AlfalfaGEDB | MS.gene88512

M. sativa cultivar XinJiangDaYe / MS.gene88512

KEGG: K17479
GO: GO:0003674 GO:0003824 GO:0008150 GO:0009055 GO:0009987 GO:0015035 GO:0015036 GO:0016491 GO:0016667 GO:0019725 GO:0042592 GO:0045454 GO:0050789 GO:0050794 GO:0065007 GO:0065008
PFAM: PF00462.27

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene88512.t1	XP_003627800.1	83.7	258	41	1	1	258	1	257	2.70E-118	434.9

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene88512.t1	Q9FLE8	47.0	166	73	4	106	256	224	389	2.7e-34	147.1

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene88512.t1	Q1RU64	83.7	258	41	1	1	258	1	257	1.9e-118	434.9

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050646	MS.gene88512	0.813691	2.25E-51	-1.69E-46
MS.gene051066	MS.gene88512	0.806644	7.44E-50	-1.69E-46
MS.gene053272	MS.gene88512	-0.808316	3.29E-50	-1.69E-46
MS.gene05458	MS.gene88512	0.809943	1.47E-50	-1.69E-46
MS.gene056045	MS.gene88512	0.82959	4.73E-55	-1.69E-46
MS.gene056973	MS.gene88512	0.83004	3.67E-55	-1.69E-46
MS.gene058781	MS.gene88512	0.810754	9.85E-51	-1.69E-46
MS.gene060527	MS.gene88512	0.834721	2.54E-56	-1.69E-46
MS.gene060777	MS.gene88512	0.821356	4.22E-53	-1.69E-46
MS.gene060933	MS.gene88512	0.820114	8.14E-53	-1.69E-46
MS.gene060935	MS.gene88512	0.819896	9.13E-53	-1.69E-46
MS.gene060937	MS.gene88512	0.831179	1.93E-55	-1.69E-46
MS.gene061100	MS.gene88512	0.808617	2.84E-50	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene88512.t1	MTR_8g038440	92.248	258	19	1	1	258	1	257	1.90e-164	455
MS.gene88512.t1	MTR_3g017490	54.340	265	98	5	14	258	2	263	9.35e-87	259
MS.gene88512.t1	MTR_7g090230	67.742	155	48	1	102	256	273	425	1.88e-71	225
MS.gene88512.t1	MTR_1g051180	64.024	164	47	2	102	256	204	364	1.07e-68	216
MS.gene88512.t1	MTR_5g083110	46.766	201	92	6	60	255	48	238	2.81e-48	160
MS.gene88512.t1	MTR_3g465550	52.667	150	67	3	102	251	83	228	8.45e-48	158
MS.gene88512.t1	MTR_5g072400	48.077	156	76	3	100	255	103	253	1.12e-42	146
MS.gene88512.t1	MTR_7g106500	46.914	162	74	3	103	256	122	279	2.06e-42	146
MS.gene88512.t1	MTR_7g104720	45.402	174	84	3	89	256	237	405	1.35e-41	147
MS.gene88512.t1	MTR_7g010090	43.602	211	91	7	65	256	231	432	6.17e-39	140
MS.gene88512.t1	MTR_1g090400	45.098	153	79	2	103	255	221	368	1.13e-38	138
MS.gene88512.t1	MTR_3g071510	47.468	158	76	4	100	255	82	234	5.63e-38	133
MS.gene88512.t1	MTR_6g011640	37.900	219	112	7	54	257	189	398	1.62e-35	130
MS.gene88512.t1	MTR_8g106900	45.570	158	78	3	103	255	119	273	1.73e-33	122
MS.gene88512.t1	MTR_8g099665	40.764	157	89	2	103	255	211	367	1.09e-32	122
MS.gene88512.t1	MTR_3g030520	41.250	160	79	3	113	257	141	300	1.19e-26	105
MS.gene88512.t1	MTR_5g048870	43.373	83	47	0	106	188	68	150	7.21e-15	70.5
MS.gene88512.t1	MTR_1g095960	35.165	91	51	2	151	235	32	120	3.73e-11	59.7

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene88512.t1	AT5G13810	56.078	255	90	6	18	255	23	272	2.33e-87	261
MS.gene88512.t1	AT3G57070	61.146	157	60	1	101	257	262	417	6.71e-61	197
MS.gene88512.t1	AT2G41330	60.526	152	58	1	106	257	253	402	1.10e-56	186
MS.gene88512.t1	AT5G58530	50.000	162	73	3	100	255	106	265	2.17e-47	159
MS.gene88512.t1	AT3G28850	45.506	178	70	3	106	256	250	427	4.13e-39	141
MS.gene88512.t1	AT5G39865	47.619	168	69	5	106	256	224	389	7.66e-39	139
MS.gene88512.t1	AT5G06470	43.125	160	78	3	103	255	85	238	7.21e-37	130
MS.gene88512.t1	AT4G10630	40.933	193	98	5	78	255	142	333	8.44e-37	133
MS.gene88512.t1	AT1G32760	47.436	156	78	2	104	255	158	313	2.93e-36	131
MS.gene88512.t1	AT5G03870	38.767	227	127	4	35	255	163	383	8.28e-36	131
MS.gene88512.t1	AT1G64500	42.331	163	85	3	103	258	208	368	7.63e-34	125
MS.gene88512.t1	AT3G11773	42.953	149	78	4	108	255	7	149	6.87e-31	112
MS.gene88512.t1	AT5G01420	43.137	153	83	3	103	255	252	400	2.54e-30	117
MS.gene88512.t1	AT3G11773	42.982	114	59	3	142	255	92	199	6.24e-21	87.8

Find 0 sgRNAs with CRISPR-Local

Find 78 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	TTTCAATGGATATTTGTTAT+AGG	-	57247:25464-25483	MS.gene88512:CDS	20.0%
!	AAAATCAACAGAATCAACAT+CGG	-	57247:25261-25280	MS.gene88512:CDS	25.0%
!	TGTTTGGATTGTAATGAAAA+TGG	-	57247:25751-25770	MS.gene88512:CDS	25.0%
!!!	AATCGATTTCGATGATTTTA+AGG	+	57247:25293-25312	None:intergenic	25.0%
!!!	AATGGATATTTGTTATAGGA+AGG	-	57247:25468-25487	MS.gene88512:CDS	25.0%
!!!	ATGTTGATTCTGTTGATTTT+AGG	+	57247:25261-25280	None:intergenic	25.0%
!!!	TGTTGATTCTGTTGATTTTA+GGG	+	57247:25260-25279	None:intergenic	25.0%
!!	GATGATTTTGAGAGGTTTTA+GGG	-	57247:25420-25439	MS.gene88512:CDS	30.0%
!!	GTAATGAAAATGGATTGATC+CGG	-	57247:25761-25780	MS.gene88512:CDS	30.0%
	AACATACGAGGATTGTTATG+CGG	-	57247:25393-25412	MS.gene88512:CDS	35.0%
	AAGGAATTGATGAGTGTGAT+GGG	-	57247:25487-25506	MS.gene88512:CDS	35.0%
	AGGATGAAGGGTTAATGAAT+AGG	-	57247:25728-25747	MS.gene88512:CDS	35.0%
	AGGGTTAATGAATAGGTGTT+TGG	-	57247:25735-25754	MS.gene88512:CDS	35.0%
	GAAATCGATTGATTATGCAC+CGG	-	57247:25303-25322	MS.gene88512:CDS	35.0%
	GTACCGGGTAATTTAATAAC+CGG	+	57247:25325-25344	None:intergenic	35.0%
!	AAGGTTTTTGATGAGGATGA+AGG	-	57247:25715-25734	MS.gene88512:CDS	35.0%
!	AGGTTTTTGATGAGGATGAA+GGG	-	57247:25716-25735	MS.gene88512:CDS	35.0%
!!	GGATGATTTTGAGAGGTTTT+AGG	-	57247:25419-25438	MS.gene88512:CDS	35.0%
!!!	TTTGAGAGGTTTTAGGGTTT+GGG	-	57247:25426-25445	MS.gene88512:CDS	35.0%
!!!	TTTTGAGAGGTTTTAGGGTT+TGG	-	57247:25425-25444	MS.gene88512:CDS	35.0%
	ACAATTCGATCTTCTGTACC+GGG	+	57247:25340-25359	None:intergenic	40.0%
	AGATACAACAATTCGGACAC+CGG	+	57247:25783-25802	None:intergenic	40.0%
	AGTGATCGTTCTTCATGAGA+TGG	+	57247:25223-25242	None:intergenic	40.0%
	CACAATTCGATCTTCTGTAC+CGG	+	57247:25341-25360	None:intergenic	40.0%
	GAAGGAATTGATGAGTGTGA+TGG	-	57247:25486-25505	MS.gene88512:CDS	40.0%
	GTCTATTTCACGAGTTTACG+TGG	-	57247:25361-25380	MS.gene88512:CDS	40.0%
	TACGAACCGATGTGAAAGAA+CGG	+	57247:25093-25112	None:intergenic	40.0%
	TGGAATTAGACGAACATACG+AGG	-	57247:25381-25400	MS.gene88512:CDS	40.0%
	TTTATCCGAGGGAATCATGT+GGG	-	57247:25547-25566	MS.gene88512:CDS	40.0%
!	ACATACCCACCTTTTGTCTT+CGG	+	57247:25637-25656	None:intergenic	40.0%
!	ATAAAGCAGCTTTGTGAGGT+TGG	-	57247:25583-25602	MS.gene88512:CDS	40.0%
!	ATGTTAGGTTTTTGCCGTGT+GGG	-	57247:25674-25693	MS.gene88512:CDS	40.0%
!	CGTTCTTCATGAGATGGTTT+TGG	+	57247:25217-25236	None:intergenic	40.0%
!	GAATTGGGGAAGATTTTGGA+GGG	-	57247:25607-25626	MS.gene88512:CDS	40.0%
!	GAGTAGGAAGGTTTTTGATG+AGG	-	57247:25708-25727	MS.gene88512:CDS	40.0%
!	TGAATTGGGGAAGATTTTGG+AGG	-	57247:25606-25625	MS.gene88512:CDS	40.0%
!	TGGTGAATTGGGGAAGATTT+TGG	-	57247:25603-25622	MS.gene88512:CDS	40.0%
!	TTTTATCCGAGGGAATCATG+TGG	-	57247:25546-25565	MS.gene88512:CDS	40.0%
!!	AATTGGGGAAGATTTTGGAG+GGG	-	57247:25608-25627	MS.gene88512:CDS	40.0%
!!	CTTTGTGAGGTTGGTGAATT+GGG	-	57247:25592-25611	MS.gene88512:CDS	40.0%
!!	GCACCGGTTATTAAATTACC+CGG	-	57247:25319-25338	MS.gene88512:CDS	40.0%
!!	TTTGTGAGGTTGGTGAATTG+GGG	-	57247:25593-25612	MS.gene88512:CDS	40.0%
!!!	AGGTTTTGGGTTTTTTGTGG+CGG	+	57247:25133-25152	None:intergenic	40.0%
!!!	TCGAGGTTTTGGGTTTTTTG+TGG	+	57247:25136-25155	None:intergenic	40.0%
!!!	TCTTCATGAGATGGTTTTGG+TGG	+	57247:25214-25233	None:intergenic	40.0%
	ACAACAATACGACGTCGTCT+AGG	-	57247:25053-25072	MS.gene88512:CDS	45.0%
	ACGAGGATTGTTATGCGGTT+AGG	-	57247:25398-25417	MS.gene88512:CDS	45.0%
	CCTCAACCGTTCTTTCACAT+CGG	-	57247:25084-25103	MS.gene88512:CDS	45.0%
	CGGTACAGAAGATCGAATTG+TGG	-	57247:25339-25358	MS.gene88512:CDS	45.0%
	GAATTGTTGTGGGAGTAGGA+AGG	-	57247:25696-25715	MS.gene88512:CDS	45.0%
	GGTTTCCGAAGACAAAAGGT+GGG	-	57247:25629-25648	MS.gene88512:CDS	45.0%
	TGACGAGCGAGATGTTTCAA+TGG	-	57247:25450-25469	MS.gene88512:CDS	45.0%
	TTCCCTCGGATAAAAACCTG+CGG	+	57247:25541-25560	None:intergenic	45.0%
!	GATGTTAGGTTTTTGCCGTG+TGG	-	57247:25673-25692	MS.gene88512:CDS	45.0%
!	GCGGTTAGGATGATTTTGAG+AGG	-	57247:25412-25431	MS.gene88512:CDS	45.0%
!	GGTGATAAAGCAGCTTTGTG+AGG	-	57247:25579-25598	MS.gene88512:CDS	45.0%
!	TTTGTGGCGGTTTTTCATCG+TGG	+	57247:25120-25139	None:intergenic	45.0%
!!	GCTTTGTGAGGTTGGTGAAT+TGG	-	57247:25591-25610	MS.gene88512:CDS	45.0%
	AACATTGCCGCGAAGCGAAA+CGG	+	57247:25164-25183	None:intergenic	50.0%
	CCGATGTGAAAGAACGGTTG+AGG	+	57247:25087-25106	None:intergenic	50.0%
	CTCCCACAACAATTCCCACA+CGG	+	57247:25691-25710	None:intergenic	50.0%
	GAGGGGTTTCCGAAGACAAA+AGG	-	57247:25625-25644	MS.gene88512:CDS	50.0%
	GGGTATGTTTGTGAGAGCTG+TGG	-	57247:25649-25668	MS.gene88512:CDS	50.0%
	GGGTTTCCGAAGACAAAAGG+TGG	-	57247:25628-25647	MS.gene88512:CDS	50.0%
	GTGGGAATTGTTGTGGGAGT+AGG	-	57247:25692-25711	MS.gene88512:CDS	50.0%
	TGCCGTGTGGGAATTGTTGT+GGG	-	57247:25686-25705	MS.gene88512:CDS	50.0%
	TTGCCGTGTGGGAATTGTTG+TGG	-	57247:25685-25704	MS.gene88512:CDS	50.0%
!	AAACGGTGCGTTCGAGGTTT+TGG	+	57247:25147-25166	None:intergenic	50.0%
!	AACGGTGCGTTCGAGGTTTT+GGG	+	57247:25146-25165	None:intergenic	50.0%
!	GTGAGAGCTGTGGTGATGTT+AGG	-	57247:25659-25678	MS.gene88512:CDS	50.0%
!	TGCCGCAGGTTTTTATCCGA+GGG	-	57247:25536-25555	MS.gene88512:CDS	50.0%
!	TTGCCGCAGGTTTTTATCCG+AGG	-	57247:25535-25554	MS.gene88512:CDS	50.0%
	ATCCGAGGGAATCATGTGGG+TGG	-	57247:25550-25569	MS.gene88512:CDS	55.0%
	CACCACCCACATGATTCCCT+CGG	+	57247:25555-25574	None:intergenic	55.0%
	GAAGAATGTGACGTTGCCGC+AGG	-	57247:25522-25541	MS.gene88512:CDS	55.0%
!	GAATCATGTGGGTGGTGCTG+AGG	-	57247:25558-25577	MS.gene88512:CDS	55.0%
	GAACGCACCGTTTCGCTTCG+CGG	-	57247:25154-25173	MS.gene88512:CDS	60.0%
	GAAGCGAAACGGTGCGTTCG+AGG	+	57247:25153-25172	None:intergenic	60.0%

Chromosome	Type	Strat	End	Strand	Name
57247	gene	25031	25807	25031	ID=MS.gene88512
57247	mRNA	25031	25807	25031	ID=MS.gene88512.t1;Parent=MS.gene88512
57247	exon	25031	25807	25031	ID=MS.gene88512.t1.exon1;Parent=MS.gene88512.t1
57247	CDS	25031	25807	25031	ID=cds.MS.gene88512.t1;Parent=MS.gene88512.t1

Gene Sequence

>MS.gene88512

ATGGAAGAAATCAGAAACAACAACAACAATACGACGTCGTCTAGGTCTTCATTCCTCAACCGTTCTTTCACATCGGTTCGTACAAACCACGATGAAAAACCGCCACAAAAAACCCAAAACCTCGAACGCACCGTTTCGCTTCGCGGCAATGTTGTTAAAAAGCTCTGTAGTGTCTTCGAACCACCAAAACCATCTCATGAAGAACGATCACTTTTCAAATCAAAAACCCTAAAATCAACAGAATCAACATCGGATTCATCCTTAAAATCATCGAAATCGATTGATTATGCACCGGTTATTAAATTACCCGGTACAGAAGATCGAATTGTGGTCTATTTCACGAGTTTACGTGGAATTAGACGAACATACGAGGATTGTTATGCGGTTAGGATGATTTTGAGAGGTTTTAGGGTTTGGGTTGACGAGCGAGATGTTTCAATGGATATTTGTTATAGGAAGGAATTGATGAGTGTGATGGGTGAGAAGAGTATGAAGAATGTGACGTTGCCGCAGGTTTTTATCCGAGGGAATCATGTGGGTGGTGCTGAGGTGATAAAGCAGCTTTGTGAGGTTGGTGAATTGGGGAAGATTTTGGAGGGGTTTCCGAAGACAAAAGGTGGGTATGTTTGTGAGAGCTGTGGTGATGTTAGGTTTTTGCCGTGTGGGAATTGTTGTGGGAGTAGGAAGGTTTTTGATGAGGATGAAGGGTTAATGAATAGGTGTTTGGATTGTAATGAAAATGGATTGATCCGGTGTCCGAATTGTTGTATCTCTTGA

Protein sequence

>MS.gene88512.t1

MEEIRNNNNNTTSSRSSFLNRSFTSVRTNHDEKPPQKTQNLERTVSLRGNVVKKLCSVFEPPKPSHEERSLFKSKTLKSTESTSDSSLKSSKSIDYAPVIKLPGTEDRIVVYFTSLRGIRRTYEDCYAVRMILRGFRVWVDERDVSMDICYRKELMSVMGEKSMKNVTLPQVFIRGNHVGGAEVIKQLCEVGELGKILEGFPKTKGGYVCESCGDVRFLPCGNCCGSRKVFDEDEGLMNRCLDCNENGLIRCPNCCIS