Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88463.t1 | XP_003627885.2 | 97.1 | 339 | 10 | 0 | 1 | 339 | 1 | 339 | 4.70E-147 | 530.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88463.t1 | E4NKF8 | 30.3 | 297 | 194 | 5 | 2 | 297 | 399 | 683 | 3.3e-08 | 60.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88463.t1 | G7LGS1 | 97.1 | 339 | 10 | 0 | 1 | 339 | 1 | 339 | 3.4e-147 | 530.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049181 | MS.gene88463 | 0.818874 | 1.56E-52 | -1.69E-46 |
| MS.gene049312 | MS.gene88463 | 0.805518 | 1.28E-49 | -1.69E-46 |
| MS.gene050363 | MS.gene88463 | 0.801879 | 7.31E-49 | -1.69E-46 |
| MS.gene051946 | MS.gene88463 | 0.806624 | 7.52E-50 | -1.69E-46 |
| MS.gene054954 | MS.gene88463 | -0.800254 | 1.57E-48 | -1.69E-46 |
| MS.gene057014 | MS.gene88463 | 0.816074 | 6.67E-52 | -1.69E-46 |
| MS.gene059022 | MS.gene88463 | -0.802809 | 4.70E-49 | -1.69E-46 |
| MS.gene060237 | MS.gene88463 | 0.824811 | 6.59E-54 | -1.69E-46 |
| MS.gene060337 | MS.gene88463 | 0.809064 | 2.28E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene88463 | MS.gene027334 | PPI |
| MS.gene88463 | MS.gene000712 | PPI |
| MS.gene88463 | MS.gene051287 | PPI |
| MS.gene88463 | MS.gene023023 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88463.t1 | MTR_8g039560 | 97.640 | 339 | 8 | 0 | 1 | 339 | 1 | 339 | 0.0 | 664 |
| MS.gene88463.t1 | MTR_2g018010 | 32.107 | 299 | 187 | 7 | 1 | 297 | 389 | 673 | 6.23e-29 | 117 |
| MS.gene88463.t1 | MTR_5g083030 | 31.333 | 300 | 187 | 8 | 2 | 297 | 399 | 683 | 1.52e-27 | 114 |
| MS.gene88463.t1 | MTR_4g485520 | 31.834 | 289 | 179 | 9 | 7 | 294 | 372 | 643 | 2.56e-25 | 107 |
| MS.gene88463.t1 | MTR_4g485520 | 31.834 | 289 | 179 | 9 | 7 | 294 | 204 | 475 | 3.73e-25 | 105 |
| MS.gene88463.t1 | MTR_1g094215 | 32.013 | 303 | 185 | 12 | 2 | 300 | 156 | 441 | 2.12e-24 | 103 |
| MS.gene88463.t1 | MTR_1g094215 | 32.013 | 303 | 185 | 12 | 2 | 300 | 339 | 624 | 5.61e-24 | 103 |
| MS.gene88463.t1 | MTR_4g063800 | 32.323 | 297 | 181 | 10 | 3 | 297 | 348 | 626 | 5.96e-24 | 103 |
| MS.gene88463.t1 | MTR_7g078330 | 27.431 | 288 | 191 | 8 | 4 | 290 | 363 | 633 | 2.61e-20 | 92.4 |
| MS.gene88463.t1 | MTR_7g059405 | 30.000 | 290 | 181 | 11 | 10 | 297 | 363 | 632 | 3.19e-20 | 92.0 |
| MS.gene88463.t1 | MTR_3g466220 | 33.755 | 237 | 142 | 7 | 8 | 243 | 553 | 775 | 6.90e-20 | 91.3 |
| MS.gene88463.t1 | MTR_3g466220 | 33.755 | 237 | 142 | 7 | 8 | 243 | 532 | 754 | 8.85e-20 | 90.9 |
| MS.gene88463.t1 | MTR_7g097020 | 29.514 | 288 | 184 | 8 | 8 | 294 | 482 | 751 | 8.41e-18 | 85.1 |
| MS.gene88463.t1 | MTR_4g028960 | 32.372 | 312 | 175 | 14 | 1 | 297 | 373 | 663 | 3.01e-17 | 83.2 |
| MS.gene88463.t1 | MTR_1g069845 | 27.778 | 288 | 189 | 8 | 8 | 294 | 323 | 592 | 9.34e-17 | 81.6 |
| MS.gene88463.t1 | MTR_1g069845 | 27.778 | 288 | 189 | 8 | 8 | 294 | 444 | 713 | 1.36e-16 | 81.3 |
| MS.gene88463.t1 | MTR_1g069845 | 27.778 | 288 | 189 | 8 | 8 | 294 | 440 | 709 | 1.43e-16 | 81.3 |
| MS.gene88463.t1 | MTR_3g078160 | 28.767 | 292 | 189 | 10 | 10 | 297 | 380 | 656 | 1.35e-15 | 78.2 |
| MS.gene88463.t1 | MTR_3g078160 | 28.767 | 292 | 189 | 10 | 10 | 297 | 380 | 656 | 1.68e-15 | 77.8 |
| MS.gene88463.t1 | MTR_2g026130 | 28.522 | 291 | 190 | 8 | 8 | 297 | 175 | 448 | 1.44e-14 | 74.7 |
| MS.gene88463.t1 | MTR_2g011140 | 29.153 | 295 | 181 | 11 | 9 | 297 | 106 | 378 | 2.71e-14 | 73.6 |
| MS.gene88463.t1 | MTR_4g107010 | 28.136 | 295 | 187 | 10 | 11 | 297 | 386 | 663 | 9.08e-14 | 72.8 |
| MS.gene88463.t1 | MTR_1g018180 | 28.082 | 292 | 190 | 10 | 8 | 297 | 61 | 334 | 5.17e-13 | 69.3 |
| MS.gene88463.t1 | MTR_3g078340 | 26.644 | 289 | 195 | 7 | 10 | 297 | 213 | 485 | 6.37e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88463.t1 | AT1G08315 | 59.936 | 312 | 119 | 3 | 3 | 310 | 4 | 313 | 1.88e-124 | 360 |
| MS.gene88463.t1 | AT2G23140 | 33.681 | 288 | 172 | 8 | 8 | 294 | 354 | 623 | 8.35e-29 | 117 |
| MS.gene88463.t1 | AT2G23140 | 33.681 | 288 | 172 | 8 | 8 | 294 | 354 | 623 | 8.35e-29 | 117 |
| MS.gene88463.t1 | AT2G23140 | 33.681 | 288 | 172 | 8 | 8 | 294 | 543 | 812 | 1.63e-28 | 116 |
| MS.gene88463.t1 | AT2G23140 | 33.681 | 288 | 172 | 8 | 8 | 294 | 543 | 812 | 1.63e-28 | 116 |
| MS.gene88463.t1 | AT2G23140 | 33.681 | 288 | 172 | 8 | 8 | 294 | 546 | 815 | 1.65e-28 | 116 |
| MS.gene88463.t1 | AT1G23030 | 32.534 | 292 | 178 | 8 | 8 | 297 | 333 | 607 | 3.35e-27 | 112 |
| MS.gene88463.t1 | AT1G29340 | 30.838 | 334 | 206 | 9 | 1 | 326 | 401 | 717 | 1.34e-25 | 108 |
| MS.gene88463.t1 | AT5G67340 | 30.928 | 291 | 183 | 8 | 8 | 297 | 423 | 696 | 1.86e-22 | 99.0 |
| MS.gene88463.t1 | AT5G67340 | 30.928 | 291 | 183 | 8 | 8 | 297 | 423 | 696 | 1.86e-22 | 99.0 |
| MS.gene88463.t1 | AT1G71020 | 30.921 | 304 | 190 | 9 | 7 | 307 | 194 | 480 | 7.03e-22 | 96.7 |
| MS.gene88463.t1 | AT1G71020 | 30.921 | 304 | 190 | 9 | 7 | 307 | 342 | 628 | 1.01e-21 | 96.7 |
| MS.gene88463.t1 | AT3G46510 | 30.565 | 301 | 173 | 11 | 12 | 294 | 342 | 624 | 4.01e-20 | 91.7 |
| MS.gene88463.t1 | AT3G54850 | 31.208 | 298 | 185 | 10 | 2 | 297 | 341 | 620 | 5.26e-20 | 91.3 |
| MS.gene88463.t1 | AT2G28830 | 29.392 | 296 | 189 | 10 | 2 | 294 | 279 | 557 | 6.35e-20 | 91.3 |
| MS.gene88463.t1 | AT3G54790 | 30.175 | 285 | 181 | 7 | 11 | 294 | 441 | 708 | 9.46e-19 | 87.8 |
| MS.gene88463.t1 | AT3G54790 | 30.175 | 285 | 181 | 7 | 11 | 294 | 477 | 744 | 1.15e-18 | 87.4 |
| MS.gene88463.t1 | AT3G54790 | 30.175 | 285 | 181 | 7 | 11 | 294 | 477 | 744 | 1.15e-18 | 87.4 |
| MS.gene88463.t1 | AT5G01830 | 31.295 | 278 | 162 | 9 | 27 | 297 | 388 | 643 | 4.04e-16 | 79.7 |
| MS.gene88463.t1 | AT5G65200 | 28.657 | 335 | 198 | 13 | 11 | 329 | 229 | 538 | 5.37e-16 | 79.3 |
| MS.gene88463.t1 | AT5G42340 | 28.620 | 297 | 194 | 9 | 2 | 297 | 375 | 654 | 5.66e-16 | 79.3 |
| MS.gene88463.t1 | AT3G01400 | 30.508 | 295 | 179 | 13 | 8 | 295 | 64 | 339 | 3.85e-14 | 72.8 |
| MS.gene88463.t1 | AT1G60190 | 25.329 | 304 | 208 | 10 | 2 | 297 | 370 | 662 | 3.06e-12 | 68.2 |
| MS.gene88463.t1 | AT1G10560 | 25.828 | 302 | 204 | 10 | 3 | 297 | 385 | 673 | 1.39e-11 | 65.9 |
| MS.gene88463.t1 | AT5G62560 | 27.046 | 281 | 176 | 12 | 25 | 297 | 253 | 512 | 1.60e-11 | 65.9 |
| MS.gene88463.t1 | AT5G40140 | 26.531 | 294 | 197 | 7 | 11 | 300 | 233 | 511 | 7.82e-11 | 63.5 |
Find 83 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGGCGTTTAAGAAGGTTTC+TGG | 0.219872 | 8.3:-57817041 | MS.gene88463:CDS |
| TGCGCCTGATTCGGCTATTA+TGG | 0.221489 | 8.3:+57818480 | None:intergenic |
| GCTATTATGGGTCGGGTTGA+TGG | 0.308712 | 8.3:+57818493 | None:intergenic |
| ACATCTCTGATTTAGGTTGC+TGG | 0.315701 | 8.3:-57817080 | MS.gene88463:intron |
| AAGGGTGTAAAGATGAATAA+AGG | 0.319486 | 8.3:+57818437 | None:intergenic |
| CTCGATGAGTGATTCGATTC+GGG | 0.324566 | 8.3:+57818540 | None:intergenic |
| GCGCCTGATTCGGCTATTAT+GGG | 0.332670 | 8.3:+57818481 | None:intergenic |
| AACGAATCTTTCACCGTCCT+TGG | 0.340118 | 8.3:+57818151 | None:intergenic |
| ATTGCTGATGTTAAAGATAA+AGG | 0.343931 | 8.3:-57816861 | MS.gene88463:CDS |
| TTGAATAGTGATTCGTCGTT+TGG | 0.355196 | 8.3:-57816723 | MS.gene88463:CDS |
| GGTTCAGTTTGGTGTTGTTC+CGG | 0.382972 | 8.3:-57818080 | MS.gene88463:CDS |
| AAAGATAAAGGAAGTGTTAA+GGG | 0.391288 | 8.3:-57816849 | MS.gene88463:CDS |
| GTAAGGAATTGCGCCTGATT+CGG | 0.391749 | 8.3:+57818471 | None:intergenic |
| GGATTGAACAGCGGCGGCGG+CGG | 0.408949 | 8.3:+57818294 | None:intergenic |
| GGCGGATTGAACAGCGGCGG+CGG | 0.409584 | 8.3:+57818291 | None:intergenic |
| TTTAAGAAGGTTTCTGGTGT+TGG | 0.413108 | 8.3:-57817035 | MS.gene88463:CDS |
| TAAAGATAAAGGAAGTGTTA+AGG | 0.422699 | 8.3:-57816850 | MS.gene88463:CDS |
| GATGATTATCGTACTGTTGT+TGG | 0.425869 | 8.3:-57818235 | MS.gene88463:CDS |
| CGCGGTGGCGTTTGGTGCGA+TGG | 0.437208 | 8.3:-57816889 | MS.gene88463:CDS |
| AATCATCAACCGACGAAAGA+AGG | 0.438548 | 8.3:+57818251 | None:intergenic |
| GCTCGATGAGTGATTCGATT+CGG | 0.440076 | 8.3:+57818539 | None:intergenic |
| ACACCGCGCGTGGACATGAT+AGG | 0.441940 | 8.3:+57818361 | None:intergenic |
| GTAAGAGACGCGGTGGCGTT+TGG | 0.449671 | 8.3:-57816897 | MS.gene88463:CDS |
| CGACCCATAATAGCCGAATC+AGG | 0.450618 | 8.3:-57818484 | MS.gene88463:CDS |
| TTGCTACTGGTTCGAGTATG+AGG | 0.451497 | 8.3:-57816989 | MS.gene88463:CDS |
| AAGTGTTGAGGCGTTTAAGA+AGG | 0.460925 | 8.3:-57817048 | MS.gene88463:CDS |
| TTGAACAGCGGCGGCGGCGG+AGG | 0.468848 | 8.3:+57818297 | None:intergenic |
| TGCTTCCGCGGTTATTGCAC+AGG | 0.471008 | 8.3:-57818008 | MS.gene88463:intron |
| AAGTGTTAAGGGGAAGAGTA+AGG | 0.472134 | 8.3:-57816838 | MS.gene88463:CDS |
| GATCTGCTCGATCTTGCTAC+TGG | 0.479247 | 8.3:-57817002 | MS.gene88463:CDS |
| ATTGTTAATGATGGTAGAGT+TGG | 0.481041 | 8.3:-57818043 | MS.gene88463:CDS |
| TGATTCGGCTATTATGGGTC+GGG | 0.485936 | 8.3:+57818486 | None:intergenic |
| CTGATTCGGCTATTATGGGT+CGG | 0.492707 | 8.3:+57818485 | None:intergenic |
| GTTCGTAGTGATGGTGATGT+TGG | 0.499763 | 8.3:-57816747 | MS.gene88463:CDS |
| CGTGCTACGATGGTTCAGTT+TGG | 0.504494 | 8.3:-57818091 | MS.gene88463:CDS |
| GTGGCGTTTGGTGCGATGGA+TGG | 0.506730 | 8.3:-57816885 | MS.gene88463:CDS |
| CTGGTTCGAGTATGAGGACG+AGG | 0.510558 | 8.3:-57816983 | MS.gene88463:CDS |
| TGTGGTGGAGATGTGGTGGC+TGG | 0.510838 | 8.3:-57816924 | MS.gene88463:CDS |
| AGGGTGTAAAGATGAATAAA+GGG | 0.516148 | 8.3:+57818438 | None:intergenic |
| TTGTTAATGATGGTAGAGTT+GGG | 0.524798 | 8.3:-57818042 | MS.gene88463:CDS |
| GGTTTCTGGTGTTGGAGTGT+TGG | 0.526980 | 8.3:-57817027 | MS.gene88463:CDS |
| TTCTGGTGTTGGAGTGTTGG+CGG | 0.530110 | 8.3:-57817024 | MS.gene88463:CDS |
| TCCGTTGAATCGTGCTACGA+TGG | 0.531126 | 8.3:-57818101 | MS.gene88463:CDS |
| GAATCTTTCACCGTCCTTGG+CGG | 0.531492 | 8.3:+57818154 | None:intergenic |
| TCTTTCATGAATGAAGATAG+TGG | 0.538879 | 8.3:-57816699 | MS.gene88463:CDS |
| TAAAGGGTTTCAGCGAGGTA+AGG | 0.539730 | 8.3:+57818454 | None:intergenic |
| GACGAGGGAAAATGCGGTGT+CGG | 0.541817 | 8.3:-57816967 | MS.gene88463:CDS |
| CACGGTGATGTTCGTAGTGA+TGG | 0.549767 | 8.3:-57816774 | MS.gene88463:CDS |
| GATTCACAGCCTTCTTTCGT+CGG | 0.551912 | 8.3:-57818260 | MS.gene88463:CDS |
| CGCGTCGAGAACACCGCGCG+TGG | 0.558608 | 8.3:+57818351 | None:intergenic |
| TGTGAGATGTGGTGGAGATG+TGG | 0.560397 | 8.3:-57816931 | MS.gene88463:CDS |
| ACCATCGTAGCACGATTCAA+CGG | 0.561289 | 8.3:+57818100 | None:intergenic |
| CCGTCCTTGGCGGTGAAGAA+CGG | 0.564287 | 8.3:+57818164 | None:intergenic |
| GATTTAGGTTGCTGGTTGCG+AGG | 0.564684 | 8.3:-57817072 | MS.gene88463:intron |
| CTTAATCTTGTGAGATGTGG+TGG | 0.564928 | 8.3:-57816939 | MS.gene88463:CDS |
| TTGCTTAATCTTGTGAGATG+TGG | 0.567457 | 8.3:-57816942 | MS.gene88463:CDS |
| GCTGTGAATCGTAGCGGCGG+CGG | 0.577574 | 8.3:+57818273 | None:intergenic |
| GGAAAGGTTTAAAAGTGTTG+CGG | 0.581602 | 8.3:+57818399 | None:intergenic |
| GTCACCGTTCTTCACCGCCA+AGG | 0.589598 | 8.3:-57818168 | MS.gene88463:CDS |
| CTAGCGTCCGCACCGCGCGG+CGG | 0.594313 | 8.3:+57818593 | None:intergenic |
| ACGCAAACCGCCGCGCGGTG+CGG | 0.595256 | 8.3:-57818600 | MS.gene88463:CDS |
| GAGTTGATGAGAGTGATGGT+TGG | 0.595956 | 8.3:-57816810 | MS.gene88463:CDS |
| GGCGGCGGATTGAACAGCGG+CGG | 0.598501 | 8.3:+57818288 | None:intergenic |
| GTTGGTGATGTTCGTAGTCA+CGG | 0.603776 | 8.3:-57816792 | MS.gene88463:CDS |
| AAGATAAAGGAAGTGTTAAG+GGG | 0.604994 | 8.3:-57816848 | MS.gene88463:CDS |
| CCGTTCTTCACCGCCAAGGA+CGG | 0.608476 | 8.3:-57818164 | MS.gene88463:CDS |
| GATGGTGATGTTCGTAGTGA+TGG | 0.609433 | 8.3:-57816756 | MS.gene88463:CDS |
| GAGATGTGGTGGAGATGTGG+TGG | 0.610433 | 8.3:-57816928 | MS.gene88463:CDS |
| TATGAGGACGAGGGAAAATG+CGG | 0.612956 | 8.3:-57816973 | MS.gene88463:CDS |
| GATTGTTGAAGATGCTTCCG+CGG | 0.639925 | 8.3:-57818020 | MS.gene88463:CDS |
| TGGAGATGTAAGAGACGCGG+TGG | 0.667404 | 8.3:-57816904 | MS.gene88463:CDS |
| AAGGCTGTGAATCGTAGCGG+CGG | 0.667512 | 8.3:+57818270 | None:intergenic |
| AGCGGCGGCGGATTGAACAG+CGG | 0.667946 | 8.3:+57818285 | None:intergenic |
| AATGGACGCAAACCGCCGCG+CGG | 0.672166 | 8.3:-57818605 | MS.gene88463:CDS |
| ATACTAGCGTCCGCACCGCG+CGG | 0.672467 | 8.3:+57818590 | None:intergenic |
| TGGTTGCGAGGAAAGTGTTG+AGG | 0.674105 | 8.3:-57817060 | MS.gene88463:CDS |
| ACAATCAACGAAAACAACGC+CGG | 0.685893 | 8.3:+57818061 | None:intergenic |
| ATGAATAAAGGGTTTCAGCG+AGG | 0.686647 | 8.3:+57818449 | None:intergenic |
| GAACCTATCATGTCCACGCG+CGG | 0.689698 | 8.3:-57818364 | MS.gene88463:CDS |
| AAGAAGGCTGTGAATCGTAG+CGG | 0.707499 | 8.3:+57818267 | None:intergenic |
| TGGTTCGAGTATGAGGACGA+GGG | 0.725606 | 8.3:-57816982 | MS.gene88463:CDS |
| GGCTGGAGATGTAAGAGACG+CGG | 0.727136 | 8.3:-57816907 | MS.gene88463:CDS |
| AATAACCTGTGCAATAACCG+CGG | 0.737571 | 8.3:+57818003 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATCTTATATTTTAACTTA+TGG | - | chr8.3:57817540-57817559 | MS.gene88463:intron | 10.0% |
| !! | CTATCTTATTATATTACTTA+GGG | + | chr8.3:57818137-57818156 | None:intergenic | 15.0% |
| !!! | TAAGAGTTAATTATTTTAAC+TGG | + | chr8.3:57818160-57818179 | None:intergenic | 15.0% |
| !! | CATTTATTAAATGATGTATG+TGG | + | chr8.3:57817432-57817451 | None:intergenic | 20.0% |
| !! | GCTATCTTATTATATTACTT+AGG | + | chr8.3:57818138-57818157 | None:intergenic | 20.0% |
| !! | TATTCATAAGTTATGAAACA+CGG | + | chr8.3:57817990-57818009 | None:intergenic | 20.0% |
| ! | AAAAAACAGCTTATGAAGAA+TGG | + | chr8.3:57817762-57817781 | None:intergenic | 25.0% |
| ! | AAGTAATACAATGTGATAGT+CGG | - | chr8.3:57818086-57818105 | MS.gene88463:CDS | 25.0% |
| ! | ACTATCACATTGTATTACTT+GGG | + | chr8.3:57818086-57818105 | None:intergenic | 25.0% |
| ! | ATGAAGAATGGAAAATACTT+GGG | + | chr8.3:57817750-57817769 | None:intergenic | 25.0% |
| ! | ATTGCTGATGTTAAAGATAA+AGG | - | chr8.3:57818429-57818448 | MS.gene88463:CDS | 25.0% |
| ! | TATGAAGAATGGAAAATACT+TGG | + | chr8.3:57817751-57817770 | None:intergenic | 25.0% |
| ! | TTCTGTGTAATTATATGTGT+CGG | - | chr8.3:57817898-57817917 | MS.gene88463:intron | 25.0% |
| !! | AACTTTTACATCTCTGATTT+AGG | - | chr8.3:57818203-57818222 | MS.gene88463:CDS | 25.0% |
| !! | TTTTTGCTTATAATAGTGAC+CGG | + | chr8.3:57817486-57817467 | None:intergenic | 25.0% |
| !!! | AAAGATAAAGGAAGTGTTAA+GGG | - | chr8.3:57818441-57818460 | MS.gene88463:CDS | 25.0% |
| !!! | TAAAGATAAAGGAAGTGTTA+AGG | - | chr8.3:57818440-57818459 | MS.gene88463:CDS | 25.0% |
| !!! | TTTTCGTTGATTGTTAATGA+TGG | - | chr8.3:57817238-57817257 | MS.gene88463:intron | 25.0% |
| AGGGTGTAAAGATGAATAAA+GGG | + | chr8.3:57816855-57816874 | None:intergenic | 30.0% | |
| ATTGTTAATGATGGTAGAGT+TGG | - | chr8.3:57817247-57817266 | MS.gene88463:intron | 30.0% | |
| CTATCACATTGTATTACTTG+GGG | + | chr8.3:57818085-57818104 | None:intergenic | 30.0% | |
| CTTCAAATTATTAGCAGTGT+CGG | + | chr8.3:57817867-57817886 | None:intergenic | 30.0% | |
| GACTATCACATTGTATTACT+TGG | + | chr8.3:57818087-57818106 | None:intergenic | 30.0% | |
| TAGAACAACTAACTCTCAAA+CGG | - | chr8.3:57818110-57818129 | MS.gene88463:CDS | 30.0% | |
| TCTTTCATGAATGAAGATAG+TGG | - | chr8.3:57818591-57818610 | MS.gene88463:CDS | 30.0% | |
| TTGTTAATGATGGTAGAGTT+GGG | - | chr8.3:57817248-57817267 | MS.gene88463:intron | 30.0% | |
| ! | AAGGGTGTAAAGATGAATAA+AGG | + | chr8.3:57816856-57816875 | None:intergenic | 30.0% |
| ! | GATAGGTTCTTTTTCTGTTA+TGG | + | chr8.3:57816915-57816934 | None:intergenic | 30.0% |
| ! | GTTCTTTTTCTGTTATGGAA+AGG | + | chr8.3:57816910-57816929 | None:intergenic | 30.0% |
| ! | TTTCATAAACTAGCTTGACA+AGG | - | chr8.3:57817787-57817806 | MS.gene88463:intron | 30.0% |
| !! | AAGATAAAGGAAGTGTTAAG+GGG | - | chr8.3:57818442-57818461 | MS.gene88463:CDS | 30.0% |
| AAGATTAGACGTCACATTGT+CGG | + | chr8.3:57817959-57817978 | None:intergenic | 35.0% | |
| ACAACACATACAACACATCT+GGG | - | chr8.3:57817665-57817684 | MS.gene88463:intron | 35.0% | |
| ACAATGTGACGTCTAATCTT+AGG | - | chr8.3:57817959-57817978 | MS.gene88463:intron | 35.0% | |
| AGAACAACTAACTCTCAAAC+GGG | - | chr8.3:57818111-57818130 | MS.gene88463:CDS | 35.0% | |
| ATTGTATTACTTGGGGCTTA+GGG | + | chr8.3:57818078-57818097 | None:intergenic | 35.0% | |
| GATGATTATCGTACTGTTGT+TGG | - | chr8.3:57817055-57817074 | MS.gene88463:CDS | 35.0% | |
| TCACCTGTGACATTAAATCT+GGG | + | chr8.3:57817717-57817736 | None:intergenic | 35.0% | |
| TGCTTATAATAGTGACCAGA+GGG | - | chr8.3:57817471-57817490 | MS.gene88463:intron | 35.0% | |
| TTCACCGTGACATTAAATCT+GGG | - | chr8.3:57817605-57817624 | MS.gene88463:intron | 35.0% | |
| TTCTATCTATATACACCCTC+TGG | + | chr8.3:57817489-57817508 | None:intergenic | 35.0% | |
| TTGAATAGTGATTCGTCGTT+TGG | - | chr8.3:57818567-57818586 | MS.gene88463:CDS | 35.0% | |
| TTGCTTAATCTTGTGAGATG+TGG | - | chr8.3:57818348-57818367 | MS.gene88463:CDS | 35.0% | |
| TTGCTTATAATAGTGACCAG+AGG | - | chr8.3:57817470-57817489 | MS.gene88463:intron | 35.0% | |
| ! | TTCTAGAAATGTACACACTC+CGG | - | chr8.3:57817336-57817355 | MS.gene88463:intron | 35.0% |
| !! | GGAAAGGTTTAAAAGTGTTG+CGG | + | chr8.3:57816894-57816913 | None:intergenic | 35.0% |
| !! | TTTAAGAAGGTTTCTGGTGT+TGG | - | chr8.3:57818255-57818274 | MS.gene88463:CDS | 35.0% |
| !!! | GATTCGGGTTTTTTCTGAAA+CGG | + | chr8.3:57816738-57816757 | None:intergenic | 35.0% |
| !!! | TTTTGAGTTGATGAGAGTGA+TGG | - | chr8.3:57818476-57818495 | MS.gene88463:CDS | 35.0% |
| AAGGTTATGAAGCACGGATA+CGG | - | chr8.3:57817806-57817825 | MS.gene88463:intron | 40.0% | |
| AAGTGTTAAGGGGAAGAGTA+AGG | - | chr8.3:57818452-57818471 | MS.gene88463:CDS | 40.0% | |
| AATAACCTGTGCAATAACCG+CGG | + | chr8.3:57817290-57817309 | None:intergenic | 40.0% | |
| AATCATCAACCGACGAAAGA+AGG | + | chr8.3:57817042-57817061 | None:intergenic | 40.0% | |
| ACAATCAACGAAAACAACGC+CGG | + | chr8.3:57817232-57817251 | None:intergenic | 40.0% | |
| ACACATTACCACACAACATC+TGG | - | chr8.3:57817637-57817656 | MS.gene88463:intron | 40.0% | |
| ATGAATAAAGGGTTTCAGCG+AGG | + | chr8.3:57816844-57816863 | None:intergenic | 40.0% | |
| ATTAAATCTGGGCCACACAA+AGG | + | chr8.3:57817706-57817725 | None:intergenic | 40.0% | |
| CACAACACATACAACACATC+TGG | - | chr8.3:57817664-57817683 | MS.gene88463:intron | 40.0% | |
| CACATTACCACACAACATCT+GGG | - | chr8.3:57817638-57817657 | MS.gene88463:intron | 40.0% | |
| CATTGTATTACTTGGGGCTT+AGG | + | chr8.3:57818079-57818098 | None:intergenic | 40.0% | |
| CTTAATCTTGTGAGATGTGG+TGG | - | chr8.3:57818351-57818370 | MS.gene88463:CDS | 40.0% | |
| CTTCACCGTGACATTAAATC+TGG | - | chr8.3:57817604-57817623 | MS.gene88463:intron | 40.0% | |
| CTTGACAAGGTTATGAAGCA+CGG | - | chr8.3:57817800-57817819 | MS.gene88463:intron | 40.0% | |
| GATGTGTTGTATGTGTTGTG+TGG | + | chr8.3:57817664-57817683 | None:intergenic | 40.0% | |
| GTCACCTGTGACATTAAATC+TGG | + | chr8.3:57817718-57817737 | None:intergenic | 40.0% | |
| GTGACCCAGATTTAATGTCA+CGG | + | chr8.3:57817612-57817631 | None:intergenic | 40.0% | |
| !! | AAGTGTTGAGGCGTTTAAGA+AGG | - | chr8.3:57818242-57818261 | MS.gene88463:CDS | 40.0% |
| !! | ACATCTCTGATTTAGGTTGC+TGG | - | chr8.3:57818210-57818229 | MS.gene88463:CDS | 40.0% |
| AACGAATCTTTCACCGTCCT+TGG | + | chr8.3:57817142-57817161 | None:intergenic | 45.0% | |
| AAGAAGGCTGTGAATCGTAG+CGG | + | chr8.3:57817026-57817045 | None:intergenic | 45.0% | |
| ACCATCGTAGCACGATTCAA+CGG | + | chr8.3:57817193-57817212 | None:intergenic | 45.0% | |
| CACAACACAACACCTTTGTG+TGG | - | chr8.3:57817691-57817710 | MS.gene88463:intron | 45.0% | |
| CTCGATGAGTGATTCGATTC+GGG | + | chr8.3:57816753-57816772 | None:intergenic | 45.0% | |
| GATTCACAGCCTTCTTTCGT+CGG | - | chr8.3:57817030-57817049 | MS.gene88463:CDS | 45.0% | |
| GATTGTTGAAGATGCTTCCG+CGG | - | chr8.3:57817270-57817289 | MS.gene88463:intron | 45.0% | |
| GCTCGATGAGTGATTCGATT+CGG | + | chr8.3:57816754-57816773 | None:intergenic | 45.0% | |
| GTAAGGAATTGCGCCTGATT+CGG | + | chr8.3:57816822-57816841 | None:intergenic | 45.0% | |
| TAAAGGGTTTCAGCGAGGTA+AGG | + | chr8.3:57816839-57816858 | None:intergenic | 45.0% | |
| TATGAGGACGAGGGAAAATG+CGG | - | chr8.3:57818317-57818336 | MS.gene88463:CDS | 45.0% | |
| TGGCCCAGATTTAATGTCAC+AGG | - | chr8.3:57817711-57817730 | MS.gene88463:intron | 45.0% | |
| ! | CGGTAGCGTTTTCTTGAGAA+GGG | + | chr8.3:57816874-57816893 | None:intergenic | 45.0% |
| ! | GAGGCGTTTAAGAAGGTTTC+TGG | - | chr8.3:57818249-57818268 | MS.gene88463:CDS | 45.0% |
| ! | GATGGTGATGTTCGTAGTGA+TGG | - | chr8.3:57818534-57818553 | MS.gene88463:CDS | 45.0% |
| ! | GTTCGTAGTGATGGTGATGT+TGG | - | chr8.3:57818525-57818544 | MS.gene88463:CDS | 45.0% |
| ! | TGATTCGGCTATTATGGGTC+GGG | + | chr8.3:57816807-57816826 | None:intergenic | 45.0% |
| !! | CACAAAGGTGTTGTGTTGTG+TGG | + | chr8.3:57817691-57817710 | None:intergenic | 45.0% |
| !! | CTGATTCGGCTATTATGGGT+CGG | + | chr8.3:57816808-57816827 | None:intergenic | 45.0% |
| !! | GAGTTGATGAGAGTGATGGT+TGG | - | chr8.3:57818480-57818499 | MS.gene88463:CDS | 45.0% |
| !! | GGTTCAGTTTGGTGTTGTTC+CGG | - | chr8.3:57817210-57817229 | MS.gene88463:intron | 45.0% |
| !! | GTTGGTGATGTTCGTAGTCA+CGG | - | chr8.3:57818498-57818517 | MS.gene88463:CDS | 45.0% |
| !! | TTGCTACTGGTTCGAGTATG+AGG | - | chr8.3:57818301-57818320 | MS.gene88463:CDS | 45.0% |
| ATGAAGCACGGATACGGACA+TGG | - | chr8.3:57817812-57817831 | MS.gene88463:intron | 50.0% | |
| CACGGTGATGTTCGTAGTGA+TGG | - | chr8.3:57818516-57818535 | MS.gene88463:CDS | 50.0% | |
| CGACCCATAATAGCCGAATC+AGG | - | chr8.3:57816806-57816825 | MS.gene88463:CDS | 50.0% | |
| CGTGCTACGATGGTTCAGTT+TGG | - | chr8.3:57817199-57817218 | MS.gene88463:intron | 50.0% | |
| CTTGGGGCTTAGGGTCTATT+TGG | + | chr8.3:57818069-57818088 | None:intergenic | 50.0% | |
| GAATCTTTCACCGTCCTTGG+CGG | + | chr8.3:57817139-57817158 | None:intergenic | 50.0% | |
| GATCTGCTCGATCTTGCTAC+TGG | - | chr8.3:57818288-57818307 | MS.gene88463:CDS | 50.0% | |
| TCCGTTGAATCGTGCTACGA+TGG | - | chr8.3:57817189-57817208 | MS.gene88463:intron | 50.0% | |
| TGGTTCGAGTATGAGGACGA+GGG | - | chr8.3:57818308-57818327 | MS.gene88463:CDS | 50.0% | |
| ! | GCGGTAGCGTTTTCTTGAGA+AGG | + | chr8.3:57816875-57816894 | None:intergenic | 50.0% |
| ! | TGTGAGATGTGGTGGAGATG+TGG | - | chr8.3:57818359-57818378 | MS.gene88463:CDS | 50.0% |
| !! | GATTTAGGTTGCTGGTTGCG+AGG | - | chr8.3:57818218-57818237 | MS.gene88463:CDS | 50.0% |
| !! | GCGCCTGATTCGGCTATTAT+GGG | + | chr8.3:57816812-57816831 | None:intergenic | 50.0% |
| !! | GCTATTATGGGTCGGGTTGA+TGG | + | chr8.3:57816800-57816819 | None:intergenic | 50.0% |
| !! | GGTTTCTGGTGTTGGAGTGT+TGG | - | chr8.3:57818263-57818282 | MS.gene88463:CDS | 50.0% |
| !! | TGCGCCTGATTCGGCTATTA+TGG | + | chr8.3:57816813-57816832 | None:intergenic | 50.0% |
| !! | TGGTTGCGAGGAAAGTGTTG+AGG | - | chr8.3:57818230-57818249 | MS.gene88463:CDS | 50.0% |
| !! | TTCTGGTGTTGGAGTGTTGG+CGG | - | chr8.3:57818266-57818285 | MS.gene88463:CDS | 50.0% |
| AAGGCTGTGAATCGTAGCGG+CGG | + | chr8.3:57817023-57817042 | None:intergenic | 55.0% | |
| ACGGATACGGACATGGACAC+CGG | - | chr8.3:57817819-57817838 | MS.gene88463:intron | 55.0% | |
| GAACCTATCATGTCCACGCG+CGG | - | chr8.3:57816926-57816945 | MS.gene88463:CDS | 55.0% | |
| GACGAGGGAAAATGCGGTGT+CGG | - | chr8.3:57818323-57818342 | MS.gene88463:CDS | 55.0% | |
| GGCTGGAGATGTAAGAGACG+CGG | - | chr8.3:57818383-57818402 | MS.gene88463:CDS | 55.0% | |
| GTCAGTGTCCATGTCATGCC+CGG | + | chr8.3:57817841-57817860 | None:intergenic | 55.0% | |
| TGCTTCCGCGGTTATTGCAC+AGG | - | chr8.3:57817282-57817301 | MS.gene88463:intron | 55.0% | |
| TGGAGATGTAAGAGACGCGG+TGG | - | chr8.3:57818386-57818405 | MS.gene88463:CDS | 55.0% | |
| TGTGTGGCCCAGATGTTGTG+TGG | + | chr8.3:57817648-57817667 | None:intergenic | 55.0% | |
| ! | CTGGTTCGAGTATGAGGACG+AGG | - | chr8.3:57818307-57818326 | MS.gene88463:CDS | 55.0% |
| ! | GAGATGTGGTGGAGATGTGG+TGG | - | chr8.3:57818362-57818381 | MS.gene88463:CDS | 55.0% |
| ACACCGCGCGTGGACATGAT+AGG | + | chr8.3:57816932-57816951 | None:intergenic | 60.0% | |
| CATGGACACCGGGCATGACA+TGG | - | chr8.3:57817830-57817849 | MS.gene88463:intron | 60.0% | |
| CCGTCCTTGGCGGTGAAGAA+CGG | + | chr8.3:57817129-57817148 | None:intergenic | 60.0% | |
| CCGTTCTTCACCGCCAAGGA+CGG | - | chr8.3:57817126-57817145 | MS.gene88463:intron | 60.0% | |
| CGGATACGGACATGGACACC+GGG | - | chr8.3:57817820-57817839 | MS.gene88463:intron | 60.0% | |
| GTAAGAGACGCGGTGGCGTT+TGG | - | chr8.3:57818393-57818412 | MS.gene88463:CDS | 60.0% | |
| GTCACCGTTCTTCACCGCCA+AGG | - | chr8.3:57817122-57817141 | MS.gene88463:intron | 60.0% | |
| ! | GTGTCGTGTTGCGTCGGTGT+CGG | - | chr8.3:57817920-57817939 | MS.gene88463:intron | 60.0% |
| ! | TGTGGTGGAGATGTGGTGGC+TGG | - | chr8.3:57818366-57818385 | MS.gene88463:CDS | 60.0% |
| !! | GTGGCGTTTGGTGCGATGGA+TGG | - | chr8.3:57818405-57818424 | MS.gene88463:CDS | 60.0% |
| !! | GTGTCGGTGTCGTGTTGCGT+CGG | - | chr8.3:57817914-57817933 | MS.gene88463:intron | 60.0% |
| ATACTAGCGTCCGCACCGCG+CGG | + | chr8.3:57816703-57816722 | None:intergenic | 65.0% | |
| GCTGTGAATCGTAGCGGCGG+CGG | + | chr8.3:57817020-57817039 | None:intergenic | 65.0% | |
| !! | AGCGGCGGCGGATTGAACAG+CGG | + | chr8.3:57817008-57817027 | None:intergenic | 65.0% |
| GGATTGAACAGCGGCGGCGG+CGG | + | chr8.3:57816999-57817018 | None:intergenic | 70.0% | |
| !! | CGCGGTGGCGTTTGGTGCGA+TGG | - | chr8.3:57818401-57818420 | MS.gene88463:CDS | 70.0% |
| !! | GGCGGATTGAACAGCGGCGG+CGG | + | chr8.3:57817002-57817021 | None:intergenic | 70.0% |
| !! | GGCGGCGGATTGAACAGCGG+CGG | + | chr8.3:57817005-57817024 | None:intergenic | 70.0% |
| ACGCAAACCGCCGCGCGGTG+CGG | - | chr8.3:57816690-57816709 | MS.gene88463:CDS | 75.0% | |
| CGCGTCGAGAACACCGCGCG+TGG | + | chr8.3:57816942-57816961 | None:intergenic | 75.0% | |
| TTGAACAGCGGCGGCGGCGG+AGG | + | chr8.3:57816996-57817015 | None:intergenic | 75.0% | |
| ! | CTAGCGTCCGCACCGCGCGG+CGG | + | chr8.3:57816700-57816719 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 57816686 | 57818626 | 57816686 | ID=MS.gene88463 |
| chr8.3 | mRNA | 57816686 | 57818626 | 57816686 | ID=MS.gene88463.t1;Parent=MS.gene88463 |
| chr8.3 | exon | 57818009 | 57818626 | 57818009 | ID=MS.gene88463.t1.exon1;Parent=MS.gene88463.t1 |
| chr8.3 | CDS | 57818009 | 57818626 | 57818009 | ID=cds.MS.gene88463.t1;Parent=MS.gene88463.t1 |
| chr8.3 | exon | 57816686 | 57817087 | 57816686 | ID=MS.gene88463.t1.exon2;Parent=MS.gene88463.t1 |
| chr8.3 | CDS | 57816686 | 57817087 | 57816686 | ID=cds.MS.gene88463.t1;Parent=MS.gene88463.t1 |
| Gene Sequence |
| Protein sequence |
