Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene88832.t1 | PPS11746.1 | 54.7 | 899 | 263 | 13 | 8 | 828 | 9 | 841 | 7.50E-253 | 883.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene88832.t1 | Q94F09 | 60.7 | 407 | 155 | 4 | 490 | 892 | 34 | 439 | 4.7e-139 | 496.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene88832.t1 | A0A2P5Y848 | 54.7 | 899 | 263 | 13 | 8 | 828 | 9 | 841 | 5.4e-253 | 883.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049254 | MS.gene88832 | 0.829676 | 4.51E-55 | -1.69E-46 |
MS.gene049977 | MS.gene88832 | 0.826616 | 2.46E-54 | -1.69E-46 |
MS.gene050156 | MS.gene88832 | 0.812654 | 3.80E-51 | -1.69E-46 |
MS.gene051147 | MS.gene88832 | 0.813677 | 2.27E-51 | -1.69E-46 |
MS.gene052447 | MS.gene88832 | 0.812503 | 4.10E-51 | -1.69E-46 |
MS.gene05415 | MS.gene88832 | 0.82197 | 3.04E-53 | -1.69E-46 |
MS.gene055818 | MS.gene88832 | 0.803017 | 4.26E-49 | -1.69E-46 |
MS.gene056174 | MS.gene88832 | 0.826705 | 2.34E-54 | -1.69E-46 |
MS.gene05686 | MS.gene88832 | 0.801948 | 7.08E-49 | -1.69E-46 |
MS.gene056873 | MS.gene88832 | 0.803379 | 3.58E-49 | -1.69E-46 |
MS.gene057444 | MS.gene88832 | 0.806508 | 7.95E-50 | -1.69E-46 |
MS.gene057855 | MS.gene88832 | 0.808107 | 3.64E-50 | -1.69E-46 |
MS.gene058979 | MS.gene88832 | 0.816322 | 5.87E-52 | -1.69E-46 |
MS.gene059272 | MS.gene88832 | 0.814184 | 1.75E-51 | -1.69E-46 |
MS.gene060167 | MS.gene88832 | 0.82102 | 5.04E-53 | -1.69E-46 |
MS.gene061091 | MS.gene88832 | 0.803361 | 3.62E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene88832.t1 | MTR_1g096810 | 87.452 | 518 | 36 | 3 | 1 | 490 | 1 | 517 | 0.0 | 902 |
MS.gene88832.t1 | MTR_1g096790 | 98.511 | 403 | 6 | 0 | 490 | 892 | 28 | 430 | 0.0 | 816 |
MS.gene88832.t1 | MTR_1g096870 | 79.919 | 493 | 79 | 8 | 1 | 490 | 57 | 532 | 0.0 | 768 |
MS.gene88832.t1 | MTR_3g088220 | 43.846 | 130 | 69 | 2 | 486 | 611 | 31 | 160 | 2.45e-27 | 117 |
MS.gene88832.t1 | MTR_2g094180 | 29.619 | 341 | 202 | 10 | 490 | 812 | 80 | 400 | 3.36e-21 | 99.0 |
MS.gene88832.t1 | MTR_1g087520 | 39.316 | 117 | 68 | 2 | 493 | 607 | 34 | 149 | 1.81e-20 | 94.7 |
MS.gene88832.t1 | MTR_4g059450 | 31.023 | 303 | 181 | 9 | 490 | 777 | 102 | 391 | 4.03e-18 | 89.4 |
MS.gene88832.t1 | MTR_7g112040 | 38.938 | 113 | 66 | 2 | 490 | 600 | 26 | 137 | 4.81e-18 | 87.4 |
MS.gene88832.t1 | MTR_7g112040 | 38.017 | 121 | 66 | 4 | 478 | 590 | 127 | 246 | 1.50e-15 | 79.7 |
MS.gene88832.t1 | MTR_5g084930 | 40.351 | 114 | 59 | 4 | 490 | 601 | 30 | 136 | 1.28e-16 | 84.0 |
MS.gene88832.t1 | MTR_5g084930 | 29.075 | 227 | 129 | 7 | 493 | 694 | 163 | 382 | 1.58e-14 | 77.4 |
MS.gene88832.t1 | MTR_4g080800 | 33.065 | 124 | 68 | 2 | 488 | 596 | 141 | 264 | 1.07e-13 | 75.1 |
MS.gene88832.t1 | MTR_1g098660 | 37.234 | 94 | 54 | 3 | 496 | 587 | 68 | 158 | 1.51e-13 | 70.1 |
MS.gene88832.t1 | MTR_2g021750 | 39.130 | 115 | 61 | 5 | 490 | 602 | 30 | 137 | 1.65e-13 | 73.6 |
MS.gene88832.t1 | MTR_2g101880 | 28.194 | 227 | 135 | 7 | 493 | 704 | 67 | 280 | 4.47e-13 | 73.2 |
MS.gene88832.t1 | MTR_2g083260 | 31.452 | 124 | 70 | 2 | 488 | 596 | 141 | 264 | 6.79e-12 | 69.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene88832.t1 | AT1G35620 | 60.688 | 407 | 155 | 4 | 490 | 892 | 34 | 439 | 2.08e-174 | 512 |
MS.gene88832.t1 | AT1G22660 | 52.047 | 513 | 212 | 9 | 2 | 492 | 74 | 574 | 1.20e-162 | 488 |
MS.gene88832.t1 | AT1G22660 | 52.157 | 510 | 210 | 9 | 2 | 489 | 79 | 576 | 3.21e-162 | 487 |
MS.gene88832.t1 | AT1G22660 | 52.157 | 510 | 210 | 9 | 2 | 489 | 74 | 571 | 4.25e-162 | 487 |
MS.gene88832.t1 | AT1G22660 | 52.092 | 478 | 196 | 8 | 2 | 458 | 79 | 544 | 9.43e-147 | 445 |
MS.gene88832.t1 | AT1G22660 | 52.092 | 478 | 196 | 8 | 2 | 458 | 74 | 539 | 1.17e-146 | 444 |
MS.gene88832.t1 | AT1G21750 | 46.847 | 111 | 55 | 2 | 486 | 592 | 28 | 138 | 5.56e-26 | 113 |
MS.gene88832.t1 | AT1G21750 | 46.847 | 111 | 55 | 2 | 486 | 592 | 28 | 138 | 6.13e-26 | 113 |
MS.gene88832.t1 | AT1G77510 | 34.199 | 231 | 121 | 9 | 486 | 699 | 27 | 243 | 9.66e-25 | 109 |
MS.gene88832.t1 | AT3G54960 | 27.869 | 305 | 200 | 8 | 484 | 777 | 95 | 390 | 1.11e-21 | 100 |
MS.gene88832.t1 | AT3G54960 | 27.869 | 305 | 200 | 8 | 484 | 777 | 95 | 390 | 2.60e-21 | 99.8 |
MS.gene88832.t1 | AT2G47470 | 40.000 | 110 | 63 | 2 | 493 | 600 | 28 | 136 | 2.26e-20 | 92.4 |
MS.gene88832.t1 | AT2G47470 | 34.109 | 129 | 76 | 4 | 470 | 590 | 118 | 245 | 3.75e-15 | 77.0 |
MS.gene88832.t1 | AT2G47470 | 40.000 | 110 | 63 | 2 | 493 | 600 | 28 | 136 | 4.33e-20 | 92.8 |
MS.gene88832.t1 | AT2G47470 | 34.109 | 129 | 76 | 4 | 470 | 590 | 118 | 245 | 4.37e-15 | 77.8 |
MS.gene88832.t1 | AT2G47470 | 40.000 | 110 | 63 | 2 | 493 | 600 | 28 | 136 | 5.11e-20 | 93.2 |
MS.gene88832.t1 | AT2G47470 | 34.109 | 129 | 76 | 4 | 470 | 590 | 118 | 245 | 4.69e-15 | 78.2 |
MS.gene88832.t1 | AT2G47470 | 40.000 | 110 | 63 | 2 | 493 | 600 | 28 | 136 | 5.32e-20 | 92.8 |
MS.gene88832.t1 | AT2G47470 | 34.109 | 129 | 76 | 4 | 470 | 590 | 118 | 245 | 4.82e-15 | 77.8 |
MS.gene88832.t1 | AT5G60640 | 27.517 | 298 | 198 | 7 | 490 | 777 | 105 | 394 | 8.89e-20 | 94.7 |
MS.gene88832.t1 | AT5G60640 | 27.517 | 298 | 198 | 7 | 490 | 777 | 105 | 394 | 1.29e-19 | 94.4 |
MS.gene88832.t1 | AT5G60640 | 39.806 | 103 | 60 | 1 | 490 | 592 | 105 | 205 | 3.18e-18 | 89.7 |
MS.gene88832.t1 | AT2G32920 | 38.095 | 105 | 60 | 3 | 490 | 592 | 32 | 133 | 3.63e-15 | 79.3 |
MS.gene88832.t1 | AT2G32920 | 27.434 | 226 | 132 | 7 | 493 | 693 | 167 | 385 | 1.13e-12 | 71.6 |
MS.gene88832.t1 | AT1G04980 | 27.753 | 227 | 132 | 6 | 493 | 694 | 172 | 391 | 8.91e-15 | 78.2 |
MS.gene88832.t1 | AT1G04980 | 38.235 | 102 | 58 | 3 | 490 | 589 | 34 | 132 | 1.79e-14 | 77.4 |
MS.gene88832.t1 | AT1G52260 | 28.205 | 234 | 133 | 8 | 506 | 714 | 95 | 318 | 3.70e-13 | 73.6 |
MS.gene88832.t1 | AT3G16110 | 24.554 | 224 | 154 | 3 | 490 | 704 | 77 | 294 | 1.56e-12 | 71.6 |
MS.gene88832.t1 | AT1G76760 | 35.106 | 94 | 57 | 2 | 499 | 591 | 75 | 165 | 7.55e-12 | 65.1 |
MS.gene88832.t1 | AT1G43560 | 36.735 | 98 | 57 | 3 | 496 | 591 | 66 | 160 | 1.49e-11 | 64.3 |
Find 156 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCCACTAAATGAGTTCTTTA+TGG | 0.104563 | 1.1:+69607215 | None:intergenic |
GCAAATCGTGACTTAATATT+TGG | 0.148394 | 1.1:-69608584 | MS.gene88832:CDS |
TTCCCAGTATATATAGGTTT+TGG | 0.148916 | 1.1:-69611041 | MS.gene88832:CDS |
ACTTGGCGCATCTTCCTTAA+TGG | 0.207550 | 1.1:+69623947 | None:intergenic |
CAATAACTTAACAAGTTCTT+TGG | 0.226371 | 1.1:+69608622 | None:intergenic |
GCTCATTGTACAGTGGATTA+AGG | 0.240385 | 1.1:+69610889 | None:intergenic |
CATGGCTGTTTCCAGATGTT+TGG | 0.264489 | 1.1:+69623588 | None:intergenic |
GAGAATTCTATATTGAAATT+AGG | 0.273825 | 1.1:-69616711 | MS.gene88832:intron |
AACCCAAAACCTATATATAC+TGG | 0.277212 | 1.1:+69611038 | None:intergenic |
CATCCTTAGCTTTAAACTTA+AGG | 0.277781 | 1.1:+69618214 | None:intergenic |
CAGGCTTTGCATTTCTTACT+TGG | 0.278007 | 1.1:-69621040 | MS.gene88832:CDS |
ATGAAGGTTCTACAGCTTAA+AGG | 0.290334 | 1.1:-69615921 | MS.gene88832:CDS |
TAACAGGCCTTGAGAAAGTA+TGG | 0.307530 | 1.1:-69615977 | MS.gene88832:intron |
ACTCTAGACGAAGATCTAAA+AGG | 0.310095 | 1.1:-69622221 | MS.gene88832:CDS |
ATCCTTAGCTTTAAACTTAA+GGG | 0.310893 | 1.1:+69618215 | None:intergenic |
TTCTAATGTCGAAAGATCTA+TGG | 0.336526 | 1.1:+69607172 | None:intergenic |
GGAGGGATTTAACAATTAAC+AGG | 0.340752 | 1.1:-69623109 | MS.gene88832:intron |
TGAGCATGAACTTGTCATTT+CGG | 0.343659 | 1.1:-69621420 | MS.gene88832:CDS |
CGGTGGTTGGGTTCGCGATA+AGG | 0.349966 | 1.1:-69624165 | MS.gene88832:intron |
AGGTTGACTCTCCAAGTAAA+TGG | 0.353469 | 1.1:+69620998 | None:intergenic |
AAGCATTGAAGGAGAGGATC+AGG | 0.355842 | 1.1:-69607283 | MS.gene88832:CDS |
AAAACAAAATCTCATTCCTT+TGG | 0.358538 | 1.1:-69608738 | MS.gene88832:CDS |
TAGGTTGATCTAATGATATC+TGG | 0.363930 | 1.1:-69621512 | MS.gene88832:CDS |
AGAGTATTTGTTGTCCATTA+AGG | 0.365181 | 1.1:-69623961 | MS.gene88832:CDS |
TCACTATCTTTCCAGACTTA+AGG | 0.371981 | 1.1:+69622451 | None:intergenic |
CCCATGATTAAACAGCAAAA+TGG | 0.374127 | 1.1:+69611199 | None:intergenic |
GACTTAATATTTGGTTATGT+TGG | 0.399153 | 1.1:-69608575 | MS.gene88832:CDS |
CATCAGAGTCGCCGGTGGTT+GGG | 0.400539 | 1.1:-69624177 | MS.gene88832:CDS |
CATCAACTTAAGTGTCTCAT+AGG | 0.401128 | 1.1:+69608703 | None:intergenic |
GTTCTTCGAGCCATTCGATT+TGG | 0.401170 | 1.1:-69622384 | MS.gene88832:intron |
CTTCGATAAGATTCCTGCCT+TGG | 0.402929 | 1.1:-69610916 | MS.gene88832:CDS |
TTCCTGTCTCTTCTCGAGCC+CGG | 0.407394 | 1.1:-69617963 | MS.gene88832:CDS |
TAAAGGAGGGCCGCTTGTTA+AGG | 0.408420 | 1.1:-69615904 | MS.gene88832:CDS |
CTCATTGTACAGTGGATTAA+GGG | 0.409749 | 1.1:+69610890 | None:intergenic |
TCGAAACTTATCCATTTACT+TGG | 0.417191 | 1.1:-69621009 | MS.gene88832:CDS |
TTGATTCCTTATCTCGCATC+TGG | 0.419382 | 1.1:-69618036 | MS.gene88832:CDS |
TCTCGAGCCCGGGTAATAAC+AGG | 0.421245 | 1.1:-69617952 | MS.gene88832:intron |
AAGAACTTGTTAAGTTATTG+AGG | 0.421672 | 1.1:-69608619 | MS.gene88832:CDS |
AGGTAGCCTTTGGAGGTAAA+GGG | 0.423004 | 1.1:+69622427 | None:intergenic |
TTGATGCTTATTCAAACCTT+AGG | 0.423769 | 1.1:-69607117 | MS.gene88832:CDS |
GCCTGTACTTGCAGCCTTGA+AGG | 0.424459 | 1.1:-69611401 | MS.gene88832:CDS |
CACTGAGAAGTCCAAACATC+TGG | 0.427279 | 1.1:-69623599 | MS.gene88832:CDS |
GAAATAAACTAACCTTCAAA+TGG | 0.433269 | 1.1:+69610849 | None:intergenic |
ACATCAGAGTCGCCGGTGGT+TGG | 0.439059 | 1.1:-69624178 | MS.gene88832:CDS |
TGCAAGCATCAAATCTTGAT+TGG | 0.439627 | 1.1:-69618005 | MS.gene88832:CDS |
TAAAGAAGATGAGTATCTTT+CGG | 0.440421 | 1.1:-69608480 | MS.gene88832:intron |
CAAATCACTAAATTTCTAGA+AGG | 0.440849 | 1.1:-69607255 | MS.gene88832:CDS |
TCATCAAGAAAGGTAGCCTT+TGG | 0.440983 | 1.1:+69622417 | None:intergenic |
GTCCCTTAAGTTTAAAGCTA+AGG | 0.442147 | 1.1:-69618217 | MS.gene88832:CDS |
ATCATCTCCTTTACTACCTA+AGG | 0.442205 | 1.1:+69607101 | None:intergenic |
CCTTCTGAGGTAGAGCTGCT+TGG | 0.442414 | 1.1:+69607036 | None:intergenic |
ACAGCCATGATGCATTTGTT+TGG | 0.447840 | 1.1:-69623574 | MS.gene88832:CDS |
CCTGTCTAACAGCAAACGTT+TGG | 0.448108 | 1.1:-69623155 | MS.gene88832:intron |
TTCATCCTTCGATCACATCT+TGG | 0.449806 | 1.1:-69612300 | MS.gene88832:CDS |
TCCTTCAAGGCTGCAAGTAC+AGG | 0.452113 | 1.1:+69611400 | None:intergenic |
AGAACTTGTTAAGTTATTGA+GGG | 0.452218 | 1.1:-69608618 | MS.gene88832:CDS |
GGAATCTCAGACCTTAAGTC+TGG | 0.455277 | 1.1:-69622462 | MS.gene88832:CDS |
GTGCTCATTCTCAGTGTCAA+TGG | 0.457140 | 1.1:+69616773 | None:intergenic |
CTTGGTCCGCGATATTCAGT+TGG | 0.466847 | 1.1:+69611173 | None:intergenic |
AAGAGCAATATCAATGTCAT+TGG | 0.467256 | 1.1:+69624022 | None:intergenic |
AGAATGATGCGATTGACAAC+AGG | 0.467447 | 1.1:+69618243 | None:intergenic |
AAGGTAGCCTTTGGAGGTAA+AGG | 0.469713 | 1.1:+69622426 | None:intergenic |
TGGTTGATTTCTACGCTCCT+TGG | 0.470298 | 1.1:-69612280 | MS.gene88832:CDS |
ATTCAAACCTTAGGTAGTAA+AGG | 0.472205 | 1.1:-69607108 | MS.gene88832:CDS |
TTGGTCCGCGATATTCAGTT+GGG | 0.476722 | 1.1:+69611174 | None:intergenic |
AGCAGAATCTGAATCGAGAA+TGG | 0.476767 | 1.1:+69611097 | None:intergenic |
AATGAGTATAGGTTCCTTCA+AGG | 0.477797 | 1.1:+69611387 | None:intergenic |
TCCTGTCTCTTCTCGAGCCC+GGG | 0.484109 | 1.1:-69617962 | MS.gene88832:CDS |
ACCATAAAGAACTCATTTAG+TGG | 0.489496 | 1.1:-69607216 | MS.gene88832:CDS |
TAGATCTTTCGACATTAGAA+TGG | 0.490056 | 1.1:-69607169 | MS.gene88832:CDS |
ATATAAGTCATTGCTTTGAC+AGG | 0.491867 | 1.1:+69621482 | None:intergenic |
GATGTGATCGAAGGATGAAA+TGG | 0.493338 | 1.1:+69612304 | None:intergenic |
GAAAGAAAAGAGTATAAAGA+AGG | 0.494059 | 1.1:-69607012 | MS.gene88832:CDS |
GTTCGATTATTTCGCGAACA+TGG | 0.498815 | 1.1:+69624270 | None:intergenic |
GTCAATGGGATGTAATAGAA+TGG | 0.505816 | 1.1:+69616788 | None:intergenic |
TAACTCATCACTTACAGTAA+AGG | 0.506382 | 1.1:+69620978 | None:intergenic |
TTAAGTGTCTCATAGGATAC+AGG | 0.508310 | 1.1:+69608710 | None:intergenic |
ACAAGAATTTATATGACAAT+CGG | 0.509597 | 1.1:+69618061 | None:intergenic |
TGAAATGGCGGAATCGAAGT+TGG | 0.511617 | 1.1:+69612319 | None:intergenic |
AGTTCATTGATAGAAAAGTT+CGG | 0.512411 | 1.1:-69611011 | MS.gene88832:CDS |
AAGTCATTGCTTTGACAGGT+TGG | 0.514147 | 1.1:+69621486 | None:intergenic |
GTTGGTTCAGAAAGCATTGA+AGG | 0.515841 | 1.1:-69607294 | MS.gene88832:CDS |
ACAAGTAAATCAGCTTTCCT+TGG | 0.516496 | 1.1:+69611155 | None:intergenic |
TCCTCACCAGATGCGAGATA+AGG | 0.516952 | 1.1:+69618030 | None:intergenic |
TGCTCATTCTCAGTGTCAAT+GGG | 0.518454 | 1.1:+69616774 | None:intergenic |
AAACAGCAAAATGGTTGGAT+AGG | 0.519002 | 1.1:+69611208 | None:intergenic |
TGATTAAACAGCAAAATGGT+TGG | 0.523489 | 1.1:+69611203 | None:intergenic |
GAGAGTACCAAACCAAGAAA+AGG | 0.523714 | 1.1:-69607067 | MS.gene88832:CDS |
CTTTCAATAACATGAACACT+TGG | 0.524394 | 1.1:+69623930 | None:intergenic |
TTACGTCCCATACTTTCTCA+AGG | 0.532992 | 1.1:+69615970 | None:intergenic |
AACGTTTGGCACAGCTGAAG+AGG | 0.533316 | 1.1:-69623141 | MS.gene88832:CDS |
TAAAGCTAAGGATGCAGAAA+CGG | 0.535556 | 1.1:-69618205 | MS.gene88832:intron |
ACACTTCACCTGTTATTACC+CGG | 0.537798 | 1.1:+69617944 | None:intergenic |
TCAAGAAAGGTAGCCTTTGG+AGG | 0.542033 | 1.1:+69622420 | None:intergenic |
GGATTAAGGGAAACCAAGGC+AGG | 0.543644 | 1.1:+69610903 | None:intergenic |
CAGCTGAAGAGGATGCATAC+AGG | 0.544550 | 1.1:-69623130 | MS.gene88832:CDS |
GAAATGACAAGTTCATGCTC+AGG | 0.547241 | 1.1:+69621422 | None:intergenic |
GACGTAAAACCATTGCTCAA+TGG | 0.549065 | 1.1:-69615954 | MS.gene88832:CDS |
TTAGGTAGTAAAGGAGATGA+TGG | 0.552978 | 1.1:-69607099 | MS.gene88832:CDS |
TTCTGTCTTACAGTTAGATG+CGG | 0.553009 | 1.1:-69611428 | MS.gene88832:intron |
ATTGCTCTTGATCATATGAC+GGG | 0.554934 | 1.1:-69624008 | MS.gene88832:CDS |
AAGATATCTGTTTAATGCCG+TGG | 0.556378 | 1.1:-69616733 | MS.gene88832:CDS |
CAAGTGTTCATGTTATTGAA+AGG | 0.557723 | 1.1:-69623929 | MS.gene88832:intron |
CACTTCACCTGTTATTACCC+GGG | 0.558968 | 1.1:+69617945 | None:intergenic |
ATGGCTCGAAGAACTCGTAA+TGG | 0.559309 | 1.1:+69622393 | None:intergenic |
TTCAGAAAGCATTGAAGGAG+AGG | 0.562407 | 1.1:-69607289 | MS.gene88832:CDS |
AGAGCACATTGGAAGAAAGA+AGG | 0.564100 | 1.1:-69622114 | MS.gene88832:intron |
ACCCAAAACCTATATATACT+GGG | 0.565590 | 1.1:+69611039 | None:intergenic |
TTATGTTGGAGTTAAACAGC+TGG | 0.567225 | 1.1:-69608561 | MS.gene88832:CDS |
CAATGGCAAAGATGTTATGA+AGG | 0.569409 | 1.1:-69615937 | MS.gene88832:CDS |
AGTTGATGAAAGCTGATGGT+AGG | 0.573136 | 1.1:-69608688 | MS.gene88832:CDS |
GATTTCTACGCTCCTTGGTG+TGG | 0.573164 | 1.1:-69612275 | MS.gene88832:CDS |
CCAAGCAGCTCTACCTCAGA+AGG | 0.573325 | 1.1:-69607036 | MS.gene88832:CDS |
TCGTAATGGATCATCAAGAA+AGG | 0.573687 | 1.1:+69622407 | None:intergenic |
TATTGCTCTTGATCATATGA+CGG | 0.573900 | 1.1:-69624009 | MS.gene88832:CDS |
TGAGAATGAGCACTCACAGT+TGG | 0.574390 | 1.1:-69616763 | MS.gene88832:CDS |
ACCCGGGCTCGAGAAGAGAC+AGG | 0.575741 | 1.1:+69617961 | None:intergenic |
ACATCTTTGCCATTGAGCAA+TGG | 0.575889 | 1.1:+69615945 | None:intergenic |
TTATTCTATAATATCAACAC+TGG | 0.583059 | 1.1:-69622592 | MS.gene88832:CDS |
ATTAAAACTACCAAATCGAA+TGG | 0.584832 | 1.1:+69622374 | None:intergenic |
GATACCAAACAAATGCATCA+TGG | 0.590689 | 1.1:+69623570 | None:intergenic |
TAGGATACAGGCACAGCCAA+AGG | 0.591538 | 1.1:+69608722 | None:intergenic |
TCCTTATCTCGCATCTGGTG+AGG | 0.596574 | 1.1:-69618031 | MS.gene88832:CDS |
AGTGACCCCTTTACCTCCAA+AGG | 0.597062 | 1.1:-69622433 | MS.gene88832:CDS |
ATCAACCAAGATGTGATCGA+AGG | 0.597452 | 1.1:+69612295 | None:intergenic |
TGGATAAATTGCATCAGTGA+TGG | 0.598373 | 1.1:+69607192 | None:intergenic |
TCATTTCGGATGAATGTGAA+AGG | 0.599280 | 1.1:-69621406 | MS.gene88832:intron |
AAAACTGACATCAGAGTCGC+CGG | 0.602641 | 1.1:-69624185 | MS.gene88832:CDS |
CTTATCGCGAACCCAACCAC+CGG | 0.602971 | 1.1:+69624166 | None:intergenic |
GAGGGCCGCTTGTTAAGGAG+TGG | 0.607649 | 1.1:-69615899 | MS.gene88832:CDS |
AAGGTTCTACAGCTTAAAGG+AGG | 0.608193 | 1.1:-69615918 | MS.gene88832:CDS |
TTTCTAGAAGGATACAGAGA+AGG | 0.608440 | 1.1:-69607243 | MS.gene88832:CDS |
CTTAAGTTGATGAAAGCTGA+TGG | 0.612346 | 1.1:-69608692 | MS.gene88832:CDS |
TATCAGAGTGTGTATTCGAA+AGG | 0.613485 | 1.1:-69622153 | MS.gene88832:CDS |
GGTAGCCTTTGGAGGTAAAG+GGG | 0.617642 | 1.1:+69622428 | None:intergenic |
CCATAAAGAACTCATTTAGT+GGG | 0.620397 | 1.1:-69607215 | MS.gene88832:CDS |
AGCATTGAAGGAGAGGATCA+GGG | 0.623276 | 1.1:-69607282 | MS.gene88832:CDS |
CAACTGAATATCGCGGACCA+AGG | 0.627911 | 1.1:-69611172 | MS.gene88832:CDS |
CTGCAAGCGTCTCTCTCCTG+AGG | 0.631362 | 1.1:-69612249 | MS.gene88832:intron |
AGGGCCGCTTGTTAAGGAGT+GGG | 0.632505 | 1.1:-69615898 | MS.gene88832:intron |
AACAGGCCTTGAGAAAGTAT+GGG | 0.633357 | 1.1:-69615976 | MS.gene88832:intron |
CTTACCCACTCCTTAACAAG+CGG | 0.640610 | 1.1:+69615894 | None:intergenic |
TGTCTTACAGTTAGATGCGG+CGG | 0.642474 | 1.1:-69611425 | MS.gene88832:intron |
CAGTGGATTAAGGGAAACCA+AGG | 0.642707 | 1.1:+69610899 | None:intergenic |
CTGAAGAGGATGCATACAGG+AGG | 0.648364 | 1.1:-69623127 | MS.gene88832:CDS |
TTTCAATATAGAATTCTCCA+CGG | 0.653066 | 1.1:+69616716 | None:intergenic |
GTGATCGAAGGATGAAATGG+CGG | 0.654275 | 1.1:+69612307 | None:intergenic |
AAAATTAGCAGAGAGCACAT+TGG | 0.660100 | 1.1:-69622125 | MS.gene88832:CDS |
TTATAAGTGTTATTTCTGAG+TGG | 0.665154 | 1.1:+69620779 | None:intergenic |
TGAAGAGGATGCATACAGGA+GGG | 0.667017 | 1.1:-69623126 | MS.gene88832:CDS |
GTGTTACGCTCATTGTACAG+TGG | 0.669544 | 1.1:+69610882 | None:intergenic |
AGACGATTGCAACGTTCCTG+AGG | 0.674727 | 1.1:-69623509 | MS.gene88832:intron |
AGGTTCTACAGCTTAAAGGA+GGG | 0.682681 | 1.1:-69615917 | MS.gene88832:CDS |
CGCTTGCAGTGACCACACCA+AGG | 0.682818 | 1.1:+69612263 | None:intergenic |
GGGGTCCCAACTGAATATCG+CGG | 0.700525 | 1.1:-69611179 | MS.gene88832:CDS |
ACTGACATCAGAGTCGCCGG+TGG | 0.714693 | 1.1:-69624182 | MS.gene88832:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.1 | gene | 69606996 | 69624309 | 69606996 | ID=MS.gene88832 |
chr1.1 | mRNA | 69606996 | 69624309 | 69606996 | ID=MS.gene88832.t1;Parent=MS.gene88832 |
chr1.1 | exon | 69624166 | 69624309 | 69624166 | ID=MS.gene88832.t1.exon1;Parent=MS.gene88832.t1 |
chr1.1 | CDS | 69624166 | 69624309 | 69624166 | ID=cds.MS.gene88832.t1;Parent=MS.gene88832.t1 |
chr1.1 | exon | 69623930 | 69624060 | 69623930 | ID=MS.gene88832.t1.exon2;Parent=MS.gene88832.t1 |
chr1.1 | CDS | 69623930 | 69624060 | 69623930 | ID=cds.MS.gene88832.t1;Parent=MS.gene88832.t1 |
chr1.1 | exon | 69623510 | 69623624 | 69623510 | ID=MS.gene88832.t1.exon3;Parent=MS.gene88832.t1 |
chr1.1 | CDS | 69623510 | 69623624 | 69623510 | ID=cds.MS.gene88832.t1;Parent=MS.gene88832.t1 |
chr1.1 | exon | 69623110 | 69623165 | 69623110 | ID=MS.gene88832.t1.exon4;Parent=MS.gene88832.t1 |
chr1.1 | CDS | 69623110 | 69623165 | 69623110 | ID=cds.MS.gene88832.t1;Parent=MS.gene88832.t1 |
chr1.1 | exon | 69622566 | 69622615 | 69622566 | ID=MS.gene88832.t1.exon5;Parent=MS.gene88832.t1 |
chr1.1 | CDS | 69622566 | 69622615 | 69622566 | ID=cds.MS.gene88832.t1;Parent=MS.gene88832.t1 |
chr1.1 | exon | 69622385 | 69622483 | 69622385 | ID=MS.gene88832.t1.exon6;Parent=MS.gene88832.t1 |
chr1.1 | CDS | 69622385 | 69622483 | 69622385 | ID=cds.MS.gene88832.t1;Parent=MS.gene88832.t1 |
chr1.1 | exon | 69622115 | 69622260 | 69622115 | ID=MS.gene88832.t1.exon7;Parent=MS.gene88832.t1 |
chr1.1 | CDS | 69622115 | 69622260 | 69622115 | ID=cds.MS.gene88832.t1;Parent=MS.gene88832.t1 |
chr1.1 | exon | 69621407 | 69621531 | 69621407 | ID=MS.gene88832.t1.exon8;Parent=MS.gene88832.t1 |
chr1.1 | CDS | 69621407 | 69621531 | 69621407 | ID=cds.MS.gene88832.t1;Parent=MS.gene88832.t1 |
chr1.1 | exon | 69620993 | 69621059 | 69620993 | ID=MS.gene88832.t1.exon9;Parent=MS.gene88832.t1 |
chr1.1 | CDS | 69620993 | 69621059 | 69620993 | ID=cds.MS.gene88832.t1;Parent=MS.gene88832.t1 |
chr1.1 | exon | 69620763 | 69620843 | 69620763 | ID=MS.gene88832.t1.exon10;Parent=MS.gene88832.t1 |
chr1.1 | CDS | 69620763 | 69620843 | 69620763 | ID=cds.MS.gene88832.t1;Parent=MS.gene88832.t1 |
chr1.1 | exon | 69618206 | 69618268 | 69618206 | ID=MS.gene88832.t1.exon11;Parent=MS.gene88832.t1 |
chr1.1 | CDS | 69618206 | 69618268 | 69618206 | ID=cds.MS.gene88832.t1;Parent=MS.gene88832.t1 |
chr1.1 | exon | 69617953 | 69618097 | 69617953 | ID=MS.gene88832.t1.exon12;Parent=MS.gene88832.t1 |
chr1.1 | CDS | 69617953 | 69618097 | 69617953 | ID=cds.MS.gene88832.t1;Parent=MS.gene88832.t1 |
chr1.1 | exon | 69616712 | 69616861 | 69616712 | ID=MS.gene88832.t1.exon13;Parent=MS.gene88832.t1 |
chr1.1 | CDS | 69616712 | 69616861 | 69616712 | ID=cds.MS.gene88832.t1;Parent=MS.gene88832.t1 |
chr1.1 | exon | 69615899 | 69615993 | 69615899 | ID=MS.gene88832.t1.exon14;Parent=MS.gene88832.t1 |
chr1.1 | CDS | 69615899 | 69615993 | 69615899 | ID=cds.MS.gene88832.t1;Parent=MS.gene88832.t1 |
chr1.1 | exon | 69612250 | 69612360 | 69612250 | ID=MS.gene88832.t1.exon15;Parent=MS.gene88832.t1 |
chr1.1 | CDS | 69612250 | 69612360 | 69612250 | ID=cds.MS.gene88832.t1;Parent=MS.gene88832.t1 |
chr1.1 | exon | 69611334 | 69611437 | 69611334 | ID=MS.gene88832.t1.exon16;Parent=MS.gene88832.t1 |
chr1.1 | CDS | 69611334 | 69611437 | 69611334 | ID=cds.MS.gene88832.t1;Parent=MS.gene88832.t1 |
chr1.1 | exon | 69610862 | 69611232 | 69610862 | ID=MS.gene88832.t1.exon17;Parent=MS.gene88832.t1 |
chr1.1 | CDS | 69610862 | 69611232 | 69610862 | ID=cds.MS.gene88832.t1;Parent=MS.gene88832.t1 |
chr1.1 | exon | 69608481 | 69608782 | 69608481 | ID=MS.gene88832.t1.exon18;Parent=MS.gene88832.t1 |
chr1.1 | CDS | 69608481 | 69608782 | 69608481 | ID=cds.MS.gene88832.t1;Parent=MS.gene88832.t1 |
chr1.1 | exon | 69606996 | 69607319 | 69606996 | ID=MS.gene88832.t1.exon19;Parent=MS.gene88832.t1 |
chr1.1 | CDS | 69606996 | 69607319 | 69606996 | ID=cds.MS.gene88832.t1;Parent=MS.gene88832.t1 |
Gene Sequence |
Protein sequence |