Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89035.t1 | XP_003597881.1 | 94.4 | 179 | 7 | 2 | 1 | 177 | 1 | 178 | 1.80E-86 | 328.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89035.t1 | Q9SSR1 | 71.3 | 174 | 47 | 3 | 5 | 177 | 1 | 172 | 1.9e-63 | 243.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89035.t1 | Q2HUB7 | 94.4 | 179 | 7 | 2 | 1 | 177 | 1 | 178 | 1.3e-86 | 328.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050170 | MS.gene89035 | 0.830509 | 2.82E-55 | -1.69E-46 |
| MS.gene05470 | MS.gene89035 | 0.813244 | 2.82E-51 | -1.69E-46 |
| MS.gene055577 | MS.gene89035 | 0.802762 | 4.81E-49 | -1.69E-46 |
| MS.gene05589 | MS.gene89035 | 0.817774 | 2.77E-52 | -1.69E-46 |
| MS.gene056266 | MS.gene89035 | 0.857778 | 1.29E-62 | -1.69E-46 |
| MS.gene058838 | MS.gene89035 | 0.820512 | 6.60E-53 | -1.69E-46 |
| MS.gene059023 | MS.gene89035 | 0.818795 | 1.63E-52 | -1.69E-46 |
| MS.gene059837 | MS.gene89035 | 0.837676 | 4.52E-57 | -1.69E-46 |
| MS.gene06000 | MS.gene89035 | 0.801598 | 8.35E-49 | -1.69E-46 |
| MS.gene060982 | MS.gene89035 | 0.822291 | 2.56E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89035.t1 | MTR_2g103590 | 96.970 | 165 | 5 | 0 | 13 | 177 | 14 | 178 | 4.11e-118 | 332 |
| MS.gene89035.t1 | MTR_5g035310 | 32.075 | 159 | 103 | 4 | 19 | 175 | 41 | 196 | 3.74e-21 | 86.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89035.t1 | AT1G52590 | 71.264 | 174 | 47 | 3 | 5 | 177 | 1 | 172 | 2.36e-86 | 251 |
| MS.gene89035.t1 | AT1G24095 | 37.815 | 119 | 69 | 3 | 60 | 175 | 9 | 125 | 2.81e-21 | 85.1 |
| MS.gene89035.t1 | AT1G24095 | 37.815 | 119 | 69 | 3 | 60 | 175 | 75 | 191 | 5.65e-21 | 85.9 |
Find 29 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGCTTCCTGCTTGTAATAT+TGG | 0.197241 | 2.4:-1963962 | MS.gene89035:CDS |
| TTGTACTTGTTGAAAATAAT+AGG | 0.312862 | 2.4:-1961860 | MS.gene89035:intron |
| AGCTTCCTGCTTGTAATATT+GGG | 0.322079 | 2.4:-1963961 | MS.gene89035:CDS |
| CGACCCATCATGTTATTTGA+TGG | 0.340065 | 2.4:-1963812 | MS.gene89035:intron |
| CTCGAAGTGATAACGTGAAC+TGG | 0.384250 | 2.4:-1963871 | MS.gene89035:CDS |
| AGAGGCTGTGTTGAAGATAA+TGG | 0.394830 | 2.4:-1961343 | MS.gene89035:CDS |
| TTTACCATCAAATAACATGA+TGG | 0.459751 | 2.4:+1963808 | None:intergenic |
| CTGAAGAAGAAACGCTAGCT+GGG | 0.464095 | 2.4:+1961299 | None:intergenic |
| TCGATGACTGCAGATTTGTC+AGG | 0.465548 | 2.4:-1961183 | MS.gene89035:intron |
| CAGTTCACGTTATCACTTCG+AGG | 0.470003 | 2.4:+1963872 | None:intergenic |
| ACTGAAGAAGAAACGCTAGC+TGG | 0.477344 | 2.4:+1961298 | None:intergenic |
| AAGATGTTACTCAGGAGATC+AGG | 0.488992 | 2.4:-1961909 | MS.gene89035:CDS |
| ACATGATGGGTCGTTTGTCT+TGG | 0.498630 | 2.4:+1963822 | None:intergenic |
| GAAGCTCTTCAGAGTGAAGC+TGG | 0.523439 | 2.4:-1961933 | MS.gene89035:CDS |
| AAGAAACGCTAGCTGGGGAA+AGG | 0.536026 | 2.4:+1961305 | None:intergenic |
| ACAACACTTGAGATATCATC+AGG | 0.536992 | 2.4:+1961879 | None:intergenic |
| TGACAGAGTAGCGAAGGTTG+TGG | 0.554535 | 2.4:+1963898 | None:intergenic |
| TTACCATCAAATAACATGAT+GGG | 0.558391 | 2.4:+1963809 | None:intergenic |
| AGAAACGCTAGCTGGGGAAA+GGG | 0.564077 | 2.4:+1961306 | None:intergenic |
| CGATGACTGCAGATTTGTCA+GGG | 0.572274 | 2.4:-1961182 | MS.gene89035:intron |
| ACGCGCCCAATATTACAAGC+AGG | 0.579281 | 2.4:+1963956 | None:intergenic |
| GTGTGTAACTTGTGTAATGG+TGG | 0.594795 | 2.4:-1963691 | MS.gene89035:CDS |
| AAGCTGGCAAGATGTTACTC+AGG | 0.601546 | 2.4:-1961917 | MS.gene89035:CDS |
| AGGTTGTGACAGAGTAGCGA+AGG | 0.608840 | 2.4:+1963892 | None:intergenic |
| GGGGTGTGTAACTTGTGTAA+TGG | 0.614565 | 2.4:-1963694 | MS.gene89035:CDS |
| TGTTGCAAATAATCGTTACA+CGG | 0.624647 | 2.4:-1961143 | MS.gene89035:CDS |
| TAGATCATACATAAAGTCAG+AGG | 0.631939 | 2.4:-1961361 | MS.gene89035:CDS |
| TCGAAGTGATAACGTGAACT+GGG | 0.641991 | 2.4:-1963870 | MS.gene89035:CDS |
| TGAAGAAGAAACGCTAGCTG+GGG | 0.657670 | 2.4:+1961300 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAAAAATCTAATAAACAT+TGG | + | chr2.4:1961663-1961682 | None:intergenic | 10.0% |
| !!! | GTTATTTTTCAAATTATTAA+CGG | + | chr2.4:1962835-1962854 | None:intergenic | 10.0% |
| !! | AAATTCAACAACAAATTATT+TGG | + | chr2.4:1963070-1963089 | None:intergenic | 15.0% |
| !! | ATAAAACAACATTATAAAAG+TGG | + | chr2.4:1963857-1963876 | None:intergenic | 15.0% |
| !!! | TGTTTTATTCATATTTTGTT+GGG | - | chr2.4:1963112-1963131 | MS.gene89035:intron | 15.0% |
| !!! | TTATTTTCTCAAATTATCAT+CGG | - | chr2.4:1962365-1962384 | MS.gene89035:intron | 15.0% |
| !!! | TTATTTTCTCATATTATCAT+CGG | - | chr2.4:1962595-1962614 | MS.gene89035:intron | 15.0% |
| !! | ATTGAAAATACAAAGAAGAA+GGG | + | chr2.4:1961325-1961344 | None:intergenic | 20.0% |
| !! | TAATAACCTATGAAAACAAT+CGG | - | chr2.4:1963585-1963604 | MS.gene89035:intron | 20.0% |
| !! | TAATATGAAGCATAATCAAA+AGG | + | chr2.4:1961503-1961522 | None:intergenic | 20.0% |
| !!! | AGGAAATGTAAATTTTATCT+TGG | - | chr2.4:1963692-1963711 | MS.gene89035:CDS | 20.0% |
| !!! | ATTTGATTAGTTTACTTAGT+TGG | - | chr2.4:1961595-1961614 | MS.gene89035:intron | 20.0% |
| !!! | CTGTTTTATTCATATTTTGT+TGG | - | chr2.4:1963111-1963130 | MS.gene89035:intron | 20.0% |
| !!! | CTTTATTTTATCTTTGGTTA+TGG | - | chr2.4:1963609-1963628 | MS.gene89035:intron | 20.0% |
| !!! | TTGTACTTGTTGAAAATAAT+AGG | - | chr2.4:1963234-1963253 | MS.gene89035:intron | 20.0% |
| ! | AAATATATGGGTAACTATGT+AGG | - | chr2.4:1962500-1962519 | MS.gene89035:intron | 25.0% |
| ! | AGATTTGATCTTTAATTACG+TGG | - | chr2.4:1961981-1962000 | MS.gene89035:intron | 25.0% |
| ! | CATTGAAAATACAAAGAAGA+AGG | + | chr2.4:1961326-1961345 | None:intergenic | 25.0% |
| ! | CCTATAAAATATACTTACAG+AGG | + | chr2.4:1963827-1963846 | None:intergenic | 25.0% |
| ! | GTTACTAATCTGAAAATTTC+TGG | + | chr2.4:1963309-1963328 | None:intergenic | 25.0% |
| ! | TGAAAGAAAATCAAGGTTAA+TGG | + | chr2.4:1963008-1963027 | None:intergenic | 25.0% |
| ! | TTACCATCAAATAACATGAT+GGG | + | chr2.4:1961288-1961307 | None:intergenic | 25.0% |
| ! | TTTACCATCAAATAACATGA+TGG | + | chr2.4:1961289-1961308 | None:intergenic | 25.0% |
| ! | TTTATTGCTAAAGAGAAACA+AGG | - | chr2.4:1963872-1963891 | MS.gene89035:CDS | 25.0% |
| ! | TTTATTTAAACTCGATATCC+CGG | - | chr2.4:1961743-1961762 | MS.gene89035:intron | 25.0% |
| !! | CCTCTGTAAGTATATTTTAT+AGG | - | chr2.4:1963824-1963843 | MS.gene89035:CDS | 25.0% |
| !! | TATTCATATTTTGTTGGGAT+GGG | - | chr2.4:1963117-1963136 | MS.gene89035:intron | 25.0% |
| !! | TTATTCATATTTTGTTGGGA+TGG | - | chr2.4:1963116-1963135 | MS.gene89035:intron | 25.0% |
| !!! | ATCGGACTTTATTTTATCTT+TGG | - | chr2.4:1963603-1963622 | MS.gene89035:intron | 25.0% |
| !!! | ATTGAAATTTTAACAGAACG+AGG | + | chr2.4:1963396-1963415 | None:intergenic | 25.0% |
| !!! | TACTTAGTTGGTTTGTTTTA+TGG | - | chr2.4:1961607-1961626 | MS.gene89035:intron | 25.0% |
| !!! | TGTAAATTTTATCTTGGTGT+TGG | - | chr2.4:1963698-1963717 | MS.gene89035:intron | 25.0% |
| !!! | TTTGATGATTTTGACATACA+GGG | - | chr2.4:1961380-1961399 | MS.gene89035:intron | 25.0% |
| !!! | TTTTGATGATTTTGACATAC+AGG | - | chr2.4:1961379-1961398 | MS.gene89035:intron | 25.0% |
| AACGATGTGAAAGAAAATCA+AGG | + | chr2.4:1963015-1963034 | None:intergenic | 30.0% | |
| AATCAGCTGAAAACAACTTA+TGG | + | chr2.4:1963550-1963569 | None:intergenic | 30.0% | |
| ACATTAAGAGGAATCAAACT+CGG | - | chr2.4:1961866-1961885 | MS.gene89035:CDS | 30.0% | |
| ATTTCCTCTTTACTCACAAA+AGG | + | chr2.4:1963679-1963698 | None:intergenic | 30.0% | |
| CCAACTCAATGCAAATATAT+GGG | - | chr2.4:1962488-1962507 | MS.gene89035:intron | 30.0% | |
| CCAAGTCAATGCAAATATAT+GGG | - | chr2.4:1962718-1962737 | MS.gene89035:intron | 30.0% | |
| CCTCTTAATGTCAATTTGAT+GGG | + | chr2.4:1961857-1961876 | None:intergenic | 30.0% | |
| GTTAATGGCATTCAAAAACT+TGG | + | chr2.4:1962993-1963012 | None:intergenic | 30.0% | |
| TAGATCATACATAAAGTCAG+AGG | - | chr2.4:1963733-1963752 | MS.gene89035:intron | 30.0% | |
| TAGATGATTGACACAATTCA+TGG | - | chr2.4:1962465-1962484 | MS.gene89035:intron | 30.0% | |
| TATAAGTGTTAGTGCTACAA+AGG | - | chr2.4:1962932-1962951 | MS.gene89035:intron | 30.0% | |
| TCCTCTTAATGTCAATTTGA+TGG | + | chr2.4:1961858-1961877 | None:intergenic | 30.0% | |
| TCTTTAATTACGTGGAATTG+AGG | - | chr2.4:1961989-1962008 | MS.gene89035:intron | 30.0% | |
| TGTTGCAAATAATCGTTACA+CGG | - | chr2.4:1963951-1963970 | MS.gene89035:CDS | 30.0% | |
| ! | AAAACCGGTTTATAAAGTCA+GGG | - | chr2.4:1961707-1961726 | MS.gene89035:intron | 30.0% |
| ! | AAACTGACTCTTAACTAACT+TGG | - | chr2.4:1962313-1962332 | MS.gene89035:intron | 30.0% |
| ! | AATAATCGTTACACGGTTTT+TGG | - | chr2.4:1963958-1963977 | MS.gene89035:CDS | 30.0% |
| ! | ATGGATTACTCTCTTATAAC+AGG | - | chr2.4:1963431-1963450 | MS.gene89035:intron | 30.0% |
| ! | TAAAGTCCGATTGTTTTCAT+AGG | + | chr2.4:1963594-1963613 | None:intergenic | 30.0% |
| !! | CTTGAGAAGAGTTTTTAAAG+AGG | - | chr2.4:1962230-1962249 | MS.gene89035:intron | 30.0% |
| !! | TTGATGATTTTGACATACAG+GGG | - | chr2.4:1961381-1961400 | MS.gene89035:intron | 30.0% |
| !!! | AAATTTTATCTTGGTGTTGG+TGG | - | chr2.4:1963701-1963720 | MS.gene89035:intron | 30.0% |
| !!! | TAGTTGAAAGTGTTTTTCAC+AGG | + | chr2.4:1962559-1962578 | None:intergenic | 30.0% |
| AACAGAACGAGGATTCTAAT+TGG | + | chr2.4:1963385-1963404 | None:intergenic | 35.0% | |
| ACAACACTTGAGATATCATC+AGG | + | chr2.4:1963218-1963237 | None:intergenic | 35.0% | |
| AGCTTCCTGCTTGTAATATT+GGG | - | chr2.4:1961133-1961152 | MS.gene89035:CDS | 35.0% | |
| ATTAGTAACCTCTTTCTCCA+GGG | - | chr2.4:1963320-1963339 | MS.gene89035:intron | 35.0% | |
| ATTGAACCCCTCAGATTAAT+CGG | + | chr2.4:1961776-1961795 | None:intergenic | 35.0% | |
| CAATTATCTTCTCAGCTCAA+TGG | - | chr2.4:1963412-1963431 | MS.gene89035:intron | 35.0% | |
| CATTAAGAGGAATCAAACTC+GGG | - | chr2.4:1961867-1961886 | MS.gene89035:CDS | 35.0% | |
| CCAACTCATCTTTACAAAAC+CGG | - | chr2.4:1961692-1961711 | MS.gene89035:intron | 35.0% | |
| CCCATATATTTGCATTGAGT+TGG | + | chr2.4:1962491-1962510 | None:intergenic | 35.0% | |
| CCCATCAAATTGACATTAAG+AGG | - | chr2.4:1961854-1961873 | MS.gene89035:intron | 35.0% | |
| GCCAACTCAATGCAAATATA+TGG | - | chr2.4:1962487-1962506 | MS.gene89035:intron | 35.0% | |
| GCCAAGTCAATGCAAATATA+TGG | - | chr2.4:1962717-1962736 | MS.gene89035:intron | 35.0% | |
| GGTTAATGCAATTCAGTTGA+TGG | + | chr2.4:1963049-1963068 | None:intergenic | 35.0% | |
| GGTTAATTGTGTTCAGAGAA+TGG | + | chr2.4:1962972-1962991 | None:intergenic | 35.0% | |
| GTAACTCATCCTTACAAAAC+CGG | + | chr2.4:1962277-1962296 | None:intergenic | 35.0% | |
| GTTCATTATGTTCTATGCTC+TGG | + | chr2.4:1961830-1961849 | None:intergenic | 35.0% | |
| TAAGTACTTGTACGACTGTT+TGG | - | chr2.4:1963494-1963513 | MS.gene89035:intron | 35.0% | |
| TGATACCATCTTAGAAATCG+TGG | + | chr2.4:1962075-1962094 | None:intergenic | 35.0% | |
| ! | CAAAACCGGTTTATAAAGTC+AGG | - | chr2.4:1961706-1961725 | MS.gene89035:intron | 35.0% |
| ! | CAGTTTTTACCGTTAAGAGT+CGG | + | chr2.4:1962299-1962318 | None:intergenic | 35.0% |
| ! | CTTACCTTTTGTGAGTAAAG+AGG | - | chr2.4:1963672-1963691 | MS.gene89035:CDS | 35.0% |
| ! | TTTGTGTCAGTGTTTTTCAC+AGG | + | chr2.4:1962789-1962808 | None:intergenic | 35.0% |
| !! | CCCATATATTTGCATTGACT+TGG | + | chr2.4:1962721-1962740 | None:intergenic | 35.0% |
| !! | CGGTTTTGTAAAGATGAGTT+GGG | + | chr2.4:1961694-1961713 | None:intergenic | 35.0% |
| !! | GAGAAGAGTTTTTAAAGAGG+AGG | - | chr2.4:1962233-1962252 | MS.gene89035:intron | 35.0% |
| !! | TCTATGCTCTGGCTTTAAAT+GGG | + | chr2.4:1961819-1961838 | None:intergenic | 35.0% |
| !! | TTCTATGCTCTGGCTTTAAA+TGG | + | chr2.4:1961820-1961839 | None:intergenic | 35.0% |
| !! | TTTTGTAAAGATGAGTTGGG+TGG | + | chr2.4:1961691-1961710 | None:intergenic | 35.0% |
| AAGATGTTACTCAGGAGATC+AGG | - | chr2.4:1963185-1963204 | MS.gene89035:intron | 40.0% | |
| ACCATCTTAGAAATCGTGGT+TGG | + | chr2.4:1962071-1962090 | None:intergenic | 40.0% | |
| ACTGACACAAACACGAATAC+CGG | - | chr2.4:1962798-1962817 | MS.gene89035:intron | 40.0% | |
| AGAATCCTATCTATCCGATG+TGG | + | chr2.4:1962212-1962231 | None:intergenic | 40.0% | |
| AGAGGCTGTGTTGAAGATAA+TGG | - | chr2.4:1963751-1963770 | MS.gene89035:intron | 40.0% | |
| AGAGTCCAACACTTACACAT+GGG | + | chr2.4:1962873-1962892 | None:intergenic | 40.0% | |
| CAAACTCCGATTAATCTGAG+GGG | - | chr2.4:1961767-1961786 | MS.gene89035:intron | 40.0% | |
| CAGCTTCCTGCTTGTAATAT+TGG | - | chr2.4:1961132-1961151 | MS.gene89035:CDS | 40.0% | |
| CCAAACTCCGATTAATCTGA+GGG | - | chr2.4:1961766-1961785 | MS.gene89035:intron | 40.0% | |
| CCATCTTAGAAATCGTGGTT+GGG | + | chr2.4:1962070-1962089 | None:intergenic | 40.0% | |
| GACACCCTGACTTTATAAAC+CGG | + | chr2.4:1961714-1961733 | None:intergenic | 40.0% | |
| GATTAGTAACCTCTTTCTCC+AGG | - | chr2.4:1963319-1963338 | MS.gene89035:intron | 40.0% | |
| GTAATCCCATGTGTAAGTGT+TGG | - | chr2.4:1962865-1962884 | MS.gene89035:intron | 40.0% | |
| TAGTTCCACATCGGATAGAT+AGG | - | chr2.4:1962204-1962223 | MS.gene89035:intron | 40.0% | |
| TGGGTAACTATGTAGGTAGA+TGG | - | chr2.4:1962507-1962526 | MS.gene89035:intron | 40.0% | |
| TGTTGGACTCTGACATGTAT+CGG | - | chr2.4:1962882-1962901 | MS.gene89035:intron | 40.0% | |
| ! | CGACCCATCATGTTATTTGA+TGG | - | chr2.4:1961282-1961301 | MS.gene89035:intron | 40.0% |
| ! | GTGTGTAACTTGTGTAATGG+TGG | - | chr2.4:1961403-1961422 | MS.gene89035:intron | 40.0% |
| ! | TCGAAGTGATAACGTGAACT+GGG | - | chr2.4:1961224-1961243 | MS.gene89035:intron | 40.0% |
| !! | CCGGTTTTGTAAAGATGAGT+TGG | + | chr2.4:1961695-1961714 | None:intergenic | 40.0% |
| !! | GATGAGTTACCGACTCTTAA+CGG | - | chr2.4:1962287-1962306 | MS.gene89035:intron | 40.0% |
| AACCTTAATCTCCTAGTCCC+TGG | + | chr2.4:1963340-1963359 | None:intergenic | 45.0% | |
| AACTAAATCCCACCGAGTGT+TGG | + | chr2.4:1962189-1962208 | None:intergenic | 45.0% | |
| AAGCTGGCAAGATGTTACTC+AGG | - | chr2.4:1963177-1963196 | MS.gene89035:intron | 45.0% | |
| ACTACGAGACCAACCCAAAT+GGG | - | chr2.4:1961927-1961946 | MS.gene89035:CDS | 45.0% | |
| ACTGAAGAAGAAACGCTAGC+TGG | + | chr2.4:1963799-1963818 | None:intergenic | 45.0% | |
| AGATTAATCGGAGTTTGGCC+GGG | + | chr2.4:1961764-1961783 | None:intergenic | 45.0% | |
| AGTGACACCCTTAACCCATT+TGG | + | chr2.4:1961944-1961963 | None:intergenic | 45.0% | |
| ATCAAACTCGGGACTTTGAG+AGG | - | chr2.4:1961878-1961897 | MS.gene89035:CDS | 45.0% | |
| ATTCCAATAGAAGCCGTGTC+CGG | + | chr2.4:1962911-1962930 | None:intergenic | 45.0% | |
| CAGAGTCCAACACTTACACA+TGG | + | chr2.4:1962874-1962893 | None:intergenic | 45.0% | |
| CAGATTAATCGGAGTTTGGC+CGG | + | chr2.4:1961765-1961784 | None:intergenic | 45.0% | |
| CAGTTCACGTTATCACTTCG+AGG | + | chr2.4:1961225-1961244 | None:intergenic | 45.0% | |
| CCACCAAACCAGATAGTGTT+GGG | + | chr2.4:1962037-1962056 | None:intergenic | 45.0% | |
| CCCTCAGATTAATCGGAGTT+TGG | + | chr2.4:1961769-1961788 | None:intergenic | 45.0% | |
| CGATGACTGCAGATTTGTCA+GGG | - | chr2.4:1963912-1963931 | MS.gene89035:CDS | 45.0% | |
| CTGAAGAAGAAACGCTAGCT+GGG | + | chr2.4:1963798-1963817 | None:intergenic | 45.0% | |
| GCCAAACTCCGATTAATCTG+AGG | - | chr2.4:1961765-1961784 | MS.gene89035:intron | 45.0% | |
| GTGACACCCTTAACCCATTT+GGG | + | chr2.4:1961943-1961962 | None:intergenic | 45.0% | |
| TCGATGACTGCAGATTTGTC+AGG | - | chr2.4:1963911-1963930 | MS.gene89035:CDS | 45.0% | |
| TGAAGAAGAAACGCTAGCTG+GGG | + | chr2.4:1963797-1963816 | None:intergenic | 45.0% | |
| ! | CCCAACCACGATTTCTAAGA+TGG | - | chr2.4:1962067-1962086 | MS.gene89035:intron | 45.0% |
| ! | CTCGAAGTGATAACGTGAAC+TGG | - | chr2.4:1961223-1961242 | MS.gene89035:intron | 45.0% |
| ! | GGGGTGTGTAACTTGTGTAA+TGG | - | chr2.4:1961400-1961419 | MS.gene89035:intron | 45.0% |
| ! | GGTGGGATTTAGTTCCACAT+CGG | - | chr2.4:1962195-1962214 | MS.gene89035:intron | 45.0% |
| ! | TCTAAGATGGTATCAGAGCC+TGG | - | chr2.4:1962080-1962099 | MS.gene89035:intron | 45.0% |
| ! | TTTGTTGGGATGGGTTTGAC+AGG | - | chr2.4:1963126-1963145 | MS.gene89035:intron | 45.0% |
| !! | ACATGATGGGTCGTTTGTCT+TGG | + | chr2.4:1961275-1961294 | None:intergenic | 45.0% |
| !! | ACGTACAAGCCGGTTTTGTA+AGG | - | chr2.4:1962265-1962284 | MS.gene89035:intron | 45.0% |
| !! | AGACCAACCCAAATGGGTTA+AGG | - | chr2.4:1961933-1961952 | MS.gene89035:CDS | 45.0% |
| !! | CCAACACTATCTGGTTTGGT+GGG | - | chr2.4:1962035-1962054 | MS.gene89035:intron | 45.0% |
| !! | GACCAACCCAAATGGGTTAA+GGG | - | chr2.4:1961934-1961953 | MS.gene89035:CDS | 45.0% |
| AACCTCTTTCTCCAGGGACT+AGG | - | chr2.4:1963326-1963345 | MS.gene89035:intron | 50.0% | |
| AAGAAACGCTAGCTGGGGAA+AGG | + | chr2.4:1963792-1963811 | None:intergenic | 50.0% | |
| ACGCCCAACACTATCTGGTT+TGG | - | chr2.4:1962031-1962050 | MS.gene89035:intron | 50.0% | |
| ACGCGCCCAATATTACAAGC+AGG | + | chr2.4:1961141-1961160 | None:intergenic | 50.0% | |
| AGAAACGCTAGCTGGGGAAA+GGG | + | chr2.4:1963791-1963810 | None:intergenic | 50.0% | |
| AGATGGTATCAGAGCCTGGT+TGG | - | chr2.4:1962084-1962103 | MS.gene89035:intron | 50.0% | |
| AGGTTGTGACAGAGTAGCGA+AGG | + | chr2.4:1961205-1961224 | None:intergenic | 50.0% | |
| CACCCTTAACCCATTTGGGT+TGG | + | chr2.4:1961939-1961958 | None:intergenic | 50.0% | |
| CACTACGAGACCAACCCAAA+TGG | - | chr2.4:1961926-1961945 | MS.gene89035:CDS | 50.0% | |
| CCCACCAAACCAGATAGTGT+TGG | + | chr2.4:1962038-1962057 | None:intergenic | 50.0% | |
| CTCCAGGGACTAGGAGATTA+AGG | - | chr2.4:1963335-1963354 | MS.gene89035:intron | 50.0% | |
| CTCTGACATGTATCGGACAC+CGG | - | chr2.4:1962889-1962908 | MS.gene89035:intron | 50.0% | |
| CTTTAAATGGGCCCCGTAAG+TGG | + | chr2.4:1961807-1961826 | None:intergenic | 50.0% | |
| GAAGCTCTTCAGAGTGAAGC+TGG | - | chr2.4:1963161-1963180 | MS.gene89035:intron | 50.0% | |
| GATGGTATCAGAGCCTGGTT+GGG | - | chr2.4:1962085-1962104 | MS.gene89035:intron | 50.0% | |
| GCAACGACACTTCTGATGGA+TGG | - | chr2.4:1961632-1961651 | MS.gene89035:intron | 50.0% | |
| GGTAGCAACGACACTTCTGA+TGG | - | chr2.4:1961628-1961647 | MS.gene89035:intron | 50.0% | |
| GTGTGTTAGTGGCCAACACT+CGG | - | chr2.4:1962174-1962193 | MS.gene89035:intron | 50.0% | |
| TCAATCCCACCGTCCACTTA+CGG | - | chr2.4:1961791-1961810 | MS.gene89035:intron | 50.0% | |
| TCTTGCATCGTCCACACTTC+AGG | - | chr2.4:1962122-1962141 | MS.gene89035:intron | 50.0% | |
| TGACAGAGTAGCGAAGGTTG+TGG | + | chr2.4:1961199-1961218 | None:intergenic | 50.0% | |
| ! | AACCAGATAGTGTTGGGCGT+AGG | + | chr2.4:1962031-1962050 | None:intergenic | 50.0% |
| ! | ACCAGATAGTGTTGGGCGTA+GGG | + | chr2.4:1962030-1962049 | None:intergenic | 50.0% |
| ! | TTTGAGAGGAGCACACTCCA+AGG | - | chr2.4:1961892-1961911 | MS.gene89035:CDS | 50.0% |
| !! | ATTAACGGTGTCGACGTGTC+CGG | + | chr2.4:1962820-1962839 | None:intergenic | 50.0% |
| !! | CAAAACCGGCTTGTACGTTG+AGG | + | chr2.4:1962263-1962282 | None:intergenic | 50.0% |
| !! | CCCAACACTATCTGGTTTGG+TGG | - | chr2.4:1962034-1962053 | MS.gene89035:intron | 50.0% |
| !! | GTAGTGTTGGCTTGAGACCT+TGG | + | chr2.4:1961912-1961931 | None:intergenic | 50.0% |
| !! | TCTGGTTTGGTGGGTGTGTT+AGG | - | chr2.4:1962044-1962063 | MS.gene89035:intron | 50.0% |
| !! | TTGGGTTGGTCTCGTAGTGT+TGG | + | chr2.4:1961925-1961944 | None:intergenic | 50.0% |
| AAATGGGCCCCGTAAGTGGA+CGG | + | chr2.4:1961803-1961822 | None:intergenic | 55.0% | |
| AATCCCACCGTCCACTTACG+GGG | - | chr2.4:1961793-1961812 | MS.gene89035:intron | 55.0% | |
| ACACCGGACACGGCTTCTAT+TGG | - | chr2.4:1962905-1962924 | MS.gene89035:intron | 55.0% | |
| AGCCTGGTTGGGTCTATCGT+TGG | - | chr2.4:1962096-1962115 | MS.gene89035:intron | 55.0% | |
| CAATCCCACCGTCCACTTAC+GGG | - | chr2.4:1961792-1961811 | MS.gene89035:intron | 55.0% | |
| CATGTATCGGACACCGGACA+CGG | - | chr2.4:1962895-1962914 | MS.gene89035:intron | 55.0% | |
| CTCCTAGTCCCTGGAGAAAG+AGG | + | chr2.4:1963331-1963350 | None:intergenic | 55.0% | |
| GCACTCCTCAACGTACAAGC+CGG | - | chr2.4:1962255-1962274 | MS.gene89035:intron | 55.0% | |
| GCCTGGTTGGGTCTATCGTT+GGG | - | chr2.4:1962097-1962116 | MS.gene89035:intron | 55.0% | |
| GTCCACACTTCAGGCCCATT+GGG | - | chr2.4:1962131-1962150 | MS.gene89035:intron | 55.0% | |
| GTTAGTGGCCAACACTCGGT+GGG | - | chr2.4:1962178-1962197 | MS.gene89035:intron | 55.0% | |
| TGTTAGTGGCCAACACTCGG+TGG | - | chr2.4:1962177-1962196 | MS.gene89035:intron | 55.0% | |
| ! | AGCGTAAGGGGGTGTGTTAG+TGG | - | chr2.4:1962163-1962182 | MS.gene89035:intron | 55.0% |
| ! | CCAGATAGTGTTGGGCGTAG+GGG | + | chr2.4:1962029-1962048 | None:intergenic | 55.0% |
| ! | GTTGGGCGTAGGGGTGTATT+GGG | + | chr2.4:1962020-1962039 | None:intergenic | 55.0% |
| ! | GTTGTGGCTTTTCGTGCACG+TGG | + | chr2.4:1961183-1961202 | None:intergenic | 55.0% |
| ! | TGGCTTTTCGTGCACGTGGT+GGG | + | chr2.4:1961179-1961198 | None:intergenic | 55.0% |
| ! | TGTTGGGCGTAGGGGTGTAT+TGG | + | chr2.4:1962021-1962040 | None:intergenic | 55.0% |
| ACGCTTCAGCCTGGCCCAAT+GGG | + | chr2.4:1962148-1962167 | None:intergenic | 60.0% | |
| CCCCTACGCCCAACACTATC+TGG | - | chr2.4:1962026-1962045 | MS.gene89035:intron | 60.0% | |
| CGTCCACACTTCAGGCCCAT+TGG | - | chr2.4:1962130-1962149 | MS.gene89035:intron | 60.0% | |
| GCCCAACGATAGACCCAACC+AGG | + | chr2.4:1962101-1962120 | None:intergenic | 60.0% | |
| TACGCTTCAGCCTGGCCCAA+TGG | + | chr2.4:1962149-1962168 | None:intergenic | 60.0% | |
| TGGGCCAGGCTGAAGCGTAA+GGG | - | chr2.4:1962150-1962169 | MS.gene89035:intron | 60.0% | |
| TTGGGCCAGGCTGAAGCGTA+AGG | - | chr2.4:1962149-1962168 | MS.gene89035:intron | 60.0% | |
| ! | GTGGCTTTTCGTGCACGTGG+TGG | + | chr2.4:1961180-1961199 | None:intergenic | 60.0% |
| CACCCCCTTACGCTTCAGCC+TGG | + | chr2.4:1962157-1962176 | None:intergenic | 65.0% | |
| CACTTCAGGCCCATTGGGCC+AGG | - | chr2.4:1962136-1962155 | MS.gene89035:intron | 65.0% | |
| GGCCAGGCTGAAGCGTAAGG+GGG | - | chr2.4:1962152-1962171 | MS.gene89035:intron | 65.0% | |
| GGCCCAATGGGCCTGAAGTG+TGG | + | chr2.4:1962136-1962155 | None:intergenic | 65.0% | |
| GGGCCAGGCTGAAGCGTAAG+GGG | - | chr2.4:1962151-1962170 | MS.gene89035:intron | 65.0% | |
| GGGCCCCGTAAGTGGACGGT+GGG | + | chr2.4:1961799-1961818 | None:intergenic | 70.0% | |
| TGGGCCCCGTAAGTGGACGG+TGG | + | chr2.4:1961800-1961819 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 1961111 | 1964005 | 1961111 | ID=MS.gene89035 |
| chr2.4 | mRNA | 1961111 | 1964005 | 1961111 | ID=MS.gene89035.t1;Parent=MS.gene89035 |
| chr2.4 | exon | 1963813 | 1964005 | 1963813 | ID=MS.gene89035.t1.exon1;Parent=MS.gene89035.t1 |
| chr2.4 | CDS | 1963813 | 1964005 | 1963813 | ID=cds.MS.gene89035.t1;Parent=MS.gene89035.t1 |
| chr2.4 | exon | 1963658 | 1963715 | 1963658 | ID=MS.gene89035.t1.exon2;Parent=MS.gene89035.t1 |
| chr2.4 | CDS | 1963658 | 1963715 | 1963658 | ID=cds.MS.gene89035.t1;Parent=MS.gene89035.t1 |
| chr2.4 | exon | 1961861 | 1961968 | 1961861 | ID=MS.gene89035.t1.exon3;Parent=MS.gene89035.t1 |
| chr2.4 | CDS | 1961861 | 1961968 | 1961861 | ID=cds.MS.gene89035.t1;Parent=MS.gene89035.t1 |
| chr2.4 | exon | 1961288 | 1961380 | 1961288 | ID=MS.gene89035.t1.exon4;Parent=MS.gene89035.t1 |
| chr2.4 | CDS | 1961288 | 1961380 | 1961288 | ID=cds.MS.gene89035.t1;Parent=MS.gene89035.t1 |
| chr2.4 | exon | 1961111 | 1961192 | 1961111 | ID=MS.gene89035.t1.exon5;Parent=MS.gene89035.t1 |
| chr2.4 | CDS | 1961111 | 1961192 | 1961111 | ID=cds.MS.gene89035.t1;Parent=MS.gene89035.t1 |
| Gene Sequence |
| Protein sequence |
