 1.3:+54599871 | MS.gene85562:CDS |
| TTAGACGGATCAGCATTCCA+AGG | 0.632771 | 1.3:-54600012 | None:intergenic |
| GTCCCTTCTAAACCAAACAA+TGG | 0.637331 | 1.3:-54598394 | None:intergenic |
| ACGCGTTACTAGGACGAGCA+TGG | 0.642349 | 1.3:+54599662 | MS.gene85562:CDS |
| TCAGCAGGAACTAATTGCCA+AGG | 0.643115 | 1.3:-54599309 | None:intergenic |
| TTAGCTGAAATAGTAGCAGA+CGG | 0.651586 | 1.3:-54601581 | None:intergenic |
| TGGGAAGTATATGATGAGAA+GGG | 0.652926 | 1.3:+54599210 | MS.gene85562:CDS |
| GATGCTCTGAGCACACTAAG+TGG | 0.654212 | 1.3:-54601359 | None:intergenic |
| CGCATAAAGCAGATTCTGTG+GGG | 0.655631 | 1.3:+54599850 | MS.gene85562:CDS |
| TGGCAAGAATGCCAACTGAG+TGG | 0.660213 | 1.3:+54601315 | MS.gene85562:CDS |
| TAGACGGATCAGCATTCCAA+GGG | 0.660245 | 1.3:-54600011 | None:intergenic |
| ATTTCGGAGAGTTGAGTGTG+AGG | 0.666895 | 1.3:+54599809 | MS.gene85562:CDS |
| ATGGCAAGAACAGACAGACA+TGG | 0.671080 | 1.3:+54601856 | MS.gene85562:CDS |
| GCAGGAACTAATTGCCAAGG+AGG | 0.679452 | 1.3:-54599306 | None:intergenic |
| CTCTCCGAAATGGAGATACG+GGG | 0.691586 | 1.3:-54599797 | None:intergenic |
| ATCCAGGAAGAGTTTCAAGG+TGG | 0.698355 | 1.3:+54598514 | MS.gene85562:CDS |
| TTACACTTTCTTCTCCAACA+CGG | 0.700857 | 1.3:-54599885 | None:intergenic |
| ATACGGGGATAACAGCGAGG+TGG | 0.704873 | 1.3:-54599782 | None:intergenic |
| TAGGACACCATATAAACACA+GGG | 0.720737 | 1.3:-54598473 | None:intergenic |
| GAGATACGGGGATAACAGCG+AGG | 0.744456 | 1.3:-54599785 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTCAATTAATATAGTTTT+TGG | + | chr1.3:54599361-54599380 | MS.gene85562:intron | 10.0% |
| !! | TGAATAAATTATTGAATACA+GGG | - | chr1.3:54600362-54600381 | None:intergenic | 15.0% |
| !! | TTGAATAAATTATTGAATAC+AGG | - | chr1.3:54600363-54600382 | None:intergenic | 15.0% |
| !! | AAATGTTAGTAAGTTAGTAT+TGG | - | chr1.3:54599459-54599478 | None:intergenic | 20.0% |
| !! | GCTTATAACATAAATGAAAA+TGG | - | chr1.3:54600941-54600960 | None:intergenic | 20.0% |
| !! | TAAAATTTCAAAGTACAAAC+TGG | - | chr1.3:54600665-54600684 | None:intergenic | 20.0% |
| !! | TCCAATAATTGATATAGATA+TGG | + | chr1.3:54601412-54601431 | MS.gene85562:CDS | 20.0% |
| !! | TCTATATCAATTATTGGATT+CGG | - | chr1.3:54601410-54601429 | None:intergenic | 20.0% |
| !!! | AAAAGATGATACTTTCATTT+TGG | - | chr1.3:54599488-54599507 | None:intergenic | 20.0% |
| !!! | ATCCTTAGGTTTATTTTTTT+AGG | + | chr1.3:54602021-54602040 | MS.gene85562:intron | 20.0% |
| !!! | TAGATAATAGCTTTTATATC+TGG | + | chr1.3:54600538-54600557 | MS.gene85562:intron | 20.0% |
| !!! | TATAGGAAACAAGTTTTATT+AGG | + | chr1.3:54601139-54601158 | MS.gene85562:intron | 20.0% |
| !!! | TCCTTAGGTTTATTTTTTTA+GGG | + | chr1.3:54602022-54602041 | MS.gene85562:intron | 20.0% |
| !!! | TTTGGTTACACTTAATATTT+TGG | + | chr1.3:54598776-54598795 | MS.gene85562:intron | 20.0% |
| !!! | TTTTTCTATTAGTAACATAG+AGG | + | chr1.3:54598828-54598847 | MS.gene85562:intron | 20.0% |
| ! | AAATGTTCAATAGAGGATTT+AGG | + | chr1.3:54599610-54599629 | MS.gene85562:CDS | 25.0% |
| ! | ATAAATTATTGAATACAGGG+TGG | - | chr1.3:54600359-54600378 | None:intergenic | 25.0% |
| ! | ATGTTACTAATAGAAAAAGC+CGG | - | chr1.3:54598826-54598845 | None:intergenic | 25.0% |
| ! | ATTTACTCTTGTTAATTGTG+AGG | - | chr1.3:54601198-54601217 | None:intergenic | 25.0% |
| ! | CAAATTAGATATTTAACGAG+CGG | - | chr1.3:54600593-54600612 | None:intergenic | 25.0% |
| ! | GCCATATCTATATCAATTAT+TGG | - | chr1.3:54601416-54601435 | None:intergenic | 25.0% |
| ! | TATCTGTGAAAAGCTATAAT+GGG | + | chr1.3:54599169-54599188 | MS.gene85562:CDS | 25.0% |
| ! | TCCCTAAAAAAATAAACCTA+AGG | - | chr1.3:54602026-54602045 | None:intergenic | 25.0% |
| ! | TGATTAAGCGTTTATTCTAT+AGG | - | chr1.3:54600864-54600883 | None:intergenic | 25.0% |
| ! | TTATCTGTGAAAAGCTATAA+TGG | + | chr1.3:54599168-54599187 | MS.gene85562:CDS | 25.0% |
| !! | AAGAATTTTCATTTTCATGC+AGG | + | chr1.3:54602192-54602211 | MS.gene85562:intron | 25.0% |
| !! | AATAAACAGATATCAGCTTT+TGG | + | chr1.3:54600994-54601013 | MS.gene85562:intron | 25.0% |
| !! | AGAATTTTCATTTTCATGCA+GGG | + | chr1.3:54602193-54602212 | MS.gene85562:intron | 25.0% |
| !! | ATGATACTTTCATTTTGGAT+AGG | - | chr1.3:54599483-54599502 | None:intergenic | 25.0% |
| !! | TCATTATTTGTCCAGATTTT+AGG | + | chr1.3:54601242-54601261 | MS.gene85562:intron | 25.0% |
| !!! | GATTTGATTTGATTCATGTT+TGG | + | chr1.3:54598758-54598777 | MS.gene85562:intron | 25.0% |
| !!! | GGTATTACTTTTTCGTATAT+AGG | + | chr1.3:54601122-54601141 | MS.gene85562:intron | 25.0% |
| !!! | TAAGTTGGTTTATTCAAACA+GGG | - | chr1.3:54600833-54600852 | None:intergenic | 25.0% |
| !!! | TTGCTTTTAACACAGATTAT+TGG | + | chr1.3:54600610-54600629 | MS.gene85562:intron | 25.0% |
| AAACTATCTTGGAGATCTTA+TGG | + | chr1.3:54600970-54600989 | MS.gene85562:intron | 30.0% | |
| ACAATCATGGTACAAAATGT+TGG | - | chr1.3:54599084-54599103 | None:intergenic | 30.0% | |
| ACCAAATTTATGCAGTTGAT+TGG | - | chr1.3:54600504-54600523 | None:intergenic | 30.0% | |
| ACCTAAGGATTAAATTGTCT+CGG | - | chr1.3:54602011-54602030 | None:intergenic | 30.0% | |
| ACTATCTTTCACATGATTCA+CGG | - | chr1.3:54601705-54601724 | None:intergenic | 30.0% | |
| AGAAGAGAATTTGATCACAT+TGG | - | chr1.3:54599565-54599584 | None:intergenic | 30.0% | |
| AGGATCTGATAAAACAATCA+TGG | - | chr1.3:54599097-54599116 | None:intergenic | 30.0% | |
| ATCACTGTGTTTCATAATGA+GGG | + | chr1.3:54602116-54602135 | MS.gene85562:intron | 30.0% | |
| ATCTGTGAAAAGCTATAATG+GGG | + | chr1.3:54599170-54599189 | MS.gene85562:CDS | 30.0% | |
| CAACTATTATAGTCATGCTA+AGG | - | chr1.3:54600773-54600792 | None:intergenic | 30.0% | |
| CCTCATCTTCAAATCTAAAA+TGG | + | chr1.3:54601831-54601850 | MS.gene85562:CDS | 30.0% | |
| CTAAGAATGAACTACCTATT+AGG | + | chr1.3:54601633-54601652 | MS.gene85562:CDS | 30.0% | |
| CTAATAGGTAGTTCATTCTT+AGG | - | chr1.3:54601635-54601654 | None:intergenic | 30.0% | |
| GAACTGTAAAGAAACATATC+AGG | - | chr1.3:54599045-54599064 | None:intergenic | 30.0% | |
| GAGTATCATCGATAGTTATT+CGG | + | chr1.3:54599513-54599532 | MS.gene85562:intron | 30.0% | |
| GTAAAATGCTGGATTCTTAT+TGG | + | chr1.3:54598921-54598940 | MS.gene85562:intron | 30.0% | |
| TAAAATTGTCCTTCCTCTTT+AGG | - | chr1.3:54598495-54598514 | None:intergenic | 30.0% | |
| TCCAATCAACTGCATAAATT+TGG | + | chr1.3:54600500-54600519 | MS.gene85562:intron | 30.0% | |
| TCGAAACTATTACTCTGATT+CGG | - | chr1.3:54600125-54600144 | None:intergenic | 30.0% | |
| TTGTGGAACAGAAAATGAAT+AGG | - | chr1.3:54601804-54601823 | None:intergenic | 30.0% | |
| ! | AAAGAGTGAAGACTCATTTT+AGG | - | chr1.3:54602076-54602095 | None:intergenic | 30.0% |
| ! | AACCATTGTTTGGTTTAGAA+GGG | + | chr1.3:54598392-54598411 | MS.gene85562:CDS | 30.0% |
| ! | AAGAGTGAAGACTCATTTTA+GGG | - | chr1.3:54601929-54601910 | None:intergenic | 30.0% |
| ! | CAAGGCTTTAACAGAATTTA+TGG | + | chr1.3:54599708-54599727 | MS.gene85562:CDS | 30.0% |
| ! | CATTTTGTTCTCTTCCTAAT+AGG | - | chr1.3:54601650-54601669 | None:intergenic | 30.0% |
| ! | CCATTTTAGATTTGAAGATG+AGG | - | chr1.3:54601834-54601853 | None:intergenic | 30.0% |
| ! | GAATTTTCATTTTCATGCAG+GGG | + | chr1.3:54602194-54602213 | MS.gene85562:intron | 30.0% |
| ! | GTTAATTGTGAGGATCTTTT+TGG | - | chr1.3:54601188-54601207 | None:intergenic | 30.0% |
| !! | AGTAAGTTAGTATTGGTGTT+AGG | - | chr1.3:54599452-54599471 | None:intergenic | 30.0% |
| !! | AGTTACTTCTATTTTTCTCG+TGG | - | chr1.3:54601966-54601985 | None:intergenic | 30.0% |
| !! | GTAAGTTGGTTTATTCAAAC+AGG | - | chr1.3:54600834-54600853 | None:intergenic | 30.0% |
| !! | GTTTTATTAGGCTTGTTTGT+TGG | + | chr1.3:54601151-54601170 | MS.gene85562:intron | 30.0% |
| !! | TGTGAGGAAAGTTTTTCAAA+TGG | + | chr1.3:54599825-54599844 | MS.gene85562:CDS | 30.0% |
| !!! | CACTCTTTTTTACACTTTGT+TGG | + | chr1.3:54602149-54602168 | MS.gene85562:intron | 30.0% |
| !!! | GCTTTTTTCGTAAACTATCT+TGG | + | chr1.3:54600959-54600978 | MS.gene85562:intron | 30.0% |
| !!! | TATAGTTTTTGGTTCCACAT+TGG | + | chr1.3:54599372-54599391 | MS.gene85562:intron | 30.0% |
| AAAAATTGGCACATGAGGAT+GGG | - | chr1.3:54600461-54600480 | None:intergenic | 35.0% | |
| AAAGAAAAGCTAGTGGAACT+TGG | + | chr1.3:54599144-54599163 | MS.gene85562:CDS | 35.0% | |
| AAGCACTTGTGAGATTGTTT+GGG | - | chr1.3:54601049-54601068 | None:intergenic | 35.0% | |
| AAGGAGAATATGTAAGGCAA+TGG | + | chr1.3:54601282-54601301 | MS.gene85562:CDS | 35.0% | |
| AAGTAATACCGATCTCACTT+AGG | - | chr1.3:54601112-54601131 | None:intergenic | 35.0% | |
| ACCGAGACAATTTAATCCTT+AGG | + | chr1.3:54602007-54602026 | MS.gene85562:intron | 35.0% | |
| AGATTGTTTGGGAGAGATTT+CGG | - | chr1.3:54601038-54601057 | None:intergenic | 35.0% | |
| AGTAATACCGATCTCACTTA+GGG | - | chr1.3:54601111-54601130 | None:intergenic | 35.0% | |
| AGTCGAGAAATGTTCAATAG+AGG | + | chr1.3:54599603-54599622 | MS.gene85562:CDS | 35.0% | |
| AGTTATGTGTGGCAAAATGA+AGG | - | chr1.3:54598901-54598920 | None:intergenic | 35.0% | |
| ATCCAGAAGGAGAATATGTA+AGG | + | chr1.3:54601276-54601295 | MS.gene85562:CDS | 35.0% | |
| ATCTCAAAAATTGGCACATG+AGG | - | chr1.3:54600466-54600485 | None:intergenic | 35.0% | |
| CAAAAGTTGAAGAATCAAGC+CGG | + | chr1.3:54598804-54598823 | MS.gene85562:intron | 35.0% | |
| CAAACCTAGATCCTAAAATC+TGG | - | chr1.3:54601256-54601275 | None:intergenic | 35.0% | |
| CAACATCAAAGAAAAGCTAG+TGG | + | chr1.3:54599137-54599156 | MS.gene85562:CDS | 35.0% | |
| CACACATAACTGTAAAATGC+TGG | + | chr1.3:54598910-54598929 | MS.gene85562:intron | 35.0% | |
| CACCAAAATTAGAGAAGTCA+CGG | - | chr1.3:54601222-54601241 | None:intergenic | 35.0% | |
| CATCACTGTGTTTCATAATG+AGG | + | chr1.3:54602115-54602134 | MS.gene85562:intron | 35.0% | |
| CATTTCCCACATCTTGAATA+TGG | - | chr1.3:54601459-54601478 | None:intergenic | 35.0% | |
| CTATAGGAGCTTAAGTAAGT+TGG | - | chr1.3:54600848-54600867 | None:intergenic | 35.0% | |
| CTCCAAGTCTTAAAGTTAGA+CGG | - | chr1.3:54600030-54600049 | None:intergenic | 35.0% | |
| CTGTATTCCCTGTGTTTATA+TGG | + | chr1.3:54598466-54598485 | MS.gene85562:CDS | 35.0% | |
| GCGGTGAAGTTTAATATGAA+AGG | - | chr1.3:54600574-54600593 | None:intergenic | 35.0% | |
| GTAGCAATAGAACCATTGTT+TGG | + | chr1.3:54598382-54598401 | MS.gene85562:CDS | 35.0% | |
| GTTATGTGTGGCAAAATGAA+GGG | - | chr1.3:54598900-54598919 | None:intergenic | 35.0% | |
| GTTGTGTTTAACCATCTCTA+TGG | + | chr1.3:54598666-54598685 | MS.gene85562:CDS | 35.0% | |
| GTTTATATGGTGTCCTAAAG+AGG | + | chr1.3:54598479-54598498 | MS.gene85562:CDS | 35.0% | |
| TAAGCACTTGTGAGATTGTT+TGG | - | chr1.3:54601050-54601069 | None:intergenic | 35.0% | |
| TACTTCACTACTCCAAGAAT+AGG | + | chr1.3:54599740-54599759 | MS.gene85562:CDS | 35.0% | |
| TAGGACACCATATAAACACA+GGG | - | chr1.3:54598476-54598495 | None:intergenic | 35.0% | |
| TCAAGCCATATTCAAGATGT+GGG | + | chr1.3:54601451-54601470 | MS.gene85562:CDS | 35.0% | |
| TCTTCACTCTTTACCATCAT+AGG | + | chr1.3:54602084-54602103 | MS.gene85562:intron | 35.0% | |
| TGAAGAGAAGAGAAAGAACA+TGG | + | chr1.3:54601673-54601692 | MS.gene85562:CDS | 35.0% | |
| TGATGTAGAAAGTCCTATGA+TGG | - | chr1.3:54602100-54602119 | None:intergenic | 35.0% | |
| TTACACTTTCTTCTCCAACA+CGG | - | chr1.3:54599888-54599907 | None:intergenic | 35.0% | |
| TTAGCTGAAATAGTAGCAGA+CGG | - | chr1.3:54601584-54601603 | None:intergenic | 35.0% | |
| TTAGGACACCATATAAACAC+AGG | - | chr1.3:54598477-54598496 | None:intergenic | 35.0% | |
| TTCTCATCATATACTTCCCA+AGG | - | chr1.3:54599210-54599229 | None:intergenic | 35.0% | |
| TTTATCAGATCCTGTTTCAC+TGG | + | chr1.3:54599104-54599123 | MS.gene85562:intron | 35.0% | |
| TTTATCCAGGAAGAGTTTCA+AGG | + | chr1.3:54598511-54598530 | MS.gene85562:CDS | 35.0% | |
| ! | AATGGGGAATGAAGTATTTC+TGG | + | chr1.3:54600178-54600197 | MS.gene85562:CDS | 35.0% |
| ! | ACAAAGAAGTTTTACGACAG+AGG | + | chr1.3:54599420-54599439 | MS.gene85562:intron | 35.0% |
| ! | ACTCTTTTCCTTAGAGCAAT+TGG | + | chr1.3:54599907-54599926 | MS.gene85562:CDS | 35.0% |
| ! | ATGGGGAATGAAGTATTTCT+GGG | + | chr1.3:54600179-54600198 | MS.gene85562:CDS | 35.0% |
| ! | CAGCATTTTACAGTTATGTG+TGG | - | chr1.3:54598912-54598931 | None:intergenic | 35.0% |
| ! | CTTCAAATCTAAAATGGCCA+TGG | + | chr1.3:54601837-54601856 | MS.gene85562:CDS | 35.0% |
| ! | GAACCATTGTTTGGTTTAGA+AGG | + | chr1.3:54598391-54598410 | MS.gene85562:CDS | 35.0% |
| ! | TACCGTGACTTCTCTAATTT+TGG | + | chr1.3:54601217-54601236 | MS.gene85562:intron | 35.0% |
| ! | TGAAAATGTTGCTTCTACCT+TGG | + | chr1.3:54600154-54600173 | MS.gene85562:CDS | 35.0% |
| ! | TGATCTACAGAGCTTTTGAA+AGG | - | chr1.3:54600736-54600755 | None:intergenic | 35.0% |
| ! | TGGGAAGTATATGATGAGAA+GGG | + | chr1.3:54599210-54599229 | MS.gene85562:CDS | 35.0% |
| ! | TTACAACCTTCGTTCCTTTT+TGG | + | chr1.3:54599241-54599260 | MS.gene85562:CDS | 35.0% |
| ! | TTGGGAAGTATATGATGAGA+AGG | + | chr1.3:54599209-54599228 | MS.gene85562:CDS | 35.0% |
| !! | AACTTTAAGACTTGGAGACA+AGG | + | chr1.3:54600033-54600052 | MS.gene85562:CDS | 35.0% |
| !! | ATCCGTCTAACTTTAAGACT+TGG | + | chr1.3:54600025-54600044 | MS.gene85562:CDS | 35.0% |
| !! | CTAGCTTTTCTTTGATGTTG+TGG | - | chr1.3:54599137-54599156 | None:intergenic | 35.0% |
| !! | GTCTCGGTTTATTTTCTTCA+TGG | - | chr1.3:54601995-54602014 | None:intergenic | 35.0% |
| !! | TGGTAAGTAGTGCTGTTTAT+AGG | + | chr1.3:54598686-54598705 | MS.gene85562:intron | 35.0% |
| !!! | ATGTGCCAATTTTTGAGATC+TGG | + | chr1.3:54600467-54600486 | MS.gene85562:intron | 35.0% |
| !!! | GAAGTTGCGTTATTTTTCTC+AGG | + | chr1.3:54602049-54602068 | MS.gene85562:intron | 35.0% |
| !!! | TGTGCCAATTTTTGAGATCT+GGG | + | chr1.3:54600468-54600487 | MS.gene85562:intron | 35.0% |
| !!! | TTGTCCAGATTTTAGGATCT+AGG | + | chr1.3:54601249-54601268 | MS.gene85562:intron | 35.0% |
| AAACAGTCCCTAAGTGAGAT+CGG | + | chr1.3:54601101-54601120 | MS.gene85562:intron | 40.0% | |
| AACTCTCCGAAATGGAGATA+CGG | - | chr1.3:54599802-54599821 | None:intergenic | 40.0% | |
| AAGAATAGGCAAAAGGTTGG+TGG | + | chr1.3:54599754-54599773 | MS.gene85562:CDS | 40.0% | |
| ACCACCCAGATCTCAAAAAT+TGG | - | chr1.3:54600475-54600494 | None:intergenic | 40.0% | |
| AGAAAAACGTGACAAACCTC+AGG | - | chr1.3:54600303-54600322 | None:intergenic | 40.0% | |
| AGCACTACTTACCATAGAGA+TGG | - | chr1.3:54598680-54598699 | None:intergenic | 40.0% | |
| ATATGGTGTCCTAAAGAGGA+AGG | + | chr1.3:54598483-54598502 | MS.gene85562:CDS | 40.0% | |
| ATGCAGGAATGAGAGAACTT+TGG | + | chr1.3:54600079-54600098 | MS.gene85562:CDS | 40.0% | |
| CAAAAATTGGCACATGAGGA+TGG | - | chr1.3:54600462-54600481 | None:intergenic | 40.0% | |
| CAGAATGTGATGTGTGATAC+AGG | - | chr1.3:54600391-54600410 | None:intergenic | 40.0% | |
| CTACTCCAAGAATAGGCAAA+AGG | + | chr1.3:54599747-54599766 | MS.gene85562:CDS | 40.0% | |
| CTCAAGCCATATTCAAGATG+TGG | + | chr1.3:54601450-54601469 | MS.gene85562:CDS | 40.0% | |
| CTCTTAGTCCAATTGCTCTA+AGG | - | chr1.3:54599918-54599937 | None:intergenic | 40.0% | |
| CTGGATTGTCCTCAATTCTA+AGG | - | chr1.3:54598419-54598438 | None:intergenic | 40.0% | |
| GAAGATGAGGAACATTGTTG+TGG | - | chr1.3:54601821-54601840 | None:intergenic | 40.0% | |
| GACCTTGAATGTGATATCCT+CGG | + | chr1.3:54600219-54600238 | MS.gene85562:CDS | 40.0% | |
| GATCAGTCCTTGAAATCACT+TGG | + | chr1.3:54598564-54598583 | MS.gene85562:CDS | 40.0% | |
| GCAAAATGAAGGGTTCTCAT+CGG | - | chr1.3:54598890-54598909 | None:intergenic | 40.0% | |
| GTCCCTTCTAAACCAAACAA+TGG | - | chr1.3:54598397-54598416 | None:intergenic | 40.0% | |
| GTTGCTTCTACCTTGGAAAT+GGG | + | chr1.3:54600161-54600180 | MS.gene85562:CDS | 40.0% | |
| TACTTCATTCCCCATTTCCA+AGG | - | chr1.3:54600174-54600193 | None:intergenic | 40.0% | |
| TAGAAGGGACCTTAGAATTG+AGG | + | chr1.3:54598407-54598426 | MS.gene85562:CDS | 40.0% | |
| TCATTCCTGCATCAACCAAA+GGG | - | chr1.3:54600071-54600090 | None:intergenic | 40.0% | |
| TCCAAAAGTTGTCCTCCTTA+AGG | + | chr1.3:54601550-54601569 | MS.gene85562:CDS | 40.0% | |
| TCCAAGAATAGGCAAAAGGT+TGG | + | chr1.3:54599751-54599770 | MS.gene85562:CDS | 40.0% | |
| TCCAGTAACGTTAAGCGAAA+GGG | - | chr1.3:54598986-54599005 | None:intergenic | 40.0% | |
| TCGCATAAAGCAGATTCTGT+GGG | + | chr1.3:54599849-54599868 | MS.gene85562:CDS | 40.0% | |
| TCTCGAACCAAGTGATTTCA+AGG | - | chr1.3:54598574-54598593 | None:intergenic | 40.0% | |
| TCTCTTCTGCTGTGTATTAC+AGG | + | chr1.3:54599577-54599596 | MS.gene85562:intron | 40.0% | |
| TCTTGAATATGGCTTGAGTC+AGG | - | chr1.3:54601448-54601467 | None:intergenic | 40.0% | |
| TGCAGGAATGAGAGAACTTT+GGG | + | chr1.3:54600080-54600099 | MS.gene85562:CDS | 40.0% | |
| TGCCTTACATATTCTCCTTC+TGG | - | chr1.3:54601281-54601300 | None:intergenic | 40.0% | |
| TTAAGACTTGGAGACAAGGT+AGG | + | chr1.3:54600037-54600056 | MS.gene85562:CDS | 40.0% | |
| TTAATGTGCATACCTTCAGC+AGG | - | chr1.3:54599327-54599346 | None:intergenic | 40.0% | |
| TTATCCCCGTATCTCCATTT+CGG | + | chr1.3:54599793-54599812 | MS.gene85562:CDS | 40.0% | |
| TTCCAGTAACGTTAAGCGAA+AGG | - | chr1.3:54598987-54599006 | None:intergenic | 40.0% | |
| TTCTTAGGATCCTGAAATGC+TGG | - | chr1.3:54601620-54601639 | None:intergenic | 40.0% | |
| TTGCTTCTACCTTGGAAATG+GGG | + | chr1.3:54600162-54600181 | MS.gene85562:CDS | 40.0% | |
| ! | ACCAACCTTTTGCCTATTCT+TGG | - | chr1.3:54599755-54599774 | None:intergenic | 40.0% |
| ! | AGAAGTTTTACGACAGAGGT+CGG | + | chr1.3:54599424-54599443 | MS.gene85562:intron | 40.0% |
| ! | CGGCTTGATTCTTCAACTTT+TGG | - | chr1.3:54598806-54598825 | None:intergenic | 40.0% |
| ! | GAAGCAGTCTTTAGTTCACT+TGG | + | chr1.3:54598542-54598561 | MS.gene85562:CDS | 40.0% |
| ! | GAGGAAGGACAATTTTATCC+AGG | + | chr1.3:54598498-54598517 | MS.gene85562:CDS | 40.0% |
| ! | TCCTTAAGGAGGACAACTTT+TGG | - | chr1.3:54601554-54601573 | None:intergenic | 40.0% |
| ! | TGTTGCTTCTACCTTGGAAA+TGG | + | chr1.3:54600160-54600179 | MS.gene85562:CDS | 40.0% |
| !! | AGAGTGTCACAGTTTTTCTC+AGG | - | chr1.3:54601936-54601955 | None:intergenic | 40.0% |
| !! | TTCCACATTGGTAGCTTTGT+TGG | + | chr1.3:54599384-54599403 | MS.gene85562:intron | 40.0% |
| !!! | GACACTTGAGTTTTTTCCCT+TGG | + | chr1.3:54599995-54600014 | MS.gene85562:CDS | 40.0% |
| AAACCAAGCAACGCGTTACT+AGG | + | chr1.3:54599652-54599671 | MS.gene85562:CDS | 45.0% | |
| ACACTAAGTGGTGCATTCCA+AGG | - | chr1.3:54601350-54601369 | None:intergenic | 45.0% | |
| ACTCTCCGAAATGGAGATAC+GGG | - | chr1.3:54599801-54599820 | None:intergenic | 45.0% | |
| AGCCGAGGATATCACATTCA+AGG | - | chr1.3:54600224-54600243 | None:intergenic | 45.0% | |
| AGTGCTCTCTCATGAGTGAA+CGG | - | chr1.3:54599970-54599989 | None:intergenic | 45.0% | |
| ATCCAGGAAGAGTTTCAAGG+TGG | + | chr1.3:54598514-54598533 | MS.gene85562:CDS | 45.0% | |
| ATCTCAGGATGCTTACCAGA+CGG | + | chr1.3:54600252-54600271 | MS.gene85562:CDS | 45.0% | |
| ATGAGAGAACTTTGGGCTAC+CGG | + | chr1.3:54600087-54600106 | MS.gene85562:CDS | 45.0% | |
| ATGGCAAGAACAGACAGACA+TGG | + | chr1.3:54601856-54601875 | MS.gene85562:CDS | 45.0% | |
| ATGTCTGTCTGTTCTTGCCA+TGG | - | chr1.3:54601857-54601876 | None:intergenic | 45.0% | |
| ATTTCGGAGAGTTGAGTGTG+AGG | + | chr1.3:54599809-54599828 | MS.gene85562:CDS | 45.0% | |
| CAAGCAGCATCAAAAGCTTC+TGG | + | chr1.3:54601479-54601498 | MS.gene85562:CDS | 45.0% | |
| CAAGGAGGAATAAGCGAAAC+AGG | - | chr1.3:54599294-54599313 | None:intergenic | 45.0% | |
| CACCAACAAAGCTACCAATG+TGG | - | chr1.3:54599389-54599408 | None:intergenic | 45.0% | |
| CACTTAGGGACTGTTTGGAT+TGG | - | chr1.3:54601097-54601116 | None:intergenic | 45.0% | |
| CCAGTAACGTTAAGCGAAAG+GGG | - | chr1.3:54598985-54599004 | None:intergenic | 45.0% | |
| CGCATAAAGCAGATTCTGTG+GGG | + | chr1.3:54599850-54599869 | MS.gene85562:CDS | 45.0% | |
| CTCATTCCTGCATCAACCAA+AGG | - | chr1.3:54600072-54600091 | None:intergenic | 45.0% | |
| CTCGCATAAAGCAGATTCTG+TGG | + | chr1.3:54599848-54599867 | MS.gene85562:CDS | 45.0% | |
| CTGTAGAGCAAGTGTCTTCA+TGG | - | chr1.3:54601745-54601764 | None:intergenic | 45.0% | |
| CTGTTTCGCTTATTCCTCCT+TGG | + | chr1.3:54599292-54599311 | MS.gene85562:CDS | 45.0% | |
| GAGATGCTTGCACAAGCAAA+TGG | + | chr1.3:54599266-54599285 | MS.gene85562:CDS | 45.0% | |
| GAGTACTCTCAATGCTCTCT+TGG | + | chr1.3:54598614-54598633 | MS.gene85562:CDS | 45.0% | |
| GATCTCACTTAGGGACTGTT+TGG | - | chr1.3:54601102-54601121 | None:intergenic | 45.0% | |
| GGATCTAGGTTTGATCCAGA+AGG | + | chr1.3:54601263-54601282 | MS.gene85562:CDS | 45.0% | |
| GGATCTGTTGTATGAGCCTT+GGG | + | chr1.3:54599191-54599210 | MS.gene85562:CDS | 45.0% | |
| TAGACGGATCAGCATTCCAA+GGG | - | chr1.3:54600014-54600033 | None:intergenic | 45.0% | |
| TCACACTCAACTCTCCGAAA+TGG | - | chr1.3:54599810-54599829 | None:intergenic | 45.0% | |
| TCAGCAGGAACTAATTGCCA+AGG | - | chr1.3:54599312-54599331 | None:intergenic | 45.0% | |
| TCTCTGCCAAAAAGGAACGA+AGG | - | chr1.3:54599250-54599269 | None:intergenic | 45.0% | |
| TGCAAGCATCTCTGCCAAAA+AGG | - | chr1.3:54599258-54599277 | None:intergenic | 45.0% | |
| TGGCAATTAGTTCCTGCTGA+AGG | + | chr1.3:54599312-54599331 | MS.gene85562:CDS | 45.0% | |
| TTAGACGGATCAGCATTCCA+AGG | - | chr1.3:54600015-54600034 | None:intergenic | 45.0% | |
| TTGAATGTGATATCCTCGGC+TGG | + | chr1.3:54600223-54600242 | MS.gene85562:CDS | 45.0% | |
| ! | GATTCGGTTATGCATCCATC+CGG | - | chr1.3:54600109-54600128 | None:intergenic | 45.0% |
| !! | ACGGAGCTTTTTCCTTAAGG+AGG | - | chr1.3:54601565-54601584 | None:intergenic | 45.0% |
| !! | ACTCATGAGAGAGCACTTCT+TGG | + | chr1.3:54599973-54599992 | MS.gene85562:CDS | 45.0% |
| !! | CAGACGGAGCTTTTTCCTTA+AGG | - | chr1.3:54601568-54601587 | None:intergenic | 45.0% |
| !! | GTAGCTTTGTTGGTGAGCTA+AGG | + | chr1.3:54599394-54599413 | MS.gene85562:intron | 45.0% |
| !! | TCAGAAAGTGCCAGCATTTC+AGG | + | chr1.3:54601607-54601626 | MS.gene85562:CDS | 45.0% |
| !!! | GCCAATTTTTGAGATCTGGG+TGG | + | chr1.3:54600471-54600490 | MS.gene85562:intron | 45.0% |
| !!! | GTATTTCTGGGACACGCTTT+TGG | + | chr1.3:54600191-54600210 | MS.gene85562:CDS | 45.0% |
| AAGGCAATGGCTACCTGAGT+TGG | + | chr1.3:54601295-54601314 | MS.gene85562:CDS | 50.0% | |
| ACAGACATGGAGCAAAGCTC+AGG | + | chr1.3:54601869-54601888 | MS.gene85562:CDS | 50.0% | |
| ACTTGGAGACAAGGTAGGAC+TGG | + | chr1.3:54600042-54600061 | MS.gene85562:CDS | 50.0% | |
| AGGTTGGAGCAATGCTGACA+AGG | + | chr1.3:54599690-54599709 | MS.gene85562:CDS | 50.0% | |
| CACCACCTTGAAACTCTTCC+TGG | - | chr1.3:54598519-54598538 | None:intergenic | 50.0% | |
| CAGACATGGAGCAAAGCTCA+GGG | + | chr1.3:54601870-54601889 | MS.gene85562:CDS | 50.0% | |
| CAGATTCTGTGGGGAAACGA+AGG | + | chr1.3:54599859-54599878 | MS.gene85562:CDS | 50.0% | |
| CAGGAAGAGTTTCAAGGTGG+TGG | + | chr1.3:54598517-54598536 | MS.gene85562:CDS | 50.0% | |
| CCCCTTTCGCTTAACGTTAC+TGG | + | chr1.3:54598982-54599001 | MS.gene85562:intron | 50.0% | |
| CTCTCCGAAATGGAGATACG+GGG | - | chr1.3:54599800-54599819 | None:intergenic | 50.0% | |
| CTGAGTGGATCCATCATCCT+TGG | + | chr1.3:54601330-54601349 | MS.gene85562:CDS | 50.0% | |
| CTTAGATGCATTTCCCTCGC+AGG | + | chr1.3:54600807-54600826 | MS.gene85562:intron | 50.0% | |
| GAGCAAAGCTCAGGGAAAGA+TGG | + | chr1.3:54601878-54601897 | MS.gene85562:CDS | 50.0% | |
| GCAGGAACTAATTGCCAAGG+AGG | - | chr1.3:54599309-54599328 | None:intergenic | 50.0% | |
| GGGATCTGTTGTATGAGCCT+TGG | + | chr1.3:54599190-54599209 | MS.gene85562:CDS | 50.0% | |
| GTGGTGCATTCCAAGGATGA+TGG | - | chr1.3:54601343-54601362 | None:intergenic | 50.0% | |
| GTTGGCATTCTTGCCAACTC+AGG | - | chr1.3:54601311-54601330 | None:intergenic | 50.0% | |
| TATTCAAACAGGGCCTGCGA+GGG | - | chr1.3:54600823-54600842 | None:intergenic | 50.0% | |
| TGGCAAGAATGCCAACTGAG+TGG | + | chr1.3:54601315-54601334 | MS.gene85562:CDS | 50.0% | |
| TGGTCTCGAACCAGTGAAAC+AGG | - | chr1.3:54599117-54599136 | None:intergenic | 50.0% | |
| TTATTCAAACAGGGCCTGCG+AGG | - | chr1.3:54600824-54600843 | None:intergenic | 50.0% | |
| TTGTCAGCATTGCTCCAACC+TGG | - | chr1.3:54599691-54599710 | None:intergenic | 50.0% | |
| ! | CTTAGTGTGCTCAGAGCATC+AGG | + | chr1.3:54601362-54601381 | MS.gene85562:CDS | 50.0% |
| ! | GATGCTCTGAGCACACTAAG+TGG | - | chr1.3:54601362-54601381 | None:intergenic | 50.0% |
| !! | AAGCTTCTGGCTCTGAAGCA+AGG | + | chr1.3:54601492-54601511 | MS.gene85562:CDS | 50.0% |
| !! | AGCTTCTGGCTCTGAAGCAA+GGG | + | chr1.3:54601493-54601512 | MS.gene85562:CDS | 50.0% |
| !! | GGATGATGGATCCACTCAGT+TGG | - | chr1.3:54601329-54601348 | None:intergenic | 50.0% |
| ACGCGTTACTAGGACGAGCA+TGG | + | chr1.3:54599662-54599681 | MS.gene85562:CDS | 55.0% | |
| AGCACTAGCTGCTGCTGCTA+GGG | + | chr1.3:54598437-54598456 | MS.gene85562:CDS | 55.0% | |
| ATACGGGGATAACAGCGAGG+TGG | - | chr1.3:54599785-54599804 | None:intergenic | 55.0% | |
| CGTCCTAGTAACGCGTTGCT+TGG | - | chr1.3:54599658-54599677 | None:intergenic | 55.0% | |
| CTCGGCTGGCAGTATATCTC+AGG | + | chr1.3:54600237-54600256 | MS.gene85562:CDS | 55.0% | |
| CTGAGATATACTGCCAGCCG+AGG | - | chr1.3:54600239-54600258 | None:intergenic | 55.0% | |
| GAGAACTTTGGGCTACCGGA+TGG | + | chr1.3:54600091-54600110 | MS.gene85562:CDS | 55.0% | |
| GAGATACGGGGATAACAGCG+AGG | - | chr1.3:54599788-54599807 | None:intergenic | 55.0% | |
| GGAAACGAAGGCAACCGTGT+TGG | + | chr1.3:54599871-54599890 | MS.gene85562:CDS | 55.0% | |
| TGAGCGCTTGGATGATCCTG+AGG | + | chr1.3:54600284-54600303 | MS.gene85562:CDS | 55.0% | |
| ! | AGAGCATCAGGAGTCGAGCT+AGG | + | chr1.3:54601374-54601393 | MS.gene85562:CDS | 55.0% |
| ! | CATTTTCATGCAGGGGCGAC+AGG | + | chr1.3:54602201-54602220 | MS.gene85562:intron | 55.0% |
| ! | GGCTACCCTTTGGTTGATGC+AGG | + | chr1.3:54600063-54600082 | MS.gene85562:CDS | 55.0% |
| !! | AGGTAGGACTGGCTACCCTT+TGG | + | chr1.3:54600053-54600072 | MS.gene85562:CDS | 55.0% |
| CAGCACTAGCTGCTGCTGCT+AGG | + | chr1.3:54598436-54598455 | MS.gene85562:CDS | 60.0% | |
| CTAGCAGCAGCAGCTAGTGC+TGG | - | chr1.3:54598438-54598457 | None:intergenic | 60.0% | |
| CTAGCTGCTGCTGCTAGGGA+TGG | + | chr1.3:54598441-54598460 | MS.gene85562:CDS | 60.0% | |
| CTAGGACGAGCATGGTCTCC+AGG | + | chr1.3:54599670-54599689 | MS.gene85562:CDS | 60.0% | |
| GACGAGCATGGTCTCCAGGT+TGG | + | chr1.3:54599674-54599693 | MS.gene85562:CDS | 60.0% | |
| TTTCATGCAGGGGCGACAGG+AGG | + | chr1.3:54602204-54602223 | MS.gene85562:intron | 60.0% | |
| CGCTCAAGCTCGTGACCGTC+TGG | - | chr1.3:54600270-54600289 | None:intergenic | 65.0% | |
| CGGTCACGAGCTTGAGCGCT+TGG | + | chr1.3:54600272-54600291 | MS.gene85562:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 54598378 | 54602230 | 54598378 | ID=MS.gene85562 |
| chr1.3 | mRNA | 54598378 | 54602230 | 54598378 | ID=MS.gene85562.t1;Parent=MS.gene85562 |
| chr1.3 | exon | 54598378 | 54598687 | 54598378 | ID=MS.gene85562.t1.exon1;Parent=MS.gene85562.t1 |
| chr1.3 | CDS | 54598378 | 54598687 | 54598378 | ID=cds.MS.gene85562.t1;Parent=MS.gene85562.t1 |
| chr1.3 | exon | 54599112 | 54599333 | 54599112 | ID=MS.gene85562.t1.exon2;Parent=MS.gene85562.t1 |
| chr1.3 | CDS | 54599112 | 54599333 | 54599112 | ID=cds.MS.gene85562.t1;Parent=MS.gene85562.t1 |
| chr1.3 | exon | 54599599 | 54600305 | 54599599 | ID=MS.gene85562.t1.exon3;Parent=MS.gene85562.t1 |
| chr1.3 | CDS | 54599599 | 54600305 | 54599599 | ID=cds.MS.gene85562.t1;Parent=MS.gene85562.t1 |
| chr1.3 | exon | 54601257 | 54601899 | 54601257 | ID=MS.gene85562.t1.exon4;Parent=MS.gene85562.t1 |
| chr1.3 | CDS | 54601257 | 54601899 | 54601257 | ID=cds.MS.gene85562.t1;Parent=MS.gene85562.t1 |
| chr1.3 | exon | 54602214 | 54602230 | 54602214 | ID=MS.gene85562.t1.exon5;Parent=MS.gene85562.t1 |
| chr1.3 | CDS | 54602214 | 54602230 | 54602214 | ID=cds.MS.gene85562.t1;Parent=MS.gene85562.t1 |
| Gene Sequence |
| Protein sequence |
