AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene87692

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene87692.t1 MTR_7g073430 95.053 283 13 1 1 282 1 283 0.0 559
MS.gene87692.t1 MTR_7g073380 84.014 294 35 3 1 282 1 294 0.0 506
MS.gene87692.t1 MTR_0002s1250 44.000 250 123 6 12 255 5 243 8.36e-62 196
MS.gene87692.t1 MTR_8g005750 43.431 274 128 8 15 276 6 264 8.85e-61 194
MS.gene87692.t1 MTR_8g032510 46.262 214 102 4 13 218 7 215 6.43e-56 182
MS.gene87692.t1 MTR_2g075690 38.783 263 124 8 1 229 1 260 1.03e-47 161
MS.gene87692.t1 MTR_2g075700 39.130 253 125 5 6 229 7 259 1.97e-43 150
MS.gene87692.t1 MTR_2g075680 38.060 268 129 7 10 241 12 278 9.06e-40 140
MS.gene87692.t1 MTR_5g067700 38.589 241 109 14 1 237 1 206 8.11e-38 134
MS.gene87692.t1 MTR_3g093830 42.328 189 86 8 20 195 23 201 5.73e-35 128
MS.gene87692.t1 MTR_2g075750 43.976 166 75 5 106 257 13 174 5.88e-35 124
MS.gene87692.t1 MTR_2g075610 54.369 103 46 1 106 207 14 116 2.45e-34 123
MS.gene87692.t1 MTR_7g117200 34.848 198 100 5 11 194 9 191 9.36e-28 109
MS.gene87692.t1 MTR_3g090860 33.990 203 101 4 9 185 2 197 2.40e-26 105
MS.gene87692.t1 MTR_8g099350 33.663 202 101 7 1 180 1 191 8.92e-24 99.4
MS.gene87692.t1 MTR_8g027860 52.941 85 32 1 104 180 111 195 2.95e-23 97.8
MS.gene87692.t1 MTR_5g067680 40.000 115 63 2 67 180 152 261 5.65e-19 85.9
MS.gene87692.t1 MTR_7g028415 55.932 59 23 1 121 179 93 148 5.88e-16 74.3
MS.gene87692.t1 MTR_7g028710 55.932 59 23 1 121 179 93 148 5.88e-16 74.3
MS.gene87692.t1 MTR_5g073620 42.667 75 42 1 117 190 668 742 9.69e-15 74.7
MS.gene87692.t1 MTR_8g092140 42.169 83 38 3 96 178 142 214 6.51e-14 70.1
MS.gene87692.t1 MTR_5g043880 38.710 93 53 2 121 212 124 213 1.44e-13 69.7
MS.gene87692.t1 MTR_1g086790 50.847 59 26 1 121 179 158 213 2.19e-13 69.7
MS.gene87692.t1 MTR_7g110720 39.316 117 65 3 65 178 158 271 2.84e-13 69.7
MS.gene87692.t1 MTR_7g079010 50.000 58 26 1 121 178 141 195 2.89e-13 67.8
MS.gene87692.t1 MTR_3g095080 49.153 59 27 1 121 179 168 223 3.73e-13 67.8
MS.gene87692.t1 MTR_3g095080 49.153 59 27 1 121 179 144 199 5.40e-13 67.0
MS.gene87692.t1 MTR_2g088000 36.449 107 65 2 96 202 325 428 6.30e-13 68.9
MS.gene87692.t1 MTR_7g109800 50.847 59 26 1 121 179 145 200 6.43e-13 67.8
MS.gene87692.t1 MTR_8g096730 48.276 58 27 1 121 178 70 124 6.92e-13 65.1
MS.gene87692.t1 MTR_8g028565 44.872 78 39 2 104 179 136 211 1.15e-12 67.4
MS.gene87692.t1 MTR_4g094588 51.724 58 25 1 121 178 178 232 1.53e-12 67.4
MS.gene87692.t1 MTR_3g053330 38.384 99 58 2 104 202 235 330 1.79e-12 67.4
MS.gene87692.t1 MTR_5g091390 50.000 58 26 1 121 178 157 211 2.26e-12 66.6
MS.gene87692.t1 MTR_8g087000 36.893 103 53 2 115 217 71 161 3.25e-12 65.5
MS.gene87692.t1 MTR_8g087000 36.893 103 53 2 115 217 70 160 3.82e-12 65.1
MS.gene87692.t1 MTR_7g110720 46.053 76 38 2 103 178 172 244 5.53e-12 65.9
MS.gene87692.t1 MTR_8g007270 43.529 85 43 2 94 178 129 208 5.61e-12 64.3
MS.gene87692.t1 MTR_4g049790 39.216 102 51 3 77 178 277 367 6.67e-12 65.9
MS.gene87692.t1 MTR_2g033820 47.458 59 28 1 121 179 203 258 7.62e-12 65.5
MS.gene87692.t1 MTR_2g032030 35.185 108 56 2 83 178 217 322 9.09e-12 65.1
MS.gene87692.t1 MTR_1g009613 36.842 95 56 3 85 178 226 317 9.72e-12 64.7
MS.gene87692.t1 MTR_2g032030 35.185 108 56 2 83 178 217 322 1.12e-11 65.1
MS.gene87692.t1 MTR_4g122530 44.828 58 29 1 121 178 208 262 1.30e-11 64.7
MS.gene87692.t1 MTR_3g104750 47.458 59 28 1 121 179 104 159 2.23e-11 61.6
MS.gene87692.t1 MTR_7g062220 51.724 58 25 1 121 178 124 178 2.57e-11 63.5
MS.gene87692.t1 MTR_4g082580 48.276 58 27 1 121 178 278 332 3.08e-11 63.5
MS.gene87692.t1 MTR_4g127040 40.000 85 40 3 102 178 219 300 3.13e-11 63.2
MS.gene87692.t1 MTR_2g023930 38.384 99 50 2 80 178 273 360 3.19e-11 63.9
MS.gene87692.t1 MTR_1g015140 32.800 125 68 4 66 179 38 157 3.71e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene87692.t1 AT3G56400 41.436 181 82 4 13 180 10 179 1.76e-38 137
MS.gene87692.t1 AT2G40750 35.885 209 102 8 3 180 4 211 1.33e-26 107
MS.gene87692.t1 AT1G66550 32.099 243 138 9 13 248 8 230 4.94e-26 103
MS.gene87692.t1 AT2G46400 33.679 193 93 6 14 194 8 177 2.06e-25 102
MS.gene87692.t1 AT1G66550 33.000 200 111 6 13 210 8 186 4.42e-25 100
MS.gene87692.t1 AT5G01900 34.896 192 103 5 13 197 7 183 5.79e-25 100
MS.gene87692.t1 AT5G22570 33.696 184 103 5 13 190 9 179 4.56e-24 99.0
MS.gene87692.t1 AT4G11070 36.041 197 95 6 11 180 8 200 1.29e-23 98.2
MS.gene87692.t1 AT1G66560 34.706 170 96 4 15 183 10 165 2.52e-23 96.3
MS.gene87692.t1 AT4G11070 37.079 178 87 5 11 180 8 168 2.68e-22 94.0
MS.gene87692.t1 AT2G40740 31.414 191 104 5 15 180 44 232 1.02e-21 92.8
MS.gene87692.t1 AT2G40740 31.414 191 104 5 15 180 53 241 1.14e-21 92.8
MS.gene87692.t1 AT1G66600 33.889 180 88 7 13 183 8 165 3.92e-21 90.1
MS.gene87692.t1 AT4G23810 49.412 85 35 1 104 180 133 217 1.39e-19 87.4
MS.gene87692.t1 AT1G80590 29.648 199 102 5 12 208 7 169 4.09e-19 84.3
MS.gene87692.t1 AT5G24110 33.146 178 92 4 23 185 12 177 1.19e-18 84.3
MS.gene87692.t1 AT5G45260 40.000 105 58 2 79 178 1161 1265 3.00e-15 76.3
MS.gene87692.t1 AT1G69310 36.434 129 64 5 68 186 89 209 5.45e-15 73.9
MS.gene87692.t1 AT1G69310 36.434 129 64 5 68 186 89 209 5.45e-15 73.9
MS.gene87692.t1 AT1G69310 36.434 129 64 5 68 186 89 209 5.45e-15 73.9
MS.gene87692.t1 AT5G13080 50.847 59 26 1 121 179 67 122 1.58e-13 67.0
MS.gene87692.t1 AT5G41570 51.724 58 25 1 121 178 98 152 1.71e-13 67.8
MS.gene87692.t1 AT4G04450 37.719 114 68 2 90 202 166 277 1.98e-13 70.5
MS.gene87692.t1 AT2G34830 35.246 122 65 3 62 178 158 270 2.73e-13 69.7
MS.gene87692.t1 AT2G34830 35.246 122 65 3 62 178 167 279 2.83e-13 69.7
MS.gene87692.t1 AT4G04450 37.719 114 68 2 90 202 260 371 2.87e-13 70.1
MS.gene87692.t1 AT5G49520 49.153 59 27 1 121 179 221 276 3.90e-13 69.3
MS.gene87692.t1 AT3G01970 42.045 88 40 2 121 208 65 141 3.96e-13 65.9
MS.gene87692.t1 AT1G64000 50.000 58 26 1 121 178 114 168 8.33e-13 66.2
MS.gene87692.t1 AT2G47260 37.634 93 54 2 88 179 140 229 8.60e-13 68.2
MS.gene87692.t1 AT1G29860 43.243 74 38 2 106 178 120 190 9.27e-13 67.4
MS.gene87692.t1 AT4G18170 42.169 83 44 2 104 185 154 233 1.77e-12 67.0
MS.gene87692.t1 AT2G37260 46.970 66 32 1 121 186 349 411 1.82e-12 67.4
MS.gene87692.t1 AT2G37260 46.970 66 32 1 121 186 267 329 2.15e-12 67.0
MS.gene87692.t1 AT4G39410 40.000 90 49 2 89 178 193 277 2.16e-12 66.6
MS.gene87692.t1 AT2G37260 46.970 66 32 1 121 186 269 331 2.17e-12 67.0
MS.gene87692.t1 AT2G46130 46.552 58 28 1 121 178 30 84 2.76e-12 62.8
MS.gene87692.t1 AT2G23320 38.462 104 53 3 83 178 195 295 2.77e-12 66.2
MS.gene87692.t1 AT5G46350 46.154 65 32 1 121 185 183 244 3.53e-12 66.2
MS.gene87692.t1 AT2G44745 48.276 58 27 1 121 178 145 199 4.28e-12 64.7
MS.gene87692.t1 AT1G62300 48.649 74 35 2 106 178 296 367 5.02e-12 66.2
MS.gene87692.t1 AT4G01250 36.364 110 62 3 71 178 80 183 1.20e-11 64.3
MS.gene87692.t1 AT1G29280 37.500 88 47 2 97 178 44 129 1.81e-11 63.5
MS.gene87692.t1 AT5G52830 53.704 54 23 1 126 179 170 221 2.14e-11 63.9
MS.gene87692.t1 AT3G62340 43.590 78 36 2 121 198 118 187 2.95e-11 63.2
MS.gene87692.t1 AT4G22070 42.308 78 42 2 101 178 278 352 3.68e-11 63.5
MS.gene87692.t1 AT4G22070 42.308 78 42 2 101 178 278 352 3.68e-11 63.5
MS.gene87692.t1 AT4G22070 42.308 78 42 2 101 178 278 352 3.68e-11 63.5
MS.gene87692.t1 AT4G22070 42.308 78 42 2 101 178 278 352 3.68e-11 63.5
MS.gene87692.t1 AT5G26170 44.828 58 29 1 121 178 113 167 4.51e-11 60.8
MS.gene87692.t1 AT1G68150 34.247 146 71 5 122 257 236 366 6.57e-11 62.8
MS.gene87692.t1 AT5G45050 35.185 108 56 3 81 178 993 1096 9.03e-11 62.8
MS.gene87692.t1 AT5G45050 35.185 108 56 3 81 178 1132 1235 9.97e-11 62.8

Find 63 sgRNAs with CRISPR-Local

Find 123 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGATAATCCACCATGATTTC+AGG 0.223815 7.1:-28912902 None:intergenic
GTGGATCTTCTTGAATTCTT+TGG 0.233438 7.1:-28912826 None:intergenic
TTTAAGAAAGAGGCCAATTA+AGG 0.247289 7.1:-28913174 None:intergenic
CACCAAATCTGAAGACTCTT+TGG 0.292085 7.1:+28911076 MS.gene87692:CDS
CATACATGATATCAGAAATA+TGG 0.313913 7.1:-28913144 None:intergenic
CTTCACAAGACAACCTATTC+TGG 0.318721 7.1:+28912851 MS.gene87692:CDS
TTCCAAAGAGTCTTCAGATT+TGG 0.321094 7.1:-28911078 None:intergenic
GGTTATTGTTCAAGAACAAT+AGG 0.331883 7.1:-28911025 None:intergenic
TAAGTTGGTTTGCAAGTTGA+TGG 0.334142 7.1:-28910899 None:intergenic
TGTATGATGATGTCCTTAAT+TGG 0.354460 7.1:+28913161 MS.gene87692:CDS
TTGCAAGAGTTCCATTGTTA+AGG 0.357033 7.1:+28911106 MS.gene87692:CDS
ATAAATATACCTTGGAAAAT+CGG 0.383422 7.1:-28911983 None:intergenic
GGTCATCAGTGGAGAAAGTA+TGG 0.398881 7.1:+28911940 MS.gene87692:CDS
CATTAAGAATATTTCTAAGT+TGG 0.405861 7.1:-28910914 None:intergenic
TTCAAAAGATCTTCAGCAAA+TGG 0.413114 7.1:-28910975 None:intergenic
CCTTCAAATGATTACCTCTC+TGG 0.419974 7.1:+28913049 MS.gene87692:CDS
AGAAATATTCTTAATGAAAG+TGG 0.420955 7.1:+28910921 MS.gene87692:CDS
GTTATTGTTCAAGAACAATA+GGG 0.426826 7.1:-28911024 None:intergenic
CAGTCTTGTTTGGCTGGTGT+TGG 0.428837 7.1:-28912968 None:intergenic
GAGAAAAGGACAGTCTTGTT+TGG 0.431212 7.1:-28912978 None:intergenic
ATAGTTGATGAGTTGTTAAG+AGG 0.433990 7.1:+28910876 MS.gene87692:CDS
GCAAGATTCTACAAGTATGA+TGG 0.441895 7.1:-28912874 None:intergenic
GATAATCCACCATGATTTCA+GGG 0.452507 7.1:-28912901 None:intergenic
AGTCTTGTTTGGCTGGTGTT+GGG 0.452762 7.1:-28912967 None:intergenic
AAAGGAGGAGTGCAAGGAAG+AGG 0.462606 7.1:+28913009 MS.gene87692:CDS
CCAGAGAGGTAATCATTTGA+AGG 0.464626 7.1:-28913049 None:intergenic
CTTGCAAAACCCTGAAATCA+TGG 0.466864 7.1:+28912892 MS.gene87692:CDS
AAAGGACAGTCTTGTTTGGC+TGG 0.470880 7.1:-28912974 None:intergenic
CACTGATGACCATCTTCCTC+AGG 0.473789 7.1:-28911928 None:intergenic
TAATCATTTGAAGGAGGAGG+AGG 0.475507 7.1:-28913040 None:intergenic
AATCTAGCTCATGGTGGTCG+TGG 0.489503 7.1:+28910849 MS.gene87692:CDS
AGGTAATCATTTGAAGGAGG+AGG 0.500051 7.1:-28913043 None:intergenic
CAGGAAAATTTCACAAACAT+GGG 0.503777 7.1:+28911888 MS.gene87692:intron
ACAAGTATGATGGCCAGAAT+AGG 0.508994 7.1:-28912864 None:intergenic
AAATCAGAGCCCTCAGAAGT+AGG 0.513880 7.1:-28911047 None:intergenic
TCTGAGCTGCCTGAGGAAGA+TGG 0.519536 7.1:+28911919 MS.gene87692:CDS
ACAGGAAAATTTCACAAACA+TGG 0.526761 7.1:+28911887 MS.gene87692:intron
AATCAGAGCCCTCAGAAGTA+GGG 0.528391 7.1:-28911046 None:intergenic
GAACAATAGGGAATTAGTAA+AGG 0.532955 7.1:-28911012 None:intergenic
GAAGAGGCTGTTACAAAAGA+AGG 0.533769 7.1:+28911132 MS.gene87692:CDS
GGTGATATTGATAATAATGA+TGG 0.535663 7.1:+28910942 MS.gene87692:CDS
GAAAATGAAAATCTAGCTCA+TGG 0.549115 7.1:+28910840 MS.gene87692:CDS
AACAATAACCCTACTTCTGA+GGG 0.553155 7.1:+28911038 MS.gene87692:CDS
GAACAATAACCCTACTTCTG+AGG 0.557215 7.1:+28911037 MS.gene87692:CDS
GCCTCTTCGTTCCTTAACAA+TGG 0.560157 7.1:-28911117 None:intergenic
CAATAGGGAATTAGTAAAGG+TGG 0.561256 7.1:-28911009 None:intergenic
TGCACTCACAAACATGATCA+AGG 0.563442 7.1:+28912782 MS.gene87692:CDS
TGCTTTGCAGAAACTACTAC+AGG 0.577466 7.1:+28912759 MS.gene87692:intron
AAGAAACACGGAAGAGTGAT+CGG 0.578189 7.1:-28912927 None:intergenic
TAGGTTGTCTTGTGAAGAGG+TGG 0.580386 7.1:-28912845 None:intergenic
GAAGGAGTCTGAGCTGCCTG+AGG 0.592747 7.1:+28911912 MS.gene87692:CDS
AATTTCACAAACATGGGAGA+AGG 0.598123 7.1:+28911894 MS.gene87692:CDS
GAATAGGTTGTCTTGTGAAG+AGG 0.606524 7.1:-28912848 None:intergenic
TATCAGAAATATGGACACCT+AGG 0.634267 7.1:-28913135 None:intergenic
GAGAGGTAATCATTTGAAGG+AGG 0.645608 7.1:-28913046 None:intergenic
TCCATTGTTAAGGAACGAAG+AGG 0.645691 7.1:+28911116 MS.gene87692:CDS
AACACGGAAGAGTGATCGGT+AGG 0.657967 7.1:-28912923 None:intergenic
CTTGATTCTCATGATCACCT+AGG 0.662285 7.1:+28913118 MS.gene87692:CDS
CTGAGGAAGATGGTCATCAG+TGG 0.677795 7.1:+28911929 MS.gene87692:CDS
CATCAAAAGTTAGTCCAGAG+AGG 0.687787 7.1:-28913063 None:intergenic
GTTGTCAAAACTAAGAAACA+CGG 0.709857 7.1:-28912939 None:intergenic
AATGAAAATCTAGCTCATGG+TGG 0.721998 7.1:+28910843 MS.gene87692:CDS
GCAAAACCCTGAAATCATGG+TGG 0.724951 7.1:+28912895 MS.gene87692:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTATTATTATTATTATTT+TGG + chr7.1:28911580-28911599 MS.gene87692:intron 0.0%
!! TTCTTAAAAAAAAAAAAAGA+AGG - chr7.1:28911394-28911413 None:intergenic 10.0%
!!! AACTAAATCTTATTTATTAA+AGG - chr7.1:28912311-28912330 None:intergenic 10.0%
!!! TTTTTTTTTTTTGTTACAAT+TGG + chr7.1:28911830-28911849 MS.gene87692:intron 10.0%
!! AAAATTCAGGTATTAATTTA+AGG + chr7.1:28912367-28912386 MS.gene87692:intron 15.0%
!! GTTAGTTAATTTATTGAATT+AGG - chr7.1:28912093-28912112 None:intergenic 15.0%
!!! TGTTTTGAAAATTAATTAAC+CGG - chr7.1:28912481-28912500 None:intergenic 15.0%
!!! TTTACTATATAGTTTTGTTT+AGG + chr7.1:28911352-28911371 MS.gene87692:intron 15.0%
!! AAATGTGGATATAGATATAA+TGG - chr7.1:28911309-28911328 None:intergenic 20.0%
!! AAGGACTATGTTATATAATT+AGG + chr7.1:28911680-28911699 MS.gene87692:intron 20.0%
!! AATGTGGATATAGATATAAT+GGG - chr7.1:28911308-28911327 None:intergenic 20.0%
!! AGAAATATTCTTAATGAAAG+TGG + chr7.1:28910921-28910940 MS.gene87692:CDS 20.0%
!! ATAAATATACCTTGGAAAAT+CGG - chr7.1:28911986-28912005 None:intergenic 20.0%
!! TACATTAGTCAATAAATAAG+AGG - chr7.1:28911447-28911466 None:intergenic 20.0%
!!! ACAACAACAAAAGTATTAAT+TGG - chr7.1:28911542-28911561 None:intergenic 20.0%
!!! CATTAAGAATATTTCTAAGT+TGG - chr7.1:28910917-28910936 None:intergenic 20.0%
!!! CTTTTACATATGAGTAATAT+TGG + chr7.1:28911628-28911647 MS.gene87692:intron 20.0%
!!! TATATACAATTCTTGTTTAC+AGG + chr7.1:28911869-28911888 MS.gene87692:intron 20.0%
!!! TTCACTTATATTTGAACTTT+TGG + chr7.1:28911469-28911488 MS.gene87692:intron 20.0%
!!! TTTCTAAAGTTTGTTAGTTA+TGG + chr7.1:28911728-28911747 MS.gene87692:intron 20.0%
! AAAAGAAGTCAACTCTTAAA+TGG - chr7.1:28911236-28911255 None:intergenic 25.0%
! AAACGAGCAAATTAATAAAG+AGG - chr7.1:28911711-28911730 None:intergenic 25.0%
! AAATTGTAGATGTAGAAATG+TGG - chr7.1:28911324-28911343 None:intergenic 25.0%
! AATTGAATGACCTTGTAAAA+AGG - chr7.1:28912433-28912452 None:intergenic 25.0%
! ATGATGAACAATAATTGATG+GGG - chr7.1:28911655-28911674 None:intergenic 25.0%
! ATTTATTAGCTAGCATCTTA+GGG + chr7.1:28912583-28912602 MS.gene87692:intron 25.0%
! CATACATGATATCAGAAATA+TGG - chr7.1:28913147-28913166 None:intergenic 25.0%
! GACAAACAATAACAAAAGTA+TGG - chr7.1:28911609-28911628 None:intergenic 25.0%
! GATGATGAACAATAATTGAT+GGG - chr7.1:28911656-28911675 None:intergenic 25.0%
! GTTATTGTTCAAGAACAATA+GGG - chr7.1:28911027-28911046 None:intergenic 25.0%
! TAGAAACTCCCTTATAAAAA+AGG - chr7.1:28912030-28912049 None:intergenic 25.0%
! TATTTATTAGCTAGCATCTT+AGG + chr7.1:28912582-28912601 MS.gene87692:intron 25.0%
! TTATTGTTCATCATCATTGA+AGG + chr7.1:28911661-28911680 MS.gene87692:intron 25.0%
!! GGTGATATTGATAATAATGA+TGG + chr7.1:28910942-28910961 MS.gene87692:CDS 25.0%
!! TATATTTGAACTTTTGGATG+AGG + chr7.1:28911475-28911494 MS.gene87692:intron 25.0%
!! TATTGATTAGTAAGAAGTAG+AGG - chr7.1:28912715-28912734 None:intergenic 25.0%
!! TGATGATGAACAATAATTGA+TGG - chr7.1:28911657-28911676 None:intergenic 25.0%
ACAGGAAAATTTCACAAACA+TGG + chr7.1:28911887-28911906 MS.gene87692:intron 30.0%
CACACACATATATCATTTCT+TGG + chr7.1:28911802-28911821 MS.gene87692:intron 30.0%
CACTATTTGTACAAATTGTC+CGG + chr7.1:28912459-28912478 MS.gene87692:intron 30.0%
CAGGAAAATTTCACAAACAT+GGG + chr7.1:28911888-28911907 MS.gene87692:intron 30.0%
CCTTATAAAAAAGGTTTGTG+CGG - chr7.1:28912021-28912040 None:intergenic 30.0%
GAACAATAGGGAATTAGTAA+AGG - chr7.1:28911015-28911034 None:intergenic 30.0%
GGTTATTGTTCAAGAACAAT+AGG - chr7.1:28911028-28911047 None:intergenic 30.0%
GTTGTCAAAACTAAGAAACA+CGG - chr7.1:28912942-28912961 None:intergenic 30.0%
TGTGTCGTATAAATATACCT+TGG - chr7.1:28911994-28912013 None:intergenic 30.0%
TTAACTGTTGAGATTTGACT+TGG + chr7.1:28912518-28912537 MS.gene87692:intron 30.0%
TTCAAAAGATCTTCAGCAAA+TGG - chr7.1:28910978-28910997 None:intergenic 30.0%
! ATAGATATAATGGGAGAGTT+AGG - chr7.1:28911299-28911318 None:intergenic 30.0%
! CTAGAAATGACCTTTTTACA+AGG + chr7.1:28912420-28912439 MS.gene87692:intron 30.0%
! GAAAATGAAAATCTAGCTCA+TGG + chr7.1:28910840-28910859 MS.gene87692:CDS 30.0%
! TAGATATAATGGGAGAGTTA+GGG - chr7.1:28911298-28911317 None:intergenic 30.0%
! TGTATGATGATGTCCTTAAT+TGG + chr7.1:28913161-28913180 MS.gene87692:CDS 30.0%
!! AACTTTTGATGATCCAGAAA+AGG + chr7.1:28913075-28913094 MS.gene87692:CDS 30.0%
!! ATAGTTGATGAGTTGTTAAG+AGG + chr7.1:28910876-28910895 MS.gene87692:CDS 30.0%
!! ATTTGCTGAAGATCTTTTGA+AGG + chr7.1:28910977-28910996 MS.gene87692:CDS 30.0%
!! TTTTTCAAACACACTGCTTA+GGG + chr7.1:28911265-28911284 MS.gene87692:intron 30.0%
!!! CGCACAAACCTTTTTTATAA+GGG + chr7.1:28912019-28912038 MS.gene87692:intron 30.0%
!!! TTTTTTCAAACACACTGCTT+AGG + chr7.1:28911264-28911283 MS.gene87692:intron 30.0%
AACAATAACCCTACTTCTGA+GGG + chr7.1:28911038-28911057 MS.gene87692:CDS 35.0%
AATTTCACAAACATGGGAGA+AGG + chr7.1:28911894-28911913 MS.gene87692:CDS 35.0%
CAATAGGGAATTAGTAAAGG+TGG - chr7.1:28911012-28911031 None:intergenic 35.0%
GATAATCCACCATGATTTCA+GGG - chr7.1:28912904-28912923 None:intergenic 35.0%
GCAAGATTCTACAAGTATGA+TGG - chr7.1:28912877-28912896 None:intergenic 35.0%
GTGGATCTTCTTGAATTCTT+TGG - chr7.1:28912829-28912848 None:intergenic 35.0%
TAACCTTTGACCTAAATCAC+TGG - chr7.1:28912619-28912638 None:intergenic 35.0%
TATCAGAAATATGGACACCT+AGG - chr7.1:28913138-28913157 None:intergenic 35.0%
TGAACTGAAAGAGTTTCTGA+TGG + chr7.1:28912641-28912660 MS.gene87692:intron 35.0%
TTCCAAAGAGTCTTCAGATT+TGG - chr7.1:28911081-28911100 None:intergenic 35.0%
TTGCAAGAGTTCCATTGTTA+AGG + chr7.1:28911106-28911125 MS.gene87692:CDS 35.0%
TTGTTAGTTATGGTTTGAGC+TGG + chr7.1:28911738-28911757 MS.gene87692:intron 35.0%
! AATGAAAATCTAGCTCATGG+TGG + chr7.1:28910843-28910862 MS.gene87692:CDS 35.0%
!! TAAGTTGGTTTGCAAGTTGA+TGG - chr7.1:28910902-28910921 None:intergenic 35.0%
!!! CCGCACAAACCTTTTTTATA+AGG + chr7.1:28912018-28912037 MS.gene87692:intron 35.0%
!!! CGGTGTGCAAAATCTTTTTT+TGG - chr7.1:28911966-28911985 None:intergenic 35.0%
AAGAAACACGGAAGAGTGAT+CGG - chr7.1:28912930-28912949 None:intergenic 40.0%
ACAAGTATGATGGCCAGAAT+AGG - chr7.1:28912867-28912886 None:intergenic 40.0%
AGGTAATCATTTGAAGGAGG+AGG - chr7.1:28913046-28913065 None:intergenic 40.0%
CACCAAATCTGAAGACTCTT+TGG + chr7.1:28911076-28911095 MS.gene87692:CDS 40.0%
CATCAAAAGTTAGTCCAGAG+AGG - chr7.1:28913066-28913085 None:intergenic 40.0%
CCAGAGAGGTAATCATTTGA+AGG - chr7.1:28913052-28913071 None:intergenic 40.0%
CCTTCAAATGATTACCTCTC+TGG + chr7.1:28913049-28913068 MS.gene87692:CDS 40.0%
CTTCACAAGACAACCTATTC+TGG + chr7.1:28912851-28912870 MS.gene87692:CDS 40.0%
CTTGATTCTCATGATCACCT+AGG + chr7.1:28913118-28913137 MS.gene87692:CDS 40.0%
CTTGCAAAACCCTGAAATCA+TGG + chr7.1:28912892-28912911 MS.gene87692:CDS 40.0%
GAACAATAACCCTACTTCTG+AGG + chr7.1:28911037-28911056 MS.gene87692:CDS 40.0%
GAAGAGGCTGTTACAAAAGA+AGG + chr7.1:28911132-28911151 MS.gene87692:CDS 40.0%
GAATAGGTTGTCTTGTGAAG+AGG - chr7.1:28912851-28912870 None:intergenic 40.0%
GAGAGGTAATCATTTGAAGG+AGG - chr7.1:28913049-28913068 None:intergenic 40.0%
GGATAATCCACCATGATTTC+AGG - chr7.1:28912905-28912924 None:intergenic 40.0%
TAATCATTTGAAGGAGGAGG+AGG - chr7.1:28913043-28913062 None:intergenic 40.0%
TCCATTGTTAAGGAACGAAG+AGG + chr7.1:28911116-28911135 MS.gene87692:CDS 40.0%
TGCACTCACAAACATGATCA+AGG + chr7.1:28912782-28912801 MS.gene87692:CDS 40.0%
TGCTTTGCAGAAACTACTAC+AGG + chr7.1:28912759-28912778 MS.gene87692:intron 40.0%
TTGAGTAGGTCCAGTGATTT+AGG + chr7.1:28912606-28912625 MS.gene87692:intron 40.0%
! ACAAGACTGTCCTTTTCTCT+CGG + chr7.1:28912982-28913001 MS.gene87692:CDS 40.0%
! GATAGTGTGACATCCTTTTC+TGG - chr7.1:28913091-28913110 None:intergenic 40.0%
! TCCTTTTCTCTCGGTGAAAA+AGG + chr7.1:28912991-28913010 MS.gene87692:CDS 40.0%
! TTTTCTCTCGGTGAAAAAGG+AGG + chr7.1:28912994-28913013 MS.gene87692:CDS 40.0%
!! GAGAAAAGGACAGTCTTGTT+TGG - chr7.1:28912981-28913000 None:intergenic 40.0%
!! TCCTTTTTCACCGAGAGAAA+AGG - chr7.1:28912995-28913014 None:intergenic 40.0%
!!! TTTTGCACACCGATTTTCCA+AGG + chr7.1:28911974-28911993 MS.gene87692:CDS 40.0%
AAATCAGAGCCCTCAGAAGT+AGG - chr7.1:28911050-28911069 None:intergenic 45.0%
AATCAGAGCCCTCAGAAGTA+GGG - chr7.1:28911049-28911068 None:intergenic 45.0%
CTAGCATCTTAGGGTTGAGT+AGG + chr7.1:28912592-28912611 MS.gene87692:intron 45.0%
GCAAAACCCTGAAATCATGG+TGG + chr7.1:28912895-28912914 MS.gene87692:CDS 45.0%
GCCTCTTCGTTCCTTAACAA+TGG - chr7.1:28911120-28911139 None:intergenic 45.0%
GGTCATCAGTGGAGAAAGTA+TGG + chr7.1:28911940-28911959 MS.gene87692:CDS 45.0%
GGTCCAGTGATTTAGGTCAA+AGG + chr7.1:28912613-28912632 MS.gene87692:intron 45.0%
TAGGTTGTCTTGTGAAGAGG+TGG - chr7.1:28912848-28912867 None:intergenic 45.0%
!! AAAGGACAGTCTTGTTTGGC+TGG - chr7.1:28912977-28912996 None:intergenic 45.0%
!! AGTCTTGTTTGGCTGGTGTT+GGG - chr7.1:28912970-28912989 None:intergenic 45.0%
!! ATAATTTAAAAAAAAAATTC+AGG + chr7.1:28912354-28912373 MS.gene87692:intron 5.0%
!!! TTTAAGAAAATATTTTATTT+TGG + chr7.1:28911406-28911425 MS.gene87692:intron 5.0%
AACACGGAAGAGTGATCGGT+AGG - chr7.1:28912926-28912945 None:intergenic 50.0%
CACTGATGACCATCTTCCTC+AGG - chr7.1:28911931-28911950 None:intergenic 50.0%
CTGAGGAAGATGGTCATCAG+TGG + chr7.1:28911929-28911948 MS.gene87692:CDS 50.0%
! AAAGGAGGAGTGCAAGGAAG+AGG + chr7.1:28913009-28913028 MS.gene87692:CDS 50.0%
! AATCTAGCTCATGGTGGTCG+TGG + chr7.1:28910849-28910868 MS.gene87692:CDS 50.0%
! GGTGAAAAAGGAGGAGTGCA+AGG + chr7.1:28913003-28913022 MS.gene87692:CDS 50.0%
!! CAGTCTTGTTTGGCTGGTGT+TGG - chr7.1:28912971-28912990 None:intergenic 50.0%
TCTGAGCTGCCTGAGGAAGA+TGG + chr7.1:28911919-28911938 MS.gene87692:CDS 55.0%
GAAGGAGTCTGAGCTGCCTG+AGG + chr7.1:28911912-28911931 MS.gene87692:CDS 60.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 28910837 28913195 28910837 ID=MS.gene87692
chr7.1 mRNA 28910837 28913195 28910837 ID=MS.gene87692.t1;Parent=MS.gene87692
chr7.1 exon 28910837 28911153 28910837 ID=MS.gene87692.t1.exon1;Parent=MS.gene87692.t1
chr7.1 CDS 28910837 28911153 28910837 ID=cds.MS.gene87692.t1;Parent=MS.gene87692.t1
chr7.1 exon 28911891 28911995 28911891 ID=MS.gene87692.t1.exon2;Parent=MS.gene87692.t1
chr7.1 CDS 28911891 28911995 28911891 ID=cds.MS.gene87692.t1;Parent=MS.gene87692.t1
chr7.1 exon 28912769 28913195 28912769 ID=MS.gene87692.t1.exon3;Parent=MS.gene87692.t1
chr7.1 CDS 28912769 28913195 28912769 ID=cds.MS.gene87692.t1;Parent=MS.gene87692.t1
Gene Sequence

>MS.gene87692

ATGGAAAATGAAAATCTAGCTCATGGTGGTCGTGGAAAGATAGTTGATGAGTTGTTAAGAGGCCATCAACTTGCAAACCAACTTAGAAATATTCTTAATGAAAGTGGTGATATTGATAATAATGATGGATCAACAATACCATTTGCTGAAGATCTTTTGAAGGAAGTGCTTACCACCTTTACTAATTCCCTATTGTTCTTGAACAATAACCCTACTTCTGAGGGCTCTGATTTGCAACTCACCAAATCTGAAGACTCTTTGGAAAGTAATTGCAAGAGTTCCATTGTTAAGGAACGAAGAGGCTGTTACAAAAGAAGGTAATTATTATTACTTAGTAATTTTTATTATATTTCTTATTGTTTTATAAATCTTTGTATATGTGTGCGCATCTGAGATCCATTTAAGAGTTGACTTCTTTTAACATATATTTTTTCAAACACACTGCTTAGGGATTGAATCCCTAACTCTCCCATTATATCTATATCCACATTTCTACATCTACAATTTGTACATGATTTACTATATAGTTTTGTTTAGGAATATAGTGCTTTTTTCCTTCTTTTTTTTTTTTTAAGAAAATATTTTATTTTGGCTGATATATTTTTTTCCTCTTATTTATTGACTAATGTAATTTCACTTATATTTGAACTTTTGGATGAGGTAATGTATGCTTTGTTATTTAATTTGATTACAGACTATTAGCCAATTAATACTTTTGTTGTTGTTATTATTATTATTATTATTATTATTATTATTATTATTTTGGTGACCATACTTTTGTTATTGTTTGTCTTTTACATATGAGTAATATTGGACCCCATCAATTATTGTTCATCATCATTGAAGGACTATGTTATATAATTAGGAACGTCCTCTTTATTAATTTGCTCGTTTCTAAAGTTTGTTAGTTATGGTTTGAGCTGGCACAGTAAAATTATTTGATTATATATATGTGTCTACACACACACACACATATATCATTTCTTGGTTGAGTTTTTTTTTTTTGTTACAATTGGAAAACTTATCAGAAAATATATACAATTCTTGTTTACAGGAAAATTTCACAAACATGGGAGAAGGAGTCTGAGCTGCCTGAGGAAGATGGTCATCAGTGGAGAAAGTATGGCCAAAAAAAGATTTTGCACACCGATTTTCCAAGGTATATTTATACGACACATTAACCGCACAAACCTTTTTTATAAGGGAGTTTCTACTACACACTTGTAAATTGATGTGTATCGATGCACTTGTTTCCTAATTCAATAAATTAACTAACATTTTTATTAATTGAAAAAGTTATTTGTCGATTTTATATTTTAGAAAACACTATTTCATAAGAAAAAAAATATCATTTCATTGTTTATTAAGAATCATACTGAATATTTTACATTTTATAGCAAAAATAAATAAATCAGTATTCACTATTATGAGTAATAAATATTTAAAACAATAAAATTTTATTTCATTGAAACCTTTAATAAATAAGATTTAGTTATTATAATTGTAAATGATAGAAAATAATTTAAAAAAAAAATTCAGGTATTAATTTAAGGACTCAATGCACTCGAATTTTCAAGTGTAAACTAGAAATGACCTTTTTACAAGGTCATTCAATTAAATTTCACTATTTGTACAAATTGTCCGGTTAATTAATTTTCAAAACAATTAATCTAAATTATCATTAACTGTTGAGATTTGACTTGGTTTAATTTATGTATGTCTCTTATATCTGTTTATATGAAATTTATTTATTAGCTAGCATCTTAGGGTTGAGTAGGTCCAGTGATTTAGGTCAAAGGTTAATTGAACTGAAAGAGTTTCTGATGGATAAATAGACATGACAACTAATTAATATTTGTTAATACAAACAAAAATCCTCTACTTCTTACTAATCAATATCACTAAATGAATATGTACTTATGTGCTTTGCAGAAACTACTACAGGTGCACTCACAAACATGATCAAGGTTGCAAAGCAACAAAACAAGTCCAAAGAATTCAAGAAGATCCACCTCTTCACAAGACAACCTATTCTGGCCATCATACTTGTAGAATCTTGCAAAACCCTGAAATCATGGTGGATTATCCTACCGATCACTCTTCCGTGTTTCTTAGTTTTGACAACTCTTTCCCAACACCAGCCAAACAAGACTGTCCTTTTCTCTCGGTGAAAAAGGAGGAGTGCAAGGAAGAGGTTGTTCATCCTCCTCCTCCTTCAAATGATTACCTCTCTGGACTAACTTTTGATGATCCAGAAAAGGATGTCACACTATCATCAACACTTGATTCTCATGATCACCTAGGTGTCCATATTTCTGATATCATGTATGATGATGTCCTTAATTGGCCTCTTTCTTAA
Protein sequence

>MS.gene87692.t1

MENENLAHGGRGKIVDELLRGHQLANQLRNILNESGDIDNNDGSTIPFAEDLLKEVLTTFTNSLLFLNNNPTSEGSDLQLTKSEDSLESNCKSSIVKERRGCYKRRKISQTWEKESELPEEDGHQWRKYGQKKILHTDFPRNYYRCTHKHDQGCKATKQVQRIQEDPPLHKTTYSGHHTCRILQNPEIMVDYPTDHSSVFLSFDNSFPTPAKQDCPFLSVKKEECKEEVVHPPPPSNDYLSGLTFDDPEKDVTLSSTLDSHDHLGVHISDIMYDDVLNWPLS