AlfalfaGEDB | MS.gene88512

M. sativa cultivar XinJiangDaYe / MS.gene88512

KEGG: K17479
GO: GO:0003674 GO:0003824 GO:0008150 GO:0009055 GO:0009987 GO:0015035 GO:0015036 GO:0016491 GO:0016667 GO:0019725 GO:0042592 GO:0045454 GO:0050789 GO:0050794 GO:0065007 GO:0065008
PFAM: PF00462.27

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene88512.t1	XP_003627800.1	83.7	258	41	1	1	258	1	257	2.70E-118	434.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene88512.t1	Q9FLE8	47.0	166	73	4	106	256	224	389	2.7e-34	147.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene88512.t1	Q1RU64	83.7	258	41	1	1	258	1	257	1.9e-118	434.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050646	MS.gene88512	0.813691	2.25E-51	-1.69E-46
MS.gene051066	MS.gene88512	0.806644	7.44E-50	-1.69E-46
MS.gene053272	MS.gene88512	-0.808316	3.29E-50	-1.69E-46
MS.gene05458	MS.gene88512	0.809943	1.47E-50	-1.69E-46
MS.gene056045	MS.gene88512	0.82959	4.73E-55	-1.69E-46
MS.gene056973	MS.gene88512	0.83004	3.67E-55	-1.69E-46
MS.gene058781	MS.gene88512	0.810754	9.85E-51	-1.69E-46
MS.gene060527	MS.gene88512	0.834721	2.54E-56	-1.69E-46
MS.gene060777	MS.gene88512	0.821356	4.22E-53	-1.69E-46
MS.gene060933	MS.gene88512	0.820114	8.14E-53	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene88512.t1	MTR_8g038440	92.248	258	19	1	1	258	1	257	1.90e-164	455
MS.gene88512.t1	MTR_3g017490	54.340	265	98	5	14	258	2	263	9.35e-87	259
MS.gene88512.t1	MTR_7g090230	67.742	155	48	1	102	256	273	425	1.88e-71	225
MS.gene88512.t1	MTR_1g051180	64.024	164	47	2	102	256	204	364	1.07e-68	216
MS.gene88512.t1	MTR_5g083110	46.766	201	92	6	60	255	48	238	2.81e-48	160
MS.gene88512.t1	MTR_3g465550	52.667	150	67	3	102	251	83	228	8.45e-48	158
MS.gene88512.t1	MTR_5g072400	48.077	156	76	3	100	255	103	253	1.12e-42	146
MS.gene88512.t1	MTR_7g106500	46.914	162	74	3	103	256	122	279	2.06e-42	146
MS.gene88512.t1	MTR_7g104720	45.402	174	84	3	89	256	237	405	1.35e-41	147
MS.gene88512.t1	MTR_7g010090	43.602	211	91	7	65	256	231	432	6.17e-39	140

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene88512.t1	AT5G13810	56.078	255	90	6	18	255	23	272	2.33e-87	261
MS.gene88512.t1	AT3G57070	61.146	157	60	1	101	257	262	417	6.71e-61	197
MS.gene88512.t1	AT2G41330	60.526	152	58	1	106	257	253	402	1.10e-56	186
MS.gene88512.t1	AT5G58530	50.000	162	73	3	100	255	106	265	2.17e-47	159
MS.gene88512.t1	AT3G28850	45.506	178	70	3	106	256	250	427	4.13e-39	141
MS.gene88512.t1	AT5G39865	47.619	168	69	5	106	256	224	389	7.66e-39	139
MS.gene88512.t1	AT5G06470	43.125	160	78	3	103	255	85	238	7.21e-37	130
MS.gene88512.t1	AT4G10630	40.933	193	98	5	78	255	142	333	8.44e-37	133
MS.gene88512.t1	AT1G32760	47.436	156	78	2	104	255	158	313	2.93e-36	131
MS.gene88512.t1	AT5G03870	38.767	227	127	4	35	255	163	383	8.28e-36	131

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Find 0 sgRNAs with CRISPR-Local

Find 78 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACATACGAGGATTGTTATG+CGG	-	57247:25393-25412	MS.gene88512:CDS	35.0%
AAGGAATTGATGAGTGTGAT+GGG	-	57247:25487-25506	MS.gene88512:CDS	35.0%
AGGATGAAGGGTTAATGAAT+AGG	-	57247:25728-25747	MS.gene88512:CDS	35.0%
AGGGTTAATGAATAGGTGTT+TGG	-	57247:25735-25754	MS.gene88512:CDS	35.0%
GAAATCGATTGATTATGCAC+CGG	-	57247:25303-25322	MS.gene88512:CDS	35.0%
GTACCGGGTAATTTAATAAC+CGG	+	57247:25325-25344	None:intergenic	35.0%
ACAATTCGATCTTCTGTACC+GGG	+	57247:25340-25359	None:intergenic	40.0%
AGATACAACAATTCGGACAC+CGG	+	57247:25783-25802	None:intergenic	40.0%
AGTGATCGTTCTTCATGAGA+TGG	+	57247:25223-25242	None:intergenic	40.0%
CACAATTCGATCTTCTGTAC+CGG	+	57247:25341-25360	None:intergenic	40.0%

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Chromosome	Type	Strat	End	Strand	Name
57247	gene	25031	25807	25031	ID=MS.gene88512
57247	mRNA	25031	25807	25031	ID=MS.gene88512.t1;Parent=MS.gene88512
57247	exon	25031	25807	25031	ID=MS.gene88512.t1.exon1;Parent=MS.gene88512.t1
57247	CDS	25031	25807	25031	ID=cds.MS.gene88512.t1;Parent=MS.gene88512.t1

Gene Sequence

>MS.gene88512

ATGGAAGAAATCAGAAACAACAACAACAATACGACGTCGTCTAGGTCTTCATTCCTCAACCGTTCTTTCACATCGGTTCGTACAAACCACGATGAAAAACCGCCACAAAAAACCCAAAACCTCGAACGCACCGTTTCGCTTCGCGGCAATGTTGTTAAAAAGCTCTGTAGTGTCTTCGAACCACCAAAACCATCTCATGAAGAACGATCACTTTTCAAATCAAAAACCCTAAAATCAACAGAATCAACATCGGATTCATCCTTAAAATCATCGAAATCGATTGATTATGCACCGGTTATTAAATTACCCGGTACAGAAGATCGAATTGTGGTCTATTTCACGAGTTTACGTGGAATTAGACGAACATACGAGGATTGTTATGCGGTTAGGATGATTTTGAGAGGTTTTAGGGTTTGGGTTGACGAGCGAGATGTTTCAATGGATATTTGTTATAGGAAGGAATTGATGAGTGTGATGGGTGAGAAGAGTATGAAGAATGTGACGTTGCCGCAGGTTTTTATCCGAGGGAATCATGTGGGTGGTGCTGAGGTGATAAAGCAGCTTTGTGAGGTTGGTGAATTGGGGAAGATTTTGGAGGGGTTTCCGAAGACAAAAGGTGGGTATGTTTGTGAGAGCTGTGGTGATGTTAGGTTTTTGCCGTGTGGGAATTGTTGTGGGAGTAGGAAGGTTTTTGATGAGGATGAAGGGTTAATGAATAGGTGTTTGGATTGTAATGAAAATGGATTGATCCGGTGTCCGAATTGTTGTATCTCTTGA

Protein sequence

>MS.gene88512.t1

MEEIRNNNNNTTSSRSSFLNRSFTSVRTNHDEKPPQKTQNLERTVSLRGNVVKKLCSVFEPPKPSHEERSLFKSKTLKSTESTSDSSLKSSKSIDYAPVIKLPGTEDRIVVYFTSLRGIRRTYEDCYAVRMILRGFRVWVDERDVSMDICYRKELMSVMGEKSMKNVTLPQVFIRGNHVGGAEVIKQLCEVGELGKILEGFPKTKGGYVCESCGDVRFLPCGNCCGSRKVFDEDEGLMNRCLDCNENGLIRCPNCCIS