AlfalfaGEDB | MS.gene88115

M. sativa cultivar XinJiangDaYe / MS.gene88115

KEGG: -
GO: GO:0006810 GO:0006904 GO:0008150 GO:0009987 GO:0016192 GO:0022406 GO:0048278 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0140029 GO:0140056
PFAM: PF00995.26

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene88115.t1	XP_024638176.1	84.4	379	24	1	1	344	370	748	2.00E-158	568.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene88115.t1	F4IP69	52.4	389	138	5	1	344	452	838	1.0e-94	348.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene88115.t1	G7JCN0	84.4	379	24	1	1	344	482	860	1.5e-158	568.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene051744	MS.gene88115	0.811063	8.44E-51	-1.69E-46
MS.gene052516	MS.gene88115	0.815122	1.09E-51	-1.69E-46
MS.gene052611	MS.gene88115	0.804908	1.72E-49	-1.69E-46
MS.gene052863	MS.gene88115	0.818839	1.59E-52	-1.69E-46
MS.gene053144	MS.gene88115	0.803239	3.83E-49	-1.69E-46
MS.gene053226	MS.gene88115	0.812748	3.63E-51	-1.69E-46
MS.gene054236	MS.gene88115	0.823289	1.50E-53	-1.69E-46
MS.gene054651	MS.gene88115	0.824378	8.34E-54	-1.69E-46
MS.gene055466	MS.gene88115	0.822751	2.00E-53	-1.69E-46
MS.gene057915	MS.gene88115	0.801205	1.00E-48	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene88115.t1	MTR_4g080110	88.391	379	9	1	1	344	482	860	0.0	616
MS.gene88115.t1	MTR_4g080110	87.021	339	9	1	1	304	482	820	0.0	570

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene88115.t1	AT2G42700	55.412	388	128	5	1	344	394	780	6.11e-135	402
MS.gene88115.t1	AT2G42700	55.412	388	128	5	1	344	452	838	2.75e-134	402
MS.gene88115.t1	AT2G42700	51.559	417	128	6	1	344	452	867	2.28e-128	388

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Find 80 sgRNAs with CRISPR-Local

Find 125 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTCTGAGCGTAAGCTC+TGG	0.521670	4.2:-73010047	MS.gene88115:CDS
AAAGAAAGAGTCTACCATTG+AGG	0.566806	4.2:-73009507	MS.gene88115:CDS
AAAGTTGGAGTTGCGTGATA+GGG	0.562949	4.2:-73009572	MS.gene88115:CDS
AACCAATCCCTTTCCGGCAT+AGG	0.534419	4.2:+73009444	None:intergenic
AAGAAAGAGTCTACCATTGA+GGG	0.545821	4.2:-73009506	MS.gene88115:CDS
AAGACTTCTTGGCCATAGTC+AGG	0.452598	4.2:-73009326	MS.gene88115:intron
AAGAGTCTACCATTGAGGGA+TGG	0.654481	4.2:-73009502	MS.gene88115:CDS
AAGGTATTAGCAAGGGTGCT+GGG	0.563585	4.2:-73009418	MS.gene88115:CDS
AATATCATTCTTCCACTGTG+GGG	0.691146	4.2:-73009372	MS.gene88115:CDS
AATGATCATTGGATATATTT+TGG	0.185317	4.2:-73009892	MS.gene88115:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACATACTCGATTTACTACTA+GGG	-	chr4.2:73010233-73010252	MS.gene88115:CDS	30.0%
ATAGACAGTAAGGATAGAAA+AGG	+	chr4.2:73009828-73009847	None:intergenic	30.0%
TAGACAGTAAGGATAGAAAA+GGG	+	chr4.2:73009827-73009846	None:intergenic	30.0%
TGATCCTTTATTCGCATAAA+GGG	-	chr4.2:73010084-73010103	MS.gene88115:CDS	30.0%
TGGGATCACACATAAATAAA+GGG	-	chr4.2:73009079-73009098	MS.gene88115:intron	30.0%
TTGATCCTTTATTCGCATAA+AGG	-	chr4.2:73010083-73010102	MS.gene88115:CDS	30.0%
TTGGGATCACACATAAATAA+AGG	-	chr4.2:73009078-73009097	MS.gene88115:intron	30.0%
AAAGAAAGAGTCTACCATTG+AGG	-	chr4.2:73009537-73009556	MS.gene88115:CDS	35.0%
AACCAACTAGTGTTATGTGT+AGG	+	chr4.2:73009980-73009999	None:intergenic	35.0%
AAGAAAGAGTCTACCATTGA+GGG	-	chr4.2:73009538-73009557	MS.gene88115:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.2	gene	73008793	73010273	73008793	ID=MS.gene88115
chr4.2	mRNA	73008793	73010273	73008793	ID=MS.gene88115.t1;Parent=MS.gene88115
chr4.2	exon	73009889	73010273	73009889	ID=MS.gene88115.t1.exon1;Parent=MS.gene88115.t1
chr4.2	CDS	73009889	73010273	73009889	ID=cds.MS.gene88115.t1;Parent=MS.gene88115.t1
chr4.2	exon	73009327	73009778	73009327	ID=MS.gene88115.t1.exon2;Parent=MS.gene88115.t1
chr4.2	CDS	73009327	73009778	73009327	ID=cds.MS.gene88115.t1;Parent=MS.gene88115.t1
chr4.2	exon	73009137	73009205	73009137	ID=MS.gene88115.t1.exon3;Parent=MS.gene88115.t1
chr4.2	CDS	73009137	73009205	73009137	ID=cds.MS.gene88115.t1;Parent=MS.gene88115.t1
chr4.2	exon	73008793	73008921	73008793	ID=MS.gene88115.t1.exon4;Parent=MS.gene88115.t1
chr4.2	CDS	73008793	73008921	73008793	ID=cds.MS.gene88115.t1;Parent=MS.gene88115.t1

Gene Sequence

>MS.gene88115

ATGCGCAGGGAAAATGTTACTGTGAATGTGAAATCTCGTTCTTCTGTTGTTACAACTCTTGAGTTGCAAGCTATGATCAAAGCATTGTCCAAGAGCCAATCATCTTTGCTAAGGAACAAAGGAATTATCCTATTAGCGTCAGCCACATTATCAGCCCTTGAGGAATCAGATTGCACCAAATGGGATGCATTTAGCAGTGCAGTGAAAACTCTGAGCGTAAGCTCTGGAGAAACCAGTCAAAGTCTTGCCGCTCAAATTGGCGATCTCATAAATCAGAGTGCTCTGTTGGGATCACACATAAATAAAGGGAAAAAGGATATCTCGAAGGGTTTGATTTCTTTGCAAGATGCTTTGCTGTTAATGATCATTGGATATATTTTGGCAGGTCAGAATTTTCCAACAGCTGGTTCTGATGGGCCATTTTCTTGGCAAGAGGAACGTCTGTTGAAAGAAGCCGTTGTTGATGCTCTTCCTGAAAACTCATCTGTACTGTAGTAAATCTAAAGTTTCTAGATGGACTAAAGAAAGAGCTTGAAGCTAATATTAGCAAGTTAAAATCAGAGGAAGCTACCGAAGAGCTGGAGATTGATGATTTTGACGATGATCAGTGGGGCAAATGGGGTGATGAAGACGGTGAGGATGATAATAAAAATGAACAAGTATATGGTGACATGCAACTAAAGTTGGAGTTGCGTGATAGGGTGGATAACTTTTTCAAATTTCTTCATAAGTTCTCTAATTTGAAAAGAAAGAGTCTACCATTGAGGGATGGTTCATTGACCGTGGAAGGCAGTTTTGATGAAGATGCCTATGCCGGAAAGGGATTGGTTTATAAGGTATTAGCAAGGGTGCTGGGCAAGTACGATGTGCCTGGGTTAGAATATCATTCTTCCACTGTGGGGCGCATTATTAATCGTGGATTTGGAAGACTTCTTGGCCATAGTCAGGTGATTATGGTTCCTTAACCTATGCAGGACTTTTGATTTAGTCATCCATTTTTAAAAAATATGATAATCACTGTTTTTCTCTCTCCCTTTTCTATCCTTACTGTCTATACAAATGCTGCAGGCTAAACCAAGTCTTGCTGATCAAAATGTCATTTTGGTGTTTGTCATCGGGGGTATTAATGGACTAGAGGTGAAATTCTCAAATGCCTTGGTCTCCTCCATCCTTCTTTCTATTTCCCTACACATAACACTAGTTGGTTTCTACCAACTTGGCTAATATTTTCTAAAAGATGACATTGATTGTGTGTTTTCGCTATATATTCAAATTTGTTTAGAATAAAACTTGATCCTTTATTCGCATAAAGGGTAACATAAGACAATTTTATATTACTTTTCTTTACCTAGGTGCGTCAAGCAAGGCAGGCATTGGTTGACAGCGGAAGACCTGATATAGAGTTACTTGTTGGTGGAACAACTCTTCTTACTCCTGATGACATACTCGATTTACTACTAGGGGACTCGAGTTACTTTTAA

Protein sequence

>MS.gene88115.t1

MRRENVTVNVKSRSSVVTTLELQAMIKALSKSQSSLLRNKGIILLASATLSALEESDCTKWDAFSSAVKTLSVSSGETSQSLAAQIGDLINQSALLGSHINKGKKDISKGLISLQDALLLMIIGYILAVNLKFLDGLKKELEANISKLKSEEATEELEIDDFDDDQWGKWGDEDGEDDNKNEQVYGDMQLKLELRDRVDNFFKFLHKFSNLKRKSLPLRDGSLTVEGSFDEDAYAGKGLVYKVLARVLGKYDVPGLEYHSSTVGRIINRGFGRLLGHSQAKPSLADQNVILVFVIGGINGLEVRQARQALVDSGRPDIELLVGGTTLLTPDDILDLLLGDSSYF