AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene89294

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene89294.t1 MTR_8g106170 85.732 792 59 7 11 751 16 804 0.0 1160
MS.gene89294.t1 MTR_7g063860 81.858 452 51 3 306 751 1 427 0.0 535
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene89294.t1 AT1G14650 63.502 811 206 18 1 751 5 785 0.0 844
MS.gene89294.t1 AT1G14650 63.502 811 206 18 1 751 5 785 0.0 844
MS.gene89294.t1 AT1G14650 63.502 811 206 18 1 751 5 785 0.0 844
MS.gene89294.t1 AT1G14640 58.112 752 256 17 1 714 5 735 0.0 698
MS.gene89294.t1 AT1G14640 58.112 752 256 17 1 714 5 735 0.0 698
MS.gene89294.t1 AT4G16200 34.767 279 116 7 33 245 10 288 6.79e-34 132
MS.gene89294.t1 AT5G06520 35.317 252 114 10 34 281 391 597 1.10e-31 132
MS.gene89294.t1 AT5G06520 31.765 170 93 5 149 316 79 227 1.10e-12 72.0
MS.gene89294.t1 AT5G12280 48.966 145 53 3 598 742 294 417 2.09e-30 125
MS.gene89294.t1 AT5G12280 27.092 251 137 5 40 289 89 294 1.92e-12 70.5
MS.gene89294.t1 AT5G06890 54.667 75 22 3 669 742 2 65 6.48e-15 70.5
MS.gene89294.t1 AT2G43960 27.519 258 153 8 40 288 9 241 6.69e-15 78.2
MS.gene89294.t1 AT3G49130 36.066 183 89 9 136 308 39 203 4.83e-14 74.3

Find 235 sgRNAs with CRISPR-Local

Find 258 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTCTGACATTTCACTATT+AGG 0.211420 7.1:+37721286 None:intergenic
CAGAGTGGTTTCTCGTATTT+TGG 0.223336 7.1:+37721207 None:intergenic
TACTTCATCCTCTTTGGTTC+TGG 0.241819 7.1:+37720545 None:intergenic
GATCCCTGAGGATAAATTTC+TGG 0.243440 7.1:-37720507 MS.gene89294:CDS
AGATTTCCTTCATCAAAATT+AGG 0.258736 7.1:+37720446 None:intergenic
CTCTTTGGTTCTGGTTCCTC+TGG 0.261880 7.1:+37720554 None:intergenic
AGCAACCTAAGCAGGTTATA+TGG 0.279454 7.1:-37721060 MS.gene89294:CDS
GATAGGAGAAACCACAAATT+TGG 0.286635 7.1:+37721324 None:intergenic
TTGGTTTCATGAAATGAAAT+TGG 0.291074 7.1:+37721899 None:intergenic
GGGAACGAGAGCTGCTAGTT+TGG 0.298170 7.1:-37721467 MS.gene89294:CDS
CTGAGACGCTTTATCGATAA+TGG 0.312615 7.1:+37722323 None:intergenic
GGATCAAGTACTTTCTTTAC+TGG 0.315349 7.1:+37722066 None:intergenic
CTCAATTTCTGCTTGTTAGC+AGG 0.319229 7.1:+37720335 None:intergenic
TGGTTTCATGAAATGAAATT+GGG 0.327351 7.1:+37721900 None:intergenic
GGCATTCCTTGGTTATTCAT+AGG 0.329052 7.1:+37720722 None:intergenic
ATTGGAAGGCCAATACTATT+AGG 0.329277 7.1:+37720812 None:intergenic
TCTTTCTGTTCTTTGTACTT+AGG 0.329702 7.1:+37721241 None:intergenic
GCTTCCTCAGGAGGCGGCGG+TGG 0.330227 7.1:+37720590 None:intergenic
TCGTCATACTTCATCCTCTT+TGG 0.331389 7.1:+37720539 None:intergenic
AAGGGAAGAAGAGTGAAGTC+AGG 0.334414 7.1:-37721432 MS.gene89294:CDS
AGCTTCTCTGTCAACCCCTT+TGG 0.339349 7.1:+37721814 None:intergenic
CAAGCAATGTCACAAAATAT+TGG 0.348373 7.1:-37721001 MS.gene89294:CDS
TACAAATTGCTATGATTGAT+TGG 0.348644 7.1:-37721675 MS.gene89294:CDS
TGGTTATTCATAGGAATTGA+TGG 0.349393 7.1:+37720731 None:intergenic
ACATCGATACTATCAGTTTC+CGG 0.350605 7.1:+37722129 None:intergenic
CCTCCCACTGATGGAAATCT+TGG 0.352504 7.1:-37722435 MS.gene89294:CDS
CGATTAGGATTGTGAATAAC+TGG 0.353048 7.1:-37721387 MS.gene89294:CDS
TTAAACCGGGCAGAAATATC+AGG 0.353449 7.1:+37722090 None:intergenic
TCCTCCCTTGTAATGCCTTC+AGG 0.361482 7.1:+37722012 None:intergenic
CACAATTTGTGGCTCGTAAT+GGG 0.363738 7.1:-37721966 MS.gene89294:CDS
CTTTCTTTACTGGTTTAAAC+CGG 0.371124 7.1:+37722076 None:intergenic
ACAAGAGCACTCTAGGAAAA+AGG 0.374143 7.1:-37721725 MS.gene89294:CDS
GTGCTGATAATATGCATGAT+AGG 0.375932 7.1:+37722209 None:intergenic
ACAATCCTAATCGGTGGTTC+AGG 0.375962 7.1:+37721397 None:intergenic
CTTCCTCAGGAGGCGGCGGT+GGG 0.381326 7.1:+37720591 None:intergenic
AAATCTCAAAGGACAAGTTC+TGG 0.387127 7.1:-37720429 MS.gene89294:CDS
GAAGGAAGTAGAAATGGATA+TGG 0.387273 7.1:-37721518 MS.gene89294:CDS
GCCACACACACTAGAACTAT+TGG 0.387802 7.1:-37722375 MS.gene89294:CDS
TCGATAATGGTTCTAATGTC+TGG 0.393863 7.1:+37722336 None:intergenic
TATGCAGGAAGCCTGTCTTC+TGG 0.393917 7.1:+37721358 None:intergenic
CAGTTATTCACAATCCTAAT+CGG 0.396142 7.1:+37721388 None:intergenic
CGTTCCCTCTTCAACAAGTT+GGG 0.404253 7.1:+37721483 None:intergenic
ACTCCTTGAGGTGGAGGTGG+TGG 0.405349 7.1:+37720617 None:intergenic
TAAATTTCTGGATCAGCATC+AGG 0.405570 7.1:-37720495 MS.gene89294:CDS
AGAGGTTTCCAATGCTGTTA+AGG 0.406420 7.1:-37721107 MS.gene89294:CDS
CTCCCACTGATGGAAATCTT+GGG 0.407306 7.1:-37722434 MS.gene89294:CDS
TGTGCATGCCTGGTCTTGGT+GGG 0.408145 7.1:+37720786 None:intergenic
GGTAGGGAAGGAAGTAGAAA+TGG 0.408708 7.1:-37721524 MS.gene89294:CDS
CGTCCTCTTCCGCCACCAAC+TGG 0.418670 7.1:-37720887 MS.gene89294:CDS
GTGGAGGAATGGGCATTCCT+TGG 0.419123 7.1:+37720711 None:intergenic
TAGAGATTCAACCAAATTTG+TGG 0.421417 7.1:-37721335 MS.gene89294:CDS
TTCTCTGTCAACCCCTTTGG+AGG 0.429998 7.1:+37721817 None:intergenic
GGAGGAGGTGCAGCAGGACC+AGG 0.431521 7.1:+37720932 None:intergenic
GATGTGTGAATAGGCTAGAA+TGG 0.434898 7.1:-37721756 MS.gene89294:CDS
CCTCACCCTCATCCACCATC+AGG 0.435685 7.1:-37720659 MS.gene89294:CDS
AAAGCTTACAGCACAATTTG+TGG 0.438501 7.1:-37721977 MS.gene89294:CDS
TAGGAATTGATGGATGCATT+GGG 0.444523 7.1:+37720741 None:intergenic
ATCACCTCCTCAAGTGTCAT+TGG 0.449631 7.1:+37721589 None:intergenic
AAGACCCTGAACCACCGATT+AGG 0.451674 7.1:-37721402 MS.gene89294:CDS
GCAACCTAAGCAGGTTATAT+GGG 0.454626 7.1:-37721059 MS.gene89294:CDS
AATTTCAGCCTTAACAGCAT+TGG 0.456041 7.1:+37721099 None:intergenic
GATACTCCTTGAGGTGGAGG+TGG 0.456648 7.1:+37720614 None:intergenic
TGCATGCCTGGTCTTGGTGG+GGG 0.457278 7.1:+37720788 None:intergenic
GAAGAAGATGATGCTGAGGT+AGG 0.457553 7.1:-37721541 MS.gene89294:CDS
GGATGAGGGTGAGGAACATA+AGG 0.458423 7.1:+37720668 None:intergenic
GCACAATTTGTGGCTCGTAA+TGG 0.460668 7.1:-37721967 MS.gene89294:CDS
ATGTGCATGCCTGGTCTTGG+TGG 0.461170 7.1:+37720785 None:intergenic
AGTCCAGTTGGTGGCGGAAG+AGG 0.462185 7.1:+37720884 None:intergenic
GGAATCAGTTCACCGGTGAT+AGG 0.466222 7.1:+37721307 None:intergenic
GATCCAGGTGGTGGAGGAAT+GGG 0.466476 7.1:+37720701 None:intergenic
AGATCCAGGTGGTGGAGGAA+TGG 0.470134 7.1:+37720700 None:intergenic
GGTCTTGGAGGAGGTGCAGC+AGG 0.470671 7.1:+37720926 None:intergenic
TCGTTCCCTCTTCAACAAGT+TGG 0.470849 7.1:+37721482 None:intergenic
TGGATTGAGGAAATTAAACT+TGG 0.471770 7.1:+37722239 None:intergenic
TCAATTTCTGCTTGTTAGCA+GGG 0.474049 7.1:+37720336 None:intergenic
GTCATGTGCATGCCTGGTCT+TGG 0.475861 7.1:+37720782 None:intergenic
TCAGTTTCCGGTGCAGCCCT+AGG 0.479497 7.1:+37722141 None:intergenic
TTCTGGTTCCTCTGGAAACA+AGG 0.479917 7.1:+37720562 None:intergenic
AACTGTATACTGCTCAGCCT+CGG 0.479959 7.1:+37722041 None:intergenic
CCATCCCATATAACCTGCTT+AGG 0.482921 7.1:+37721055 None:intergenic
AATGTAAACATGTTGTGAGT+TGG 0.484691 7.1:+37721880 None:intergenic
GGCTTCCTGAAGGCATTACA+AGG 0.485693 7.1:-37722017 MS.gene89294:CDS
GGAGCTTCCTCAGGAGGCGG+CGG 0.486510 7.1:+37720587 None:intergenic
AGGATTATTGCTAATTATGC+GGG 0.488493 7.1:-37722267 MS.gene89294:CDS
TTGGTTGAATCTCTATATGC+AGG 0.488704 7.1:+37721343 None:intergenic
GGGGATACTCCTTGAGGTGG+AGG 0.491423 7.1:+37720611 None:intergenic
AGATGATGCTGAGGTAGGGA+AGG 0.492151 7.1:-37721536 MS.gene89294:CDS
TCAGTGGGAGGAGCGGGTAG+AGG 0.492761 7.1:+37722447 None:intergenic
AACTGAGATCCAGGTGGTGG+AGG 0.493314 7.1:+37720695 None:intergenic
TGCACATGACGCAATCTCTC+CGG 0.493421 7.1:-37720769 MS.gene89294:CDS
TGATCCAGAAATTTATCCTC+AGG 0.493754 7.1:+37720503 None:intergenic
AAATGATGAGCAACCTAAGC+AGG 0.494557 7.1:-37721068 MS.gene89294:CDS
AGTGTTCACAAGAGCACTCT+AGG 0.496209 7.1:-37721732 MS.gene89294:CDS
CCTTGCTGATGCATATTCAA+AGG 0.496930 7.1:-37721848 MS.gene89294:CDS
AATGGATATGGACGAGGAAG+AGG 0.498367 7.1:-37721506 MS.gene89294:CDS
TTTCCATCAGTGGGAGGAGC+GGG 0.498622 7.1:+37722441 None:intergenic
ACTGTATACTGCTCAGCCTC+GGG 0.500711 7.1:+37722042 None:intergenic
ATAGGAATTGATGGATGCAT+TGG 0.501574 7.1:+37720740 None:intergenic
ATGTGTGAATAGGCTAGAAT+GGG 0.505142 7.1:-37721755 MS.gene89294:CDS
CAATCCTAATCGGTGGTTCA+GGG 0.505409 7.1:+37721398 None:intergenic
TGACACTTGAGGAGGTGATA+AGG 0.505752 7.1:-37721585 MS.gene89294:CDS
AATCTTCTACTCATAAACCT+AGG 0.508510 7.1:-37722158 MS.gene89294:CDS
ATATTGTCCTTGAGAAAGCC+TGG 0.508540 7.1:+37720305 None:intergenic
AAGAAGATGATGCTGAGGTA+GGG 0.508977 7.1:-37721540 MS.gene89294:CDS
CTACCCGCTCCTCCCACTGA+TGG 0.510889 7.1:-37722444 MS.gene89294:CDS
AGTACAAAGAACAGAAAGAA+AGG 0.511535 7.1:-37721237 MS.gene89294:CDS
AACAAGGGAGGAGCTTCCTC+AGG 0.512702 7.1:+37720578 None:intergenic
GATTGCGTCATGTGCATGCC+TGG 0.513367 7.1:+37720776 None:intergenic
TTCCTCAGGAGGCGGCGGTG+GGG 0.516253 7.1:+37720592 None:intergenic
TATTCTAATCCTAATAGTAT+TGG 0.516440 7.1:-37720821 MS.gene89294:CDS
ATGGTCTTGAATTCGAAAAG+AGG 0.517310 7.1:-37722287 MS.gene89294:CDS
TGATGGAAATCTTGGGGAGG+AGG 0.519562 7.1:-37722427 MS.gene89294:CDS
CAGAAATTGAGTGGAAAGCC+AGG 0.519574 7.1:-37720323 MS.gene89294:CDS
GGAGGAGCTTCCTCAGGAGG+CGG 0.521643 7.1:+37720584 None:intergenic
TCATAAACCTAGGGCTGCAC+CGG 0.523333 7.1:-37722148 MS.gene89294:CDS
TAAGGAGTGAACTGAGATCC+AGG 0.526111 7.1:+37720686 None:intergenic
ATGCCCATTCCTCCACCACC+TGG 0.528755 7.1:-37720704 MS.gene89294:CDS
TCCTCAAGTGTCATTGGAGG+AGG 0.532277 7.1:+37721595 None:intergenic
GTGCATGCCTGGTCTTGGTG+GGG 0.532518 7.1:+37720787 None:intergenic
TATGCATGATAGGGATCAGA+TGG 0.533403 7.1:+37722219 None:intergenic
ATCATCCCTGATGGTGGATG+AGG 0.533964 7.1:+37720653 None:intergenic
GAAGTCATACCAGGTCTTGG+AGG 0.534350 7.1:+37720914 None:intergenic
ACTGAAGTCATACCAGGTCT+TGG 0.536230 7.1:+37720911 None:intergenic
GGTTTCATGAAATGAAATTG+GGG 0.538125 7.1:+37721901 None:intergenic
GCGAAACAAGATAACGCCTA+TGG 0.538384 7.1:-37721563 MS.gene89294:CDS
GAGGAGGTGCAGCAGGACCA+GGG 0.541548 7.1:+37720933 None:intergenic
TTCTGACGGGATTGACAAGT+AGG 0.543304 7.1:-37721936 MS.gene89294:CDS
TTTGTGGTTTCTCCTATCAC+CGG 0.544417 7.1:-37721319 MS.gene89294:CDS
AGGGAAGAAGAGTGAAGTCA+GGG 0.544952 7.1:-37721431 MS.gene89294:CDS
AGGCTGAGCAGTATACAGTT+AGG 0.547036 7.1:-37722038 MS.gene89294:CDS
GATAGGGATCAGATGGATTG+AGG 0.547989 7.1:+37722226 None:intergenic
ACGAGAAACCACTCTGGCAC+AGG 0.548179 7.1:-37721200 MS.gene89294:CDS
CACCACGCTCTCTCAAGGCT+AGG 0.548324 7.1:+37720240 None:intergenic
TCCCCAAGATTTCCATCAGT+GGG 0.549023 7.1:+37722432 None:intergenic
AGTTTGGAAGACAATGATGA+AGG 0.550080 7.1:-37721451 MS.gene89294:CDS
GGAGCGGGTAGAGGAAGTAT+AGG 0.550091 7.1:+37722456 None:intergenic
CAATCTTTGTCTGAAACTGT+TGG 0.550457 7.1:-37720395 MS.gene89294:CDS
GTGAACTGAGATCCAGGTGG+TGG 0.552277 7.1:+37720692 None:intergenic
ACCTCCTCAAGTGTCATTGG+AGG 0.553642 7.1:+37721592 None:intergenic
GATGGTCACAGCGGTAGTAT+TGG 0.553821 7.1:-37721037 MS.gene89294:CDS
GAATACTGCATGTTATGTAA+AGG 0.556618 7.1:+37720839 None:intergenic
GTCACAAAATATTGGAAGTG+AGG 0.557834 7.1:-37720993 MS.gene89294:CDS
TCAGCATCATCTTCTTCCAT+AGG 0.558125 7.1:+37721547 None:intergenic
TCCAATAGTTCTAGTGTGTG+TGG 0.560378 7.1:+37722374 None:intergenic
GTCATACCAGGTCTTGGAGG+AGG 0.561127 7.1:+37720917 None:intergenic
ACATATATACTGATGCGAGC+AGG 0.561433 7.1:+37720470 None:intergenic
GTGTGTGTGGCAACAGTTGT+CGG 0.561561 7.1:+37722387 None:intergenic
AATGGGAAATCCTTTCTGAC+GGG 0.564614 7.1:-37721949 MS.gene89294:CDS
ACTTGTCAATCCCGTCAGAA+AGG 0.565178 7.1:+37721939 None:intergenic
AGCTCCTCCCTTGTTTCCAG+AGG 0.565510 7.1:-37720570 MS.gene89294:CDS
AGCAGGGAGTTGAATCTCCC+CGG 0.565840 7.1:+37720352 None:intergenic
AGTAGAAATGGATATGGACG+AGG 0.566282 7.1:-37721512 MS.gene89294:CDS
ATCCCCACCGCCGCCTCCTG+AGG 0.567346 7.1:-37720594 MS.gene89294:CDS
TCTACCACCACGCTCTCTCA+AGG 0.569307 7.1:+37720235 None:intergenic
ATCTTCTACTCATAAACCTA+GGG 0.571317 7.1:-37722157 MS.gene89294:CDS
ATGGTTCTAATGTCTGGAGG+GGG 0.574125 7.1:+37722342 None:intergenic
GAGGATTATTGCTAATTATG+CGG 0.574782 7.1:-37722268 MS.gene89294:CDS
ACTATTAGGAATCAGTTCAC+CGG 0.579775 7.1:+37721300 None:intergenic
CTCCCCAAGATTTCCATCAG+TGG 0.579945 7.1:+37722431 None:intergenic
TGCTGATAATATGCATGATA+GGG 0.580063 7.1:+37722210 None:intergenic
TAATGGGAAATCCTTTCTGA+CGG 0.581173 7.1:-37721950 MS.gene89294:CDS
TTCAAATCTAGTCCAGTTGG+TGG 0.581563 7.1:+37720875 None:intergenic
AAATCTAGTCCAGTTGGTGG+CGG 0.581569 7.1:+37720878 None:intergenic
AGATTCAAATCTAGTCCAGT+TGG 0.583364 7.1:+37720872 None:intergenic
TGCTTGAAAGATGTGTGAAT+AGG 0.583530 7.1:-37721765 MS.gene89294:CDS
AGAGGCCCAACTTGTTGAAG+AGG 0.583627 7.1:-37721488 MS.gene89294:CDS
TTTGATGAAGGAAATCTCAA+AGG 0.585080 7.1:-37720440 MS.gene89294:CDS
GTTTGGAAGACAATGATGAA+GGG 0.585538 7.1:-37721450 MS.gene89294:CDS
CCTGATGGTGGATGAGGGTG+AGG 0.585720 7.1:+37720659 None:intergenic
TAGTATCGATGTAGCAACTA+CGG 0.586896 7.1:-37722118 MS.gene89294:CDS
TCCCACTGATGGAAATCTTG+GGG 0.587594 7.1:-37722433 MS.gene89294:CDS
GGACGAACTGAAGTCATACC+AGG 0.589321 7.1:+37720905 None:intergenic
GGATTGAGGAAATTAAACTT+GGG 0.589490 7.1:+37722240 None:intergenic
GCTGCACCTCCTCCAAGACC+TGG 0.589894 7.1:-37720923 MS.gene89294:CDS
CCTAAGCAGGTTATATGGGA+TGG 0.590606 7.1:-37721055 MS.gene89294:CDS
AGCATTGGAAACCTCTTCCT+CGG 0.590624 7.1:+37721114 None:intergenic
ACCACGCTCTCTCAAGGCTA+GGG 0.592917 7.1:+37720241 None:intergenic
TCCCTAGCCTTGAGAGAGCG+TGG 0.597079 7.1:-37720242 MS.gene89294:CDS
ACTGGAAGAGACCAGAAGAC+AGG 0.604101 7.1:-37721369 MS.gene89294:CDS
TGAAACTGTTGGCAGCCTGA+AGG 0.606065 7.1:-37720384 MS.gene89294:CDS
CTCACCCTCATCCACCATCA+GGG 0.607170 7.1:-37720658 MS.gene89294:CDS
AAGGGAGGAGCTTCCTCAGG+AGG 0.607480 7.1:+37720581 None:intergenic
TCTGACGGGATTGACAAGTA+GGG 0.611403 7.1:-37721935 MS.gene89294:CDS
TGGAAAGCCAGGCTTTCTCA+AGG 0.611679 7.1:-37720312 MS.gene89294:CDS
GGCGGTGGGGATACTCCTTG+AGG 0.612815 7.1:+37720605 None:intergenic
TAATGGTTCTAATGTCTGGA+GGG 0.613198 7.1:+37722340 None:intergenic
ATAAGCATCATCCCTGATGG+TGG 0.613914 7.1:+37720647 None:intergenic
TCTTGGGGAGGAGGTGATCG+AGG 0.614190 7.1:-37722418 MS.gene89294:CDS
ATTTCCATCAGTGGGAGGAG+CGG 0.614809 7.1:+37722440 None:intergenic
ATCATAAGCATCATCCCTGA+TGG 0.614902 7.1:+37720644 None:intergenic
GAGGCCCAACTTGTTGAAGA+GGG 0.616284 7.1:-37721487 MS.gene89294:CDS
CACTGATGGAAATCTTGGGG+AGG 0.616691 7.1:-37722430 MS.gene89294:CDS
GGAATTGATGGATGCATTGG+GGG 0.617363 7.1:+37720743 None:intergenic
CATCCACCACCTCCACCTCA+AGG 0.617512 7.1:-37720620 MS.gene89294:CDS
GCTAACAAGCAGAAATTGAG+TGG 0.618988 7.1:-37720332 MS.gene89294:CDS
TTCATCATCCTGTGCCAGAG+TGG 0.619478 7.1:+37721192 None:intergenic
TCTGGTTCCTCTGGAAACAA+GGG 0.620399 7.1:+37720563 None:intergenic
AGAAGCCTGATATTTCTGCC+CGG 0.622543 7.1:-37722095 MS.gene89294:CDS
GTTTCATGAAATGAAATTGG+GGG 0.624393 7.1:+37721902 None:intergenic
AATGGTTCTAATGTCTGGAG+GGG 0.624614 7.1:+37722341 None:intergenic
TCAATTCCTATGAATAACCA+AGG 0.629776 7.1:-37720728 MS.gene89294:CDS
TTTCTTTACTGGTTTAAACC+GGG 0.630709 7.1:+37722077 None:intergenic
ATTCACACATCTTTCAAGCA+CGG 0.630916 7.1:+37721768 None:intergenic
AGGAATTGATGGATGCATTG+GGG 0.631433 7.1:+37720742 None:intergenic
TCCTGAAGGCATTACAAGGG+AGG 0.633482 7.1:-37722013 MS.gene89294:CDS
GATCCAGAAATTTATCCTCA+GGG 0.634230 7.1:+37720504 None:intergenic
CCTTTGAATATGCATCAGCA+AGG 0.634998 7.1:+37721848 None:intergenic
CTTTGAATATGCATCAGCAA+GGG 0.636298 7.1:+37721849 None:intergenic
ATAATGGTTCTAATGTCTGG+AGG 0.636775 7.1:+37722339 None:intergenic
ACCTCCTCCAATGACACTTG+AGG 0.642711 7.1:-37721596 MS.gene89294:CDS
CAGAGGAACCAGAACCAAAG+AGG 0.642866 7.1:-37720553 MS.gene89294:CDS
GTATACTGCTCAGCCTCGGG+AGG 0.644159 7.1:+37722045 None:intergenic
TTATTCACAATCCTAATCGG+TGG 0.645627 7.1:+37721391 None:intergenic
CTTGCACATTACAATGTCAG+TGG 0.646215 7.1:-37720278 MS.gene89294:CDS
AATAGACTTTGCTGATGATG+AGG 0.647412 7.1:-37721629 MS.gene89294:CDS
GGTTCCTCTGGAAACAAGGG+AGG 0.650047 7.1:+37720566 None:intergenic
TCCTCCAATGACACTTGAGG+AGG 0.650135 7.1:-37721593 MS.gene89294:CDS
GGTGGGGATACTCCTTGAGG+TGG 0.652903 7.1:+37720608 None:intergenic
TGGTTCTAATGTCTGGAGGG+GGG 0.655443 7.1:+37722343 None:intergenic
AAATTTCTGGATCAGCATCA+GGG 0.656993 7.1:-37720494 MS.gene89294:CDS
GCTTCCTGAAGGCATTACAA+GGG 0.666795 7.1:-37722016 MS.gene89294:CDS
TCATCCCTGATGGTGGATGA+GGG 0.667117 7.1:+37720654 None:intergenic
CGATTCTGCTCTGATCCCTG+AGG 0.667531 7.1:-37720519 MS.gene89294:CDS
CAAAATACGAGAAACCACTC+TGG 0.669456 7.1:-37721206 MS.gene89294:CDS
CCAAGATTTCCATCAGTGGG+AGG 0.670695 7.1:+37722435 None:intergenic
GCACATTACAATGTCAGTGG+AGG 0.674142 7.1:-37720275 MS.gene89294:CDS
TATACAGTTAGGCTTCCTGA+AGG 0.674309 7.1:-37722027 MS.gene89294:CDS
TATGGAAGAAGATGATGCTG+AGG 0.681247 7.1:-37721545 MS.gene89294:CDS
GAAAGTACTTGATCCTCCCG+AGG 0.684311 7.1:-37722058 MS.gene89294:CDS
GAGGTGCAGCAGGACCAGGG+AGG 0.710329 7.1:+37720936 None:intergenic
CTAGCCTTGAGAGAGCGTGG+TGG 0.725849 7.1:-37720239 MS.gene89294:CDS
CTAGATTTGAATCTACCTCG+TGG 0.737913 7.1:-37720863 MS.gene89294:CDS
GTTATATGGGATGGTCACAG+CGG 0.750758 7.1:-37721046 MS.gene89294:CDS
ATGTTATGTAAAGGACCACG+AGG 0.782735 7.1:+37720848 None:intergenic
GGAGTGAACTGAGATCCAGG+TGG 0.832532 7.1:+37720689 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTCTAATCCTAATAGTAT+TGG - chr7.1:37721864-37721883 MS.gene89294:CDS 20.0%
! AGATTTCCTTCATCAAAATT+AGG + chr7.1:37722242-37722261 None:intergenic 25.0%
! TACAAATTGCTATGATTGAT+TGG - chr7.1:37721010-37721029 MS.gene89294:CDS 25.0%
! TGAAATCTCAAAAAACATTG+TGG - chr7.1:37721512-37721531 MS.gene89294:CDS 25.0%
! TGGTTTCATGAAATGAAATT+GGG + chr7.1:37720788-37720807 None:intergenic 25.0%
! TTGGTTTCATGAAATGAAAT+TGG + chr7.1:37720789-37720808 None:intergenic 25.0%
!!! TATGTTCCTAATTTTGATGA+AGG - chr7.1:37722233-37722252 MS.gene89294:CDS 25.0%
AATCTTCTACTCATAAACCT+AGG - chr7.1:37720527-37720546 MS.gene89294:CDS 30.0%
AATGTAAACATGTTGTGAGT+TGG + chr7.1:37720808-37720827 None:intergenic 30.0%
AGGATTATTGCTAATTATGC+GGG - chr7.1:37720418-37720437 MS.gene89294:CDS 30.0%
AGTACAAAGAACAGAAAGAA+AGG - chr7.1:37721448-37721467 MS.gene89294:CDS 30.0%
ATCTTCTACTCATAAACCTA+GGG - chr7.1:37720528-37720547 MS.gene89294:CDS 30.0%
CAAGCAATGTCACAAAATAT+TGG - chr7.1:37721684-37721703 MS.gene89294:CDS 30.0%
CAGTTATTCACAATCCTAAT+CGG + chr7.1:37721300-37721319 None:intergenic 30.0%
GAATACTGCATGTTATGTAA+AGG + chr7.1:37721849-37721868 None:intergenic 30.0%
GAGGATTATTGCTAATTATG+CGG - chr7.1:37720417-37720436 MS.gene89294:CDS 30.0%
GGATTGAGGAAATTAAACTT+GGG + chr7.1:37720448-37720467 None:intergenic 30.0%
GGTTTCATGAAATGAAATTG+GGG + chr7.1:37720787-37720806 None:intergenic 30.0%
GTTTCATGAAATGAAATTGG+GGG + chr7.1:37720786-37720805 None:intergenic 30.0%
TAGAGATTCAACCAAATTTG+TGG - chr7.1:37721350-37721369 MS.gene89294:CDS 30.0%
TCAATTCCTATGAATAACCA+AGG - chr7.1:37721957-37721976 MS.gene89294:CDS 30.0%
TCTTTCTGTTCTTTGTACTT+AGG + chr7.1:37721447-37721466 None:intergenic 30.0%
TGCTGATAATATGCATGATA+GGG + chr7.1:37720478-37720497 None:intergenic 30.0%
TGGATTGAGGAAATTAAACT+TGG + chr7.1:37720449-37720468 None:intergenic 30.0%
TGGTTATTCATAGGAATTGA+TGG + chr7.1:37721957-37721976 None:intergenic 30.0%
TGTTCTGACATTTCACTATT+AGG + chr7.1:37721402-37721421 None:intergenic 30.0%
TTTGATGAAGGAAATCTCAA+AGG - chr7.1:37722245-37722264 MS.gene89294:CDS 30.0%
! CAATATTTTGTGACATTGCT+TGG + chr7.1:37721686-37721705 None:intergenic 30.0%
!! CTTTCTTTACTGGTTTAAAC+CGG + chr7.1:37720612-37720631 None:intergenic 30.0%
!! TTTCTTTACTGGTTTAAACC+GGG + chr7.1:37720611-37720630 None:intergenic 30.0%
AAAGCTTACAGCACAATTTG+TGG - chr7.1:37720708-37720727 MS.gene89294:CDS 35.0%
AAATCTCAAAGGACAAGTTC+TGG - chr7.1:37722256-37722275 MS.gene89294:CDS 35.0%
AATGAATCTAAAAACCTCCC+TGG - chr7.1:37721735-37721754 MS.gene89294:CDS 35.0%
AATTTCAGCCTTAACAGCAT+TGG + chr7.1:37721589-37721608 None:intergenic 35.0%
ACATCGATACTATCAGTTTC+CGG + chr7.1:37720559-37720578 None:intergenic 35.0%
ACTATTAGGAATCAGTTCAC+CGG + chr7.1:37721388-37721407 None:intergenic 35.0%
AGATTCAAATCTAGTCCAGT+TGG + chr7.1:37721816-37721835 None:intergenic 35.0%
AGTTTGGAAGACAATGATGA+AGG - chr7.1:37721234-37721253 MS.gene89294:CDS 35.0%
ATGTGTGAATAGGCTAGAAT+GGG - chr7.1:37720930-37720949 MS.gene89294:CDS 35.0%
ATTCACACATCTTTCAAGCA+CGG + chr7.1:37720920-37720939 None:intergenic 35.0%
ATTGGAAGGCCAATACTATT+AGG + chr7.1:37721876-37721895 None:intergenic 35.0%
CGATTAGGATTGTGAATAAC+TGG - chr7.1:37721298-37721317 MS.gene89294:CDS 35.0%
CTTTGAATATGCATCAGCAA+GGG + chr7.1:37720839-37720858 None:intergenic 35.0%
GAAGGAAGTAGAAATGGATA+TGG - chr7.1:37721167-37721186 MS.gene89294:CDS 35.0%
GATAGGAGAAACCACAAATT+TGG + chr7.1:37721364-37721383 None:intergenic 35.0%
GATCCAGAAATTTATCCTCA+GGG + chr7.1:37722184-37722203 None:intergenic 35.0%
GGATCAAGTACTTTCTTTAC+TGG + chr7.1:37720622-37720641 None:intergenic 35.0%
GTCACAAAATATTGGAAGTG+AGG - chr7.1:37721692-37721711 MS.gene89294:CDS 35.0%
GTTTGGAAGACAATGATGAA+GGG - chr7.1:37721235-37721254 MS.gene89294:CDS 35.0%
TAATGGGAAATCCTTTCTGA+CGG - chr7.1:37720735-37720754 MS.gene89294:CDS 35.0%
TCGGTAGTACCAAAAATATC+AGG + chr7.1:37721555-37721574 None:intergenic 35.0%
TCTCAGTTCGTTGCTAAAAA+TGG - chr7.1:37720379-37720398 MS.gene89294:CDS 35.0%
TGATCCAGAAATTTATCCTC+AGG + chr7.1:37722185-37722204 None:intergenic 35.0%
TGCTTGAAAGATGTGTGAAT+AGG - chr7.1:37720920-37720939 MS.gene89294:CDS 35.0%
TTATTCACAATCCTAATCGG+TGG + chr7.1:37721297-37721316 None:intergenic 35.0%
TTGGTTGAATCTCTATATGC+AGG + chr7.1:37721345-37721364 None:intergenic 35.0%
! AAATTTCTGGATCAGCATCA+GGG - chr7.1:37722191-37722210 MS.gene89294:CDS 35.0%
! AATAGACTTTGCTGATGATG+AGG - chr7.1:37721056-37721075 MS.gene89294:CDS 35.0%
! ATAGGAATTGATGGATGCAT+TGG + chr7.1:37721948-37721967 None:intergenic 35.0%
! ATGGTCTTGAATTCGAAAAG+AGG - chr7.1:37720398-37720417 MS.gene89294:CDS 35.0%
! CAATCTTTGTCTGAAACTGT+TGG - chr7.1:37722290-37722309 MS.gene89294:CDS 35.0%
! GATTGATTGGCATGATTTTG+TGG - chr7.1:37721023-37721042 MS.gene89294:CDS 35.0%
! GTGCTGATAATATGCATGAT+AGG + chr7.1:37720479-37720498 None:intergenic 35.0%
! TAAATTTCTGGATCAGCATC+AGG - chr7.1:37722190-37722209 MS.gene89294:CDS 35.0%
! TAGGAATTGATGGATGCATT+GGG + chr7.1:37721947-37721966 None:intergenic 35.0%
! TCAATTTCTGCTTGTTAGCA+GGG + chr7.1:37722352-37722371 None:intergenic 35.0%
!! ATAATGGTTCTAATGTCTGG+AGG + chr7.1:37720349-37720368 None:intergenic 35.0%
!! TAATGGTTCTAATGTCTGGA+GGG + chr7.1:37720348-37720367 None:intergenic 35.0%
!! TAGTATCGATGTAGCAACTA+CGG - chr7.1:37720567-37720586 MS.gene89294:CDS 35.0%
!! TCGATAATGGTTCTAATGTC+TGG + chr7.1:37720352-37720371 None:intergenic 35.0%
!!! TGATATTTTTGGTACTACCG+AGG - chr7.1:37721554-37721573 MS.gene89294:CDS 35.0%
AAATGATGAGCAACCTAAGC+AGG - chr7.1:37721617-37721636 MS.gene89294:CDS 40.0%
AAGAAGATGATGCTGAGGTA+GGG - chr7.1:37721145-37721164 MS.gene89294:CDS 40.0%
AATGGGAAATCCTTTCTGAC+GGG - chr7.1:37720736-37720755 MS.gene89294:CDS 40.0%
ACATATATACTGATGCGAGC+AGG + chr7.1:37722218-37722237 None:intergenic 40.0%
AGAGGTTTCCAATGCTGTTA+AGG - chr7.1:37721578-37721597 MS.gene89294:CDS 40.0%
AGCAACCTAAGCAGGTTATA+TGG - chr7.1:37721625-37721644 MS.gene89294:CDS 40.0%
AGCCTGAAGGAAAAAATTGC+CGG - chr7.1:37722314-37722333 MS.gene89294:CDS 40.0%
AGTAGAAATGGATATGGACG+AGG - chr7.1:37721173-37721192 MS.gene89294:CDS 40.0%
ATATTGTCCTTGAGAAAGCC+TGG + chr7.1:37722383-37722402 None:intergenic 40.0%
ATCATAAGCATCATCCCTGA+TGG + chr7.1:37722044-37722063 None:intergenic 40.0%
ATGTTATGTAAAGGACCACG+AGG + chr7.1:37721840-37721859 None:intergenic 40.0%
CAAAATACGAGAAACCACTC+TGG - chr7.1:37721479-37721498 MS.gene89294:CDS 40.0%
CACAATTTGTGGCTCGTAAT+GGG - chr7.1:37720719-37720738 MS.gene89294:CDS 40.0%
CCTTGCTGATGCATATTCAA+AGG - chr7.1:37720837-37720856 MS.gene89294:CDS 40.0%
CCTTTGAATATGCATCAGCA+AGG + chr7.1:37720840-37720859 None:intergenic 40.0%
CTAGATTTGAATCTACCTCG+TGG - chr7.1:37721822-37721841 MS.gene89294:CDS 40.0%
CTGAGACGCTTTATCGATAA+TGG + chr7.1:37720365-37720384 None:intergenic 40.0%
CTTGCACATTACAATGTCAG+TGG - chr7.1:37722407-37722426 MS.gene89294:CDS 40.0%
GATCCCTGAGGATAAATTTC+TGG - chr7.1:37722178-37722197 MS.gene89294:CDS 40.0%
GATGTGTGAATAGGCTAGAA+TGG - chr7.1:37720929-37720948 MS.gene89294:CDS 40.0%
GCAACCTAAGCAGGTTATAT+GGG - chr7.1:37721626-37721645 MS.gene89294:CDS 40.0%
GCTAACAAGCAGAAATTGAG+TGG - chr7.1:37722353-37722372 MS.gene89294:CDS 40.0%
GGCATTCCTTGGTTATTCAT+AGG + chr7.1:37721966-37721985 None:intergenic 40.0%
TATACAGTTAGGCTTCCTGA+AGG - chr7.1:37720658-37720677 MS.gene89294:CDS 40.0%
TATGCATGATAGGGATCAGA+TGG + chr7.1:37720469-37720488 None:intergenic 40.0%
TATGGAAGAAGATGATGCTG+AGG - chr7.1:37721140-37721159 MS.gene89294:CDS 40.0%
TCAGCATCATCTTCTTCCAT+AGG + chr7.1:37721141-37721160 None:intergenic 40.0%
TCGTCATACTTCATCCTCTT+TGG + chr7.1:37722149-37722168 None:intergenic 40.0%
TTAAACCGGGCAGAAATATC+AGG + chr7.1:37720598-37720617 None:intergenic 40.0%
TTCAAATCTAGTCCAGTTGG+TGG + chr7.1:37721813-37721832 None:intergenic 40.0%
TTTGTGGTTTCTCCTATCAC+CGG - chr7.1:37721366-37721385 MS.gene89294:CDS 40.0%
! AGGAATTGATGGATGCATTG+GGG + chr7.1:37721946-37721965 None:intergenic 40.0%
! CAGAGTGGTTTCTCGTATTT+TGG + chr7.1:37721481-37721500 None:intergenic 40.0%
! CGTACTCGTCCTGATATTTT+TGG - chr7.1:37721543-37721562 MS.gene89294:CDS 40.0%
! CTCAATTTCTGCTTGTTAGC+AGG + chr7.1:37722353-37722372 None:intergenic 40.0%
! TACTTCATCCTCTTTGGTTC+TGG + chr7.1:37722143-37722162 None:intergenic 40.0%
! TGATTGGCATGATTTTGTGG+TGG - chr7.1:37721026-37721045 MS.gene89294:CDS 40.0%
!! AAAGGTTTTGATGCCTCCAA+AGG - chr7.1:37720855-37720874 MS.gene89294:CDS 40.0%
!! AAGGTTTTGATGCCTCCAAA+GGG - chr7.1:37720856-37720875 MS.gene89294:CDS 40.0%
!! AATGGTTCTAATGTCTGGAG+GGG + chr7.1:37720347-37720366 None:intergenic 40.0%
!! ACAAGAGCACTCTAGGAAAA+AGG - chr7.1:37720960-37720979 MS.gene89294:CDS 40.0%
!! TCCAATAGTTCTAGTGTGTG+TGG + chr7.1:37720314-37720333 None:intergenic 40.0%
AACTGTATACTGCTCAGCCT+CGG + chr7.1:37720647-37720666 None:intergenic 45.0%
AAGGGAAGAAGAGTGAAGTC+AGG - chr7.1:37721253-37721272 MS.gene89294:CDS 45.0%
AATGGATATGGACGAGGAAG+AGG - chr7.1:37721179-37721198 MS.gene89294:CDS 45.0%
ACAATCCTAATCGGTGGTTC+AGG + chr7.1:37721291-37721310 None:intergenic 45.0%
ACTGAAGTCATACCAGGTCT+TGG + chr7.1:37721777-37721796 None:intergenic 45.0%
ACTTGTCAATCCCGTCAGAA+AGG + chr7.1:37720749-37720768 None:intergenic 45.0%
AGGCTGAGCAGTATACAGTT+AGG - chr7.1:37720647-37720666 MS.gene89294:CDS 45.0%
AGGGAAGAAGAGTGAAGTCA+GGG - chr7.1:37721254-37721273 MS.gene89294:CDS 45.0%
ATAAGCATCATCCCTGATGG+TGG + chr7.1:37722041-37722060 None:intergenic 45.0%
ATCACCTCCTCAAGTGTCAT+TGG + chr7.1:37721099-37721118 None:intergenic 45.0%
CAATCCTAATCGGTGGTTCA+GGG + chr7.1:37721290-37721309 None:intergenic 45.0%
CAGAAATTGAGTGGAAAGCC+AGG - chr7.1:37722362-37722381 MS.gene89294:CDS 45.0%
CCATCCCATATAACCTGCTT+AGG + chr7.1:37721633-37721652 None:intergenic 45.0%
CCTAAGCAGGTTATATGGGA+TGG - chr7.1:37721630-37721649 MS.gene89294:CDS 45.0%
CCTGAAGGAAAAAATTGCCG+GGG - chr7.1:37722316-37722335 MS.gene89294:CDS 45.0%
CGTTCCCTCTTCAACAAGTT+GGG + chr7.1:37721205-37721224 None:intergenic 45.0%
CTCCCACTGATGGAAATCTT+GGG - chr7.1:37720251-37720270 MS.gene89294:CDS 45.0%
GAAGAAGATGATGCTGAGGT+AGG - chr7.1:37721144-37721163 MS.gene89294:CDS 45.0%
GCACAATTTGTGGCTCGTAA+TGG - chr7.1:37720718-37720737 MS.gene89294:CDS 45.0%
GCACATTACAATGTCAGTGG+AGG - chr7.1:37722410-37722429 MS.gene89294:CDS 45.0%
GCCACACACACTAGAACTAT+TGG - chr7.1:37720310-37720329 MS.gene89294:CDS 45.0%
GCCTGAAGGAAAAAATTGCC+GGG - chr7.1:37722315-37722334 MS.gene89294:CDS 45.0%
GCGAAACAAGATAACGCCTA+TGG - chr7.1:37721122-37721141 MS.gene89294:CDS 45.0%
GGTAGGGAAGGAAGTAGAAA+TGG - chr7.1:37721161-37721180 MS.gene89294:CDS 45.0%
GTTATATGGGATGGTCACAG+CGG - chr7.1:37721639-37721658 MS.gene89294:CDS 45.0%
TAAGGAGTGAACTGAGATCC+AGG + chr7.1:37722002-37722021 None:intergenic 45.0%
TCCCACTGATGGAAATCTTG+GGG - chr7.1:37720252-37720271 MS.gene89294:CDS 45.0%
TCCCCAAGATTTCCATCAGT+GGG + chr7.1:37720256-37720275 None:intergenic 45.0%
TCGTTCCCTCTTCAACAAGT+TGG + chr7.1:37721206-37721225 None:intergenic 45.0%
TCTGACGGGATTGACAAGTA+GGG - chr7.1:37720750-37720769 MS.gene89294:CDS 45.0%
TGACACTTGAGGAGGTGATA+AGG - chr7.1:37721100-37721119 MS.gene89294:CDS 45.0%
TTCTGACGGGATTGACAAGT+AGG - chr7.1:37720749-37720768 MS.gene89294:CDS 45.0%
! AGAAGCCTGATATTTCTGCC+CGG - chr7.1:37720590-37720609 MS.gene89294:CDS 45.0%
! AGCATTGGAAACCTCTTCCT+CGG + chr7.1:37721574-37721593 None:intergenic 45.0%
! GGAATTGATGGATGCATTGG+GGG + chr7.1:37721945-37721964 None:intergenic 45.0%
! TCTGGTTCCTCTGGAAACAA+GGG + chr7.1:37722125-37722144 None:intergenic 45.0%
! TTTTGGTACTACCGAGGAAG+AGG - chr7.1:37721560-37721579 MS.gene89294:CDS 45.0%
!! AAATCTAGTCCAGTTGGTGG+CGG + chr7.1:37721810-37721829 None:intergenic 45.0%
!! AGGTTTTGATGCCTCCAAAG+GGG - chr7.1:37720857-37720876 MS.gene89294:CDS 45.0%
!! AGTGTTCACAAGAGCACTCT+AGG - chr7.1:37720953-37720972 MS.gene89294:CDS 45.0%
!! ATGGTTCTAATGTCTGGAGG+GGG + chr7.1:37720346-37720365 None:intergenic 45.0%
!! GATAGGGATCAGATGGATTG+AGG + chr7.1:37720462-37720481 None:intergenic 45.0%
!! GCTTCCTGAAGGCATTACAA+GGG - chr7.1:37720669-37720688 MS.gene89294:CDS 45.0%
!! TTCTGGTTCCTCTGGAAACA+AGG + chr7.1:37722126-37722145 None:intergenic 45.0%
ACCTCCTCCAATGACACTTG+AGG - chr7.1:37721089-37721108 MS.gene89294:CDS 50.0%
ACTGGAAGAGACCAGAAGAC+AGG - chr7.1:37721316-37721335 MS.gene89294:CDS 50.0%
ACTGTATACTGCTCAGCCTC+GGG + chr7.1:37720646-37720665 None:intergenic 50.0%
AGATGATGCTGAGGTAGGGA+AGG - chr7.1:37721149-37721168 MS.gene89294:CDS 50.0%
AGCTTCTCTGTCAACCCCTT+TGG + chr7.1:37720874-37720893 None:intergenic 50.0%
ATTTCCATCAGTGGGAGGAG+CGG + chr7.1:37720248-37720267 None:intergenic 50.0%
CACTGATGGAAATCTTGGGG+AGG - chr7.1:37720255-37720274 MS.gene89294:CDS 50.0%
CAGAGGAACCAGAACCAAAG+AGG - chr7.1:37722132-37722151 MS.gene89294:CDS 50.0%
CCAAGATTTCCATCAGTGGG+AGG + chr7.1:37720253-37720272 None:intergenic 50.0%
CCTCCCACTGATGGAAATCT+TGG - chr7.1:37720250-37720269 MS.gene89294:CDS 50.0%
CTCCCCAAGATTTCCATCAG+TGG + chr7.1:37720257-37720276 None:intergenic 50.0%
GAAGTCATACCAGGTCTTGG+AGG + chr7.1:37721774-37721793 None:intergenic 50.0%
GATGGTCACAGCGGTAGTAT+TGG - chr7.1:37721648-37721667 MS.gene89294:CDS 50.0%
GGAATCAGTTCACCGGTGAT+AGG + chr7.1:37721381-37721400 None:intergenic 50.0%
GGACGAACTGAAGTCATACC+AGG + chr7.1:37721783-37721802 None:intergenic 50.0%
GGATGAGGGTGAGGAACATA+AGG + chr7.1:37722020-37722039 None:intergenic 50.0%
GTGTGTGTGGCAACAGTTGT+CGG + chr7.1:37720301-37720320 None:intergenic 50.0%
TATGCAGGAAGCCTGTCTTC+TGG + chr7.1:37721330-37721349 None:intergenic 50.0%
TCATAAACCTAGGGCTGCAC+CGG - chr7.1:37720537-37720556 MS.gene89294:CDS 50.0%
TCCTCCAATGACACTTGAGG+AGG - chr7.1:37721092-37721111 MS.gene89294:CDS 50.0%
TCCTCCCTTGTAATGCCTTC+AGG + chr7.1:37720676-37720695 None:intergenic 50.0%
TGAAACTGTTGGCAGCCTGA+AGG - chr7.1:37722301-37722320 MS.gene89294:CDS 50.0%
TGATGGAAATCTTGGGGAGG+AGG - chr7.1:37720258-37720277 MS.gene89294:CDS 50.0%
TGCACATGACGCAATCTCTC+CGG - chr7.1:37721916-37721935 MS.gene89294:CDS 50.0%
TGGAAAGCCAGGCTTTCTCA+AGG - chr7.1:37722373-37722392 MS.gene89294:CDS 50.0%
TTCATCATCCTGTGCCAGAG+TGG + chr7.1:37721496-37721515 None:intergenic 50.0%
TTCTCTGTCAACCCCTTTGG+AGG + chr7.1:37720871-37720890 None:intergenic 50.0%
! AAGACCCTGAACCACCGATT+AGG - chr7.1:37721283-37721302 MS.gene89294:CDS 50.0%
! ACCTCCTCAAGTGTCATTGG+AGG + chr7.1:37721096-37721115 None:intergenic 50.0%
! ATTGATGGATGCATTGGGGG+TGG + chr7.1:37721942-37721961 None:intergenic 50.0%
! TCCTCAAGTGTCATTGGAGG+AGG + chr7.1:37721093-37721112 None:intergenic 50.0%
!! AGAGGCCCAACTTGTTGAAG+AGG - chr7.1:37721197-37721216 MS.gene89294:CDS 50.0%
!! ATCATCCCTGATGGTGGATG+AGG + chr7.1:37722035-37722054 None:intergenic 50.0%
!! CTCTTTGGTTCTGGTTCCTC+TGG + chr7.1:37722134-37722153 None:intergenic 50.0%
!! GAAAGTACTTGATCCTCCCG+AGG - chr7.1:37720627-37720646 MS.gene89294:CDS 50.0%
!! GAGGCCCAACTTGTTGAAGA+GGG - chr7.1:37721198-37721217 MS.gene89294:CDS 50.0%
!! GGCTTCCTGAAGGCATTACA+AGG - chr7.1:37720668-37720687 MS.gene89294:CDS 50.0%
!! TCATCCCTGATGGTGGATGA+GGG + chr7.1:37722034-37722053 None:intergenic 50.0%
!! TCCTGAAGGCATTACAAGGG+AGG - chr7.1:37720672-37720691 MS.gene89294:CDS 50.0%
!! TGGTTCTAATGTCTGGAGGG+GGG + chr7.1:37720345-37720364 None:intergenic 50.0%
!!! CCCCGGCAATTTTTTCCTTC+AGG + chr7.1:37722319-37722338 None:intergenic 50.0%
AACAAGGGAGGAGCTTCCTC+AGG + chr7.1:37722110-37722129 None:intergenic 55.0%
ACCACGCTCTCTCAAGGCTA+GGG + chr7.1:37722447-37722466 None:intergenic 55.0%
ACGAGAAACCACTCTGGCAC+AGG - chr7.1:37721485-37721504 MS.gene89294:CDS 55.0%
AGCAGGGAGTTGAATCTCCC+CGG + chr7.1:37722336-37722355 None:intergenic 55.0%
CGATTCTGCTCTGATCCCTG+AGG - chr7.1:37722166-37722185 MS.gene89294:CDS 55.0%
CTCACCCTCATCCACCATCA+GGG - chr7.1:37722027-37722046 MS.gene89294:CDS 55.0%
GATACTCCTTGAGGTGGAGG+TGG + chr7.1:37722074-37722093 None:intergenic 55.0%
GATTGCGTCATGTGCATGCC+TGG + chr7.1:37721912-37721931 None:intergenic 55.0%
GGAGTGAACTGAGATCCAGG+TGG + chr7.1:37721999-37722018 None:intergenic 55.0%
GGGAACGAGAGCTGCTAGTT+TGG - chr7.1:37721218-37721237 MS.gene89294:CDS 55.0%
GTCATACCAGGTCTTGGAGG+AGG + chr7.1:37721771-37721790 None:intergenic 55.0%
GTCATGTGCATGCCTGGTCT+TGG + chr7.1:37721906-37721925 None:intergenic 55.0%
GTCTTGGTGGGGGAATTGGA+AGG + chr7.1:37721890-37721909 None:intergenic 55.0%
GTGAACTGAGATCCAGGTGG+TGG + chr7.1:37721996-37722015 None:intergenic 55.0%
GTGGAGGAATGGGCATTCCT+TGG + chr7.1:37721977-37721996 None:intergenic 55.0%
TCTACCACCACGCTCTCTCA+AGG + chr7.1:37722453-37722472 None:intergenic 55.0%
TTTCCATCAGTGGGAGGAGC+GGG + chr7.1:37720247-37720266 None:intergenic 55.0%
! AACTGAGATCCAGGTGGTGG+AGG + chr7.1:37721993-37722012 None:intergenic 55.0%
! AGCTCCTCCCTTGTTTCCAG+AGG - chr7.1:37722115-37722134 MS.gene89294:CDS 55.0%
! GGAGCGGGTAGAGGAAGTAT+AGG + chr7.1:37720232-37720251 None:intergenic 55.0%
! GGTTCCTCTGGAAACAAGGG+AGG + chr7.1:37722122-37722141 None:intergenic 55.0%
!! AGATCCAGGTGGTGGAGGAA+TGG + chr7.1:37721988-37722007 None:intergenic 55.0%
!! ATGTGCATGCCTGGTCTTGG+TGG + chr7.1:37721903-37721922 None:intergenic 55.0%
!! GATCCAGGTGGTGGAGGAAT+GGG + chr7.1:37721987-37722006 None:intergenic 55.0%
!! TGTGCATGCCTGGTCTTGGT+GGG + chr7.1:37721902-37721921 None:intergenic 55.0%
AAGGGAGGAGCTTCCTCAGG+AGG + chr7.1:37722107-37722126 None:intergenic 60.0%
ACTCCTTGAGGTGGAGGTGG+TGG + chr7.1:37722071-37722090 None:intergenic 60.0%
ATGCCCATTCCTCCACCACC+TGG - chr7.1:37721981-37722000 MS.gene89294:CDS 60.0%
ATGGATGCATTGGGGGTGGC+CGG + chr7.1:37721938-37721957 None:intergenic 60.0%
CACCACGCTCTCTCAAGGCT+AGG + chr7.1:37722448-37722467 None:intergenic 60.0%
CATCCACCACCTCCACCTCA+AGG - chr7.1:37722065-37722084 MS.gene89294:CDS 60.0%
CCAATTCCCCCACCAAGACC+AGG - chr7.1:37721891-37721910 MS.gene89294:CDS 60.0%
CCTCACCCTCATCCACCATC+AGG - chr7.1:37722026-37722045 MS.gene89294:CDS 60.0%
GGGGATACTCCTTGAGGTGG+AGG + chr7.1:37722077-37722096 None:intergenic 60.0%
GGTGGGGATACTCCTTGAGG+TGG + chr7.1:37722080-37722099 None:intergenic 60.0%
GTATACTGCTCAGCCTCGGG+AGG + chr7.1:37720643-37720662 None:intergenic 60.0%
TCAGTTTCCGGTGCAGCCCT+AGG + chr7.1:37720547-37720566 None:intergenic 60.0%
TCTTGGGGAGGAGGTGATCG+AGG - chr7.1:37720267-37720286 MS.gene89294:CDS 60.0%
!! AGTCCAGTTGGTGGCGGAAG+AGG + chr7.1:37721804-37721823 None:intergenic 60.0%
!! CCTGATGGTGGATGAGGGTG+AGG + chr7.1:37722029-37722048 None:intergenic 60.0%
!! CCTGGTCTTGGTGGGGGAAT+TGG + chr7.1:37721894-37721913 None:intergenic 60.0%
!! CTAGCCTTGAGAGAGCGTGG+TGG - chr7.1:37722446-37722465 MS.gene89294:CDS 60.0%
!! GTGCATGCCTGGTCTTGGTG+GGG + chr7.1:37721901-37721920 None:intergenic 60.0%
!! TCCCTAGCCTTGAGAGAGCG+TGG - chr7.1:37722443-37722462 MS.gene89294:CDS 60.0%
!! TGCATGCCTGGTCTTGGTGG+GGG + chr7.1:37721900-37721919 None:intergenic 60.0%
CGTCCTCTTCCGCCACCAAC+TGG - chr7.1:37721798-37721817 MS.gene89294:CDS 65.0%
CTACCCGCTCCTCCCACTGA+TGG - chr7.1:37720241-37720260 MS.gene89294:CDS 65.0%
GCTGCACCTCCTCCAAGACC+TGG - chr7.1:37721762-37721781 MS.gene89294:CDS 65.0%
GGAGGAGCTTCCTCAGGAGG+CGG + chr7.1:37722104-37722123 None:intergenic 65.0%
GGCGGTGGGGATACTCCTTG+AGG + chr7.1:37722083-37722102 None:intergenic 65.0%
TCAGTGGGAGGAGCGGGTAG+AGG + chr7.1:37720241-37720260 None:intergenic 65.0%
! GAGGAGGTGCAGCAGGACCA+GGG + chr7.1:37721755-37721774 None:intergenic 65.0%
! GGTCTTGGAGGAGGTGCAGC+AGG + chr7.1:37721762-37721781 None:intergenic 65.0%
CTTCCTCAGGAGGCGGCGGT+GGG + chr7.1:37722097-37722116 None:intergenic 70.0%
GAGGTGCAGCAGGACCAGGG+AGG + chr7.1:37721752-37721771 None:intergenic 70.0%
GGAGCTTCCTCAGGAGGCGG+CGG + chr7.1:37722101-37722120 None:intergenic 70.0%
TTCCTCAGGAGGCGGCGGTG+GGG + chr7.1:37722096-37722115 None:intergenic 70.0%
! GGAGGAGGTGCAGCAGGACC+AGG + chr7.1:37721756-37721775 None:intergenic 70.0%
ATCCCCACCGCCGCCTCCTG+AGG - chr7.1:37722091-37722110 MS.gene89294:CDS 75.0%
GCTTCCTCAGGAGGCGGCGG+TGG + chr7.1:37722098-37722117 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 37720226 37722481 37720226 ID=MS.gene89294
chr7.1 mRNA 37720226 37722481 37720226 ID=MS.gene89294.t1;Parent=MS.gene89294
chr7.1 exon 37720226 37722481 37720226 ID=MS.gene89294.t1.exon1;Parent=MS.gene89294.t1
chr7.1 CDS 37720226 37722481 37720226 ID=cds.MS.gene89294.t1;Parent=MS.gene89294.t1
Gene Sequence

>MS.gene89294

ATGCCTATACTTCCTCTACCCGCTCCTCCCACTGATGGAAATCTTGGGGAGGAGGTGATCGAGGAAGCAGCACCGACAACTGTTGCCACACACACTAGAACTATTGGAATAATTCACCCCCCTCCAGACATTAGAACCATTATCGATAAAGCGTCTCAGTTCGTTGCTAAAAATGGTCTTGAATTCGAAAAGAGGATTATTGCTAATTATGCGGGCAATCCCAAGTTTAATTTCCTCAATCCATCTGATCCCTATCATGCATATTATCAGCACATGCTTTCTGAGTTTCGTAGTCAGAATCAATCTTCTACTCATAAACCTAGGGCTGCACCGGAAACTGATAGTATCGATGTAGCAACTACGGAGAAGCCTGATATTTCTGCCCGGTTTAAACCAGTAAAGAAAGTACTTGATCCTCCCGAGGCTGAGCAGTATACAGTTAGGCTTCCTGAAGGCATTACAAGGGAGGAGCTAGATATAATAAAGCTTACAGCACAATTTGTGGCTCGTAATGGGAAATCCTTTCTGACGGGATTGACAAGTAGGGAGATTAATAACCCCCAATTTCATTTCATGAAACCAACTCACAACATGTTTACATTTTTCACTTCCCTTGCTGATGCATATTCAAAGGTTTTGATGCCTCCAAAGGGGTTGACAGAGAAGCTAAAGAAGAGTGTCGACATGACTACCGTGCTTGAAAGATGTGTGAATAGGCTAGAATGGGAGTGTTCACAAGAGCACTCTAGGAAAAAGGCAGAAGATGAGATAGAGCAAGAAAGAATACAAATTGCTATGATTGATTGGCATGATTTTGTGGTGGTTGAATCAATAGACTTTGCTGATGATGAGGATGAAGAATTACCTCCTCCAATGACACTTGAGGAGGTGATAAGGCGAAACAAGATAACGCCTATGGAAGAAGATGATGCTGAGGTAGGGAAGGAAGTAGAAATGGATATGGACGAGGAAGAGGCCCAACTTGTTGAAGAGGGAACGAGAGCTGCTAGTTTGGAAGACAATGATGAAGGGAAGAAGAGTGAAGTCAGGGTTACTGAAGACCCTGAACCACCGATTAGGATTGTGAATAACTGGAAGAGACCAGAAGACAGGCTTCCTGCATATAGAGATTCAACCAAATTTGTGGTTTCTCCTATCACCGGTGAACTGATTCCTAATAGTGAAATGTCAGAACACATGCGAATTTCTCTCATTGATCCTAAGTACAAAGAACAGAAAGAAAGGATGTTTGCCAAAATACGAGAAACCACTCTGGCACAGGATGATGAAATCTCAAAAAACATTGTGGCACTTGCTCGTACTCGTCCTGATATTTTTGGTACTACCGAGGAAGAGGTTTCCAATGCTGTTAAGGCTGAAATTGAGAAGAAAAATGATGAGCAACCTAAGCAGGTTATATGGGATGGTCACAGCGGTAGTATTGGTCGTACTGCAAACCAAGCAATGTCACAAAATATTGGAAGTGAGGATCAAAATGATGCTTATAATAATGAATCTAAAAACCTCCCTGGTCCTGCTGCACCTCCTCCAAGACCTGGTATGACTTCAGTTCGTCCTCTTCCGCCACCAACTGGACTAGATTTGAATCTACCTCGTGGTCCTTTACATAACATGCAGTATTCTAATCCTAATAGTATTGGCCTTCCAATTCCCCCACCAAGACCAGGCATGCACATGACGCAATCTCTCCGGCCACCCCCAATGCATCCATCAATTCCTATGAATAACCAAGGAATGCCCATTCCTCCACCACCTGGATCTCAGTTCACTCCTTATGTTCCTCACCCTCATCCACCATCAGGGATGATGCTTATGATGCATCCACCACCTCCACCTCAAGGAGTATCCCCACCGCCGCCTCCTGAGGAAGCTCCTCCCTTGTTTCCAGAGGAACCAGAACCAAAGAGGATGAAGTATGACGATTCTGCTCTGATCCCTGAGGATAAATTTCTGGATCAGCATCAGGGACCTGCTCGCATCAGTATATATGTTCCTAATTTTGATGAAGGAAATCTCAAAGGACAAGTTCTGGAAATAACTGTGCAATCTTTGTCTGAAACTGTTGGCAGCCTGAAGGAAAAAATTGCCGGGGAGATTCAACTCCCTGCTAACAAGCAGAAATTGAGTGGAAAGCCAGGCTTTCTCAAGGACAATATGTCACTTGCACATTACAATGTCAGTGGAGGAGAAACTCTTTCCCTAGCCTTGAGAGAGCGTGGTGGTAGAAAGAGATGA
Protein sequence

>MS.gene89294.t1

MPILPLPAPPTDGNLGEEVIEEAAPTTVATHTRTIGIIHPPPDIRTIIDKASQFVAKNGLEFEKRIIANYAGNPKFNFLNPSDPYHAYYQHMLSEFRSQNQSSTHKPRAAPETDSIDVATTEKPDISARFKPVKKVLDPPEAEQYTVRLPEGITREELDIIKLTAQFVARNGKSFLTGLTSREINNPQFHFMKPTHNMFTFFTSLADAYSKVLMPPKGLTEKLKKSVDMTTVLERCVNRLEWECSQEHSRKKAEDEIEQERIQIAMIDWHDFVVVESIDFADDEDEELPPPMTLEEVIRRNKITPMEEDDAEVGKEVEMDMDEEEAQLVEEGTRAASLEDNDEGKKSEVRVTEDPEPPIRIVNNWKRPEDRLPAYRDSTKFVVSPITGELIPNSEMSEHMRISLIDPKYKEQKERMFAKIRETTLAQDDEISKNIVALARTRPDIFGTTEEEVSNAVKAEIEKKNDEQPKQVIWDGHSGSIGRTANQAMSQNIGSEDQNDAYNNESKNLPGPAAPPPRPGMTSVRPLPPPTGLDLNLPRGPLHNMQYSNPNSIGLPIPPPRPGMHMTQSLRPPPMHPSIPMNNQGMPIPPPPGSQFTPYVPHPHPPSGMMLMMHPPPPPQGVSPPPPPEEAPPLFPEEPEPKRMKYDDSALIPEDKFLDQHQGPARISIYVPNFDEGNLKGQVLEITVQSLSETVGSLKEKIAGEIQLPANKQKLSGKPGFLKDNMSLAHYNVSGGETLSLALRERGGRKR