Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88450.t1 | RHN40328.1 | 98.4 | 1102 | 18 | 0 | 1 | 1102 | 1 | 1102 | 0.00E+00 | 2053.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88450.t1 | Q8RX56 | 69.9 | 1107 | 318 | 10 | 1 | 1100 | 1 | 1099 | 0.0e+00 | 1480.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88450.t1 | A0A396GIY6 | 98.4 | 1102 | 18 | 0 | 1 | 1102 | 1 | 1102 | 0.0e+00 | 2053.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene88450 | 0.801561 | 8.50E-49 | -1.69E-46 |
| MS.gene049887 | MS.gene88450 | 0.805255 | 1.46E-49 | -1.69E-46 |
| MS.gene050439 | MS.gene88450 | 0.82083 | 5.58E-53 | -1.69E-46 |
| MS.gene051102 | MS.gene88450 | 0.822447 | 2.36E-53 | -1.69E-46 |
| MS.gene052307 | MS.gene88450 | 0.815115 | 1.09E-51 | -1.69E-46 |
| MS.gene052609 | MS.gene88450 | 0.829214 | 5.83E-55 | -1.69E-46 |
| MS.gene054824 | MS.gene88450 | 0.802919 | 4.46E-49 | -1.69E-46 |
| MS.gene055313 | MS.gene88450 | 0.809265 | 2.06E-50 | -1.69E-46 |
| MS.gene055469 | MS.gene88450 | 0.804752 | 1.86E-49 | -1.69E-46 |
| MS.gene058639 | MS.gene88450 | 0.805013 | 1.64E-49 | -1.69E-46 |
| MS.gene058758 | MS.gene88450 | 0.815957 | 7.08E-52 | -1.69E-46 |
| MS.gene059171 | MS.gene88450 | 0.828199 | 1.03E-54 | -1.69E-46 |
| MS.gene059713 | MS.gene88450 | 0.82535 | 4.92E-54 | -1.69E-46 |
| MS.gene060380 | MS.gene88450 | 0.819202 | 1.31E-52 | -1.69E-46 |
| MS.gene061006 | MS.gene88450 | 0.806861 | 6.70E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88450.t1 | MTR_8g040190 | 98.820 | 1102 | 13 | 0 | 1 | 1102 | 1 | 1102 | 0.0 | 2223 |
| MS.gene88450.t1 | MTR_3g109630 | 31.558 | 995 | 571 | 22 | 181 | 1099 | 36 | 996 | 1.15e-142 | 455 |
| MS.gene88450.t1 | MTR_1g114270 | 31.362 | 947 | 570 | 22 | 189 | 1098 | 16 | 919 | 4.17e-127 | 411 |
| MS.gene88450.t1 | MTR_1g044480 | 29.730 | 888 | 550 | 19 | 261 | 1099 | 170 | 1032 | 6.21e-114 | 379 |
| MS.gene88450.t1 | MTR_1g073760 | 28.060 | 1005 | 602 | 23 | 190 | 1099 | 36 | 1014 | 9.06e-112 | 372 |
| MS.gene88450.t1 | MTR_6g043090 | 27.878 | 886 | 572 | 21 | 256 | 1099 | 285 | 1145 | 3.76e-98 | 337 |
| MS.gene88450.t1 | MTR_1g114190 | 23.900 | 682 | 377 | 20 | 291 | 959 | 810 | 1362 | 4.28e-35 | 146 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88450.t1 | AT5G06970 | 70.334 | 1109 | 310 | 11 | 1 | 1100 | 1 | 1099 | 0.0 | 1478 |
| MS.gene88450.t1 | AT4G11670 | 33.304 | 1123 | 677 | 20 | 9 | 1101 | 4 | 1084 | 1.03e-180 | 559 |
| MS.gene88450.t1 | AT4G11670 | 32.919 | 1127 | 671 | 20 | 9 | 1101 | 4 | 1079 | 3.45e-176 | 547 |
| MS.gene88450.t1 | AT4G11670 | 32.294 | 1155 | 678 | 21 | 9 | 1101 | 4 | 1116 | 2.78e-174 | 543 |
| MS.gene88450.t1 | AT4G11670 | 32.305 | 1167 | 674 | 22 | 9 | 1101 | 4 | 1128 | 5.53e-174 | 543 |
| MS.gene88450.t1 | AT2G25800 | 30.746 | 992 | 564 | 27 | 188 | 1099 | 37 | 985 | 8.58e-132 | 426 |
| MS.gene88450.t1 | AT2G20010 | 30.967 | 972 | 580 | 19 | 190 | 1099 | 7 | 949 | 2.74e-130 | 421 |
| MS.gene88450.t1 | AT2G20010 | 31.512 | 860 | 533 | 15 | 267 | 1099 | 1 | 831 | 3.21e-123 | 398 |
| MS.gene88450.t1 | AT2G33420 | 30.282 | 885 | 545 | 20 | 261 | 1099 | 179 | 1037 | 1.04e-119 | 394 |
| MS.gene88450.t1 | AT1G04470 | 29.505 | 888 | 546 | 19 | 261 | 1099 | 177 | 1033 | 6.33e-113 | 376 |
Find 251 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATTAGTTCACAAACTTTA+TGG | 0.122588 | 8.3:+57672127 | MS.gene88450:CDS |
| CTTATAGGGTTCAGCAATTA+TGG | 0.183898 | 8.3:+57671199 | MS.gene88450:intron |
| TTATATAAACCCAGTGTTTC+AGG | 0.191950 | 8.3:+57677011 | MS.gene88450:CDS |
| CATAAAGTCTGACATTAAAT+TGG | 0.220443 | 8.3:-57668471 | None:intergenic |
| ACGAGATATGTCTTTCTTAC+AGG | 0.226698 | 8.3:+57670349 | MS.gene88450:CDS |
| AATCACCCTGTGGTTGGATT+TGG | 0.238923 | 8.3:+57667854 | MS.gene88450:CDS |
| GTCAATGCAGCTAAAAGTTT+TGG | 0.255972 | 8.3:+57667817 | MS.gene88450:intron |
| ATCACCCTGTGGTTGGATTT+GGG | 0.258817 | 8.3:+57667855 | MS.gene88450:CDS |
| CTGTAGGAATTCTTTATATC+TGG | 0.262965 | 8.3:+57678696 | MS.gene88450:intron |
| GATCAGTCATTTGAATAAAT+TGG | 0.275299 | 8.3:+57675968 | MS.gene88450:CDS |
| GAAAAGGATGGATACTCTTT+TGG | 0.282896 | 8.3:+57667586 | MS.gene88450:CDS |
| TTATATAAGTTGTCGATAAA+AGG | 0.287570 | 8.3:-57676996 | None:intergenic |
| ATCTGATCACGATCGCTAAT+TGG | 0.292380 | 8.3:-57671411 | None:intergenic |
| CAGAATGCTTGAGGTCTCTA+AGG | 0.304013 | 8.3:+57668371 | MS.gene88450:CDS |
| TGCCGCTGTTGAAGAGATAT+TGG | 0.308586 | 8.3:-57674087 | None:intergenic |
| GTCACTGATCCGGAGTCTTC+AGG | 0.315415 | 8.3:+57665391 | MS.gene88450:CDS |
| ATTGGAGTATGATACCTTTA+GGG | 0.323934 | 8.3:-57677960 | None:intergenic |
| AGAGATTATCATGATCATAC+TGG | 0.327787 | 8.3:+57664661 | MS.gene88450:CDS |
| AAACGAGTTGAGGATTCTTT+TGG | 0.333210 | 8.3:+57667895 | MS.gene88450:CDS |
| ATTAAATAAAATACCATTGA+TGG | 0.345208 | 8.3:+57670265 | MS.gene88450:CDS |
| CAATAACAAACATACCATTT+GGG | 0.345764 | 8.3:-57664689 | None:intergenic |
| TTGAAGGTCTCAGGGCTAAA+AGG | 0.348521 | 8.3:+57665614 | MS.gene88450:CDS |
| ATAGGAGGCACTGCAGAAAT+AGG | 0.352514 | 8.3:-57665445 | None:intergenic |
| AAGCTTGGGCGTAGCAAAAC+TGG | 0.352725 | 8.3:+57666490 | MS.gene88450:CDS |
| TTCAATTCTGTAAACCTCAT+TGG | 0.354808 | 8.3:-57674703 | None:intergenic |
| AAATCAGGTTGCACGCGTTC+GGG | 0.355645 | 8.3:+57678749 | MS.gene88450:CDS |
| TCACATATAAAGTATTTAAC+TGG | 0.356974 | 8.3:-57675587 | None:intergenic |
| ACTTATAGAACCACTTGATA+TGG | 0.370185 | 8.3:+57677049 | MS.gene88450:CDS |
| ATAAATTGGAAGATAGCATT+TGG | 0.371797 | 8.3:+57675982 | MS.gene88450:CDS |
| GTGGTTGGATTTGGGGAATC+AGG | 0.371834 | 8.3:+57667863 | MS.gene88450:CDS |
| AAAATCAGGTTGCACGCGTT+CGG | 0.373952 | 8.3:+57678748 | MS.gene88450:CDS |
| GATAGATGATAAGTCCAAAA+AGG | 0.375003 | 8.3:+57676798 | MS.gene88450:CDS |
| CAAACTTTATGGTGTCAAAC+TGG | 0.381275 | 8.3:+57672138 | MS.gene88450:CDS |
| CTTCCATGGTTGAAGGTCTC+AGG | 0.385462 | 8.3:+57665605 | MS.gene88450:CDS |
| ATATTGTTGTGGAGCCTCTC+AGG | 0.388994 | 8.3:+57677742 | MS.gene88450:CDS |
| TTGGCTTGTGCTGGAGCCAC+AGG | 0.389675 | 8.3:+57666315 | MS.gene88450:CDS |
| CTGGAGGTGATGGGCTTCCT+CGG | 0.391647 | 8.3:+57678715 | MS.gene88450:CDS |
| TGGAGGTGATGGGCTTCCTC+GGG | 0.394488 | 8.3:+57678716 | MS.gene88450:CDS |
| TCGGGGAGTTGTCGAAAATC+AGG | 0.395214 | 8.3:+57678734 | MS.gene88450:CDS |
| TTCCAACAAGCCAACTAATC+CGG | 0.397607 | 8.3:-57666542 | None:intergenic |
| CTATAGATTGAGACAAAATC+TGG | 0.400047 | 8.3:+57672951 | MS.gene88450:intron |
| CAGTCTTCTTCAAGCCTCAT+TGG | 0.400366 | 8.3:+57677779 | MS.gene88450:CDS |
| TTCTTTATATCTGGAGGTGA+TGG | 0.402557 | 8.3:+57678705 | MS.gene88450:CDS |
| ATCTCGTTCACCTTCAACCT+TGG | 0.402762 | 8.3:-57670333 | None:intergenic |
| CCAGCTCGGGGTGACTTAAC+TGG | 0.404193 | 8.3:+57668421 | MS.gene88450:CDS |
| CACCCTAGAGCCTGAAACAC+TGG | 0.413930 | 8.3:-57677021 | None:intergenic |
| GGGAGCGATGGACATATAAA+AGG | 0.415324 | 8.3:+57676003 | MS.gene88450:CDS |
| GAGATCCTCTTGGCTTGTGC+TGG | 0.417826 | 8.3:+57666306 | MS.gene88450:CDS |
| TGCTCTAGACTCTCAGCTGC+TGG | 0.423779 | 8.3:-57672298 | None:intergenic |
| CACAAAGTGTTGGAGTTGTT+AGG | 0.426028 | 8.3:-57675563 | None:intergenic |
| GGATGTCTCTGTTGTAAAAC+AGG | 0.428231 | 8.3:-57672082 | None:intergenic |
| ATACCAAAGTCTTCTGCATA+AGG | 0.433056 | 8.3:+57679519 | MS.gene88450:CDS |
| CAAAATGCTCCCGGATTAGT+TGG | 0.433806 | 8.3:+57666532 | MS.gene88450:CDS |
| CGCTGGGTCAATTCACAGCT+TGG | 0.435853 | 8.3:+57672987 | MS.gene88450:CDS |
| AGCAGCTTGATTAGGAAGCT+TGG | 0.436508 | 8.3:+57666475 | MS.gene88450:CDS |
| TTGTCAGCCCATCTCTGAAT+TGG | 0.438195 | 8.3:-57670383 | None:intergenic |
| AATGCTCTTGTGGGAAAGGC+AGG | 0.442211 | 8.3:+57667563 | MS.gene88450:CDS |
| GATTACCAGGAGGCTTCTAC+TGG | 0.442873 | 8.3:+57671244 | MS.gene88450:CDS |
| TCCCGGATTAGTTGGCTTGT+TGG | 0.448769 | 8.3:+57666540 | MS.gene88450:CDS |
| TTAAGTGCAACCTCTCCTGC+TGG | 0.449224 | 8.3:-57670298 | None:intergenic |
| TTCTGTCCTTTGAAGTTCAC+CGG | 0.450638 | 8.3:-57668353 | None:intergenic |
| GAGTCTAGAGCAGTTTATAA+TGG | 0.451374 | 8.3:+57672309 | MS.gene88450:CDS |
| TTACTGTACCGCGTGAGAAC+AGG | 0.451881 | 8.3:-57675447 | None:intergenic |
| TAAATTGGAAGATAGCATTT+GGG | 0.452772 | 8.3:+57675983 | MS.gene88450:CDS |
| CAATTAAGCATGCATTTACA+AGG | 0.453311 | 8.3:+57671454 | MS.gene88450:CDS |
| AGGCTTCTGAGTCACTTCTA+TGG | 0.453529 | 8.3:-57679470 | None:intergenic |
| CTAGAAATGCAAGGTGGAAA+AGG | 0.458845 | 8.3:+57679405 | MS.gene88450:CDS |
| TGAAGTTCACCGGATGAAGA+TGG | 0.460794 | 8.3:-57668343 | None:intergenic |
| CAGTTTCTCCCATCTTCATC+CGG | 0.463177 | 8.3:+57668334 | MS.gene88450:intron |
| TTTCCTTATGCAGAAGACTT+TGG | 0.466526 | 8.3:-57679522 | None:intergenic |
| TGGCCTCGTTGTTCCATCAA+TGG | 0.469238 | 8.3:-57670278 | None:intergenic |
| CTTCAGGTTCACCTCCCAAA+AGG | 0.470142 | 8.3:+57665407 | MS.gene88450:CDS |
| CTTAACACCAATTCAGAGAT+GGG | 0.471689 | 8.3:+57670376 | MS.gene88450:CDS |
| CCGGGAAAGAAAACTCTTGA+AGG | 0.473163 | 8.3:-57677905 | None:intergenic |
| CAAGGTGGAAAAGGCAAACT+AGG | 0.473872 | 8.3:+57679414 | MS.gene88450:CDS |
| TCACCCTGTGGTTGGATTTG+GGG | 0.478025 | 8.3:+57667856 | MS.gene88450:CDS |
| GAGGCTTCTACTGGAAGAAC+CGG | 0.481409 | 8.3:+57671253 | MS.gene88450:CDS |
| AAAAGTTATAAATGCTGCTA+TGG | 0.481416 | 8.3:+57676840 | MS.gene88450:CDS |
| GCCGCTGTTGAAGAGATATT+GGG | 0.482781 | 8.3:-57674086 | None:intergenic |
| GCAGCTTGATTAGGAAGCTT+GGG | 0.482955 | 8.3:+57666476 | MS.gene88450:CDS |
| ACCGGAGACGTAGGATAAGC+AGG | 0.482987 | 8.3:-57665487 | None:intergenic |
| AAAATTGTTAGAAGAAGATC+TGG | 0.484529 | 8.3:+57677934 | MS.gene88450:CDS |
| ACTCGCGGAGAGACCAGCTC+GGG | 0.485181 | 8.3:+57668408 | MS.gene88450:CDS |
| CTTGATATATTAGAAGCAAC+CGG | 0.487383 | 8.3:-57665505 | None:intergenic |
| TAGCAGTTGCGATGATTACC+AGG | 0.489673 | 8.3:+57671231 | MS.gene88450:CDS |
| AAATAAAACCCATGCATAGC+AGG | 0.489815 | 8.3:-57669320 | None:intergenic |
| TTGTTAGGACGCTAATTTCA+CGG | 0.491196 | 8.3:-57675548 | None:intergenic |
| GGCACTGCAGAAATAGGAAC+AGG | 0.491930 | 8.3:-57665439 | None:intergenic |
| TATACGATGGCAAAAGAGGC+AGG | 0.494620 | 8.3:+57667667 | MS.gene88450:CDS |
| AACTGGTGAAATATGCCATT+GGG | 0.495679 | 8.3:+57668438 | MS.gene88450:CDS |
| TGAGACAAAATCTGGAACCT+TGG | 0.497734 | 8.3:+57672959 | MS.gene88450:CDS |
| TCCAACAAGCCAACTAATCC+GGG | 0.498689 | 8.3:-57666541 | None:intergenic |
| GGTGGAGTGGAAACAGCAAT+AGG | 0.500666 | 8.3:-57665463 | None:intergenic |
| TCATCTAGCGTAACTGCGCC+AGG | 0.502197 | 8.3:-57664472 | None:intergenic |
| CAATTTCCTCAGCAAGATCT+CGG | 0.504218 | 8.3:-57672365 | None:intergenic |
| AAATCTTGTTGTTAATGACT+TGG | 0.504845 | 8.3:+57674768 | MS.gene88450:CDS |
| AAGCTTCCTAATCAAGCTGC+TGG | 0.505731 | 8.3:-57666473 | None:intergenic |
| CCACAACAATATCGCAAAGT+TGG | 0.506570 | 8.3:-57677731 | None:intergenic |
| CTGGTTAATCACCCTGTGGT+TGG | 0.508562 | 8.3:+57667848 | MS.gene88450:CDS |
| TCTTAACACCAATTCAGAGA+TGG | 0.508944 | 8.3:+57670375 | MS.gene88450:CDS |
| TCCTGCTTATCCTACGTCTC+CGG | 0.509250 | 8.3:+57665486 | MS.gene88450:CDS |
| TGTTAGGACGCTAATTTCAC+GGG | 0.510191 | 8.3:-57675547 | None:intergenic |
| TCATACTGGGTTACCCCAAA+TGG | 0.510656 | 8.3:+57664675 | MS.gene88450:CDS |
| TCCATCACACCTGCTATGCA+TGG | 0.510734 | 8.3:+57669311 | MS.gene88450:CDS |
| AGAAGATCTGGAAGCCCTAA+AGG | 0.511754 | 8.3:+57677946 | MS.gene88450:CDS |
| GAAGAATCACCTGTGGAAAA+CGG | 0.512848 | 8.3:-57665676 | None:intergenic |
| ACAGAAGTACACACAGTGTC+CGG | 0.514360 | 8.3:-57671272 | None:intergenic |
| GAAGTTCACCGGATGAAGAT+GGG | 0.518947 | 8.3:-57668342 | None:intergenic |
| GACAATACTTCCATGGTTGA+AGG | 0.519507 | 8.3:+57665598 | MS.gene88450:CDS |
| CTTCATCCGGTGAACTTCAA+AGG | 0.521626 | 8.3:+57668347 | MS.gene88450:CDS |
| GGGTTGCTAAATGCTCTTGT+GGG | 0.521738 | 8.3:+57667554 | MS.gene88450:CDS |
| ACCCAGTGTTTCAGGCTCTA+GGG | 0.522133 | 8.3:+57677019 | MS.gene88450:CDS |
| GATGGAACAACGAGGCCAGC+AGG | 0.522629 | 8.3:+57670283 | MS.gene88450:CDS |
| CGCAGTTACGCTAGATGATG+TGG | 0.522770 | 8.3:+57664477 | MS.gene88450:CDS |
| CTGGAACCTTGGTGTTACGC+TGG | 0.524702 | 8.3:+57672970 | MS.gene88450:CDS |
| AGAAGTTTACAGAATTGTAG+AGG | 0.525601 | 8.3:+57674125 | MS.gene88450:CDS |
| TCTTTATATCTGGAGGTGAT+GGG | 0.525643 | 8.3:+57678706 | MS.gene88450:CDS |
| TCTCTTCAACAGCGGCATGC+TGG | 0.525744 | 8.3:+57674093 | MS.gene88450:CDS |
| TGCTTGAGCGTGAGGAGACA+AGG | 0.527592 | 8.3:+57675523 | MS.gene88450:CDS |
| AAGATAGCATTTGGGAGCGA+TGG | 0.529677 | 8.3:+57675991 | MS.gene88450:CDS |
| TTCAGGTTCACCTCCCAAAA+GGG | 0.529740 | 8.3:+57665408 | MS.gene88450:CDS |
| GACGTAGGATAAGCAGGAGG+TGG | 0.530557 | 8.3:-57665481 | None:intergenic |
| GCTAAATGCTCTTGTGGGAA+AGG | 0.530794 | 8.3:+57667559 | MS.gene88450:CDS |
| CAGAGTGACGCAGGTTCAGT+TGG | 0.531247 | 8.3:+57665355 | MS.gene88450:intron |
| CCCATGCATAGCAGGTGTGA+TGG | 0.531431 | 8.3:-57669312 | None:intergenic |
| AGCCCTGAGACCTTCAACCA+TGG | 0.531646 | 8.3:-57665608 | None:intergenic |
| AGCTTGCGTTCCAAGGTTGA+AGG | 0.531998 | 8.3:+57670323 | MS.gene88450:CDS |
| TTCTTCCAGTAGAAGCCTCC+TGG | 0.532875 | 8.3:-57671249 | None:intergenic |
| AAGAGATACTTACTCTTCCA+TGG | 0.536527 | 8.3:-57664263 | None:intergenic |
| GTTTACAGTATGTTATCACT+AGG | 0.537475 | 8.3:+57670210 | MS.gene88450:intron |
| CAATGAGGCTTGAAGAAGAC+TGG | 0.538415 | 8.3:-57677778 | None:intergenic |
| TTGTGGGAAAGGCAGGGAAA+AGG | 0.538801 | 8.3:+57667570 | MS.gene88450:CDS |
| CTGCAGAAATAGGAACAGGC+GGG | 0.539263 | 8.3:-57665435 | None:intergenic |
| AAGCATGCGTGTTCAGTTGG+AGG | 0.540724 | 8.3:+57666564 | MS.gene88450:CDS |
| AACCCAGTGTTTCAGGCTCT+AGG | 0.541034 | 8.3:+57677018 | MS.gene88450:CDS |
| GGATCTCATATGCAGTTTCA+CGG | 0.541406 | 8.3:-57666290 | None:intergenic |
| GATTCCCCAAATCCAACCAC+AGG | 0.541844 | 8.3:-57667860 | None:intergenic |
| GGTGGAGCGAGTTACTCAAC+AGG | 0.542267 | 8.3:+57673025 | MS.gene88450:CDS |
| AATCTTGTTGTTAATGACTT+GGG | 0.544591 | 8.3:+57674769 | MS.gene88450:CDS |
| AGATGGGCTGACAAGCAGCT+TGG | 0.545212 | 8.3:+57670392 | MS.gene88450:CDS |
| TGGTCTCTCCGCGAGTGGAA+TGG | 0.546331 | 8.3:-57668401 | None:intergenic |
| TGCTTCTAATATATCAAGAT+CGG | 0.546451 | 8.3:+57665510 | MS.gene88450:CDS |
| TGTTCTCACGCGGTACAGTA+AGG | 0.547334 | 8.3:+57675449 | MS.gene88450:CDS |
| TTGTGGAGCCTCTCAGGGAT+CGG | 0.547773 | 8.3:+57677748 | MS.gene88450:CDS |
| GACAATGCTCTTCAAGTGTA+CGG | 0.547883 | 8.3:+57674745 | MS.gene88450:CDS |
| TGGCTTGTGCTGGAGCCACA+GGG | 0.548621 | 8.3:+57666316 | MS.gene88450:CDS |
| TCACAGTCTCAAAATGCTCC+CGG | 0.549058 | 8.3:+57666523 | MS.gene88450:CDS |
| CGAGCTGGTCTCTCCGCGAG+TGG | 0.549369 | 8.3:-57668406 | None:intergenic |
| TTCTTCTGCAAGCAATGCCA+AGG | 0.549442 | 8.3:-57672020 | None:intergenic |
| TAACTGGTGAAATATGCCAT+TGG | 0.552117 | 8.3:+57668437 | MS.gene88450:CDS |
| AGGGTTGCTAAATGCTCTTG+TGG | 0.552444 | 8.3:+57667553 | MS.gene88450:CDS |
| CCAACTTTGCGATATTGTTG+TGG | 0.553081 | 8.3:+57677731 | MS.gene88450:CDS |
| GGGAAAGGCAGGGAAAAGGA+TGG | 0.557671 | 8.3:+57667574 | MS.gene88450:CDS |
| GATGCAGATATCTGAGGCAA+TGG | 0.557789 | 8.3:+57667514 | MS.gene88450:intron |
| TTCCATGGTTGAAGGTCTCA+GGG | 0.563715 | 8.3:+57665606 | MS.gene88450:CDS |
| CGCGTGAGAACAGGCACAGG+TGG | 0.565068 | 8.3:-57675438 | None:intergenic |
| GGCAAAGATTGAGGAATCTG+AGG | 0.566651 | 8.3:+57667916 | MS.gene88450:CDS |
| TGGAACCTTGGTGTTACGCT+GGG | 0.566764 | 8.3:+57672971 | MS.gene88450:CDS |
| AGATGACGACAATACTTCCA+TGG | 0.567194 | 8.3:+57665591 | MS.gene88450:CDS |
| ATGTTATCACTAGGGAGCAT+AGG | 0.567764 | 8.3:+57670219 | MS.gene88450:CDS |
| CCAGTTAAGTCACCCCGAGC+TGG | 0.567931 | 8.3:-57668421 | None:intergenic |
| ACGCGGTACAGTAAGGAAGC+TGG | 0.570085 | 8.3:+57675456 | MS.gene88450:CDS |
| GGAAAGCATGCGTGTTCAGT+TGG | 0.570462 | 8.3:+57666561 | MS.gene88450:CDS |
| GAAATATGCCATTGGGCAGA+TGG | 0.572366 | 8.3:+57668445 | MS.gene88450:CDS |
| TGTTCAGCACTATCCAGAAA+CGG | 0.573586 | 8.3:-57672247 | None:intergenic |
| AACTGCATATGAGATCCTCT+TGG | 0.573691 | 8.3:+57666296 | MS.gene88450:CDS |
| TTGTTTCTTCAGAAATTGAG+AGG | 0.574868 | 8.3:-57679490 | None:intergenic |
| AGTTTACAGAATTGTAGAGG+AGG | 0.575246 | 8.3:+57674128 | MS.gene88450:CDS |
| GAGGAAATTGAATCTCTACC+AGG | 0.575719 | 8.3:+57672378 | MS.gene88450:CDS |
| AACAACGAGGCCAGCAGGAG+AGG | 0.575915 | 8.3:+57670288 | MS.gene88450:CDS |
| GACGCAAGACAAACGAGTTG+AGG | 0.576589 | 8.3:+57667885 | MS.gene88450:CDS |
| TAGGAATTCTTTATATCTGG+AGG | 0.577667 | 8.3:+57678699 | MS.gene88450:intron |
| CACTCGTGTGCTTGAGCGTG+AGG | 0.578334 | 8.3:+57675515 | MS.gene88450:CDS |
| CGGGTTGTGATCAAGTTGCA+TGG | 0.578548 | 8.3:+57678768 | MS.gene88450:CDS |
| AGGCAACTTTACAGCAAGAT+CGG | 0.579664 | 8.3:-57665653 | None:intergenic |
| TGGCTTTAACAGAGTGACGC+AGG | 0.582418 | 8.3:+57665346 | MS.gene88450:intron |
| TATGTCACATGAGCATCCCT+TGG | 0.582581 | 8.3:+57672003 | MS.gene88450:CDS |
| GCTCTAGACTCTCAGCTGCT+GGG | 0.582829 | 8.3:-57672297 | None:intergenic |
| TTTACAGTATGTTATCACTA+GGG | 0.583840 | 8.3:+57670211 | MS.gene88450:intron |
| CAACCACAGGGTGATTAACC+AGG | 0.587243 | 8.3:-57667847 | None:intergenic |
| ATCTTCTTCAAAGATACAGA+AGG | 0.591854 | 8.3:+57664386 | MS.gene88450:CDS |
| CACTCGCGGAGAGACCAGCT+CGG | 0.592929 | 8.3:+57668407 | MS.gene88450:CDS |
| GATCAAGTTGCATGGCTATG+AGG | 0.593691 | 8.3:+57678776 | MS.gene88450:CDS |
| TATTGTTGTGGAGCCTCTCA+GGG | 0.597161 | 8.3:+57677743 | MS.gene88450:CDS |
| ATGCTCTTGTGGGAAAGGCA+GGG | 0.597425 | 8.3:+57667564 | MS.gene88450:CDS |
| GAGATTATCATGATCATACT+GGG | 0.597495 | 8.3:+57664662 | MS.gene88450:CDS |
| CCATCACACCTGCTATGCAT+GGG | 0.599808 | 8.3:+57669312 | MS.gene88450:CDS |
| TTTAACTGGACACAAAGTGT+TGG | 0.599936 | 8.3:-57675573 | None:intergenic |
| ACCCTAGAGCCTGAAACACT+GGG | 0.600099 | 8.3:-57677020 | None:intergenic |
| TTCAAAGATACAGAAGGGAT+AGG | 0.600469 | 8.3:+57664392 | MS.gene88450:CDS |
| TTCAAAGGACAGAATGCTTG+AGG | 0.601000 | 8.3:+57668362 | MS.gene88450:CDS |
| TGCAGAAATAGGAACAGGCG+GGG | 0.603842 | 8.3:-57665434 | None:intergenic |
| AATAACAAACATACCATTTG+GGG | 0.607762 | 8.3:-57664688 | None:intergenic |
| AGGATAAGCAGGAGGTGGAG+TGG | 0.609506 | 8.3:-57665476 | None:intergenic |
| TTGGTCTTAAAGTTCCAATG+AGG | 0.609620 | 8.3:+57674689 | MS.gene88450:CDS |
| ATGGACATATAAAAGGTCGC+AGG | 0.610658 | 8.3:+57676010 | MS.gene88450:CDS |
| ATCACGATCGCTAATTGGCA+AGG | 0.610845 | 8.3:-57671406 | None:intergenic |
| GAAGACTTGAAATCTGCAAG+TGG | 0.611796 | 8.3:+57679381 | MS.gene88450:CDS |
| TCTTCTTCAAAGATACAGAA+GGG | 0.613959 | 8.3:+57664387 | MS.gene88450:CDS |
| AAGAAAGTTGTAATGCCACC+TGG | 0.616050 | 8.3:+57664454 | MS.gene88450:CDS |
| ATACCTCACTAAAATGCAGA+TGG | 0.616453 | 8.3:-57670421 | None:intergenic |
| ATTGGTAACCATCTGCCCAA+TGG | 0.619789 | 8.3:-57668453 | None:intergenic |
| ACCCAATATCTCTTCAACAG+CGG | 0.624424 | 8.3:+57674085 | MS.gene88450:CDS |
| GGAGGTGAACCTGAAGACTC+CGG | 0.626502 | 8.3:-57665400 | None:intergenic |
| CAGTGTTTCAGGCTCTAGGG+TGG | 0.627323 | 8.3:+57677022 | MS.gene88450:CDS |
| AGAATGCTTGAGGTCTCTAA+GGG | 0.627425 | 8.3:+57668372 | MS.gene88450:CDS |
| GGAGTGGAAACAGCAATAGG+AGG | 0.639496 | 8.3:-57665460 | None:intergenic |
| GGAGGTGATGGGCTTCCTCG+GGG | 0.639585 | 8.3:+57678717 | MS.gene88450:CDS |
| GGAGATTGCCATTCCACTCG+CGG | 0.641711 | 8.3:+57668393 | MS.gene88450:CDS |
| GATTAAAGTAATAACCAATG+AGG | 0.646151 | 8.3:-57677793 | None:intergenic |
| GTCACTATCCGATCCCTGAG+AGG | 0.647026 | 8.3:-57677756 | None:intergenic |
| GAAGAGCATTGTCAATGCCA+CGG | 0.648397 | 8.3:-57674735 | None:intergenic |
| TACCGCGTGAGAACAGGCAC+AGG | 0.649998 | 8.3:-57675441 | None:intergenic |
| ATGGACATTAGAACAAAACA+AGG | 0.654155 | 8.3:+57667533 | MS.gene88450:CDS |
| CACCTGTGCCTGTTCTCACG+CGG | 0.655073 | 8.3:+57675439 | MS.gene88450:CDS |
| AAGATCGGAGTCTTTAGACT+CGG | 0.655303 | 8.3:+57665525 | MS.gene88450:CDS |
| GAGACATCCTCAAGCAACTG+TGG | 0.657830 | 8.3:+57672096 | MS.gene88450:CDS |
| GCAAGTGGCCTAGAAATGCA+AGG | 0.658732 | 8.3:+57679396 | MS.gene88450:CDS |
| ACGCAGCAAAGCAACTCCAA+AGG | 0.659543 | 8.3:-57667611 | None:intergenic |
| GCAGAAATAGGAACAGGCGG+GGG | 0.659901 | 8.3:-57665433 | None:intergenic |
| GCTAATTGGCAAGGACTGTG+TGG | 0.660146 | 8.3:-57671397 | None:intergenic |
| ACTGCAGAAATAGGAACAGG+CGG | 0.660859 | 8.3:-57665436 | None:intergenic |
| GCAGATACCACAGTTGCTTG+AGG | 0.666050 | 8.3:-57672103 | None:intergenic |
| TGGCTCCAGCACAAGCCAAG+AGG | 0.672051 | 8.3:-57666311 | None:intergenic |
| AATTAAGCATGCATTTACAA+GGG | 0.677463 | 8.3:+57671455 | MS.gene88450:CDS |
| TCTTCTGCAAGCAATGCCAA+GGG | 0.677560 | 8.3:-57672019 | None:intergenic |
| TTAGAAGCAACCGGAGACGT+AGG | 0.681205 | 8.3:-57665496 | None:intergenic |
| CTCGCGGAGAGACCAGCTCG+GGG | 0.681496 | 8.3:+57668409 | MS.gene88450:CDS |
| TGTATTTGACATGCTAGACG+AGG | 0.686765 | 8.3:+57668510 | MS.gene88450:CDS |
| AAAATGCCGAGATCTTGCTG+AGG | 0.687979 | 8.3:+57672359 | MS.gene88450:CDS |
| GACCACCATCTAAAATAACA+CGG | 0.691754 | 8.3:-57677883 | None:intergenic |
| GGGCCTGGTTAATCACCCTG+TGG | 0.692301 | 8.3:+57667844 | MS.gene88450:CDS |
| TGTATGGATGCAGATATCTG+AGG | 0.701598 | 8.3:+57667508 | MS.gene88450:intron |
| GAATTGAATAGCATGTTCCG+TGG | 0.704393 | 8.3:+57674718 | MS.gene88450:CDS |
| GAGCGCATTTGTGAATACAC+TGG | 0.710258 | 8.3:+57676862 | MS.gene88450:CDS |
| AGACGAGGGAAAGCTGACAG+AGG | 0.713100 | 8.3:+57668525 | MS.gene88450:CDS |
| GTATTTGACATGCTAGACGA+GGG | 0.714794 | 8.3:+57668511 | MS.gene88450:CDS |
| GGAGCGAGTTACTCAACAGG+AGG | 0.714971 | 8.3:+57673028 | MS.gene88450:CDS |
| GAATCACCTGTGGAAAACGG+AGG | 0.717337 | 8.3:-57665673 | None:intergenic |
| ATTCCCCAAATCCAACCACA+GGG | 0.718118 | 8.3:-57667859 | None:intergenic |
| TAGTGCTGAACATTTAAGTG+AGG | 0.724046 | 8.3:+57672258 | MS.gene88450:CDS |
| GTTAGGACGCTAATTTCACG+GGG | 0.727786 | 8.3:-57675546 | None:intergenic |
| CAGTTGCGATGATTACCAGG+AGG | 0.729936 | 8.3:+57671234 | MS.gene88450:CDS |
| TCTAGCGTAACTGCGCCAGG+TGG | 0.733072 | 8.3:-57664469 | None:intergenic |
| TGATTACACAGCAAGCAAGG+AGG | 0.737507 | 8.3:+57675407 | MS.gene88450:intron |
| ATTGACCCAGCGTAACACCA+AGG | 0.739352 | 8.3:-57672976 | None:intergenic |
| TGGACATTAGAACAAAACAA+GGG | 0.748934 | 8.3:+57667534 | MS.gene88450:CDS |
| AGTGGCCTAGAAATGCAAGG+TGG | 0.753482 | 8.3:+57679399 | MS.gene88450:CDS |
| GGAGACGTAGGATAAGCAGG+AGG | 0.780399 | 8.3:-57665484 | None:intergenic |
| ACAAGAAAGAGAGCTAACTG+TGG | 0.782116 | 8.3:+57665549 | MS.gene88450:CDS |
| ATACCATTGATGGAACAACG+AGG | 0.849226 | 8.3:+57670275 | MS.gene88450:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 57664265 | 57679539 | 57664265 | ID=MS.gene88450 |
| chr8.3 | mRNA | 57664265 | 57679539 | 57664265 | ID=MS.gene88450.t1;Parent=MS.gene88450 |
| chr8.3 | exon | 57664265 | 57664272 | 57664265 | ID=MS.gene88450.t1.exon1;Parent=MS.gene88450.t1 |
| chr8.3 | CDS | 57664265 | 57664272 | 57664265 | ID=cds.MS.gene88450.t1;Parent=MS.gene88450.t1 |
| chr8.3 | exon | 57664372 | 57664547 | 57664372 | ID=MS.gene88450.t1.exon2;Parent=MS.gene88450.t1 |
| chr8.3 | CDS | 57664372 | 57664547 | 57664372 | ID=cds.MS.gene88450.t1;Parent=MS.gene88450.t1 |
| chr8.3 | exon | 57664632 | 57664696 | 57664632 | ID=MS.gene88450.t1.exon3;Parent=MS.gene88450.t1 |
| chr8.3 | CDS | 57664632 | 57664696 | 57664632 | ID=cds.MS.gene88450.t1;Parent=MS.gene88450.t1 |
| chr8.3 | exon | 57665358 | 57665688 | 57665358 | ID=MS.gene88450.t1.exon4;Parent=MS.gene88450.t1 |
| chr8.3 | CDS | 57665358 | 57665688 | 57665358 | ID=cds.MS.gene88450.t1;Parent=MS.gene88450.t1 |
| chr8.3 | exon | 57666271 | 57666337 | 57666271 | ID=MS.gene88450.t1.exon5;Parent=MS.gene88450.t1 |
| chr8.3 | CDS | 57666271 | 57666337 | 57666271 | ID=cds.MS.gene88450.t1;Parent=MS.gene88450.t1 |
| chr8.3 | exon | 57666429 | 57666585 | 57666429 | ID=MS.gene88450.t1.exon6;Parent=MS.gene88450.t1 |
| chr8.3 | CDS | 57666429 | 57666585 | 57666429 | ID=cds.MS.gene88450.t1;Parent=MS.gene88450.t1 |
| chr8.3 | exon | 57667521 | 57667688 | 57667521 | ID=MS.gene88450.t1.exon7;Parent=MS.gene88450.t1 |
| chr8.3 | CDS | 57667521 | 57667688 | 57667521 | ID=cds.MS.gene88450.t1;Parent=MS.gene88450.t1 |
| chr8.3 | exon | 57667827 | 57667937 | 57667827 | ID=MS.gene88450.t1.exon8;Parent=MS.gene88450.t1 |
| chr8.3 | CDS | 57667827 | 57667937 | 57667827 | ID=cds.MS.gene88450.t1;Parent=MS.gene88450.t1 |
| chr8.3 | exon | 57668337 | 57668546 | 57668337 | ID=MS.gene88450.t1.exon9;Parent=MS.gene88450.t1 |
| chr8.3 | CDS | 57668337 | 57668546 | 57668337 | ID=cds.MS.gene88450.t1;Parent=MS.gene88450.t1 |
| chr8.3 | exon | 57669247 | 57669348 | 57669247 | ID=MS.gene88450.t1.exon10;Parent=MS.gene88450.t1 |
| chr8.3 | CDS | 57669247 | 57669348 | 57669247 | ID=cds.MS.gene88450.t1;Parent=MS.gene88450.t1 |
| chr8.3 | exon | 57670218 | 57670439 | 57670218 | ID=MS.gene88450.t1.exon11;Parent=MS.gene88450.t1 |
| chr8.3 | CDS | 57670218 | 57670439 | 57670218 | ID=cds.MS.gene88450.t1;Parent=MS.gene88450.t1 |
| chr8.3 | exon | 57671206 | 57671280 | 57671206 | ID=MS.gene88450.t1.exon12;Parent=MS.gene88450.t1 |
| chr8.3 | CDS | 57671206 | 57671280 | 57671206 | ID=cds.MS.gene88450.t1;Parent=MS.gene88450.t1 |
| chr8.3 | exon | 57671396 | 57671476 | 57671396 | ID=MS.gene88450.t1.exon13;Parent=MS.gene88450.t1 |
| chr8.3 | CDS | 57671396 | 57671476 | 57671396 | ID=cds.MS.gene88450.t1;Parent=MS.gene88450.t1 |
| chr8.3 | exon | 57671977 | 57672159 | 57671977 | ID=MS.gene88450.t1.exon14;Parent=MS.gene88450.t1 |
| chr8.3 | CDS | 57671977 | 57672159 | 57671977 | ID=cds.MS.gene88450.t1;Parent=MS.gene88450.t1 |
| chr8.3 | exon | 57672244 | 57672399 | 57672244 | ID=MS.gene88450.t1.exon15;Parent=MS.gene88450.t1 |
| chr8.3 | CDS | 57672244 | 57672399 | 57672244 | ID=cds.MS.gene88450.t1;Parent=MS.gene88450.t1 |
| chr8.3 | exon | 57672957 | 57673049 | 57672957 | ID=MS.gene88450.t1.exon16;Parent=MS.gene88450.t1 |
| chr8.3 | CDS | 57672957 | 57673049 | 57672957 | ID=cds.MS.gene88450.t1;Parent=MS.gene88450.t1 |
| chr8.3 | exon | 57674078 | 57674149 | 57674078 | ID=MS.gene88450.t1.exon17;Parent=MS.gene88450.t1 |
| chr8.3 | CDS | 57674078 | 57674149 | 57674078 | ID=cds.MS.gene88450.t1;Parent=MS.gene88450.t1 |
| chr8.3 | exon | 57674673 | 57674790 | 57674673 | ID=MS.gene88450.t1.exon18;Parent=MS.gene88450.t1 |
| chr8.3 | CDS | 57674673 | 57674790 | 57674673 | ID=cds.MS.gene88450.t1;Parent=MS.gene88450.t1 |
| chr8.3 | exon | 57675418 | 57675605 | 57675418 | ID=MS.gene88450.t1.exon19;Parent=MS.gene88450.t1 |
| chr8.3 | CDS | 57675418 | 57675605 | 57675418 | ID=cds.MS.gene88450.t1;Parent=MS.gene88450.t1 |
| chr8.3 | exon | 57675963 | 57676044 | 57675963 | ID=MS.gene88450.t1.exon20;Parent=MS.gene88450.t1 |
| chr8.3 | CDS | 57675963 | 57676044 | 57675963 | ID=cds.MS.gene88450.t1;Parent=MS.gene88450.t1 |
| chr8.3 | exon | 57676791 | 57676883 | 57676791 | ID=MS.gene88450.t1.exon21;Parent=MS.gene88450.t1 |
| chr8.3 | CDS | 57676791 | 57676883 | 57676791 | ID=cds.MS.gene88450.t1;Parent=MS.gene88450.t1 |
| chr8.3 | exon | 57676964 | 57677070 | 57676964 | ID=MS.gene88450.t1.exon22;Parent=MS.gene88450.t1 |
| chr8.3 | CDS | 57676964 | 57677070 | 57676964 | ID=cds.MS.gene88450.t1;Parent=MS.gene88450.t1 |
| chr8.3 | exon | 57677723 | 57677800 | 57677723 | ID=MS.gene88450.t1.exon23;Parent=MS.gene88450.t1 |
| chr8.3 | CDS | 57677723 | 57677800 | 57677723 | ID=cds.MS.gene88450.t1;Parent=MS.gene88450.t1 |
| chr8.3 | exon | 57677872 | 57677967 | 57677872 | ID=MS.gene88450.t1.exon24;Parent=MS.gene88450.t1 |
| chr8.3 | CDS | 57677872 | 57677967 | 57677872 | ID=cds.MS.gene88450.t1;Parent=MS.gene88450.t1 |
| chr8.3 | exon | 57678702 | 57678797 | 57678702 | ID=MS.gene88450.t1.exon25;Parent=MS.gene88450.t1 |
| chr8.3 | CDS | 57678702 | 57678797 | 57678702 | ID=cds.MS.gene88450.t1;Parent=MS.gene88450.t1 |
| chr8.3 | exon | 57679366 | 57679539 | 57679366 | ID=MS.gene88450.t1.exon26;Parent=MS.gene88450.t1 |
| chr8.3 | CDS | 57679366 | 57679539 | 57679366 | ID=cds.MS.gene88450.t1;Parent=MS.gene88450.t1 |
| Gene Sequence |
| Protein sequence |
