Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88115.t1 | XP_024638176.1 | 84.4 | 379 | 24 | 1 | 1 | 344 | 370 | 748 | 2.00E-158 | 568.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88115.t1 | F4IP69 | 52.4 | 389 | 138 | 5 | 1 | 344 | 452 | 838 | 1.0e-94 | 348.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88115.t1 | G7JCN0 | 84.4 | 379 | 24 | 1 | 1 | 344 | 482 | 860 | 1.5e-158 | 568.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051744 | MS.gene88115 | 0.811063 | 8.44E-51 | -1.69E-46 |
| MS.gene052516 | MS.gene88115 | 0.815122 | 1.09E-51 | -1.69E-46 |
| MS.gene052611 | MS.gene88115 | 0.804908 | 1.72E-49 | -1.69E-46 |
| MS.gene052863 | MS.gene88115 | 0.818839 | 1.59E-52 | -1.69E-46 |
| MS.gene053144 | MS.gene88115 | 0.803239 | 3.83E-49 | -1.69E-46 |
| MS.gene053226 | MS.gene88115 | 0.812748 | 3.63E-51 | -1.69E-46 |
| MS.gene054236 | MS.gene88115 | 0.823289 | 1.50E-53 | -1.69E-46 |
| MS.gene054651 | MS.gene88115 | 0.824378 | 8.34E-54 | -1.69E-46 |
| MS.gene055466 | MS.gene88115 | 0.822751 | 2.00E-53 | -1.69E-46 |
| MS.gene057915 | MS.gene88115 | 0.801205 | 1.00E-48 | -1.69E-46 |
| MS.gene058010 | MS.gene88115 | 0.800551 | 1.37E-48 | -1.69E-46 |
| MS.gene058625 | MS.gene88115 | 0.808904 | 2.46E-50 | -1.69E-46 |
| MS.gene059842 | MS.gene88115 | 0.801391 | 9.21E-49 | -1.69E-46 |
| MS.gene060312 | MS.gene88115 | 0.809877 | 1.52E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88115.t1 | MTR_4g080110 | 88.391 | 379 | 9 | 1 | 1 | 344 | 482 | 860 | 0.0 | 616 |
| MS.gene88115.t1 | MTR_4g080110 | 87.021 | 339 | 9 | 1 | 1 | 304 | 482 | 820 | 0.0 | 570 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88115.t1 | AT2G42700 | 55.412 | 388 | 128 | 5 | 1 | 344 | 394 | 780 | 6.11e-135 | 402 |
| MS.gene88115.t1 | AT2G42700 | 55.412 | 388 | 128 | 5 | 1 | 344 | 452 | 838 | 2.75e-134 | 402 |
| MS.gene88115.t1 | AT2G42700 | 51.559 | 417 | 128 | 6 | 1 | 344 | 452 | 867 | 2.28e-128 | 388 |
Find 80 sgRNAs with CRISPR-Local
Find 125 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATGATCATTGGATATATTT+TGG | 0.185317 | 4.2:-73009892 | MS.gene88115:CDS |
| CTTATAAACCAATCCCTTTC+CGG | 0.228005 | 4.2:+73009438 | None:intergenic |
| CGTGGATTTGGAAGACTTCT+TGG | 0.236769 | 4.2:-73009337 | MS.gene88115:CDS |
| CGCATTATTAATCGTGGATT+TGG | 0.244667 | 4.2:-73009349 | MS.gene88115:CDS |
| TGCTGATCAAAATGTCATTT+TGG | 0.250911 | 4.2:-73009169 | MS.gene88115:CDS |
| TTGGGATCACACATAAATAA+AGG | 0.293611 | 4.2:-73009966 | MS.gene88115:CDS |
| ATAATGTGGCTGACGCTAAT+AGG | 0.296344 | 4.2:+73010123 | None:intergenic |
| ACACATAAATAAAGGGAAAA+AGG | 0.296465 | 4.2:-73009958 | MS.gene88115:CDS |
| CGGAAAGGGATTGGTTTATA+AGG | 0.334422 | 4.2:-73009437 | MS.gene88115:CDS |
| CAAAGTCTTGCCGCTCAAAT+TGG | 0.342456 | 4.2:-73010014 | MS.gene88115:CDS |
| TAAAGTTGGAGTTGCGTGAT+AGG | 0.353789 | 4.2:-73009573 | MS.gene88115:CDS |
| CTGGGCAAGTACGATGTGCC+TGG | 0.363010 | 4.2:-73009400 | MS.gene88115:CDS |
| GCTTTGCTGTTAATGATCAT+TGG | 0.369744 | 4.2:-73009903 | MS.gene88115:CDS |
| AGGAATCAGATTGCACCAAA+TGG | 0.398223 | 4.2:-73010091 | MS.gene88115:CDS |
| CGATGATCAGTGGGGCAAAT+GGG | 0.417050 | 4.2:-73009653 | MS.gene88115:CDS |
| GTAAATCTAAAGTTTCTAGA+TGG | 0.426555 | 4.2:-73009757 | MS.gene88115:CDS |
| TGTTCCTTAGCAAAGATGAT+TGG | 0.427202 | 4.2:+73010156 | None:intergenic |
| ACGATGATCAGTGGGGCAAA+TGG | 0.432670 | 4.2:-73009654 | MS.gene88115:CDS |
| GACATACTCGATTTACTACT+AGG | 0.434265 | 4.2:-73008812 | MS.gene88115:CDS |
| TAGCAAAGATGATTGGCTCT+TGG | 0.441818 | 4.2:+73010163 | None:intergenic |
| GAACCATAATCACCTGACTA+TGG | 0.444374 | 4.2:+73009314 | None:intergenic |
| AAGACTTCTTGGCCATAGTC+AGG | 0.452598 | 4.2:-73009326 | MS.gene88115:intron |
| CCTGATATAGAGTTACTTGT+TGG | 0.454298 | 4.2:-73008860 | MS.gene88115:CDS |
| CCAACAAGTAACTCTATATC+AGG | 0.457309 | 4.2:+73008860 | None:intergenic |
| TGCCTATGCCGGAAAGGGAT+TGG | 0.459495 | 4.2:-73009446 | MS.gene88115:CDS |
| CATAAATCAGAGTGCTCTGT+TGG | 0.462189 | 4.2:-73009985 | MS.gene88115:CDS |
| ACTGCTAAATGCATCCCATT+TGG | 0.473230 | 4.2:+73010076 | None:intergenic |
| AGAGGAAGCTACCGAAGAGC+TGG | 0.474067 | 4.2:-73009692 | MS.gene88115:CDS |
| ATCATCAATCTCCAGCTCTT+CGG | 0.478313 | 4.2:+73009681 | None:intergenic |
| TGGGATCACACATAAATAAA+GGG | 0.479287 | 4.2:-73009965 | MS.gene88115:CDS |
| TAAGGTATTAGCAAGGGTGC+TGG | 0.480645 | 4.2:-73009419 | MS.gene88115:CDS |
| TTGAGCGGCAAGACTTTGAC+TGG | 0.487236 | 4.2:+73010019 | None:intergenic |
| GGAATCAGATTGCACCAAAT+GGG | 0.504900 | 4.2:-73010090 | MS.gene88115:CDS |
| CTAGGTGCGTCAAGCAAGGC+AGG | 0.505115 | 4.2:-73008903 | MS.gene88115:intron |
| TGGTGACATGCAACTAAAGT+TGG | 0.506816 | 4.2:-73009587 | MS.gene88115:CDS |
| GAAGATGCCTATGCCGGAAA+GGG | 0.513122 | 4.2:-73009451 | MS.gene88115:CDS |
| GATATAGAGTTACTTGTTGG+TGG | 0.514072 | 4.2:-73008857 | MS.gene88115:CDS |
| GGCTACAAGAAGCTATGCGC+AGG | 0.518100 | 4.2:-73010265 | None:intergenic |
| ATAAATCAGAGTGCTCTGTT+GGG | 0.520222 | 4.2:-73009984 | MS.gene88115:CDS |
| TGGTGCAATCTGATTCCTCA+AGG | 0.520506 | 4.2:+73010096 | None:intergenic |
| AAAACTCTGAGCGTAAGCTC+TGG | 0.521670 | 4.2:-73010047 | MS.gene88115:CDS |
| TTTGATGAAGATGCCTATGC+CGG | 0.524421 | 4.2:-73009457 | MS.gene88115:CDS |
| GAATATCATTCTTCCACTGT+GGG | 0.526024 | 4.2:-73009373 | MS.gene88115:CDS |
| AGTAAATCGAGTATGTCATC+AGG | 0.530370 | 4.2:+73008818 | None:intergenic |
| GTCAATGAACCATCCCTCAA+TGG | 0.534394 | 4.2:+73009493 | None:intergenic |
| AACCAATCCCTTTCCGGCAT+AGG | 0.534419 | 4.2:+73009444 | None:intergenic |
| TGGTTTATAAGGTATTAGCA+AGG | 0.534687 | 4.2:-73009426 | MS.gene88115:CDS |
| AAGAAAGAGTCTACCATTGA+GGG | 0.545821 | 4.2:-73009506 | MS.gene88115:CDS |
| GATGGTTCATTGACCGTGGA+AGG | 0.550211 | 4.2:-73009484 | MS.gene88115:CDS |
| GCGTCAAGCAAGGCAGGCAT+TGG | 0.553242 | 4.2:-73008897 | MS.gene88115:CDS |
| ACATACTCGATTTACTACTA+GGG | 0.557665 | 4.2:-73008811 | MS.gene88115:CDS |
| GTTGGAGTTGCGTGATAGGG+TGG | 0.559581 | 4.2:-73009569 | MS.gene88115:CDS |
| AAAGTTGGAGTTGCGTGATA+GGG | 0.562949 | 4.2:-73009572 | MS.gene88115:CDS |
| AAGGTATTAGCAAGGGTGCT+GGG | 0.563585 | 4.2:-73009418 | MS.gene88115:CDS |
| TGAAGATGCCTATGCCGGAA+AGG | 0.565857 | 4.2:-73009452 | MS.gene88115:CDS |
| AAAGAAAGAGTCTACCATTG+AGG | 0.566806 | 4.2:-73009507 | MS.gene88115:CDS |
| TTACCTAGGTGCGTCAAGCA+AGG | 0.577279 | 4.2:-73008907 | MS.gene88115:intron |
| TTCATCAAAACTGCCTTCCA+CGG | 0.577302 | 4.2:+73009471 | None:intergenic |
| TTCCTCAAGGGCTGATAATG+TGG | 0.577356 | 4.2:+73010109 | None:intergenic |
| AGAGCCAATCATCTTTGCTA+AGG | 0.579265 | 4.2:-73010160 | MS.gene88115:CDS |
| GGTTTATAAGGTATTAGCAA+GGG | 0.587394 | 4.2:-73009425 | MS.gene88115:CDS |
| TATGAGATCGCCAATTTGAG+CGG | 0.593438 | 4.2:+73010004 | None:intergenic |
| GTGGGGCGCATTATTAATCG+TGG | 0.594146 | 4.2:-73009355 | MS.gene88115:CDS |
| ATTAATAATGCGCCCCACAG+TGG | 0.599402 | 4.2:+73009360 | None:intergenic |
| TCATCTTTGCTAAGGAACAA+AGG | 0.604133 | 4.2:-73010152 | MS.gene88115:CDS |
| GGTGCAATCTGATTCCTCAA+GGG | 0.607947 | 4.2:+73010097 | None:intergenic |
| GATGATCAGTGGGGCAAATG+GGG | 0.608922 | 4.2:-73009652 | MS.gene88115:CDS |
| GGCAAATGGGGTGATGAAGA+CGG | 0.614768 | 4.2:-73009640 | MS.gene88115:CDS |
| TATTAGCAAGTTAAAATCAG+AGG | 0.617374 | 4.2:-73009710 | MS.gene88115:CDS |
| TGGGCAAGTACGATGTGCCT+GGG | 0.621646 | 4.2:-73009399 | MS.gene88115:CDS |
| GAAGAATGATATTCTAACCC+AGG | 0.636433 | 4.2:+73009382 | None:intergenic |
| AGCCACATTATCAGCCCTTG+AGG | 0.636835 | 4.2:-73010111 | MS.gene88115:CDS |
| AGAATATCATTCTTCCACTG+TGG | 0.644306 | 4.2:-73009374 | MS.gene88115:CDS |
| GAGGGATGGTTCATTGACCG+TGG | 0.645678 | 4.2:-73009488 | MS.gene88115:CDS |
| AAGAGTCTACCATTGAGGGA+TGG | 0.654481 | 4.2:-73009502 | MS.gene88115:CDS |
| GCTACAAGAAGCTATGCGCA+GGG | 0.655269 | 4.2:-73010264 | None:intergenic |
| CATACTCGATTTACTACTAG+GGG | 0.672095 | 4.2:-73008810 | MS.gene88115:CDS |
| AATATCATTCTTCCACTGTG+GGG | 0.691146 | 4.2:-73009372 | MS.gene88115:CDS |
| AGGCAGGCATTGGTTGACAG+CGG | 0.705952 | 4.2:-73008887 | MS.gene88115:CDS |
| ATGGGGTGATGAAGACGGTG+AGG | 0.723975 | 4.2:-73009635 | MS.gene88115:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAAAATGAACAAGTATA+TGG | - | chr4.2:73009437-73009456 | MS.gene88115:CDS | 15.0% |
| !!! | AATGATCATTGGATATATTT+TGG | - | chr4.2:73009152-73009171 | MS.gene88115:CDS | 20.0% |
| !!! | TATATTACTTTTCTTTACCT+AGG | - | chr4.2:73010123-73010142 | MS.gene88115:CDS | 20.0% |
| ! | ACACATAAATAAAGGGAAAA+AGG | - | chr4.2:73009086-73009105 | MS.gene88115:intron | 25.0% |
| ! | TATTAGCAAGTTAAAATCAG+AGG | - | chr4.2:73009334-73009353 | MS.gene88115:CDS | 25.0% |
| ! | TTAGAAAATATTAGCCAAGT+TGG | + | chr4.2:73010007-73010026 | None:intergenic | 25.0% |
| !! | GTAAATCTAAAGTTTCTAGA+TGG | - | chr4.2:73009287-73009306 | MS.gene88115:intron | 25.0% |
| ACATACTCGATTTACTACTA+GGG | - | chr4.2:73010233-73010252 | MS.gene88115:CDS | 30.0% | |
| ATAGACAGTAAGGATAGAAA+AGG | + | chr4.2:73009828-73009847 | None:intergenic | 30.0% | |
| TAGACAGTAAGGATAGAAAA+GGG | + | chr4.2:73009827-73009846 | None:intergenic | 30.0% | |
| TGATCCTTTATTCGCATAAA+GGG | - | chr4.2:73010084-73010103 | MS.gene88115:CDS | 30.0% | |
| TGGGATCACACATAAATAAA+GGG | - | chr4.2:73009079-73009098 | MS.gene88115:intron | 30.0% | |
| TTGATCCTTTATTCGCATAA+AGG | - | chr4.2:73010083-73010102 | MS.gene88115:CDS | 30.0% | |
| TTGGGATCACACATAAATAA+AGG | - | chr4.2:73009078-73009097 | MS.gene88115:intron | 30.0% | |
| ! | GGTTTATAAGGTATTAGCAA+GGG | - | chr4.2:73009619-73009638 | MS.gene88115:CDS | 30.0% |
| ! | TGGTTTATAAGGTATTAGCA+AGG | - | chr4.2:73009618-73009637 | MS.gene88115:CDS | 30.0% |
| !! | TGCTGATCAAAATGTCATTT+TGG | - | chr4.2:73009875-73009894 | MS.gene88115:intron | 30.0% |
| !!! | ATCATTGGATATATTTTGGC+AGG | - | chr4.2:73009156-73009175 | MS.gene88115:CDS | 30.0% |
| AAAGAAAGAGTCTACCATTG+AGG | - | chr4.2:73009537-73009556 | MS.gene88115:CDS | 35.0% | |
| AACCAACTAGTGTTATGTGT+AGG | + | chr4.2:73009980-73009999 | None:intergenic | 35.0% | |
| AAGAAAGAGTCTACCATTGA+GGG | - | chr4.2:73009538-73009557 | MS.gene88115:CDS | 35.0% | |
| AATATCATTCTTCCACTGTG+GGG | - | chr4.2:73009672-73009691 | MS.gene88115:CDS | 35.0% | |
| ACCAACTAGTGTTATGTGTA+GGG | + | chr4.2:73009979-73009998 | None:intergenic | 35.0% | |
| AGAATATCATTCTTCCACTG+TGG | - | chr4.2:73009670-73009689 | MS.gene88115:CDS | 35.0% | |
| AGTAAATCGAGTATGTCATC+AGG | + | chr4.2:73010229-73010248 | None:intergenic | 35.0% | |
| CAGCATTTGTATAGACAGTA+AGG | + | chr4.2:73009838-73009857 | None:intergenic | 35.0% | |
| CATACTCGATTTACTACTAG+GGG | - | chr4.2:73010234-73010253 | MS.gene88115:CDS | 35.0% | |
| CCAACAAGTAACTCTATATC+AGG | + | chr4.2:73010187-73010206 | None:intergenic | 35.0% | |
| CCTGATATAGAGTTACTTGT+TGG | - | chr4.2:73010184-73010203 | MS.gene88115:CDS | 35.0% | |
| CGCATTATTAATCGTGGATT+TGG | - | chr4.2:73009695-73009714 | MS.gene88115:CDS | 35.0% | |
| CTAAATCAAAAGTCCTGCAT+AGG | + | chr4.2:73009761-73009780 | None:intergenic | 35.0% | |
| CTTATAAACCAATCCCTTTC+CGG | + | chr4.2:73009609-73009628 | None:intergenic | 35.0% | |
| GAAGAATGATATTCTAACCC+AGG | + | chr4.2:73009665-73009684 | None:intergenic | 35.0% | |
| GAATATCATTCTTCCACTGT+GGG | - | chr4.2:73009671-73009690 | MS.gene88115:CDS | 35.0% | |
| GACATACTCGATTTACTACT+AGG | - | chr4.2:73010232-73010251 | MS.gene88115:CDS | 35.0% | |
| GTTACCCTTTATGCGAATAA+AGG | + | chr4.2:73010091-73010110 | None:intergenic | 35.0% | |
| TAGGGAAATAGAAAGAAGGA+TGG | + | chr4.2:73009961-73009980 | None:intergenic | 35.0% | |
| TCATCTTTGCTAAGGAACAA+AGG | - | chr4.2:73008892-73008911 | MS.gene88115:CDS | 35.0% | |
| TGTGTAGGGAAATAGAAAGA+AGG | + | chr4.2:73009965-73009984 | None:intergenic | 35.0% | |
| TGTTCCTTAGCAAAGATGAT+TGG | + | chr4.2:73008891-73008910 | None:intergenic | 35.0% | |
| ! | ATAAATCAGAGTGCTCTGTT+GGG | - | chr4.2:73009060-73009079 | MS.gene88115:intron | 35.0% |
| ! | GATATAGAGTTACTTGTTGG+TGG | - | chr4.2:73010187-73010206 | MS.gene88115:CDS | 35.0% |
| ! | TACAGTACAGATGAGTTTTC+AGG | + | chr4.2:73009267-73009286 | None:intergenic | 35.0% |
| !! | ACATTTTGATCAGCAAGACT+TGG | + | chr4.2:73009870-73009889 | None:intergenic | 35.0% |
| !! | ATGATTTTGACGATGATCAG+TGG | - | chr4.2:73009381-73009400 | MS.gene88115:CDS | 35.0% |
| !! | GCTTTGCTGTTAATGATCAT+TGG | - | chr4.2:73009141-73009160 | MS.gene88115:CDS | 35.0% |
| !! | TGATTTTGACGATGATCAGT+GGG | - | chr4.2:73009382-73009401 | MS.gene88115:CDS | 35.0% |
| !!! | GTCATTTTGGTGTTTGTCAT+CGG | - | chr4.2:73009888-73009907 | MS.gene88115:intron | 35.0% |
| !!! | TCATTTTGGTGTTTGTCATC+GGG | - | chr4.2:73009889-73009908 | MS.gene88115:CDS | 35.0% |
| AAAGTTGGAGTTGCGTGATA+GGG | - | chr4.2:73009472-73009491 | MS.gene88115:CDS | 40.0% | |
| ACTGCTAAATGCATCCCATT+TGG | + | chr4.2:73008971-73008990 | None:intergenic | 40.0% | |
| ACTGTCTATACAAATGCTGC+AGG | - | chr4.2:73009839-73009858 | MS.gene88115:intron | 40.0% | |
| AGAGCCAATCATCTTTGCTA+AGG | - | chr4.2:73008884-73008903 | MS.gene88115:CDS | 40.0% | |
| AGGAATCAGATTGCACCAAA+TGG | - | chr4.2:73008953-73008972 | MS.gene88115:intron | 40.0% | |
| AGGGAAAAAGGATATCTCGA+AGG | - | chr4.2:73009098-73009117 | MS.gene88115:intron | 40.0% | |
| ATAATGTGGCTGACGCTAAT+AGG | + | chr4.2:73008924-73008943 | None:intergenic | 40.0% | |
| ATCATCAATCTCCAGCTCTT+CGG | + | chr4.2:73009366-73009385 | None:intergenic | 40.0% | |
| CAAAAGTCCTGCATAGGTTA+AGG | + | chr4.2:73009755-73009774 | None:intergenic | 40.0% | |
| GAACCATAATCACCTGACTA+TGG | + | chr4.2:73009733-73009752 | None:intergenic | 40.0% | |
| GGAAATAGAAAGAAGGATGG+AGG | + | chr4.2:73009958-73009977 | None:intergenic | 40.0% | |
| GGAATCAGATTGCACCAAAT+GGG | - | chr4.2:73008954-73008973 | MS.gene88115:intron | 40.0% | |
| GGGAAAAAGGATATCTCGAA+GGG | - | chr4.2:73009099-73009118 | MS.gene88115:intron | 40.0% | |
| GGTGAAATTCTCAAATGCCT+TGG | - | chr4.2:73009929-73009948 | MS.gene88115:CDS | 40.0% | |
| TAAAGTTGGAGTTGCGTGAT+AGG | - | chr4.2:73009471-73009490 | MS.gene88115:CDS | 40.0% | |
| TATGAGATCGCCAATTTGAG+CGG | + | chr4.2:73009043-73009062 | None:intergenic | 40.0% | |
| TATGGTTCCTTAACCTATGC+AGG | - | chr4.2:73009745-73009764 | MS.gene88115:CDS | 40.0% | |
| TCCCTACACATAACACTAGT+TGG | - | chr4.2:73009975-73009994 | MS.gene88115:CDS | 40.0% | |
| TGGTGACATGCAACTAAAGT+TGG | - | chr4.2:73009457-73009476 | MS.gene88115:CDS | 40.0% | |
| TTCATCAAAACTGCCTTCCA+CGG | + | chr4.2:73009576-73009595 | None:intergenic | 40.0% | |
| TTTGATGAAGATGCCTATGC+CGG | - | chr4.2:73009587-73009606 | MS.gene88115:CDS | 40.0% | |
| ! | CATAAATCAGAGTGCTCTGT+TGG | - | chr4.2:73009059-73009078 | MS.gene88115:intron | 40.0% |
| ! | CTAGTTGGTTTCTACCAACT+TGG | - | chr4.2:73009990-73010009 | MS.gene88115:CDS | 40.0% |
| ! | TAGCAAAGATGATTGGCTCT+TGG | + | chr4.2:73008884-73008903 | None:intergenic | 40.0% |
| !! | CGGAAAGGGATTGGTTTATA+AGG | - | chr4.2:73009607-73009626 | MS.gene88115:CDS | 40.0% |
| !! | GATTTTGACGATGATCAGTG+GGG | - | chr4.2:73009383-73009402 | MS.gene88115:CDS | 40.0% |
| !! | TTCAGGAAGAGCATCAACAA+CGG | + | chr4.2:73009250-73009269 | None:intergenic | 40.0% |
| !! | TTTGTCATCGGGGGTATTAA+TGG | - | chr4.2:73009900-73009919 | MS.gene88115:CDS | 40.0% |
| !!! | ATTTTGGTGTTTGTCATCGG+GGG | - | chr4.2:73009891-73009910 | MS.gene88115:CDS | 40.0% |
| !!! | CATTTTGGTGTTTGTCATCG+GGG | - | chr4.2:73009890-73009909 | MS.gene88115:CDS | 40.0% |
| AAAACTCTGAGCGTAAGCTC+TGG | - | chr4.2:73008997-73009016 | MS.gene88115:intron | 45.0% | |
| AAGACTTCTTGGCCATAGTC+AGG | - | chr4.2:73009718-73009737 | MS.gene88115:CDS | 45.0% | |
| AAGAGTCTACCATTGAGGGA+TGG | - | chr4.2:73009542-73009561 | MS.gene88115:CDS | 45.0% | |
| ATTAATAATGCGCCCCACAG+TGG | + | chr4.2:73009687-73009706 | None:intergenic | 45.0% | |
| CAAAGTCTTGCCGCTCAAAT+TGG | - | chr4.2:73009030-73009049 | MS.gene88115:intron | 45.0% | |
| CGTGGATTTGGAAGACTTCT+TGG | - | chr4.2:73009707-73009726 | MS.gene88115:CDS | 45.0% | |
| CGTTCCTCTTGCCAAGAAAA+TGG | + | chr4.2:73009213-73009232 | None:intergenic | 45.0% | |
| GGTGCAATCTGATTCCTCAA+GGG | + | chr4.2:73008950-73008969 | None:intergenic | 45.0% | |
| GTCAATGAACCATCCCTCAA+TGG | + | chr4.2:73009554-73009573 | None:intergenic | 45.0% | |
| TGGCCATAGTCAGGTGATTA+TGG | - | chr4.2:73009727-73009746 | MS.gene88115:CDS | 45.0% | |
| TGGTGCAATCTGATTCCTCA+AGG | + | chr4.2:73008951-73008970 | None:intergenic | 45.0% | |
| ! | GGTCAGAATTTTCCAACAGC+TGG | - | chr4.2:73009177-73009196 | MS.gene88115:CDS | 45.0% |
| ! | TAAGGTATTAGCAAGGGTGC+TGG | - | chr4.2:73009625-73009644 | MS.gene88115:CDS | 45.0% |
| ! | TTCCTCAAGGGCTGATAATG+TGG | + | chr4.2:73008938-73008957 | None:intergenic | 45.0% |
| !! | AAGGTATTAGCAAGGGTGCT+GGG | - | chr4.2:73009626-73009645 | MS.gene88115:CDS | 45.0% |
| !! | GTTCTGATGGGCCATTTTCT+TGG | - | chr4.2:73009199-73009218 | MS.gene88115:intron | 45.0% |
| !! | TTCCAACAGCTGGTTCTGAT+GGG | - | chr4.2:73009187-73009206 | MS.gene88115:intron | 45.0% |
| !! | TTTCCAACAGCTGGTTCTGA+TGG | - | chr4.2:73009186-73009205 | MS.gene88115:CDS | 45.0% |
| !!! | ATTATCATATTTTTTAAAAA+TGG | + | chr4.2:73009788-73009807 | None:intergenic | 5.0% |
| AACCAATCCCTTTCCGGCAT+AGG | + | chr4.2:73009603-73009622 | None:intergenic | 50.0% | |
| AAGAAGGATGGAGGAGACCA+AGG | + | chr4.2:73009949-73009968 | None:intergenic | 50.0% | |
| ACGATGATCAGTGGGGCAAA+TGG | - | chr4.2:73009390-73009409 | MS.gene88115:CDS | 50.0% | |
| AGCCACATTATCAGCCCTTG+AGG | - | chr4.2:73008933-73008952 | MS.gene88115:intron | 50.0% | |
| CGATGATCAGTGGGGCAAAT+GGG | - | chr4.2:73009391-73009410 | MS.gene88115:CDS | 50.0% | |
| GAAGATGCCTATGCCGGAAA+GGG | - | chr4.2:73009593-73009612 | MS.gene88115:CDS | 50.0% | |
| GATGATCAGTGGGGCAAATG+GGG | - | chr4.2:73009392-73009411 | MS.gene88115:CDS | 50.0% | |
| GATGGTTCATTGACCGTGGA+AGG | - | chr4.2:73009560-73009579 | MS.gene88115:CDS | 50.0% | |
| GGCAAATGGGGTGATGAAGA+CGG | - | chr4.2:73009404-73009423 | MS.gene88115:CDS | 50.0% | |
| GTGGGGCGCATTATTAATCG+TGG | - | chr4.2:73009689-73009708 | MS.gene88115:CDS | 50.0% | |
| TGAAGATGCCTATGCCGGAA+AGG | - | chr4.2:73009592-73009611 | MS.gene88115:CDS | 50.0% | |
| TTACCTAGGTGCGTCAAGCA+AGG | - | chr4.2:73010137-73010156 | MS.gene88115:CDS | 50.0% | |
| TTGAGCGGCAAGACTTTGAC+TGG | + | chr4.2:73009028-73009047 | None:intergenic | 50.0% | |
| !! | CGGGGGTATTAATGGACTAG+AGG | - | chr4.2:73009908-73009927 | MS.gene88115:CDS | 50.0% |
| !! | TGGGCCATTTTCTTGGCAAG+AGG | - | chr4.2:73009206-73009225 | MS.gene88115:intron | 50.0% |
| AGAGGAAGCTACCGAAGAGC+TGG | - | chr4.2:73009352-73009371 | MS.gene88115:CDS | 55.0% | |
| ATGGGGTGATGAAGACGGTG+AGG | - | chr4.2:73009409-73009428 | MS.gene88115:CDS | 55.0% | |
| GAGGGATGGTTCATTGACCG+TGG | - | chr4.2:73009556-73009575 | MS.gene88115:CDS | 55.0% | |
| GTTGGAGTTGCGTGATAGGG+TGG | - | chr4.2:73009475-73009494 | MS.gene88115:CDS | 55.0% | |
| TGCCTATGCCGGAAAGGGAT+TGG | - | chr4.2:73009598-73009617 | MS.gene88115:CDS | 55.0% | |
| TGGGCAAGTACGATGTGCCT+GGG | - | chr4.2:73009645-73009664 | MS.gene88115:CDS | 55.0% | |
| !! | AGGCAGGCATTGGTTGACAG+CGG | - | chr4.2:73010157-73010176 | MS.gene88115:CDS | 55.0% |
| CTAGGTGCGTCAAGCAAGGC+AGG | - | chr4.2:73010141-73010160 | MS.gene88115:CDS | 60.0% | |
| CTGCCTTGCTTGACGCACCT+AGG | + | chr4.2:73010143-73010162 | None:intergenic | 60.0% | |
| CTGGGCAAGTACGATGTGCC+TGG | - | chr4.2:73009644-73009663 | MS.gene88115:CDS | 60.0% | |
| GCGTCAAGCAAGGCAGGCAT+TGG | - | chr4.2:73010147-73010166 | MS.gene88115:CDS | 60.0% | |
| GGCCCATCAGAACCAGCTGT+TGG | + | chr4.2:73009192-73009211 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 73008793 | 73010273 | 73008793 | ID=MS.gene88115 |
| chr4.2 | mRNA | 73008793 | 73010273 | 73008793 | ID=MS.gene88115.t1;Parent=MS.gene88115 |
| chr4.2 | exon | 73009889 | 73010273 | 73009889 | ID=MS.gene88115.t1.exon1;Parent=MS.gene88115.t1 |
| chr4.2 | CDS | 73009889 | 73010273 | 73009889 | ID=cds.MS.gene88115.t1;Parent=MS.gene88115.t1 |
| chr4.2 | exon | 73009327 | 73009778 | 73009327 | ID=MS.gene88115.t1.exon2;Parent=MS.gene88115.t1 |
| chr4.2 | CDS | 73009327 | 73009778 | 73009327 | ID=cds.MS.gene88115.t1;Parent=MS.gene88115.t1 |
| chr4.2 | exon | 73009137 | 73009205 | 73009137 | ID=MS.gene88115.t1.exon3;Parent=MS.gene88115.t1 |
| chr4.2 | CDS | 73009137 | 73009205 | 73009137 | ID=cds.MS.gene88115.t1;Parent=MS.gene88115.t1 |
| chr4.2 | exon | 73008793 | 73008921 | 73008793 | ID=MS.gene88115.t1.exon4;Parent=MS.gene88115.t1 |
| chr4.2 | CDS | 73008793 | 73008921 | 73008793 | ID=cds.MS.gene88115.t1;Parent=MS.gene88115.t1 |
| Gene Sequence |
| Protein sequence |
