Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055155.t1 | XP_003623168.1 | 97.7 | 219 | 5 | 0 | 1 | 219 | 1 | 219 | 6.50E-118 | 433.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055155.t1 | P32110 | 68.0 | 225 | 66 | 2 | 1 | 219 | 1 | 225 | 3.2e-81 | 302.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055155.t1 | G7L5L9 | 97.7 | 219 | 5 | 0 | 1 | 219 | 1 | 219 | 4.7e-118 | 433.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049283 | MS.gene055155 | 0.805587 | 1.24E-49 | -1.69E-46 |
| MS.gene055151 | MS.gene055155 | 0.809193 | 2.14E-50 | -1.69E-46 |
| MS.gene055155 | MS.gene065021 | 0.810958 | 8.90E-51 | -1.69E-46 |
| MS.gene055155 | MS.gene32411 | 0.815847 | 7.49E-52 | -1.69E-46 |
| MS.gene055155 | MS.gene39037 | 0.81065 | 1.04E-50 | -1.69E-46 |
| MS.gene055155 | MS.gene44909 | 0.834801 | 2.43E-56 | -1.69E-46 |
| MS.gene055155 | MS.gene46055 | 0.815234 | 1.03E-51 | -1.69E-46 |
| MS.gene055155 | MS.gene58440 | -0.80282 | 4.68E-49 | -1.69E-46 |
| MS.gene055155 | MS.gene58441 | -0.811055 | 8.48E-51 | -1.69E-46 |
| MS.gene055155 | MS.gene67301 | -0.803551 | 3.30E-49 | -1.69E-46 |
| MS.gene055155 | MS.gene89256 | 0.812183 | 4.82E-51 | -1.69E-46 |
| MS.gene055155 | MS.gene89262 | 0.909966 | 3.17E-82 | -1.69E-46 |
| MS.gene055155 | MS.gene91942 | 0.801448 | 8.96E-49 | -1.69E-46 |
| MS.gene055155 | MS.gene94259 | 0.803136 | 4.03E-49 | -1.69E-46 |
| MS.gene055155 | MS.gene94266 | 0.822641 | 2.12E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055155.t1 | MTR_7g065230 | 97.717 | 219 | 5 | 0 | 1 | 219 | 1 | 219 | 8.75e-158 | 435 |
| MS.gene055155.t1 | MTR_7g065290 | 80.804 | 224 | 38 | 1 | 1 | 219 | 1 | 224 | 9.75e-130 | 365 |
| MS.gene055155.t1 | MTR_7g065600 | 79.018 | 224 | 42 | 1 | 1 | 219 | 1 | 224 | 4.05e-127 | 358 |
| MS.gene055155.t1 | MTR_7g065590 | 79.911 | 224 | 40 | 1 | 1 | 219 | 1 | 224 | 7.08e-127 | 357 |
| MS.gene055155.t1 | MTR_7g065265 | 79.464 | 224 | 41 | 1 | 1 | 219 | 1 | 224 | 6.21e-126 | 355 |
| MS.gene055155.t1 | MTR_7g065270 | 75.893 | 224 | 49 | 1 | 1 | 219 | 1 | 224 | 2.87e-122 | 346 |
| MS.gene055155.t1 | MTR_7g065260 | 78.667 | 225 | 42 | 2 | 1 | 219 | 8 | 232 | 3.52e-116 | 331 |
| MS.gene055155.t1 | MTR_7g065630 | 70.776 | 219 | 63 | 1 | 1 | 218 | 19 | 237 | 2.74e-108 | 311 |
| MS.gene055155.t1 | MTR_7g065660 | 65.333 | 225 | 72 | 2 | 1 | 219 | 1 | 225 | 2.24e-101 | 293 |
| MS.gene055155.t1 | MTR_7g065720 | 65.333 | 225 | 72 | 2 | 1 | 219 | 1 | 225 | 6.89e-100 | 289 |
| MS.gene055155.t1 | MTR_4g019790 | 60.538 | 223 | 83 | 1 | 1 | 218 | 1 | 223 | 5.38e-96 | 279 |
| MS.gene055155.t1 | MTR_7g065750 | 62.389 | 226 | 78 | 3 | 1 | 219 | 1 | 226 | 2.24e-94 | 275 |
| MS.gene055155.t1 | MTR_7g065710 | 66.502 | 203 | 67 | 1 | 8 | 209 | 5 | 207 | 1.22e-93 | 273 |
| MS.gene055155.t1 | MTR_7g065680 | 67.890 | 218 | 69 | 1 | 1 | 217 | 1 | 218 | 1.11e-92 | 271 |
| MS.gene055155.t1 | MTR_7g065640 | 63.182 | 220 | 67 | 3 | 1 | 219 | 1 | 207 | 2.16e-92 | 270 |
| MS.gene055155.t1 | MTR_7g065740 | 59.375 | 224 | 85 | 2 | 1 | 218 | 1 | 224 | 6.20e-92 | 269 |
| MS.gene055155.t1 | MTR_7g065700 | 67.619 | 210 | 67 | 1 | 1 | 209 | 1 | 210 | 1.68e-89 | 263 |
| MS.gene055155.t1 | MTR_4g019780 | 59.535 | 215 | 80 | 3 | 2 | 210 | 3 | 216 | 1.03e-85 | 253 |
| MS.gene055155.t1 | MTR_1g090150 | 46.262 | 214 | 105 | 4 | 6 | 211 | 2 | 213 | 5.97e-60 | 188 |
| MS.gene055155.t1 | MTR_6g080440 | 47.297 | 222 | 107 | 4 | 7 | 219 | 3 | 223 | 1.76e-59 | 186 |
| MS.gene055155.t1 | MTR_1g115195 | 48.756 | 201 | 95 | 3 | 7 | 199 | 3 | 203 | 8.59e-58 | 182 |
| MS.gene055155.t1 | MTR_5g040430 | 44.595 | 222 | 110 | 4 | 1 | 210 | 1 | 221 | 9.93e-57 | 179 |
| MS.gene055155.t1 | MTR_1g090070 | 44.091 | 220 | 115 | 3 | 7 | 218 | 9 | 228 | 3.32e-56 | 178 |
| MS.gene055155.t1 | MTR_8g087410 | 44.796 | 221 | 115 | 4 | 4 | 218 | 3 | 222 | 4.12e-56 | 178 |
| MS.gene055155.t1 | MTR_3g099757 | 46.364 | 220 | 111 | 3 | 5 | 218 | 3 | 221 | 2.07e-55 | 176 |
| MS.gene055155.t1 | MTR_4g059730 | 42.593 | 216 | 115 | 3 | 6 | 213 | 3 | 217 | 3.03e-55 | 176 |
| MS.gene055155.t1 | MTR_8g087425 | 44.037 | 218 | 115 | 3 | 4 | 215 | 2 | 218 | 3.47e-55 | 176 |
| MS.gene055155.t1 | MTR_1g090060 | 44.344 | 221 | 114 | 4 | 7 | 219 | 3 | 222 | 4.17e-55 | 175 |
| MS.gene055155.t1 | MTR_1g090090 | 43.439 | 221 | 116 | 4 | 7 | 219 | 3 | 222 | 1.02e-54 | 174 |
| MS.gene055155.t1 | MTR_1g090100 | 43.379 | 219 | 115 | 4 | 8 | 218 | 3 | 220 | 7.97e-53 | 169 |
| MS.gene055155.t1 | MTR_8g061950 | 43.379 | 219 | 111 | 5 | 5 | 210 | 3 | 221 | 5.50e-49 | 160 |
| MS.gene055155.t1 | MTR_5g037380 | 42.925 | 212 | 106 | 5 | 1 | 199 | 1 | 210 | 5.46e-46 | 152 |
| MS.gene055155.t1 | MTR_2g070130 | 42.927 | 205 | 105 | 6 | 6 | 202 | 3 | 203 | 2.71e-43 | 145 |
| MS.gene055155.t1 | MTR_3g467420 | 42.723 | 213 | 111 | 7 | 1 | 204 | 1 | 211 | 4.44e-42 | 142 |
| MS.gene055155.t1 | MTR_2g070150 | 40.887 | 203 | 112 | 5 | 6 | 202 | 3 | 203 | 7.38e-42 | 141 |
| MS.gene055155.t1 | MTR_2g070200 | 49.032 | 155 | 77 | 2 | 6 | 158 | 3 | 157 | 4.43e-41 | 139 |
| MS.gene055155.t1 | MTR_3g467430 | 41.346 | 208 | 113 | 6 | 4 | 204 | 6 | 211 | 1.70e-39 | 135 |
| MS.gene055155.t1 | MTR_4g124130 | 45.312 | 192 | 90 | 7 | 6 | 187 | 3 | 189 | 2.85e-39 | 135 |
| MS.gene055155.t1 | MTR_2g070140 | 39.896 | 193 | 108 | 5 | 21 | 207 | 2 | 192 | 3.60e-39 | 134 |
| MS.gene055155.t1 | MTR_2g070210 | 39.524 | 210 | 117 | 6 | 6 | 207 | 3 | 210 | 5.36e-39 | 134 |
| MS.gene055155.t1 | MTR_2g070120 | 38.235 | 204 | 116 | 5 | 6 | 202 | 3 | 203 | 5.72e-39 | 134 |
| MS.gene055155.t1 | MTR_8g056940 | 40.865 | 208 | 110 | 7 | 16 | 213 | 13 | 217 | 3.49e-38 | 132 |
| MS.gene055155.t1 | MTR_2g070180 | 39.378 | 193 | 109 | 5 | 16 | 202 | 13 | 203 | 5.72e-38 | 131 |
| MS.gene055155.t1 | MTR_5g076900 | 38.208 | 212 | 121 | 5 | 3 | 207 | 2 | 210 | 2.23e-36 | 127 |
| MS.gene055155.t1 | MTR_2g070070 | 37.788 | 217 | 125 | 5 | 7 | 216 | 4 | 217 | 6.37e-35 | 124 |
| MS.gene055155.t1 | MTR_2g070060 | 37.019 | 208 | 121 | 5 | 7 | 207 | 4 | 208 | 6.58e-35 | 123 |
| MS.gene055155.t1 | MTR_0186s0030 | 47.692 | 130 | 66 | 2 | 16 | 144 | 13 | 141 | 6.96e-32 | 113 |
| MS.gene055155.t1 | MTR_2g070110 | 39.698 | 199 | 111 | 5 | 7 | 199 | 4 | 199 | 7.86e-28 | 105 |
| MS.gene055155.t1 | MTR_2g072120 | 45.455 | 66 | 35 | 1 | 51 | 115 | 2 | 67 | 6.47e-16 | 70.1 |
| MS.gene055155.t1 | MTR_4g134370 | 29.437 | 231 | 136 | 8 | 1 | 208 | 1 | 227 | 1.13e-13 | 68.2 |
| MS.gene055155.t1 | MTR_4g134380 | 29.381 | 194 | 118 | 7 | 21 | 199 | 29 | 218 | 3.96e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055155.t1 | AT3G09270 | 50.446 | 224 | 102 | 5 | 3 | 218 | 2 | 224 | 9.60e-69 | 210 |
| MS.gene055155.t1 | AT2G29420 | 49.091 | 220 | 103 | 4 | 3 | 215 | 5 | 222 | 1.28e-68 | 210 |
| MS.gene055155.t1 | AT2G29490 | 49.282 | 209 | 98 | 3 | 1 | 202 | 1 | 208 | 4.64e-59 | 186 |
| MS.gene055155.t1 | AT2G29480 | 47.111 | 225 | 111 | 3 | 1 | 218 | 1 | 224 | 5.06e-59 | 186 |
| MS.gene055155.t1 | AT2G29450 | 46.637 | 223 | 112 | 3 | 3 | 218 | 2 | 224 | 7.18e-59 | 185 |
| MS.gene055155.t1 | AT2G29460 | 45.778 | 225 | 114 | 4 | 1 | 218 | 1 | 224 | 5.04e-56 | 178 |
| MS.gene055155.t1 | AT2G29470 | 44.601 | 213 | 109 | 4 | 1 | 205 | 1 | 212 | 2.67e-53 | 171 |
| MS.gene055155.t1 | AT2G29440 | 45.283 | 212 | 107 | 5 | 1 | 205 | 1 | 210 | 3.32e-51 | 166 |
| MS.gene055155.t1 | AT1G69930 | 39.732 | 224 | 124 | 3 | 2 | 214 | 7 | 230 | 6.41e-51 | 165 |
| MS.gene055155.t1 | AT1G10370 | 44.550 | 211 | 103 | 5 | 1 | 199 | 1 | 209 | 1.68e-50 | 164 |
| MS.gene055155.t1 | AT1G59700 | 45.415 | 229 | 109 | 7 | 5 | 217 | 4 | 232 | 7.33e-50 | 162 |
| MS.gene055155.t1 | AT1G59670 | 43.750 | 208 | 104 | 5 | 5 | 199 | 4 | 211 | 1.76e-47 | 156 |
| MS.gene055155.t1 | AT1G74590 | 38.362 | 232 | 128 | 5 | 1 | 218 | 1 | 231 | 4.20e-46 | 152 |
| MS.gene055155.t1 | AT1G27130 | 40.000 | 225 | 121 | 6 | 1 | 212 | 1 | 224 | 8.56e-46 | 152 |
| MS.gene055155.t1 | AT1G10360 | 39.806 | 206 | 112 | 4 | 6 | 199 | 4 | 209 | 3.34e-45 | 150 |
| MS.gene055155.t1 | AT5G62480 | 40.367 | 218 | 114 | 5 | 8 | 210 | 9 | 225 | 6.64e-45 | 150 |
| MS.gene055155.t1 | AT1G27140 | 38.158 | 228 | 124 | 6 | 1 | 213 | 1 | 226 | 1.91e-44 | 149 |
| MS.gene055155.t1 | AT1G78340 | 44.340 | 212 | 111 | 6 | 6 | 211 | 3 | 213 | 4.75e-44 | 147 |
| MS.gene055155.t1 | AT1G78370 | 42.424 | 198 | 106 | 5 | 16 | 207 | 13 | 208 | 2.74e-42 | 142 |
| MS.gene055155.t1 | AT1G17170 | 42.396 | 217 | 116 | 6 | 6 | 216 | 3 | 216 | 4.73e-42 | 142 |
| MS.gene055155.t1 | AT1G69920 | 37.719 | 228 | 127 | 5 | 1 | 213 | 26 | 253 | 5.96e-42 | 142 |
| MS.gene055155.t1 | AT1G78380 | 41.827 | 208 | 111 | 5 | 7 | 207 | 4 | 208 | 2.32e-41 | 140 |
| MS.gene055155.t1 | AT1G78320 | 41.346 | 208 | 112 | 5 | 5 | 205 | 2 | 206 | 3.06e-41 | 140 |
| MS.gene055155.t1 | AT1G53680 | 39.048 | 210 | 118 | 5 | 1 | 202 | 1 | 208 | 7.62e-38 | 131 |
| MS.gene055155.t1 | AT1G17180 | 40.580 | 207 | 117 | 6 | 6 | 207 | 3 | 208 | 8.17e-37 | 129 |
| MS.gene055155.t1 | AT3G43800 | 38.350 | 206 | 115 | 7 | 4 | 199 | 2 | 205 | 2.13e-35 | 125 |
| MS.gene055155.t1 | AT1G78360 | 40.670 | 209 | 113 | 6 | 7 | 207 | 4 | 209 | 2.07e-34 | 122 |
| MS.gene055155.t1 | AT1G17190 | 41.176 | 187 | 104 | 6 | 6 | 187 | 4 | 189 | 1.67e-33 | 120 |
| MS.gene055155.t1 | AT5G62480 | 31.797 | 217 | 108 | 5 | 8 | 210 | 9 | 199 | 6.01e-27 | 103 |
| MS.gene055155.t1 | AT5G62480 | 31.797 | 217 | 107 | 5 | 8 | 210 | 9 | 198 | 1.28e-26 | 102 |
| MS.gene055155.t1 | AT1G78320 | 33.816 | 207 | 102 | 5 | 5 | 205 | 2 | 179 | 3.44e-24 | 95.1 |
| MS.gene055155.t1 | AT2G02380 | 30.189 | 212 | 130 | 7 | 5 | 202 | 9 | 216 | 5.36e-18 | 79.7 |
| MS.gene055155.t1 | AT2G02390 | 30.841 | 214 | 130 | 6 | 3 | 202 | 4 | 213 | 7.74e-18 | 79.3 |
| MS.gene055155.t1 | AT2G02390 | 30.317 | 221 | 129 | 7 | 3 | 202 | 4 | 220 | 1.14e-16 | 76.3 |
| MS.gene055155.t1 | AT2G02390 | 32.353 | 170 | 102 | 4 | 3 | 160 | 4 | 172 | 1.92e-14 | 69.3 |
Find 49 sgRNAs with CRISPR-Local
Find 111 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGAGCCTTAGCTCGTTTC+TGG | 0.128575 | 7.4:+39429468 | MS.gene055155:CDS |
| CCCTCCCAAAGAAACTTATT+TGG | 0.190799 | 7.4:+39431172 | MS.gene055155:CDS |
| GAAAGCCAAATAAGTTTCTT+TGG | 0.223467 | 7.4:-39431177 | None:intergenic |
| TTGGGTGGTTATTGAAGTTT+TGG | 0.282844 | 7.4:-39431133 | None:intergenic |
| TAAGGATCAGAAGGCAATAT+TGG | 0.299422 | 7.4:-39429443 | None:intergenic |
| ACAGGAACCTTCTTATAAAC+AGG | 0.304362 | 7.4:-39429344 | None:intergenic |
| GAGCTCAAGGACAAATTCTT+TGG | 0.339009 | 7.4:+39430999 | MS.gene055155:CDS |
| AAAGCCAAATAAGTTTCTTT+GGG | 0.353412 | 7.4:-39431176 | None:intergenic |
| TGAGAATGCTATTGAGGAAA+TGG | 0.394079 | 7.4:+39430950 | MS.gene055155:CDS |
| TGGCTCCAATTGAATAGCTT+GGG | 0.415400 | 7.4:-39431113 | None:intergenic |
| TTCTTTGGTGGGGACGAGAT+TGG | 0.423311 | 7.4:+39431014 | MS.gene055155:CDS |
| AATTTCCCAAGCTATTCAAT+TGG | 0.430707 | 7.4:+39431108 | MS.gene055155:CDS |
| ATCTCCACCCTTGTTACAAA+TGG | 0.430811 | 7.4:-39429239 | None:intergenic |
| TGCTTCTTGCAATGCTATGA+AGG | 0.431490 | 7.4:-39431057 | None:intergenic |
| ATCACAAGGGATTCTGATAT+AGG | 0.433145 | 7.4:-39429386 | None:intergenic |
| GACCAAGTTCATAGATGATA+AGG | 0.434027 | 7.4:+39429490 | MS.gene055155:CDS |
| GGAGATTGCTCTAAAATTGA+AGG | 0.444678 | 7.4:+39429256 | MS.gene055155:CDS |
| TTGGCTCCAATTGAATAGCT+TGG | 0.457895 | 7.4:-39431114 | None:intergenic |
| CAAGTATGAGGAAGAAAAGT+GGG | 0.461699 | 7.4:+39429289 | MS.gene055155:CDS |
| ATACAACCCTGTTTATAAGA+AGG | 0.470144 | 7.4:+39429337 | MS.gene055155:CDS |
| TACCTTATCATCTATGAACT+TGG | 0.479710 | 7.4:-39429492 | None:intergenic |
| GGGAGTTGAATACAAGTATG+AGG | 0.484614 | 7.4:+39429277 | MS.gene055155:CDS |
| CCAAATAAGTTTCTTTGGGA+GGG | 0.492363 | 7.4:-39431172 | None:intergenic |
| GCCAAATAAGTTTCTTTGGG+AGG | 0.495208 | 7.4:-39431173 | None:intergenic |
| ATAGCATTGCAAGAAGCAAT+GGG | 0.504072 | 7.4:+39431062 | MS.gene055155:CDS |
| TTGAGTATATTGATGAGACT+TGG | 0.504629 | 7.4:+39429411 | MS.gene055155:CDS |
| CTCAAGGACAAATTCTTTGG+TGG | 0.512720 | 7.4:+39431002 | MS.gene055155:CDS |
| CATAGCATTGCAAGAAGCAA+TGG | 0.516226 | 7.4:+39431061 | MS.gene055155:CDS |
| TTATCATTATGAACTAATAC+AGG | 0.517988 | 7.4:-39429362 | None:intergenic |
| AGAACGTGAGAATGCTATTG+AGG | 0.521783 | 7.4:+39430944 | MS.gene055155:CDS |
| TCAAGGACAAATTCTTTGGT+GGG | 0.532263 | 7.4:+39431003 | MS.gene055155:CDS |
| TGCTATTGAGGAAATGGAAG+TGG | 0.535112 | 7.4:+39430956 | MS.gene055155:CDS |
| ACAAGTATGAGGAAGAAAAG+TGG | 0.564735 | 7.4:+39429288 | MS.gene055155:CDS |
| TAGAAAGTCCATTTGTAACA+AGG | 0.577928 | 7.4:+39429231 | MS.gene055155:CDS |
| CAGGAACCTTCTTATAAACA+GGG | 0.585709 | 7.4:-39429343 | None:intergenic |
| ATTTCTCGAGAATGAGCTCA+AGG | 0.587226 | 7.4:+39430986 | MS.gene055155:CDS |
| CAAGGACAAATTCTTTGGTG+GGG | 0.589077 | 7.4:+39431004 | MS.gene055155:CDS |
| GATGGCATCAAACAAGGAAG+AGG | 0.596993 | 7.4:+39429190 | None:intergenic |
| TGCAACGATGGCATCAAACA+AGG | 0.599109 | 7.4:+39429184 | None:intergenic |
| CAATATACTCAAGAATCACA+AGG | 0.601780 | 7.4:-39429400 | None:intergenic |
| CAATAACCACCCAATTGTCA+AGG | 0.611678 | 7.4:+39431142 | MS.gene055155:CDS |
| AGAAAGTCCATTTGTAACAA+GGG | 0.613221 | 7.4:+39429232 | MS.gene055155:CDS |
| GAGATTGCTCTAAAATTGAA+GGG | 0.615792 | 7.4:+39429257 | MS.gene055155:CDS |
| AAGTCCATTTGTAACAAGGG+TGG | 0.625280 | 7.4:+39429235 | MS.gene055155:CDS |
| AAGTATGAGGAAGAAAAGTG+GGG | 0.629580 | 7.4:+39429290 | MS.gene055155:CDS |
| CTTGGTCCAGAAACGAGCTA+AGG | 0.632263 | 7.4:-39429474 | None:intergenic |
| GACAGTGTTTGAATGTTATG+CGG | 0.672533 | 7.4:+39430895 | MS.gene055155:intron |
| AATATACTCAAGAATCACAA+GGG | 0.678725 | 7.4:-39429399 | None:intergenic |
| AGTATGAGGAAGAAAAGTGG+GGG | 0.714879 | 7.4:+39429291 | MS.gene055155:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATTAATAAAAAATTAA+AGG | - | chr7.4:39430414-39430433 | None:intergenic | 0.0% |
| !! | AAACTTAGTTATAATTATAT+AGG | + | chr7.4:39430504-39430523 | MS.gene055155:intron | 10.0% |
| !!! | AGATAAATTAATTCATATTT+TGG | - | chr7.4:39430730-39430749 | None:intergenic | 10.0% |
| !!! | ATTACATTAATTTTTTTTGA+AGG | - | chr7.4:39430303-39430322 | None:intergenic | 10.0% |
| !! | TAAAATATGTTATGTGATTA+TGG | + | chr7.4:39429805-39429824 | MS.gene055155:intron | 15.0% |
| !! | TGTAATTGAAAATACAAAAA+AGG | + | chr7.4:39430317-39430336 | MS.gene055155:intron | 15.0% |
| !!! | ATGTTGATAAAAAGAAATTA+AGG | + | chr7.4:39430275-39430294 | MS.gene055155:intron | 15.0% |
| !!! | ATTCACATTTAATTTATGTT+TGG | - | chr7.4:39430024-39430043 | None:intergenic | 15.0% |
| !! | AAAAAGATAATAAGTTGTTG+TGG | + | chr7.4:39430635-39430654 | MS.gene055155:intron | 20.0% |
| !! | AAAAGATAATAAGTTGTTGT+GGG | + | chr7.4:39430636-39430655 | MS.gene055155:intron | 20.0% |
| !! | AATCCCTAAGATAATTTATT+TGG | - | chr7.4:39430201-39430220 | None:intergenic | 20.0% |
| !! | CATCCAAATAAATTATCTTA+GGG | + | chr7.4:39430195-39430214 | MS.gene055155:intron | 20.0% |
| !! | CCAAAAAGATCTTATATTTA+GGG | + | chr7.4:39430365-39430384 | MS.gene055155:intron | 20.0% |
| !! | TCATCCAAATAAATTATCTT+AGG | + | chr7.4:39430194-39430213 | MS.gene055155:intron | 20.0% |
| !! | TGTTGAATCACAAATTATTT+AGG | - | chr7.4:39430112-39430131 | None:intergenic | 20.0% |
| !! | TTATCATTATGAACTAATAC+AGG | - | chr7.4:39429365-39429384 | None:intergenic | 20.0% |
| !!! | AAAATATTTTGTGTACCTTT+GGG | + | chr7.4:39430527-39430546 | MS.gene055155:intron | 20.0% |
| !!! | AATTGTAAGCAAAAAACTTT+TGG | - | chr7.4:39429911-39429930 | None:intergenic | 20.0% |
| !!! | ACAAAAAAGGTCTTATAAAA+AGG | + | chr7.4:39430330-39430349 | MS.gene055155:intron | 20.0% |
| !!! | CAAAAAAGGTCTTATAAAAA+GGG | + | chr7.4:39430331-39430350 | MS.gene055155:intron | 20.0% |
| !!! | CCTAAATATAAGATCTTTTT+GGG | - | chr7.4:39430367-39430386 | None:intergenic | 20.0% |
| ! | AAAAATTAAAGGTGACAATG+AGG | - | chr7.4:39430403-39430422 | None:intergenic | 25.0% |
| ! | AAAATTAAAGGTGACAATGA+GGG | - | chr7.4:39430402-39430421 | None:intergenic | 25.0% |
| ! | AAAGATAATAAGTTGTTGTG+GGG | + | chr7.4:39430637-39430656 | MS.gene055155:intron | 25.0% |
| ! | AAAGCCAAATAAGTTTCTTT+GGG | - | chr7.4:39431179-39431198 | None:intergenic | 25.0% |
| ! | AATATACTCAAGAATCACAA+GGG | - | chr7.4:39429402-39429421 | None:intergenic | 25.0% |
| ! | AATATGGCAGAGTAAATATA+GGG | - | chr7.4:39429559-39429578 | None:intergenic | 25.0% |
| ! | ATTTATTTGGATGAACAACA+AGG | - | chr7.4:39430188-39430207 | None:intergenic | 25.0% |
| ! | CCCAAAAAGATCTTATATTT+AGG | + | chr7.4:39430364-39430383 | MS.gene055155:intron | 25.0% |
| ! | TAAGCAGAAAATATTAGAAG+AGG | - | chr7.4:39429526-39429545 | None:intergenic | 25.0% |
| !! | AAATATTTTGTGTACCTTTG+GGG | + | chr7.4:39430528-39430547 | MS.gene055155:intron | 25.0% |
| !! | ATTTTATGTCGATGTCTAAA+TGG | - | chr7.4:39429791-39429810 | None:intergenic | 25.0% |
| !! | CCCTAAATATAAGATCTTTT+TGG | - | chr7.4:39430368-39430387 | None:intergenic | 25.0% |
| !! | GAAAATATTTTGTGTACCTT+TGG | + | chr7.4:39430526-39430545 | MS.gene055155:intron | 25.0% |
| !!! | GTCTAAATGGTTTTTATTTG+AGG | - | chr7.4:39429778-39429797 | None:intergenic | 25.0% |
| AAACACTCTTTCCTTGAAAA+AGG | + | chr7.4:39430463-39430482 | MS.gene055155:intron | 30.0% | |
| AAATTAAAGGTGACAATGAG+GGG | - | chr7.4:39430401-39430420 | None:intergenic | 30.0% | |
| AACACTCTTTCCTTGAAAAA+GGG | + | chr7.4:39430464-39430483 | MS.gene055155:intron | 30.0% | |
| AACATTGAATTATGCTAGTC+GGG | + | chr7.4:39429609-39429628 | MS.gene055155:intron | 30.0% | |
| AAGATAATAAGTTGTTGTGG+GGG | + | chr7.4:39430638-39430657 | MS.gene055155:intron | 30.0% | |
| AAGTTATGCTAAAGGGAATA+TGG | - | chr7.4:39429575-39429594 | None:intergenic | 30.0% | |
| AATTTCCCAAGCTATTCAAT+TGG | + | chr7.4:39431108-39431127 | MS.gene055155:CDS | 30.0% | |
| ACCATCTAAGTTATGCTAAA+GGG | - | chr7.4:39429582-39429601 | None:intergenic | 30.0% | |
| AGAAAGTCCATTTGTAACAA+GGG | + | chr7.4:39429232-39429251 | MS.gene055155:CDS | 30.0% | |
| ATACAACCCTGTTTATAAGA+AGG | + | chr7.4:39429337-39429356 | MS.gene055155:CDS | 30.0% | |
| CAATATACTCAAGAATCACA+AGG | - | chr7.4:39429403-39429422 | None:intergenic | 30.0% | |
| CACAAAGAAAAATAGAAGAG+TGG | - | chr7.4:39429717-39429736 | None:intergenic | 30.0% | |
| CTAAGTTTGAGCTCAATTTA+AGG | - | chr7.4:39430492-39430511 | None:intergenic | 30.0% | |
| CTTTGTGTAACTCTAGTATA+AGG | + | chr7.4:39429730-39429749 | MS.gene055155:intron | 30.0% | |
| GAAAGCCAAATAAGTTTCTT+TGG | - | chr7.4:39431180-39431199 | None:intergenic | 30.0% | |
| GAACATTGAATTATGCTAGT+CGG | + | chr7.4:39429608-39429627 | MS.gene055155:intron | 30.0% | |
| GAATATGGCAGAGTAAATAT+AGG | - | chr7.4:39429560-39429579 | None:intergenic | 30.0% | |
| TACCATCTAAGTTATGCTAA+AGG | - | chr7.4:39429583-39429602 | None:intergenic | 30.0% | |
| TACCTTATCATCTATGAACT+TGG | - | chr7.4:39429495-39429514 | None:intergenic | 30.0% | |
| TAGAAAGTCCATTTGTAACA+AGG | + | chr7.4:39429231-39429250 | MS.gene055155:CDS | 30.0% | |
| TATGAGTGTACACATATCTT+TGG | + | chr7.4:39430675-39430694 | MS.gene055155:intron | 30.0% | |
| TGATCTCAAATATACGAACT+TGG | - | chr7.4:39430149-39430168 | None:intergenic | 30.0% | |
| TTGAGTATATTGATGAGACT+TGG | + | chr7.4:39429411-39429430 | MS.gene055155:CDS | 30.0% | |
| ! | AAAAGTCGAAGGAAACTTTT+AGG | - | chr7.4:39429882-39429901 | None:intergenic | 30.0% |
| ! | GTTCGTATATTTGAGATCAT+AGG | + | chr7.4:39430150-39430169 | MS.gene055155:intron | 30.0% |
| !! | ATTTAAGGAACCCTTTTTCA+AGG | - | chr7.4:39430477-39430496 | None:intergenic | 30.0% |
| !! | GAGATTGCTCTAAAATTGAA+GGG | + | chr7.4:39429257-39429276 | MS.gene055155:CDS | 30.0% |
| AAGTATGAGGAAGAAAAGTG+GGG | + | chr7.4:39429290-39429309 | MS.gene055155:CDS | 35.0% | |
| ACAAGTATGAGGAAGAAAAG+TGG | + | chr7.4:39429288-39429307 | MS.gene055155:CDS | 35.0% | |
| ACAGGAACCTTCTTATAAAC+AGG | - | chr7.4:39429347-39429366 | None:intergenic | 35.0% | |
| ACATTGAATTATGCTAGTCG+GGG | + | chr7.4:39429610-39429629 | MS.gene055155:intron | 35.0% | |
| ATAGCATTGCAAGAAGCAAT+GGG | + | chr7.4:39431062-39431081 | MS.gene055155:CDS | 35.0% | |
| ATCACAAGGGATTCTGATAT+AGG | - | chr7.4:39429389-39429408 | None:intergenic | 35.0% | |
| CAAGTATGAGGAAGAAAAGT+GGG | + | chr7.4:39429289-39429308 | MS.gene055155:CDS | 35.0% | |
| CAGGAACCTTCTTATAAACA+GGG | - | chr7.4:39429346-39429365 | None:intergenic | 35.0% | |
| GACAGTGTTTGAATGTTATG+CGG | + | chr7.4:39430895-39430914 | MS.gene055155:intron | 35.0% | |
| GACCAAGTTCATAGATGATA+AGG | + | chr7.4:39429490-39429509 | MS.gene055155:CDS | 35.0% | |
| GATAAAGAGACATAACGAAG+CGG | + | chr7.4:39430567-39430586 | MS.gene055155:intron | 35.0% | |
| TAAGGATCAGAAGGCAATAT+TGG | - | chr7.4:39429446-39429465 | None:intergenic | 35.0% | |
| TCAAGGACAAATTCTTTGGT+GGG | + | chr7.4:39431003-39431022 | MS.gene055155:CDS | 35.0% | |
| TCCCTTTAGCATAACTTAGA+TGG | + | chr7.4:39429578-39429597 | MS.gene055155:intron | 35.0% | |
| TGAGAATGCTATTGAGGAAA+TGG | + | chr7.4:39430950-39430969 | MS.gene055155:CDS | 35.0% | |
| TTTGGAGAACTAAAAGTCGA+AGG | - | chr7.4:39429893-39429912 | None:intergenic | 35.0% | |
| ! | CCAAATAAGTTTCTTTGGGA+GGG | - | chr7.4:39431175-39431194 | None:intergenic | 35.0% |
| ! | GGAGTTTTTCCTTGACAATT+GGG | - | chr7.4:39431154-39431173 | None:intergenic | 35.0% |
| ! | TTGGGTGGTTATTGAAGTTT+TGG | - | chr7.4:39431136-39431155 | None:intergenic | 35.0% |
| !! | GGAGATTGCTCTAAAATTGA+AGG | + | chr7.4:39429256-39429275 | MS.gene055155:CDS | 35.0% |
| AAGTCCATTTGTAACAAGGG+TGG | + | chr7.4:39429235-39429254 | MS.gene055155:CDS | 40.0% | |
| AGAACGTGAGAATGCTATTG+AGG | + | chr7.4:39430944-39430963 | MS.gene055155:CDS | 40.0% | |
| AGTATGAGGAAGAAAAGTGG+GGG | + | chr7.4:39429291-39429310 | MS.gene055155:CDS | 40.0% | |
| ATCTCCACCCTTGTTACAAA+TGG | - | chr7.4:39429242-39429261 | None:intergenic | 40.0% | |
| ATTTCTCGAGAATGAGCTCA+AGG | + | chr7.4:39430986-39431005 | MS.gene055155:CDS | 40.0% | |
| CAAGGACAAATTCTTTGGTG+GGG | + | chr7.4:39431004-39431023 | MS.gene055155:CDS | 40.0% | |
| CAATAACCACCCAATTGTCA+AGG | + | chr7.4:39431142-39431161 | MS.gene055155:CDS | 40.0% | |
| CATAGCATTGCAAGAAGCAA+TGG | + | chr7.4:39431061-39431080 | MS.gene055155:CDS | 40.0% | |
| CCCTCCCAAAGAAACTTATT+TGG | + | chr7.4:39431172-39431191 | MS.gene055155:CDS | 40.0% | |
| CTCAAGGACAAATTCTTTGG+TGG | + | chr7.4:39431002-39431021 | MS.gene055155:CDS | 40.0% | |
| GAGCTCAAGGACAAATTCTT+TGG | + | chr7.4:39430999-39431018 | MS.gene055155:CDS | 40.0% | |
| GCCAAATAAGTTTCTTTGGG+AGG | - | chr7.4:39431176-39431195 | None:intergenic | 40.0% | |
| GGGAGTTGAATACAAGTATG+AGG | + | chr7.4:39429277-39429296 | MS.gene055155:CDS | 40.0% | |
| TGCTATTGAGGAAATGGAAG+TGG | + | chr7.4:39430956-39430975 | MS.gene055155:CDS | 40.0% | |
| TGCTTCTTGCAATGCTATGA+AGG | - | chr7.4:39431060-39431079 | None:intergenic | 40.0% | |
| TGGCTCCAATTGAATAGCTT+GGG | - | chr7.4:39431116-39431135 | None:intergenic | 40.0% | |
| TTGGCTCCAATTGAATAGCT+TGG | - | chr7.4:39431117-39431136 | None:intergenic | 40.0% | |
| ! | AAGGAAGAGGTGAAGCTTTT+TGG | + | chr7.4:39429203-39429222 | MS.gene055155:CDS | 40.0% |
| ! | AGAGGTGAAGCTTTTTGGAT+TGG | + | chr7.4:39429208-39429227 | MS.gene055155:CDS | 40.0% |
| ! | GCTCTTTTGTAAGGATCAGA+AGG | - | chr7.4:39429455-39429474 | None:intergenic | 40.0% |
| ! | GGGAGTTTTTCCTTGACAAT+TGG | - | chr7.4:39431155-39431174 | None:intergenic | 40.0% |
| ! | GTTTTTCCTTGACAATTGGG+TGG | - | chr7.4:39431151-39431170 | None:intergenic | 40.0% |
| AAAGAGCCTTAGCTCGTTTC+TGG | + | chr7.4:39429468-39429487 | MS.gene055155:CDS | 45.0% | |
| TCATGATGTATGCACCCCAA+AGG | - | chr7.4:39430545-39430564 | None:intergenic | 45.0% | |
| ! | CGAGCTAAGGCTCTTTTGTA+AGG | - | chr7.4:39429464-39429483 | None:intergenic | 45.0% |
| !! | TAATAATAATATATATGAAT+AGG | - | chr7.4:39430053-39430072 | None:intergenic | 5.0% |
| !!! | AGTTTATTTTTTATTTTTTA+AGG | - | chr7.4:39430786-39430805 | None:intergenic | 5.0% |
| CTTGGTCCAGAAACGAGCTA+AGG | - | chr7.4:39429477-39429496 | None:intergenic | 50.0% | |
| TTCTTTGGTGGGGACGAGAT+TGG | + | chr7.4:39431014-39431033 | MS.gene055155:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 39429191 | 39431238 | 39429191 | ID=MS.gene055155 |
| chr7.4 | mRNA | 39429191 | 39431238 | 39429191 | ID=MS.gene055155.t1;Parent=MS.gene055155 |
| chr7.4 | exon | 39429191 | 39429511 | 39429191 | ID=MS.gene055155.t1.exon1;Parent=MS.gene055155.t1 |
| chr7.4 | CDS | 39429191 | 39429511 | 39429191 | ID=cds.MS.gene055155.t1;Parent=MS.gene055155.t1 |
| chr7.4 | exon | 39430900 | 39431238 | 39430900 | ID=MS.gene055155.t1.exon2;Parent=MS.gene055155.t1 |
| chr7.4 | CDS | 39430900 | 39431238 | 39430900 | ID=cds.MS.gene055155.t1;Parent=MS.gene055155.t1 |
| Gene Sequence |
| Protein sequence |
