Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86259.t1 | KEH16289.1 | 93.6 | 1044 | 64 | 3 | 1 | 1042 | 23 | 1065 | 0.00E+00 | 1822.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86259.t1 | Q4UM42 | 42.0 | 788 | 437 | 7 | 239 | 1026 | 3 | 770 | 5.3e-182 | 639.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86259.t1 | A0A072TFG8 | 93.6 | 1044 | 64 | 3 | 1 | 1042 | 23 | 1065 | 0.0e+00 | 1822.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049297 | MS.gene86259 | 0.868425 | 6.60E-66 | -1.69E-46 |
| MS.gene050642 | MS.gene86259 | 0.807641 | 4.58E-50 | -1.69E-46 |
| MS.gene051257 | MS.gene86259 | 0.823772 | 1.16E-53 | -1.69E-46 |
| MS.gene051662 | MS.gene86259 | 0.810311 | 1.23E-50 | -1.69E-46 |
| MS.gene052600 | MS.gene86259 | 0.861528 | 9.63E-64 | -1.69E-46 |
| MS.gene054701 | MS.gene86259 | 0.848315 | 6.63E-60 | -1.69E-46 |
| MS.gene054942 | MS.gene86259 | 0.879947 | 8.22E-70 | -1.69E-46 |
| MS.gene055808 | MS.gene86259 | 0.809241 | 2.09E-50 | -1.69E-46 |
| MS.gene058757 | MS.gene86259 | 0.807681 | 4.49E-50 | -1.69E-46 |
| MS.gene058833 | MS.gene86259 | 0.802464 | 5.54E-49 | -1.69E-46 |
| MS.gene060619 | MS.gene86259 | 0.802998 | 4.30E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86259.t1 | MTR_0245s0010 | 96.648 | 1044 | 32 | 3 | 1 | 1042 | 23 | 1065 | 0.0 | 2071 |
| MS.gene86259.t1 | MTR_0245s0010 | 95.564 | 1037 | 44 | 2 | 1 | 1036 | 23 | 1058 | 0.0 | 1924 |
| MS.gene86259.t1 | MTR_1g009315 | 94.828 | 1044 | 51 | 3 | 1 | 1042 | 23 | 1065 | 0.0 | 1919 |
| MS.gene86259.t1 | MTR_1g009315 | 93.828 | 1037 | 62 | 2 | 1 | 1036 | 23 | 1058 | 0.0 | 1889 |
| MS.gene86259.t1 | MTR_0245s0010 | 96.829 | 883 | 27 | 1 | 1 | 883 | 23 | 904 | 0.0 | 1768 |
| MS.gene86259.t1 | MTR_1g009570 | 86.170 | 846 | 114 | 2 | 198 | 1042 | 116 | 959 | 0.0 | 1521 |
| MS.gene86259.t1 | MTR_1g009570 | 65.385 | 78 | 15 | 3 | 1 | 76 | 25 | 92 | 7.08e-20 | 96.3 |
| MS.gene86259.t1 | MTR_2g066840 | 59.948 | 387 | 150 | 2 | 222 | 607 | 120 | 502 | 1.65e-152 | 462 |
| MS.gene86259.t1 | MTR_0229s0020 | 91.827 | 208 | 16 | 1 | 830 | 1036 | 50 | 257 | 7.51e-130 | 394 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86259.t1 | AT4G31210 | 61.239 | 952 | 341 | 9 | 101 | 1032 | 323 | 1266 | 0.0 | 1176 |
| MS.gene86259.t1 | AT4G31210 | 61.239 | 952 | 341 | 9 | 101 | 1032 | 319 | 1262 | 0.0 | 1174 |
| MS.gene86259.t1 | AT4G31210 | 61.580 | 924 | 327 | 9 | 101 | 1004 | 323 | 1238 | 0.0 | 1145 |
| MS.gene86259.t1 | AT5G63920 | 23.770 | 610 | 372 | 20 | 311 | 883 | 118 | 671 | 1.14e-24 | 111 |
| MS.gene86259.t1 | AT2G32000 | 22.601 | 469 | 296 | 16 | 307 | 758 | 107 | 525 | 1.24e-13 | 75.9 |
| MS.gene86259.t1 | AT2G32000 | 22.601 | 469 | 296 | 16 | 307 | 758 | 80 | 498 | 1.44e-13 | 75.9 |
Find 235 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATTTGAGGATTATTTATT+TGG | 0.131805 | 1.3:+10848888 | MS.gene86259:CDS |
| AATAAATTCTGCAGACTTTC+GGG | 0.164617 | 1.3:+10840008 | MS.gene86259:CDS |
| TGAGGTTCTAAATTCATTAA+AGG | 0.210162 | 1.3:+10844603 | MS.gene86259:CDS |
| ACGGGAGATTAATGTGAATT+TGG | 0.228228 | 1.3:+10839666 | MS.gene86259:CDS |
| TTTGGTTCTGGCTACTTTAT+AGG | 0.250431 | 1.3:+10849433 | MS.gene86259:CDS |
| CTATTTAAACCTAGGACTTT+TGG | 0.257007 | 1.3:-10850492 | None:intergenic |
| AAGCACATTAAAAGTATTAA+AGG | 0.269593 | 1.3:+10846614 | MS.gene86259:CDS |
| GGACACGAACGACTCTTGTT+TGG | 0.271516 | 1.3:-10848918 | None:intergenic |
| AAGGCCTCCTTGGAGATTAT+TGG | 0.279369 | 1.3:+10848594 | MS.gene86259:CDS |
| TACATTGCTAAAACATATTA+TGG | 0.281207 | 1.3:+10850417 | MS.gene86259:CDS |
| AATTCAAACCCAAGGAATAT+TGG | 0.295143 | 1.3:+10839842 | MS.gene86259:CDS |
| AAATAAATTCTGCAGACTTT+CGG | 0.296255 | 1.3:+10840007 | MS.gene86259:CDS |
| GTTATTTCAGGTTAAGGATT+TGG | 0.299357 | 1.3:+10851040 | MS.gene86259:intron |
| GATGTTAAGAATGTGGATTT+AGG | 0.300496 | 1.3:+10837727 | MS.gene86259:CDS |
| CGGTCGGTCTAATGGCTTCA+TGG | 0.302889 | 1.3:-10842272 | None:intergenic |
| GTTACGTCTGTTAACAGTTT+TGG | 0.305119 | 1.3:+10837559 | MS.gene86259:CDS |
| AGCTCGAGGGTTGAGTTTCC+TGG | 0.309008 | 1.3:+10843140 | MS.gene86259:CDS |
| GCGTATGTCGGTCGGTCTAA+TGG | 0.312067 | 1.3:-10842280 | None:intergenic |
| ACCATACGACCACGAAATTC+TGG | 0.315865 | 1.3:-10846847 | None:intergenic |
| ATGCGGCATTGATGCTCTTC+AGG | 0.323292 | 1.3:-10839213 | None:intergenic |
| GACTTGTCAGCAATGCTGGC+TGG | 0.324808 | 1.3:+10842392 | MS.gene86259:intron |
| TATTGAGATGTTACAACAAC+AGG | 0.327224 | 1.3:+10839558 | MS.gene86259:CDS |
| GACACGAACGACTCTTGTTT+GGG | 0.329100 | 1.3:-10848917 | None:intergenic |
| TGGAAAACCTGTCATATTAA+AGG | 0.334688 | 1.3:+10851648 | MS.gene86259:CDS |
| ATATTTAAAGTAAGTAGATT+TGG | 0.341322 | 1.3:+10849415 | MS.gene86259:CDS |
| TGGATATCGGGCAGTGTTTA+CGG | 0.342179 | 1.3:+10843160 | MS.gene86259:CDS |
| AACTGCGGTGGCGAGATTAA+TGG | 0.345303 | 1.3:-10837421 | None:intergenic |
| CTTCCTGCTGATTGGCAACT+TGG | 0.346236 | 1.3:-10839766 | None:intergenic |
| ATGTTAAGAATGTGGATTTA+GGG | 0.347366 | 1.3:+10837728 | MS.gene86259:CDS |
| CTCCATAGTCCAATATTCCT+TGG | 0.347393 | 1.3:-10839851 | None:intergenic |
| CACATTACCTTTCAATGATC+AGG | 0.351890 | 1.3:-10840816 | None:intergenic |
| TCAACTTGTTTGAATTGAAA+TGG | 0.352592 | 1.3:-10839936 | None:intergenic |
| TGTTGACTTGTCAGCAATGC+TGG | 0.354414 | 1.3:+10842388 | MS.gene86259:intron |
| TCTGCAACTTTAGTCTTGTC+TGG | 0.357429 | 1.3:-10855230 | None:intergenic |
| AATGATCAGGGAGCGAATAT+TGG | 0.358648 | 1.3:-10840803 | None:intergenic |
| GTTAACAGACGTAACGTTAA+CGG | 0.361744 | 1.3:-10837551 | None:intergenic |
| AGGGCCCTTGATTATTTGAT+TGG | 0.362453 | 1.3:+10839709 | MS.gene86259:CDS |
| TGCTGAGAAATTCAATTTGT+TGG | 0.366733 | 1.3:-10840109 | None:intergenic |
| AAAGTAAGTAGATTTGGTTC+TGG | 0.367955 | 1.3:+10849421 | MS.gene86259:CDS |
| ACTTGTCAGCAATGCTGGCT+GGG | 0.374544 | 1.3:+10842393 | MS.gene86259:intron |
| TCCATAGTCCAATATTCCTT+GGG | 0.384626 | 1.3:-10839850 | None:intergenic |
| AGAGACTTGGCTTCAAGGTC+TGG | 0.385309 | 1.3:+10839127 | MS.gene86259:CDS |
| TGAAGTGTTGATGTTATATA+AGG | 0.386077 | 1.3:-10840075 | None:intergenic |
| AAACTCTTGCCAGGTTGATC+TGG | 0.388672 | 1.3:+10838958 | MS.gene86259:CDS |
| TGAAGCTATACACACTTATA+TGG | 0.391294 | 1.3:+10842435 | MS.gene86259:CDS |
| ATTGAACTCTTCCTGCTGAT+TGG | 0.393543 | 1.3:-10839774 | None:intergenic |
| TCCAAGGAGGCCTTTCCATT+TGG | 0.393684 | 1.3:-10848585 | None:intergenic |
| CTCAAAAGCTAGATCATGAT+TGG | 0.395894 | 1.3:-10844584 | None:intergenic |
| TTAACATTTCGCCATTACTT+TGG | 0.396010 | 1.3:+10839734 | MS.gene86259:CDS |
| TTAAGAAACTTGAAGAGCTT+GGG | 0.399131 | 1.3:+10846568 | MS.gene86259:CDS |
| GGGTTGAGTTTCCTGGATAT+CGG | 0.401164 | 1.3:+10843147 | MS.gene86259:CDS |
| TTTAAATAGTTCAAATGAAA+AGG | 0.402303 | 1.3:+10850506 | MS.gene86259:CDS |
| CAGCTTGATAATGTTTCTGC+TGG | 0.405801 | 1.3:+10848557 | MS.gene86259:intron |
| CAACTTGTTTGAATTGAAAT+GGG | 0.413609 | 1.3:-10839935 | None:intergenic |
| AATGTGCTTGCATACGTTGA+AGG | 0.415183 | 1.3:-10846600 | None:intergenic |
| GGCTCTCCGTTTAATGGTGT+TGG | 0.415415 | 1.3:+10837580 | MS.gene86259:CDS |
| CTGCAACTTTAGTCTTGTCT+GGG | 0.417867 | 1.3:-10855229 | None:intergenic |
| TCTAATATGTGATAGAGAAC+TGG | 0.418028 | 1.3:+10839810 | MS.gene86259:CDS |
| ACCCAAGGAATATTGGACTA+TGG | 0.419244 | 1.3:+10839849 | MS.gene86259:CDS |
| GAAGCCGCTAGGGAAATTTA+CGG | 0.422062 | 1.3:+10838982 | MS.gene86259:CDS |
| TACAATAGTACCTTAGGAAC+AGG | 0.422691 | 1.3:-10851715 | None:intergenic |
| GTTAAGAAACTTGAAGAGCT+TGG | 0.426018 | 1.3:+10846567 | MS.gene86259:CDS |
| AGAGATTAAGAGTGATGAAA+AGG | 0.427092 | 1.3:+10837768 | MS.gene86259:CDS |
| TATCACCTAATAAAAGTTCA+AGG | 0.427134 | 1.3:-10855184 | None:intergenic |
| AAACTTGAAGAGCTTGGGAT+TGG | 0.430510 | 1.3:+10846573 | MS.gene86259:CDS |
| AGCAAGAAATGTTAAGTCCT+TGG | 0.431815 | 1.3:-10839905 | None:intergenic |
| GGGAAGTTCCCTCATCTGCC+TGG | 0.436762 | 1.3:+10839185 | MS.gene86259:CDS |
| ACCAAATGGAAAGGCCTCCT+TGG | 0.442477 | 1.3:+10848584 | MS.gene86259:CDS |
| TATAAGTGTGTATAGCTTCA+AGG | 0.443525 | 1.3:-10842432 | None:intergenic |
| ATGTAAGAGACTTGGCTTCA+AGG | 0.449893 | 1.3:+10839122 | MS.gene86259:CDS |
| GTAACGCAAGTGCTTCTTCA+AGG | 0.452747 | 1.3:-10851073 | None:intergenic |
| GCCAAACAAAACTATGATAG+AGG | 0.460120 | 1.3:+10850467 | MS.gene86259:CDS |
| CGACGGAGAAGAAGAATAAA+CGG | 0.460166 | 1.3:+10837629 | MS.gene86259:CDS |
| ATAGCCTCTCCCTCACGATC+AGG | 0.466381 | 1.3:-10839523 | None:intergenic |
| TTTGCGACCTTTAATATGAC+AGG | 0.467674 | 1.3:-10851655 | None:intergenic |
| TAGGACATTGTCACTGAAGC+TGG | 0.474217 | 1.3:+10844538 | MS.gene86259:intron |
| ATATTAAAGGTCGCAAAGCT+TGG | 0.474359 | 1.3:+10851661 | MS.gene86259:CDS |
| CTCCGTCGCTGTCGACGAGA+AGG | 0.475542 | 1.3:-10837614 | None:intergenic |
| GGTTGAGTTTCCTGGATATC+GGG | 0.479250 | 1.3:+10843148 | MS.gene86259:CDS |
| TAAATCCAATCAAATAATCA+AGG | 0.480541 | 1.3:-10839714 | None:intergenic |
| TGTTTGAATTGAAATGGGTT+AGG | 0.483236 | 1.3:-10839930 | None:intergenic |
| CTCCTTCCAACACCATTAAA+CGG | 0.487600 | 1.3:-10837586 | None:intergenic |
| CATTTGAACTATTTAAACCT+AGG | 0.488092 | 1.3:-10850500 | None:intergenic |
| AACGTGGTGGTGGTTGTGTA+TGG | 0.491520 | 1.3:-10845449 | None:intergenic |
| GACAATTGCTCCTGTTCCTA+AGG | 0.493943 | 1.3:+10851705 | MS.gene86259:CDS |
| TGCAGTTCGTGGTAAGGATA+AGG | 0.496630 | 1.3:+10837672 | MS.gene86259:CDS |
| GTAAACACTGCCCGATATCC+AGG | 0.497529 | 1.3:-10843158 | None:intergenic |
| TGGTTCATGCTTACCTTGCA+CGG | 0.497862 | 1.3:+10839686 | MS.gene86259:CDS |
| CTGATCAGTCTATTGTGTTA+CGG | 0.500748 | 1.3:+10843111 | MS.gene86259:CDS |
| GAAGAATAAACGGAAGAAAA+CGG | 0.502892 | 1.3:+10837639 | MS.gene86259:CDS |
| TTTGACTTGTTTCAGTTGTA+CGG | 0.503033 | 1.3:+10849381 | MS.gene86259:intron |
| TTCTCCGGCTGTAAGCGATT+CGG | 0.503537 | 1.3:+10837867 | MS.gene86259:CDS |
| AGCTGTTGCAGTTCGTGGTA+AGG | 0.503611 | 1.3:+10837666 | MS.gene86259:CDS |
| TTACTTCTGGTGAGGAGGCA+AGG | 0.507160 | 1.3:+10839971 | MS.gene86259:CDS |
| GTTATCTCTCCAGAATTTCG+TGG | 0.507474 | 1.3:+10846838 | MS.gene86259:CDS |
| ACAAGAGTCGTTCGTGTCCA+AGG | 0.509038 | 1.3:+10848922 | MS.gene86259:CDS |
| TCATGCTTACCTTGCACGGA+GGG | 0.510226 | 1.3:+10839690 | MS.gene86259:CDS |
| GTGACAGCTGTTGCAGTTCG+TGG | 0.513246 | 1.3:+10837661 | MS.gene86259:CDS |
| GGTCGGTCTAATGGCTTCAT+GGG | 0.514067 | 1.3:-10842271 | None:intergenic |
| TGTAAGCGATTCGGTGGAAG+TGG | 0.515576 | 1.3:+10837876 | MS.gene86259:CDS |
| GCATCAATGCCGCATTGAGC+GGG | 0.516038 | 1.3:+10839221 | MS.gene86259:CDS |
| AAGAACAGTTTCTTGTCAGA+TGG | 0.518261 | 1.3:+10842460 | MS.gene86259:CDS |
| ACATTTCGCCATTACTTTGG+AGG | 0.518323 | 1.3:+10839737 | MS.gene86259:CDS |
| TTTCTGCTGGAACAACCAAA+TGG | 0.518694 | 1.3:+10848570 | MS.gene86259:CDS |
| CTTGTCAGCAATGCTGGCTG+GGG | 0.519883 | 1.3:+10842394 | MS.gene86259:intron |
| CTACAATTTCACTGCTGACA+TGG | 0.519964 | 1.3:+10847933 | MS.gene86259:CDS |
| AAGTGAAATCACCTATGAAA+AGG | 0.520158 | 1.3:+10855160 | MS.gene86259:CDS |
| CTATGGTCATGTAAGAGACT+TGG | 0.521211 | 1.3:+10839114 | MS.gene86259:CDS |
| TCCAGAATTTCGTGGTCGTA+TGG | 0.521368 | 1.3:+10846846 | MS.gene86259:CDS |
| ACGTTACTCTGAGGCATCAC+TGG | 0.521740 | 1.3:+10845467 | MS.gene86259:CDS |
| AAGCCGCTAGGGAAATTTAC+GGG | 0.523429 | 1.3:+10838983 | MS.gene86259:CDS |
| ATAACATACATCAGAACTGA+TGG | 0.523438 | 1.3:+10840359 | MS.gene86259:CDS |
| CTTGGCTATTCTATTAGACA+TGG | 0.524067 | 1.3:+10851679 | MS.gene86259:CDS |
| GAGGGAGTTGAACTGACTAA+TGG | 0.524427 | 1.3:+10840320 | MS.gene86259:CDS |
| TTAACATCATCTTTAACCAC+AGG | 0.524985 | 1.3:-10837712 | None:intergenic |
| ATAGAGGAACCAAAAGTCCT+AGG | 0.525619 | 1.3:+10850483 | MS.gene86259:CDS |
| GATGCTCTTCAGGTGAGTCC+AGG | 0.531084 | 1.3:-10839203 | None:intergenic |
| TATGAAGTCTTGCCAAGCTA+TGG | 0.531757 | 1.3:+10839097 | MS.gene86259:CDS |
| TACTTCTGGTGAGGAGGCAA+GGG | 0.534533 | 1.3:+10839972 | MS.gene86259:CDS |
| GAAGGAGGTAAACTCTTGCC+AGG | 0.535895 | 1.3:+10838949 | MS.gene86259:CDS |
| AGTTGAACATAGATTCCATA+AGG | 0.536419 | 1.3:-10850643 | None:intergenic |
| CGGATAGTTCTGCTTCTACA+AGG | 0.536894 | 1.3:+10838918 | MS.gene86259:CDS |
| ATCACCTAATAAAAGTTCAA+GGG | 0.537327 | 1.3:-10855183 | None:intergenic |
| AGATGATGTTAAGATTTCTC+CGG | 0.540421 | 1.3:+10837852 | MS.gene86259:CDS |
| TTCTGATGTTCATATTCACC+AGG | 0.540572 | 1.3:+10848646 | MS.gene86259:CDS |
| AAGGTTATTCAGAGATACCT+TGG | 0.542438 | 1.3:+10839067 | MS.gene86259:CDS |
| GATGTTATATAAGGTGTTGG+AGG | 0.543026 | 1.3:-10840066 | None:intergenic |
| GTTGATGTTATATAAGGTGT+TGG | 0.543114 | 1.3:-10840069 | None:intergenic |
| TCCGTCGCTGTCGACGAGAA+GGG | 0.543504 | 1.3:-10837613 | None:intergenic |
| CTCCGTTTAATGGTGTTGGA+AGG | 0.543659 | 1.3:+10837584 | MS.gene86259:CDS |
| AGATCCTGATCGTGAGGGAG+AGG | 0.545114 | 1.3:+10839519 | MS.gene86259:CDS |
| TGCAACTTTAGTCTTGTCTG+GGG | 0.546445 | 1.3:-10855228 | None:intergenic |
| CTGACTAATGGTATATCAGC+GGG | 0.546556 | 1.3:+10840332 | MS.gene86259:CDS |
| AACTGCTTTGCAAACACCAC+GGG | 0.546911 | 1.3:+10839648 | MS.gene86259:CDS |
| GGTGATAAAGTGAGAACTGT+TGG | 0.548395 | 1.3:+10855200 | MS.gene86259:CDS |
| GAGAAACGTACCAATGTCAC+TGG | 0.550451 | 1.3:-10851104 | None:intergenic |
| TAAAGATGATGTTAAGAATG+TGG | 0.550565 | 1.3:+10837720 | MS.gene86259:CDS |
| TATGTTCAACTCGGAGAAGA+CGG | 0.550733 | 1.3:+10850655 | MS.gene86259:CDS |
| TTCCAGATACAACTTGATGT+TGG | 0.550837 | 1.3:+10843083 | MS.gene86259:intron |
| TTCGGTTACTTCTGGTGAGG+AGG | 0.551156 | 1.3:+10839966 | MS.gene86259:CDS |
| GGTTGTGGAGTCTGTTACAA+AGG | 0.551768 | 1.3:+10839042 | MS.gene86259:CDS |
| CTCAGCAAGTCACACAATGA+AGG | 0.552323 | 1.3:+10840125 | MS.gene86259:CDS |
| TCTTTCTTCTTACTCCGCAC+CGG | 0.553140 | 1.3:-10837832 | None:intergenic |
| TGTTACGGTCTGCTAGCTCG+AGG | 0.553663 | 1.3:+10843126 | MS.gene86259:CDS |
| TCCCTTCTCGTCGACAGCGA+CGG | 0.554593 | 1.3:+10837612 | MS.gene86259:CDS |
| TTACCAAGTTGCCAATCAGC+AGG | 0.554681 | 1.3:+10839763 | MS.gene86259:CDS |
| GCCTCAGAGTAACGTGGTGG+TGG | 0.555980 | 1.3:-10845459 | None:intergenic |
| GGGAAAGTCTGTGATGGTTG+TGG | 0.557578 | 1.3:+10839027 | MS.gene86259:CDS |
| GGAACAAGCTGTTCTTGAGA+AGG | 0.557784 | 1.3:+10842481 | MS.gene86259:CDS |
| TGAATGAACGGATAGGAAAA+CGG | 0.558099 | 1.3:-10837489 | None:intergenic |
| CACCATACTAAAATCATCGT+CGG | 0.558958 | 1.3:-10839161 | None:intergenic |
| AGCATCAATGCCGCATTGAG+CGG | 0.560169 | 1.3:+10839220 | MS.gene86259:CDS |
| ATATTATGGTGACGAGGAGG+AGG | 0.562737 | 1.3:+10850431 | MS.gene86259:CDS |
| ATGTTCAACTCGGAGAAGAC+GGG | 0.562952 | 1.3:+10850656 | MS.gene86259:CDS |
| ACCATACTAAAATCATCGTC+GGG | 0.564514 | 1.3:-10839160 | None:intergenic |
| TACCACTTCAAAAGAAACTA+CGG | 0.565894 | 1.3:+10838898 | MS.gene86259:CDS |
| TTTCCCATGGGTGGATACAA+TGG | 0.565995 | 1.3:-10839010 | None:intergenic |
| AATCAAGGGCCCTCCGTGCA+AGG | 0.566678 | 1.3:-10839699 | None:intergenic |
| TCCGGCTGTAAGCGATTCGG+TGG | 0.566721 | 1.3:+10837870 | MS.gene86259:CDS |
| GTTACGGTCTGCTAGCTCGA+GGG | 0.566817 | 1.3:+10843127 | MS.gene86259:CDS |
| GTTGATCTGGAGAAGCCGCT+AGG | 0.568046 | 1.3:+10838971 | MS.gene86259:CDS |
| AAAACCATTGTATCCACCCA+TGG | 0.570983 | 1.3:+10839006 | MS.gene86259:CDS |
| TGTTGATAACGCTGAATGAA+CGG | 0.571063 | 1.3:-10837501 | None:intergenic |
| AGGTGAGTCCAGGCAGATGA+GGG | 0.574847 | 1.3:-10839193 | None:intergenic |
| TCTCTTACATGACCATAGCT+TGG | 0.576525 | 1.3:-10839109 | None:intergenic |
| CAGGTGAGTCCAGGCAGATG+AGG | 0.577157 | 1.3:-10839194 | None:intergenic |
| TGCATCAGATCCTGATCGTG+AGG | 0.579247 | 1.3:+10839513 | MS.gene86259:CDS |
| AATTGATCAATTCAAACCCA+AGG | 0.581974 | 1.3:+10839834 | MS.gene86259:CDS |
| ATCACAGACTTTCCCATGGG+TGG | 0.582611 | 1.3:-10839019 | None:intergenic |
| GGTAACTTGCGTATGTCGGT+CGG | 0.582917 | 1.3:-10842288 | None:intergenic |
| ACATTACCTTTCAATGATCA+GGG | 0.585296 | 1.3:-10840815 | None:intergenic |
| TTCGCTCCCTGATCATTGAA+AGG | 0.587418 | 1.3:+10840809 | MS.gene86259:CDS |
| GGTAACTTCCTCCAAAGTAA+TGG | 0.587971 | 1.3:-10839745 | None:intergenic |
| TTGATCTGGAGAAGCCGCTA+GGG | 0.590160 | 1.3:+10838972 | MS.gene86259:CDS |
| GAATATGAACATCAGAAGTA+CGG | 0.591032 | 1.3:-10848640 | None:intergenic |
| ACTTGTTTCAGTTGTACGGA+AGG | 0.591859 | 1.3:+10849385 | MS.gene86259:intron |
| AAATCCAATCAAATAATCAA+GGG | 0.593996 | 1.3:-10839713 | None:intergenic |
| CGCAAGTGCTTCTTCAAGGG+TGG | 0.594856 | 1.3:-10851069 | None:intergenic |
| GGAGTCTGTTACAAAGGCAA+AGG | 0.595186 | 1.3:+10839048 | MS.gene86259:CDS |
| ACATGGTAACTTGCGTATGT+CGG | 0.597742 | 1.3:-10842292 | None:intergenic |
| CACGATCAGGATCTGATGCA+AGG | 0.598899 | 1.3:-10839510 | None:intergenic |
| AGCGATTCGGTGGAAGTGGT+TGG | 0.599092 | 1.3:+10837880 | MS.gene86259:CDS |
| AGGGAAGAAGACTAATTCAA+AGG | 0.599794 | 1.3:+10837936 | MS.gene86259:CDS |
| GTTACATCTTGTTCAAACTG+AGG | 0.600568 | 1.3:+10845416 | MS.gene86259:CDS |
| GCTGGAACAACCAAATGGAA+AGG | 0.600569 | 1.3:+10848575 | MS.gene86259:CDS |
| TAACGCAAGTGCTTCTTCAA+GGG | 0.605084 | 1.3:-10851072 | None:intergenic |
| CTGCTCTTTGATACTAAACA+TGG | 0.605743 | 1.3:-10839875 | None:intergenic |
| ACCGCGTCCAATAATCTCCA+AGG | 0.610349 | 1.3:-10848601 | None:intergenic |
| AACCATCACAGACTTTCCCA+TGG | 0.612385 | 1.3:-10839023 | None:intergenic |
| GTGAGGGAGAGGCTATCGCT+TGG | 0.621022 | 1.3:+10839530 | MS.gene86259:CDS |
| TCCACCGAATCGCTTACAGC+CGG | 0.623004 | 1.3:-10837871 | None:intergenic |
| TCCTTGGAGATTATTGGACG+CGG | 0.624643 | 1.3:+10848600 | MS.gene86259:CDS |
| ATAACGCTGAATGAACGGAT+AGG | 0.625026 | 1.3:-10837496 | None:intergenic |
| ACTACAATATCCAGTGACAT+TGG | 0.626234 | 1.3:+10851094 | MS.gene86259:CDS |
| CACTGCTGACATGGAAACTG+AGG | 0.627068 | 1.3:+10847942 | MS.gene86259:CDS |
| ACGTGCGGAGGTAACTGCGG+TGG | 0.628679 | 1.3:-10837433 | None:intergenic |
| AAAACGGTTACAGCGGTGAA+CGG | 0.630539 | 1.3:-10837473 | None:intergenic |
| ACCATCACAGACTTTCCCAT+GGG | 0.631567 | 1.3:-10839022 | None:intergenic |
| AAACCATTGTATCCACCCAT+GGG | 0.635514 | 1.3:+10839007 | MS.gene86259:CDS |
| AGAAGAAGAAGAAGCCGGTG+CGG | 0.635585 | 1.3:+10837818 | MS.gene86259:CDS |
| GCAACTTTAGTCTTGTCTGG+GGG | 0.641379 | 1.3:-10855227 | None:intergenic |
| TAGGGTAAGCATCCTGACGA+TGG | 0.648694 | 1.3:+10851628 | MS.gene86259:intron |
| TATGGAATCTATGTTCAACT+CGG | 0.651482 | 1.3:+10850646 | MS.gene86259:CDS |
| GCGGCTTCTCCAGATCAACC+TGG | 0.653095 | 1.3:-10838967 | None:intergenic |
| GCATCAGATCCTGATCGTGA+GGG | 0.655516 | 1.3:+10839514 | MS.gene86259:CDS |
| AAACTGCTTTGCAAACACCA+CGG | 0.658793 | 1.3:+10839647 | MS.gene86259:CDS |
| AACATATTATGGTGACGAGG+AGG | 0.659545 | 1.3:+10850428 | MS.gene86259:CDS |
| CAAGGAATATTGGACTATGG+AGG | 0.662106 | 1.3:+10839852 | MS.gene86259:CDS |
| TATAATACTCACTTGCACCT+CGG | 0.663273 | 1.3:-10849469 | None:intergenic |
| TTAGTTACATTCACGTGCGG+AGG | 0.663278 | 1.3:-10837445 | None:intergenic |
| TTTCCCGTAAATTTCCCTAG+CGG | 0.665996 | 1.3:-10838986 | None:intergenic |
| GAAATTCTGGAGAGATAACA+CGG | 0.666318 | 1.3:-10846834 | None:intergenic |
| ATAAAGTGAGAACTGTTGGT+CGG | 0.668182 | 1.3:+10855204 | MS.gene86259:CDS |
| ACCCATGGGAAAGTCTGTGA+TGG | 0.670381 | 1.3:+10839021 | MS.gene86259:CDS |
| GGACGAGACAGAGACAGTGA+CGG | 0.671568 | 1.3:+10844559 | MS.gene86259:CDS |
| AAATTCACATTAATCTCCCG+TGG | 0.671874 | 1.3:-10839664 | None:intergenic |
| TTCATGCTTACCTTGCACGG+AGG | 0.673339 | 1.3:+10839689 | MS.gene86259:CDS |
| ACTGACTAATGGTATATCAG+CGG | 0.682118 | 1.3:+10840331 | MS.gene86259:CDS |
| CAAAGAGCAGAGATTAACCA+AGG | 0.685631 | 1.3:+10839888 | MS.gene86259:CDS |
| TTCACGTGCGGAGGTAACTG+CGG | 0.687135 | 1.3:-10837436 | None:intergenic |
| ACCACCACCACGTTACTCTG+AGG | 0.689454 | 1.3:+10845458 | MS.gene86259:CDS |
| TCAACTCGGAGAAGACGGGA+AGG | 0.691500 | 1.3:+10850660 | MS.gene86259:CDS |
| ATGTTAGTTACATTCACGTG+CGG | 0.693215 | 1.3:-10837448 | None:intergenic |
| ATTGAGATGTTACAACAACA+GGG | 0.697062 | 1.3:+10839559 | MS.gene86259:CDS |
| TGTGAAATCTAGTGAACCTG+TGG | 0.705640 | 1.3:+10837696 | MS.gene86259:CDS |
| GGATAGGAAAACGGTTACAG+CGG | 0.707796 | 1.3:-10837480 | None:intergenic |
| TAGGCTGTGATCAACATCCG+AGG | 0.711823 | 1.3:+10849452 | MS.gene86259:CDS |
| CTTGCTCAGAAACTCTACGA+GGG | 0.714343 | 1.3:+10840302 | MS.gene86259:CDS |
| GCGTCCAATAATCTCCAAGG+AGG | 0.736331 | 1.3:-10848598 | None:intergenic |
| AGACTTCATACATATCACCA+AGG | 0.741726 | 1.3:-10839084 | None:intergenic |
| TAAAACATATTATGGTGACG+AGG | 0.743355 | 1.3:+10850425 | MS.gene86259:CDS |
| AGTGATGCCTCAGAGTAACG+TGG | 0.746122 | 1.3:-10845465 | None:intergenic |
| GCTTGCTCAGAAACTCTACG+AGG | 0.764842 | 1.3:+10840301 | MS.gene86259:intron |
| GAGAATGTACCCGCTCAATG+CGG | 0.768402 | 1.3:-10839230 | None:intergenic |
| GATGCCTCAGAGTAACGTGG+TGG | 0.781483 | 1.3:-10845462 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 10837397 | 10855265 | 10837397 | ID=MS.gene86259 |
| chr1.3 | mRNA | 10837397 | 10855265 | 10837397 | ID=MS.gene86259.t1;Parent=MS.gene86259 |
| chr1.3 | exon | 10837397 | 10837957 | 10837397 | ID=MS.gene86259.t1.exon1;Parent=MS.gene86259.t1 |
| chr1.3 | CDS | 10837397 | 10837957 | 10837397 | ID=cds.MS.gene86259.t1;Parent=MS.gene86259.t1 |
| chr1.3 | exon | 10838884 | 10839242 | 10838884 | ID=MS.gene86259.t1.exon2;Parent=MS.gene86259.t1 |
| chr1.3 | CDS | 10838884 | 10839242 | 10838884 | ID=cds.MS.gene86259.t1;Parent=MS.gene86259.t1 |
| chr1.3 | exon | 10839495 | 10840146 | 10839495 | ID=MS.gene86259.t1.exon3;Parent=MS.gene86259.t1 |
| chr1.3 | CDS | 10839495 | 10840146 | 10839495 | ID=cds.MS.gene86259.t1;Parent=MS.gene86259.t1 |
| chr1.3 | exon | 10840302 | 10840388 | 10840302 | ID=MS.gene86259.t1.exon4;Parent=MS.gene86259.t1 |
| chr1.3 | CDS | 10840302 | 10840388 | 10840302 | ID=cds.MS.gene86259.t1;Parent=MS.gene86259.t1 |
| chr1.3 | exon | 10840784 | 10840830 | 10840784 | ID=MS.gene86259.t1.exon5;Parent=MS.gene86259.t1 |
| chr1.3 | CDS | 10840784 | 10840830 | 10840784 | ID=cds.MS.gene86259.t1;Parent=MS.gene86259.t1 |
| chr1.3 | exon | 10842203 | 10842312 | 10842203 | ID=MS.gene86259.t1.exon6;Parent=MS.gene86259.t1 |
| chr1.3 | CDS | 10842203 | 10842312 | 10842203 | ID=cds.MS.gene86259.t1;Parent=MS.gene86259.t1 |
| chr1.3 | exon | 10842402 | 10842502 | 10842402 | ID=MS.gene86259.t1.exon7;Parent=MS.gene86259.t1 |
| chr1.3 | CDS | 10842402 | 10842502 | 10842402 | ID=cds.MS.gene86259.t1;Parent=MS.gene86259.t1 |
| chr1.3 | exon | 10843089 | 10843181 | 10843089 | ID=MS.gene86259.t1.exon8;Parent=MS.gene86259.t1 |
| chr1.3 | CDS | 10843089 | 10843181 | 10843089 | ID=cds.MS.gene86259.t1;Parent=MS.gene86259.t1 |
| chr1.3 | exon | 10844541 | 10844624 | 10844541 | ID=MS.gene86259.t1.exon9;Parent=MS.gene86259.t1 |
| chr1.3 | CDS | 10844541 | 10844624 | 10844541 | ID=cds.MS.gene86259.t1;Parent=MS.gene86259.t1 |
| chr1.3 | exon | 10845405 | 10845488 | 10845405 | ID=MS.gene86259.t1.exon10;Parent=MS.gene86259.t1 |
| chr1.3 | CDS | 10845405 | 10845488 | 10845405 | ID=cds.MS.gene86259.t1;Parent=MS.gene86259.t1 |
| chr1.3 | exon | 10846567 | 10846635 | 10846567 | ID=MS.gene86259.t1.exon11;Parent=MS.gene86259.t1 |
| chr1.3 | CDS | 10846567 | 10846635 | 10846567 | ID=cds.MS.gene86259.t1;Parent=MS.gene86259.t1 |
| chr1.3 | exon | 10846808 | 10846867 | 10846808 | ID=MS.gene86259.t1.exon12;Parent=MS.gene86259.t1 |
| chr1.3 | CDS | 10846808 | 10846867 | 10846808 | ID=cds.MS.gene86259.t1;Parent=MS.gene86259.t1 |
| chr1.3 | exon | 10847892 | 10847963 | 10847892 | ID=MS.gene86259.t1.exon13;Parent=MS.gene86259.t1 |
| chr1.3 | CDS | 10847892 | 10847963 | 10847892 | ID=cds.MS.gene86259.t1;Parent=MS.gene86259.t1 |
| chr1.3 | exon | 10848560 | 10848667 | 10848560 | ID=MS.gene86259.t1.exon14;Parent=MS.gene86259.t1 |
| chr1.3 | CDS | 10848560 | 10848667 | 10848560 | ID=cds.MS.gene86259.t1;Parent=MS.gene86259.t1 |
| chr1.3 | exon | 10848867 | 10848943 | 10848867 | ID=MS.gene86259.t1.exon15;Parent=MS.gene86259.t1 |
| chr1.3 | CDS | 10848867 | 10848943 | 10848867 | ID=cds.MS.gene86259.t1;Parent=MS.gene86259.t1 |
| chr1.3 | exon | 10849396 | 10849479 | 10849396 | ID=MS.gene86259.t1.exon16;Parent=MS.gene86259.t1 |
| chr1.3 | CDS | 10849396 | 10849479 | 10849396 | ID=cds.MS.gene86259.t1;Parent=MS.gene86259.t1 |
| chr1.3 | exon | 10850416 | 10850527 | 10850416 | ID=MS.gene86259.t1.exon17;Parent=MS.gene86259.t1 |
| chr1.3 | CDS | 10850416 | 10850527 | 10850416 | ID=cds.MS.gene86259.t1;Parent=MS.gene86259.t1 |
| chr1.3 | exon | 10850625 | 10850714 | 10850625 | ID=MS.gene86259.t1.exon18;Parent=MS.gene86259.t1 |
| chr1.3 | CDS | 10850625 | 10850714 | 10850625 | ID=cds.MS.gene86259.t1;Parent=MS.gene86259.t1 |
| chr1.3 | exon | 10851050 | 10851115 | 10851050 | ID=MS.gene86259.t1.exon19;Parent=MS.gene86259.t1 |
| chr1.3 | CDS | 10851050 | 10851115 | 10851050 | ID=cds.MS.gene86259.t1;Parent=MS.gene86259.t1 |
| chr1.3 | exon | 10851631 | 10851726 | 10851631 | ID=MS.gene86259.t1.exon20;Parent=MS.gene86259.t1 |
| chr1.3 | CDS | 10851631 | 10851726 | 10851631 | ID=cds.MS.gene86259.t1;Parent=MS.gene86259.t1 |
| chr1.3 | exon | 10855149 | 10855265 | 10855149 | ID=MS.gene86259.t1.exon21;Parent=MS.gene86259.t1 |
| chr1.3 | CDS | 10855149 | 10855265 | 10855149 | ID=cds.MS.gene86259.t1;Parent=MS.gene86259.t1 |
| Gene Sequence |
| Protein sequence |
