Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89262.t1 | XP_003623168.1 | 97.3 | 219 | 6 | 0 | 1 | 219 | 1 | 219 | 3.20E-117 | 431 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89262.t1 | P32110 | 67.6 | 225 | 67 | 2 | 1 | 219 | 1 | 225 | 1.6e-80 | 300.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89262.t1 | G7L5L9 | 97.3 | 219 | 6 | 0 | 1 | 219 | 1 | 219 | 2.3e-117 | 431.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049283 | MS.gene89262 | 0.819059 | 1.42E-52 | -1.69E-46 |
| MS.gene050081 | MS.gene89262 | 0.804345 | 2.26E-49 | -1.69E-46 |
| MS.gene050561 | MS.gene89262 | 0.800117 | 1.68E-48 | -1.69E-46 |
| MS.gene052954 | MS.gene89262 | 0.838792 | 2.33E-57 | -1.69E-46 |
| MS.gene053931 | MS.gene89262 | 0.809359 | 1.97E-50 | -1.69E-46 |
| MS.gene055150 | MS.gene89262 | 0.80592 | 1.06E-49 | -1.69E-46 |
| MS.gene055151 | MS.gene89262 | 0.843176 | 1.65E-58 | -1.69E-46 |
| MS.gene055155 | MS.gene89262 | 0.909966 | 3.17E-82 | -1.69E-46 |
| MS.gene057208 | MS.gene89262 | 0.819028 | 1.44E-52 | -1.69E-46 |
| MS.gene057392 | MS.gene89262 | 0.8047 | 1.90E-49 | -1.69E-46 |
| MS.gene058769 | MS.gene89262 | 0.806811 | 6.86E-50 | -1.69E-46 |
| MS.gene058781 | MS.gene89262 | 0.818117 | 2.32E-52 | -1.69E-46 |
| MS.gene060935 | MS.gene89262 | 0.822104 | 2.83E-53 | -1.69E-46 |
| MS.gene060937 | MS.gene89262 | 0.821285 | 4.38E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89262.t1 | MTR_7g065230 | 97.260 | 219 | 6 | 0 | 1 | 219 | 1 | 219 | 8.67e-157 | 433 |
| MS.gene89262.t1 | MTR_7g065290 | 80.357 | 224 | 39 | 1 | 1 | 219 | 1 | 224 | 1.12e-128 | 362 |
| MS.gene89262.t1 | MTR_7g065600 | 78.571 | 224 | 43 | 1 | 1 | 219 | 1 | 224 | 3.83e-126 | 355 |
| MS.gene89262.t1 | MTR_7g065590 | 79.464 | 224 | 41 | 1 | 1 | 219 | 1 | 224 | 6.41e-126 | 355 |
| MS.gene89262.t1 | MTR_7g065265 | 79.018 | 224 | 42 | 1 | 1 | 219 | 1 | 224 | 5.81e-125 | 352 |
| MS.gene89262.t1 | MTR_7g065270 | 75.446 | 224 | 50 | 1 | 1 | 219 | 1 | 224 | 2.33e-121 | 343 |
| MS.gene89262.t1 | MTR_7g065260 | 78.222 | 225 | 43 | 2 | 1 | 219 | 8 | 232 | 2.61e-115 | 328 |
| MS.gene89262.t1 | MTR_7g065630 | 70.320 | 219 | 64 | 1 | 1 | 218 | 19 | 237 | 3.21e-107 | 308 |
| MS.gene89262.t1 | MTR_7g065660 | 64.889 | 225 | 73 | 2 | 1 | 219 | 1 | 225 | 2.16e-100 | 290 |
| MS.gene89262.t1 | MTR_7g065720 | 64.889 | 225 | 73 | 2 | 1 | 219 | 1 | 225 | 5.76e-99 | 287 |
| MS.gene89262.t1 | MTR_4g019790 | 60.538 | 223 | 83 | 1 | 1 | 218 | 1 | 223 | 1.18e-95 | 278 |
| MS.gene89262.t1 | MTR_7g065750 | 61.947 | 226 | 79 | 3 | 1 | 219 | 1 | 226 | 2.18e-93 | 273 |
| MS.gene89262.t1 | MTR_7g065710 | 66.010 | 203 | 68 | 1 | 8 | 209 | 5 | 207 | 1.37e-92 | 271 |
| MS.gene89262.t1 | MTR_7g065640 | 63.182 | 220 | 67 | 3 | 1 | 219 | 1 | 207 | 6.88e-92 | 268 |
| MS.gene89262.t1 | MTR_7g065680 | 67.431 | 218 | 70 | 1 | 1 | 217 | 1 | 218 | 1.18e-91 | 268 |
| MS.gene89262.t1 | MTR_7g065740 | 58.929 | 224 | 86 | 2 | 1 | 218 | 1 | 224 | 6.51e-91 | 266 |
| MS.gene89262.t1 | MTR_7g065700 | 67.619 | 210 | 67 | 1 | 1 | 209 | 1 | 210 | 6.94e-89 | 261 |
| MS.gene89262.t1 | MTR_4g019780 | 59.535 | 215 | 80 | 3 | 2 | 210 | 3 | 216 | 2.54e-85 | 252 |
| MS.gene89262.t1 | MTR_6g080440 | 47.297 | 222 | 107 | 4 | 7 | 219 | 3 | 223 | 1.40e-59 | 187 |
| MS.gene89262.t1 | MTR_1g090150 | 46.262 | 214 | 105 | 4 | 6 | 211 | 2 | 213 | 1.49e-59 | 187 |
| MS.gene89262.t1 | MTR_1g115195 | 48.756 | 201 | 95 | 3 | 7 | 199 | 3 | 203 | 1.88e-57 | 181 |
| MS.gene89262.t1 | MTR_5g040430 | 44.595 | 222 | 110 | 4 | 1 | 210 | 1 | 221 | 2.37e-56 | 179 |
| MS.gene89262.t1 | MTR_8g087410 | 44.344 | 221 | 116 | 3 | 4 | 218 | 3 | 222 | 9.31e-56 | 177 |
| MS.gene89262.t1 | MTR_1g090070 | 44.091 | 220 | 115 | 3 | 7 | 218 | 9 | 228 | 1.04e-55 | 177 |
| MS.gene89262.t1 | MTR_3g099757 | 46.364 | 220 | 111 | 3 | 5 | 218 | 3 | 221 | 1.13e-55 | 177 |
| MS.gene89262.t1 | MTR_4g059730 | 42.593 | 216 | 115 | 3 | 6 | 213 | 3 | 217 | 3.16e-55 | 176 |
| MS.gene89262.t1 | MTR_8g087425 | 44.037 | 218 | 115 | 3 | 4 | 215 | 2 | 218 | 9.43e-55 | 174 |
| MS.gene89262.t1 | MTR_1g090060 | 44.344 | 221 | 114 | 4 | 7 | 219 | 3 | 222 | 1.48e-54 | 174 |
| MS.gene89262.t1 | MTR_1g090090 | 42.986 | 221 | 117 | 4 | 7 | 219 | 3 | 222 | 8.71e-54 | 172 |
| MS.gene89262.t1 | MTR_1g090100 | 43.379 | 219 | 115 | 4 | 8 | 218 | 3 | 220 | 3.41e-52 | 168 |
| MS.gene89262.t1 | MTR_8g061950 | 42.922 | 219 | 112 | 5 | 5 | 210 | 3 | 221 | 4.12e-48 | 158 |
| MS.gene89262.t1 | MTR_5g037380 | 42.453 | 212 | 107 | 5 | 1 | 199 | 1 | 210 | 3.62e-45 | 150 |
| MS.gene89262.t1 | MTR_2g070130 | 42.439 | 205 | 106 | 6 | 6 | 202 | 3 | 203 | 2.80e-42 | 142 |
| MS.gene89262.t1 | MTR_3g467420 | 42.254 | 213 | 112 | 7 | 1 | 204 | 1 | 211 | 4.09e-41 | 139 |
| MS.gene89262.t1 | MTR_2g070150 | 40.394 | 203 | 113 | 5 | 6 | 202 | 3 | 203 | 7.61e-41 | 138 |
| MS.gene89262.t1 | MTR_2g070200 | 48.387 | 155 | 78 | 2 | 6 | 158 | 3 | 157 | 4.85e-40 | 137 |
| MS.gene89262.t1 | MTR_3g467430 | 41.346 | 208 | 113 | 6 | 4 | 204 | 6 | 211 | 1.46e-39 | 135 |
| MS.gene89262.t1 | MTR_4g124130 | 45.312 | 192 | 90 | 7 | 6 | 187 | 3 | 189 | 1.14e-38 | 133 |
| MS.gene89262.t1 | MTR_2g070140 | 39.378 | 193 | 109 | 5 | 21 | 207 | 2 | 192 | 3.11e-38 | 131 |
| MS.gene89262.t1 | MTR_2g070210 | 39.048 | 210 | 118 | 6 | 6 | 207 | 3 | 210 | 5.84e-38 | 131 |
| MS.gene89262.t1 | MTR_2g070120 | 37.745 | 204 | 117 | 5 | 6 | 202 | 3 | 203 | 5.84e-38 | 131 |
| MS.gene89262.t1 | MTR_8g056940 | 40.385 | 208 | 111 | 7 | 16 | 213 | 13 | 217 | 3.34e-37 | 129 |
| MS.gene89262.t1 | MTR_2g070180 | 38.860 | 193 | 110 | 5 | 16 | 202 | 13 | 203 | 4.81e-37 | 129 |
| MS.gene89262.t1 | MTR_5g076900 | 38.208 | 212 | 121 | 5 | 3 | 207 | 2 | 210 | 5.57e-36 | 126 |
| MS.gene89262.t1 | MTR_2g070060 | 36.538 | 208 | 122 | 5 | 7 | 207 | 4 | 208 | 5.50e-34 | 121 |
| MS.gene89262.t1 | MTR_2g070070 | 37.327 | 217 | 126 | 5 | 7 | 216 | 4 | 217 | 5.80e-34 | 121 |
| MS.gene89262.t1 | MTR_0186s0030 | 46.923 | 130 | 67 | 2 | 16 | 144 | 13 | 141 | 5.51e-31 | 111 |
| MS.gene89262.t1 | MTR_2g070110 | 39.196 | 199 | 112 | 5 | 7 | 199 | 4 | 199 | 7.63e-27 | 102 |
| MS.gene89262.t1 | MTR_2g072120 | 43.939 | 66 | 36 | 1 | 51 | 115 | 2 | 67 | 6.30e-15 | 67.8 |
| MS.gene89262.t1 | MTR_4g134370 | 29.437 | 231 | 136 | 8 | 1 | 208 | 1 | 227 | 3.15e-13 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89262.t1 | AT3G09270 | 50.446 | 224 | 102 | 5 | 3 | 218 | 2 | 224 | 1.53e-68 | 209 |
| MS.gene89262.t1 | AT2G29420 | 49.091 | 220 | 103 | 4 | 3 | 215 | 5 | 222 | 2.10e-68 | 209 |
| MS.gene89262.t1 | AT2G29480 | 47.111 | 225 | 111 | 3 | 1 | 218 | 1 | 224 | 2.14e-59 | 186 |
| MS.gene89262.t1 | AT2G29490 | 49.282 | 209 | 98 | 3 | 1 | 202 | 1 | 208 | 7.83e-59 | 185 |
| MS.gene89262.t1 | AT2G29450 | 46.637 | 223 | 112 | 3 | 3 | 218 | 2 | 224 | 1.52e-58 | 184 |
| MS.gene89262.t1 | AT2G29460 | 45.778 | 225 | 114 | 4 | 1 | 218 | 1 | 224 | 9.06e-56 | 177 |
| MS.gene89262.t1 | AT2G29470 | 44.601 | 213 | 109 | 4 | 1 | 205 | 1 | 212 | 4.80e-53 | 170 |
| MS.gene89262.t1 | AT2G29440 | 45.283 | 212 | 107 | 5 | 1 | 205 | 1 | 210 | 5.65e-51 | 165 |
| MS.gene89262.t1 | AT1G69930 | 39.286 | 224 | 125 | 3 | 2 | 214 | 7 | 230 | 5.84e-50 | 162 |
| MS.gene89262.t1 | AT1G10370 | 44.076 | 211 | 104 | 5 | 1 | 199 | 1 | 209 | 9.75e-50 | 162 |
| MS.gene89262.t1 | AT1G59700 | 44.978 | 229 | 110 | 7 | 5 | 217 | 4 | 232 | 4.77e-49 | 160 |
| MS.gene89262.t1 | AT1G59670 | 43.269 | 208 | 105 | 5 | 5 | 199 | 4 | 211 | 1.27e-46 | 154 |
| MS.gene89262.t1 | AT1G74590 | 38.362 | 232 | 128 | 5 | 1 | 218 | 1 | 231 | 8.29e-46 | 152 |
| MS.gene89262.t1 | AT1G27130 | 39.556 | 225 | 122 | 6 | 1 | 212 | 1 | 224 | 6.46e-45 | 149 |
| MS.gene89262.t1 | AT5G62480 | 40.367 | 218 | 114 | 5 | 8 | 210 | 9 | 225 | 1.40e-44 | 149 |
| MS.gene89262.t1 | AT1G10360 | 39.320 | 206 | 113 | 4 | 6 | 199 | 4 | 209 | 2.60e-44 | 148 |
| MS.gene89262.t1 | AT1G27140 | 37.719 | 228 | 125 | 6 | 1 | 213 | 1 | 226 | 1.26e-43 | 147 |
| MS.gene89262.t1 | AT1G78340 | 43.868 | 212 | 112 | 6 | 6 | 211 | 3 | 213 | 4.35e-43 | 144 |
| MS.gene89262.t1 | AT1G69920 | 37.719 | 228 | 127 | 5 | 1 | 213 | 26 | 253 | 1.38e-41 | 142 |
| MS.gene89262.t1 | AT1G78370 | 41.919 | 198 | 107 | 5 | 16 | 207 | 13 | 208 | 2.00e-41 | 140 |
| MS.gene89262.t1 | AT1G17170 | 41.935 | 217 | 117 | 6 | 6 | 216 | 3 | 216 | 3.75e-41 | 139 |
| MS.gene89262.t1 | AT1G78380 | 41.346 | 208 | 112 | 5 | 7 | 207 | 4 | 208 | 1.97e-40 | 138 |
| MS.gene89262.t1 | AT1G78320 | 40.865 | 208 | 113 | 5 | 5 | 205 | 2 | 206 | 2.95e-40 | 137 |
| MS.gene89262.t1 | AT1G53680 | 38.571 | 210 | 119 | 5 | 1 | 202 | 1 | 208 | 5.06e-37 | 129 |
| MS.gene89262.t1 | AT1G17180 | 40.097 | 207 | 118 | 6 | 6 | 207 | 3 | 208 | 7.07e-36 | 126 |
| MS.gene89262.t1 | AT3G43800 | 37.864 | 206 | 116 | 7 | 4 | 199 | 2 | 205 | 1.53e-34 | 123 |
| MS.gene89262.t1 | AT1G78360 | 40.191 | 209 | 114 | 6 | 7 | 207 | 4 | 209 | 1.65e-33 | 120 |
| MS.gene89262.t1 | AT1G17190 | 39.683 | 189 | 104 | 5 | 6 | 187 | 4 | 189 | 1.62e-32 | 117 |
| MS.gene89262.t1 | AT5G62480 | 31.797 | 217 | 108 | 5 | 8 | 210 | 9 | 199 | 6.14e-27 | 103 |
| MS.gene89262.t1 | AT5G62480 | 31.797 | 217 | 107 | 5 | 8 | 210 | 9 | 198 | 1.28e-26 | 102 |
| MS.gene89262.t1 | AT1G78320 | 33.816 | 207 | 102 | 5 | 5 | 205 | 2 | 179 | 3.26e-24 | 95.5 |
| MS.gene89262.t1 | AT2G02390 | 30.841 | 214 | 130 | 6 | 3 | 202 | 4 | 213 | 1.45e-17 | 78.6 |
| MS.gene89262.t1 | AT2G02380 | 29.717 | 212 | 131 | 7 | 5 | 202 | 9 | 216 | 5.24e-17 | 77.0 |
| MS.gene89262.t1 | AT2G02390 | 30.317 | 221 | 129 | 7 | 3 | 202 | 4 | 220 | 1.87e-16 | 75.5 |
| MS.gene89262.t1 | AT2G02390 | 32.353 | 170 | 102 | 4 | 3 | 160 | 4 | 172 | 3.08e-14 | 68.9 |
Find 49 sgRNAs with CRISPR-Local
Find 110 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGAGCCTTAGCTCGTTTC+TGG | 0.128575 | 7.1:+37069326 | MS.gene89262:CDS |
| CCCTCCCAAAGAAACTTATT+TGG | 0.190799 | 7.1:+37071083 | MS.gene89262:CDS |
| GAAAGCCAAATAAGTTTCTT+TGG | 0.223467 | 7.1:-37071088 | None:intergenic |
| TAAGGATCATAAGGCAATAT+TGG | 0.250272 | 7.1:-37069301 | None:intergenic |
| TTGGGTGGTTATTGAAGTTT+TGG | 0.282844 | 7.1:-37071044 | None:intergenic |
| ACAGGAACCTTCTTATAAAC+AGG | 0.304362 | 7.1:-37069202 | None:intergenic |
| GAGCTCAAGGACAAATTCTT+TGG | 0.339009 | 7.1:+37070910 | MS.gene89262:CDS |
| AAAGCCAAATAAGTTTCTTT+GGG | 0.353412 | 7.1:-37071087 | None:intergenic |
| TGAGAATGCTATTGAGGAAA+TGG | 0.394079 | 7.1:+37070861 | MS.gene89262:CDS |
| TGGCTCCAATTGAATAGCTT+GGG | 0.415400 | 7.1:-37071024 | None:intergenic |
| TTCTTTGGTGGGGACGAGAT+TGG | 0.423311 | 7.1:+37070925 | MS.gene89262:CDS |
| AATTTCCCAAGCTATTCAAT+TGG | 0.430707 | 7.1:+37071019 | MS.gene89262:CDS |
| ATCTCCACCCTTGTTACAAA+TGG | 0.430811 | 7.1:-37069097 | None:intergenic |
| TGCTTCTTGCAATGCTATGA+AGG | 0.431490 | 7.1:-37070968 | None:intergenic |
| ATCACAAGGGATTCTGATAT+AGG | 0.433145 | 7.1:-37069244 | None:intergenic |
| GACCAAGTTCATAGATGATA+AGG | 0.434027 | 7.1:+37069348 | MS.gene89262:CDS |
| GGAGATTGCTCTAAAATTGA+AGG | 0.444678 | 7.1:+37069114 | MS.gene89262:CDS |
| TTGGCTCCAATTGAATAGCT+TGG | 0.457895 | 7.1:-37071025 | None:intergenic |
| CAAGTATGAGGAAGAAAAGT+GGG | 0.461699 | 7.1:+37069147 | MS.gene89262:CDS |
| ATACAACCCTGTTTATAAGA+AGG | 0.470144 | 7.1:+37069195 | MS.gene89262:CDS |
| TACCTTATCATCTATGAACT+TGG | 0.479710 | 7.1:-37069350 | None:intergenic |
| GGGAGTTGAATACAAGTATG+AGG | 0.484614 | 7.1:+37069135 | MS.gene89262:CDS |
| CCAAATAAGTTTCTTTGGGA+GGG | 0.492363 | 7.1:-37071083 | None:intergenic |
| GCCAAATAAGTTTCTTTGGG+AGG | 0.495208 | 7.1:-37071084 | None:intergenic |
| ATAGCATTGCAAGAAGCAAT+GGG | 0.504072 | 7.1:+37070973 | MS.gene89262:CDS |
| TTGAGTATATTGATGAGACT+TGG | 0.504629 | 7.1:+37069269 | MS.gene89262:CDS |
| CTCAAGGACAAATTCTTTGG+TGG | 0.512720 | 7.1:+37070913 | MS.gene89262:CDS |
| CATAGCATTGCAAGAAGCAA+TGG | 0.516226 | 7.1:+37070972 | MS.gene89262:CDS |
| TTATCATTATGAACTAATAC+AGG | 0.517988 | 7.1:-37069220 | None:intergenic |
| AGAACGTGAGAATGCTATTG+AGG | 0.521783 | 7.1:+37070855 | MS.gene89262:CDS |
| TCAAGGACAAATTCTTTGGT+GGG | 0.532263 | 7.1:+37070914 | MS.gene89262:CDS |
| TGCTATTGAGGAAATGGAAG+TGG | 0.535112 | 7.1:+37070867 | MS.gene89262:CDS |
| ACAAGTATGAGGAAGAAAAG+TGG | 0.564735 | 7.1:+37069146 | MS.gene89262:CDS |
| TAGAAAGTCCATTTGTAACA+AGG | 0.577928 | 7.1:+37069089 | MS.gene89262:CDS |
| CAGGAACCTTCTTATAAACA+GGG | 0.585709 | 7.1:-37069201 | None:intergenic |
| ATTTCTCGAGAATGAGCTCA+AGG | 0.587226 | 7.1:+37070897 | MS.gene89262:CDS |
| CAAGGACAAATTCTTTGGTG+GGG | 0.589077 | 7.1:+37070915 | MS.gene89262:CDS |
| GATGGCATCAAACAAGGAAG+AGG | 0.596993 | 7.1:+37069048 | None:intergenic |
| TGCAACGATGGCATCAAACA+AGG | 0.599109 | 7.1:+37069042 | None:intergenic |
| CAATATACTCAAGAATCACA+AGG | 0.601780 | 7.1:-37069258 | None:intergenic |
| CAATAACCACCCAATTGTCA+AGG | 0.611678 | 7.1:+37071053 | MS.gene89262:CDS |
| AGAAAGTCCATTTGTAACAA+GGG | 0.613221 | 7.1:+37069090 | MS.gene89262:CDS |
| GAGATTGCTCTAAAATTGAA+GGG | 0.615792 | 7.1:+37069115 | MS.gene89262:CDS |
| AAGTCCATTTGTAACAAGGG+TGG | 0.625280 | 7.1:+37069093 | MS.gene89262:CDS |
| AAGTATGAGGAAGAAAAGTG+GGG | 0.629580 | 7.1:+37069148 | MS.gene89262:CDS |
| CTTGGTCCAGAAACGAGCTA+AGG | 0.632263 | 7.1:-37069332 | None:intergenic |
| GACAGTGTTTGAATGTTATG+CGG | 0.672533 | 7.1:+37070806 | MS.gene89262:intron |
| AATATACTCAAGAATCACAA+GGG | 0.678725 | 7.1:-37069257 | None:intergenic |
| AGTATGAGGAAGAAAAGTGG+GGG | 0.714879 | 7.1:+37069149 | MS.gene89262:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATTAATAAAAAATTAA+AGG | - | chr7.1:37070272-37070291 | None:intergenic | 0.0% |
| !! | AAACTTAGTTATAATTATAT+AGG | + | chr7.1:37070361-37070380 | MS.gene89262:intron | 10.0% |
| !!! | AGATAAATTAATTCATATTT+TGG | - | chr7.1:37070587-37070606 | None:intergenic | 10.0% |
| !!! | ATTACATTAATTTTTTTTGA+AGG | - | chr7.1:37070161-37070180 | None:intergenic | 10.0% |
| !! | TAAAATATGTTATGTGATTA+TGG | + | chr7.1:37069663-37069682 | MS.gene89262:intron | 15.0% |
| !! | TGTAATTGAAAATACAAAAA+AGG | + | chr7.1:37070175-37070194 | MS.gene89262:intron | 15.0% |
| !!! | ATTCACATTTAATTTATGTT+TGG | - | chr7.1:37069882-37069901 | None:intergenic | 15.0% |
| !! | AAAAAGATAATAAGTTGTTG+TGG | + | chr7.1:37070492-37070511 | MS.gene89262:intron | 20.0% |
| !! | AAAAGATAATAAGTTGTTGT+GGG | + | chr7.1:37070493-37070512 | MS.gene89262:intron | 20.0% |
| !! | AATCCCTAAGATAATTTATT+TGG | - | chr7.1:37070059-37070078 | None:intergenic | 20.0% |
| !! | CATCCAAATAAATTATCTTA+GGG | + | chr7.1:37070053-37070072 | MS.gene89262:intron | 20.0% |
| !! | CCAAAAAGATCTTATATTTA+GGG | + | chr7.1:37070223-37070242 | MS.gene89262:intron | 20.0% |
| !! | TCATCCAAATAAATTATCTT+AGG | + | chr7.1:37070052-37070071 | MS.gene89262:intron | 20.0% |
| !! | TGTTGAATCACAAATTATTT+AGG | - | chr7.1:37069970-37069989 | None:intergenic | 20.0% |
| !! | TTATCATTATGAACTAATAC+AGG | - | chr7.1:37069223-37069242 | None:intergenic | 20.0% |
| !!! | AAAATATTTTGTGTACCTTT+GGG | + | chr7.1:37070384-37070403 | MS.gene89262:intron | 20.0% |
| !!! | AATTGTAAGCAAAAAACTTT+TGG | - | chr7.1:37069769-37069788 | None:intergenic | 20.0% |
| !!! | ACAAAAAAGGTCTTATAAAA+AGG | + | chr7.1:37070188-37070207 | MS.gene89262:intron | 20.0% |
| !!! | CAAAAAAGGTCTTATAAAAA+GGG | + | chr7.1:37070189-37070208 | MS.gene89262:intron | 20.0% |
| !!! | CCTAAATATAAGATCTTTTT+GGG | - | chr7.1:37070225-37070244 | None:intergenic | 20.0% |
| ! | AAAAATTAAAGGTGACAATG+AGG | - | chr7.1:37070261-37070280 | None:intergenic | 25.0% |
| ! | AAAATTAAAGGTGACAATGA+GGG | - | chr7.1:37070260-37070279 | None:intergenic | 25.0% |
| ! | AAAGATAATAAGTTGTTGTG+GGG | + | chr7.1:37070494-37070513 | MS.gene89262:intron | 25.0% |
| ! | AAAGCCAAATAAGTTTCTTT+GGG | - | chr7.1:37071090-37071109 | None:intergenic | 25.0% |
| ! | AATATACTCAAGAATCACAA+GGG | - | chr7.1:37069260-37069279 | None:intergenic | 25.0% |
| ! | AATATGGCAGAGTAAATATA+GGG | - | chr7.1:37069417-37069436 | None:intergenic | 25.0% |
| ! | ATTTATTTGGATGAACAACA+AGG | - | chr7.1:37070046-37070065 | None:intergenic | 25.0% |
| ! | CCCAAAAAGATCTTATATTT+AGG | + | chr7.1:37070222-37070241 | MS.gene89262:intron | 25.0% |
| ! | TAAGCAGAAAATATTAGAAG+AGG | - | chr7.1:37069384-37069403 | None:intergenic | 25.0% |
| !! | AAATATTTTGTGTACCTTTG+GGG | + | chr7.1:37070385-37070404 | MS.gene89262:intron | 25.0% |
| !! | ATTTTATGTCGATGTCTAAA+TGG | - | chr7.1:37069649-37069668 | None:intergenic | 25.0% |
| !! | CCCTAAATATAAGATCTTTT+TGG | - | chr7.1:37070226-37070245 | None:intergenic | 25.0% |
| !! | GAAAATATTTTGTGTACCTT+TGG | + | chr7.1:37070383-37070402 | MS.gene89262:intron | 25.0% |
| AAACACTCTTTCCTTGAAAA+AGG | + | chr7.1:37070320-37070339 | MS.gene89262:intron | 30.0% | |
| AAATTAAAGGTGACAATGAG+GGG | - | chr7.1:37070259-37070278 | None:intergenic | 30.0% | |
| AACACTCTTTCCTTGAAAAA+GGG | + | chr7.1:37070321-37070340 | MS.gene89262:intron | 30.0% | |
| AACATTGAATTATGCTAGTC+GGG | + | chr7.1:37069467-37069486 | MS.gene89262:intron | 30.0% | |
| AAGATAATAAGTTGTTGTGG+GGG | + | chr7.1:37070495-37070514 | MS.gene89262:intron | 30.0% | |
| AAGTTATGCTAAAGGGAATA+TGG | - | chr7.1:37069433-37069452 | None:intergenic | 30.0% | |
| AATTTCCCAAGCTATTCAAT+TGG | + | chr7.1:37071019-37071038 | MS.gene89262:CDS | 30.0% | |
| ACCATCTAAGTTATGCTAAA+GGG | - | chr7.1:37069440-37069459 | None:intergenic | 30.0% | |
| AGAAAGTCCATTTGTAACAA+GGG | + | chr7.1:37069090-37069109 | MS.gene89262:CDS | 30.0% | |
| ATACAACCCTGTTTATAAGA+AGG | + | chr7.1:37069195-37069214 | MS.gene89262:CDS | 30.0% | |
| CAATATACTCAAGAATCACA+AGG | - | chr7.1:37069261-37069280 | None:intergenic | 30.0% | |
| CACAAAGAAAAATAGAAGAG+TGG | - | chr7.1:37069575-37069594 | None:intergenic | 30.0% | |
| CTAAGTTTGAGCTCAATTTA+AGG | - | chr7.1:37070349-37070368 | None:intergenic | 30.0% | |
| GAAAGCCAAATAAGTTTCTT+TGG | - | chr7.1:37071091-37071110 | None:intergenic | 30.0% | |
| GAACATTGAATTATGCTAGT+CGG | + | chr7.1:37069466-37069485 | MS.gene89262:intron | 30.0% | |
| GAATATGGCAGAGTAAATAT+AGG | - | chr7.1:37069418-37069437 | None:intergenic | 30.0% | |
| TAAGGATCATAAGGCAATAT+TGG | - | chr7.1:37069304-37069323 | None:intergenic | 30.0% | |
| TACCATCTAAGTTATGCTAA+AGG | - | chr7.1:37069441-37069460 | None:intergenic | 30.0% | |
| TACCTTATCATCTATGAACT+TGG | - | chr7.1:37069353-37069372 | None:intergenic | 30.0% | |
| TAGAAAGTCCATTTGTAACA+AGG | + | chr7.1:37069089-37069108 | MS.gene89262:CDS | 30.0% | |
| TATGAGTGTACACATATCTT+TGG | + | chr7.1:37070532-37070551 | MS.gene89262:intron | 30.0% | |
| TGATCTCAAATATACGAACT+TGG | - | chr7.1:37070007-37070026 | None:intergenic | 30.0% | |
| TTGAGTATATTGATGAGACT+TGG | + | chr7.1:37069269-37069288 | MS.gene89262:CDS | 30.0% | |
| ! | AAAAGTCGAAGGAAACTTTT+AGG | - | chr7.1:37069740-37069759 | None:intergenic | 30.0% |
| ! | GTCTAAATGGTTTTTATTCG+AGG | - | chr7.1:37069636-37069655 | None:intergenic | 30.0% |
| ! | GTTCGTATATTTGAGATCAT+AGG | + | chr7.1:37070008-37070027 | MS.gene89262:intron | 30.0% |
| !! | ATTTAAGGAACCCTTTTTCA+AGG | - | chr7.1:37070334-37070353 | None:intergenic | 30.0% |
| !! | GAGATTGCTCTAAAATTGAA+GGG | + | chr7.1:37069115-37069134 | MS.gene89262:CDS | 30.0% |
| AAGTATGAGGAAGAAAAGTG+GGG | + | chr7.1:37069148-37069167 | MS.gene89262:CDS | 35.0% | |
| ACAAGTATGAGGAAGAAAAG+TGG | + | chr7.1:37069146-37069165 | MS.gene89262:CDS | 35.0% | |
| ACAGGAACCTTCTTATAAAC+AGG | - | chr7.1:37069205-37069224 | None:intergenic | 35.0% | |
| ACATTGAATTATGCTAGTCG+GGG | + | chr7.1:37069468-37069487 | MS.gene89262:intron | 35.0% | |
| ATAGCATTGCAAGAAGCAAT+GGG | + | chr7.1:37070973-37070992 | MS.gene89262:CDS | 35.0% | |
| ATCACAAGGGATTCTGATAT+AGG | - | chr7.1:37069247-37069266 | None:intergenic | 35.0% | |
| CAAGTATGAGGAAGAAAAGT+GGG | + | chr7.1:37069147-37069166 | MS.gene89262:CDS | 35.0% | |
| CAGGAACCTTCTTATAAACA+GGG | - | chr7.1:37069204-37069223 | None:intergenic | 35.0% | |
| CTTTGTGTGACTCTAGTATA+AGG | + | chr7.1:37069588-37069607 | MS.gene89262:intron | 35.0% | |
| GACAGTGTTTGAATGTTATG+CGG | + | chr7.1:37070806-37070825 | MS.gene89262:intron | 35.0% | |
| GACCAAGTTCATAGATGATA+AGG | + | chr7.1:37069348-37069367 | MS.gene89262:CDS | 35.0% | |
| GATAAAGAGACATAACGAAG+CGG | + | chr7.1:37070424-37070443 | MS.gene89262:intron | 35.0% | |
| TCAAGGACAAATTCTTTGGT+GGG | + | chr7.1:37070914-37070933 | MS.gene89262:CDS | 35.0% | |
| TCCCTTTAGCATAACTTAGA+TGG | + | chr7.1:37069436-37069455 | MS.gene89262:intron | 35.0% | |
| TGAGAATGCTATTGAGGAAA+TGG | + | chr7.1:37070861-37070880 | MS.gene89262:CDS | 35.0% | |
| TTTGGAGAACTAAAAGTCGA+AGG | - | chr7.1:37069751-37069770 | None:intergenic | 35.0% | |
| ! | CCAAATAAGTTTCTTTGGGA+GGG | - | chr7.1:37071086-37071105 | None:intergenic | 35.0% |
| ! | GCTCTTTTGTAAGGATCATA+AGG | - | chr7.1:37069313-37069332 | None:intergenic | 35.0% |
| ! | GGAGTTTTTCCTTGACAATT+GGG | - | chr7.1:37071065-37071084 | None:intergenic | 35.0% |
| ! | TTGGGTGGTTATTGAAGTTT+TGG | - | chr7.1:37071047-37071066 | None:intergenic | 35.0% |
| !! | GGAGATTGCTCTAAAATTGA+AGG | + | chr7.1:37069114-37069133 | MS.gene89262:CDS | 35.0% |
| AAGTCCATTTGTAACAAGGG+TGG | + | chr7.1:37069093-37069112 | MS.gene89262:CDS | 40.0% | |
| AGAACGTGAGAATGCTATTG+AGG | + | chr7.1:37070855-37070874 | MS.gene89262:CDS | 40.0% | |
| AGTATGAGGAAGAAAAGTGG+GGG | + | chr7.1:37069149-37069168 | MS.gene89262:CDS | 40.0% | |
| ATCTCCACCCTTGTTACAAA+TGG | - | chr7.1:37069100-37069119 | None:intergenic | 40.0% | |
| ATTTCTCGAGAATGAGCTCA+AGG | + | chr7.1:37070897-37070916 | MS.gene89262:CDS | 40.0% | |
| CAAGGACAAATTCTTTGGTG+GGG | + | chr7.1:37070915-37070934 | MS.gene89262:CDS | 40.0% | |
| CAATAACCACCCAATTGTCA+AGG | + | chr7.1:37071053-37071072 | MS.gene89262:CDS | 40.0% | |
| CATAGCATTGCAAGAAGCAA+TGG | + | chr7.1:37070972-37070991 | MS.gene89262:CDS | 40.0% | |
| CCCTCCCAAAGAAACTTATT+TGG | + | chr7.1:37071083-37071102 | MS.gene89262:CDS | 40.0% | |
| CTCAAGGACAAATTCTTTGG+TGG | + | chr7.1:37070913-37070932 | MS.gene89262:CDS | 40.0% | |
| GAGCTCAAGGACAAATTCTT+TGG | + | chr7.1:37070910-37070929 | MS.gene89262:CDS | 40.0% | |
| GCCAAATAAGTTTCTTTGGG+AGG | - | chr7.1:37071087-37071106 | None:intergenic | 40.0% | |
| GGGAGTTGAATACAAGTATG+AGG | + | chr7.1:37069135-37069154 | MS.gene89262:CDS | 40.0% | |
| TGCTATTGAGGAAATGGAAG+TGG | + | chr7.1:37070867-37070886 | MS.gene89262:CDS | 40.0% | |
| TGCTTCTTGCAATGCTATGA+AGG | - | chr7.1:37070971-37070990 | None:intergenic | 40.0% | |
| TGGCTCCAATTGAATAGCTT+GGG | - | chr7.1:37071027-37071046 | None:intergenic | 40.0% | |
| TTGGCTCCAATTGAATAGCT+TGG | - | chr7.1:37071028-37071047 | None:intergenic | 40.0% | |
| ! | AAGGAAGAGGTGAAGCTTTT+TGG | + | chr7.1:37069061-37069080 | MS.gene89262:CDS | 40.0% |
| ! | AGAGGTGAAGCTTTTTGGAT+TGG | + | chr7.1:37069066-37069085 | MS.gene89262:CDS | 40.0% |
| ! | GGGAGTTTTTCCTTGACAAT+TGG | - | chr7.1:37071066-37071085 | None:intergenic | 40.0% |
| ! | GTTTTTCCTTGACAATTGGG+TGG | - | chr7.1:37071062-37071081 | None:intergenic | 40.0% |
| AAAGAGCCTTAGCTCGTTTC+TGG | + | chr7.1:37069326-37069345 | MS.gene89262:CDS | 45.0% | |
| TCATGATGTATGCACCCCAA+AGG | - | chr7.1:37070402-37070421 | None:intergenic | 45.0% | |
| ! | CGAGCTAAGGCTCTTTTGTA+AGG | - | chr7.1:37069322-37069341 | None:intergenic | 45.0% |
| !! | TAATAATAATATATATGAAT+AGG | - | chr7.1:37069911-37069930 | None:intergenic | 5.0% |
| !!! | AGTTTATTTTTTATTTTTTA+AGG | - | chr7.1:37070643-37070662 | None:intergenic | 5.0% |
| CTTGGTCCAGAAACGAGCTA+AGG | - | chr7.1:37069335-37069354 | None:intergenic | 50.0% | |
| TTCTTTGGTGGGGACGAGAT+TGG | + | chr7.1:37070925-37070944 | MS.gene89262:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 37069049 | 37071149 | 37069049 | ID=MS.gene89262 |
| chr7.1 | mRNA | 37069049 | 37071149 | 37069049 | ID=MS.gene89262.t1;Parent=MS.gene89262 |
| chr7.1 | exon | 37069049 | 37069369 | 37069049 | ID=MS.gene89262.t1.exon1;Parent=MS.gene89262.t1 |
| chr7.1 | CDS | 37069049 | 37069369 | 37069049 | ID=cds.MS.gene89262.t1;Parent=MS.gene89262.t1 |
| chr7.1 | exon | 37070811 | 37071149 | 37070811 | ID=MS.gene89262.t1.exon2;Parent=MS.gene89262.t1 |
| chr7.1 | CDS | 37070811 | 37071149 | 37070811 | ID=cds.MS.gene89262.t1;Parent=MS.gene89262.t1 |
| Gene Sequence |
| Protein sequence |
