Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90046.t1 | XP_003622165.1 | 96.9 | 224 | 7 | 0 | 1 | 224 | 3 | 226 | 1.20E-117 | 432.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90046.t1 | Q8LEF6 | 64.4 | 225 | 76 | 2 | 3 | 224 | 1 | 224 | 7.7e-73 | 275.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90046.t1 | G7L383 | 96.9 | 224 | 7 | 0 | 1 | 224 | 3 | 226 | 8.6e-118 | 432.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049614 | MS.gene90046 | 0.836493 | 9.06E-57 | -1.69E-46 |
| MS.gene050770 | MS.gene90046 | 0.802803 | 4.72E-49 | -1.69E-46 |
| MS.gene052271 | MS.gene90046 | 0.800425 | 1.45E-48 | -1.69E-46 |
| MS.gene052379 | MS.gene90046 | 0.814992 | 1.16E-51 | -1.69E-46 |
| MS.gene053322 | MS.gene90046 | 0.805864 | 1.09E-49 | -1.69E-46 |
| MS.gene059029 | MS.gene90046 | 0.812323 | 4.49E-51 | -1.69E-46 |
| MS.gene059960 | MS.gene90046 | 0.811999 | 5.29E-51 | -1.69E-46 |
| MS.gene061200 | MS.gene90046 | 0.815062 | 1.12E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90046.t1 | MTR_7g028600 | 96.875 | 224 | 7 | 0 | 1 | 224 | 3 | 226 | 3.85e-158 | 439 |
| MS.gene90046.t1 | MTR_7g079540 | 34.225 | 187 | 96 | 8 | 51 | 224 | 86 | 258 | 2.00e-17 | 79.7 |
| MS.gene90046.t1 | MTR_7g079540 | 34.225 | 187 | 96 | 8 | 51 | 224 | 86 | 258 | 3.79e-17 | 79.3 |
| MS.gene90046.t1 | MTR_3g096300 | 28.155 | 206 | 115 | 7 | 16 | 219 | 12 | 186 | 3.15e-16 | 75.9 |
| MS.gene90046.t1 | MTR_8g442660 | 28.155 | 206 | 115 | 7 | 16 | 219 | 12 | 186 | 3.15e-16 | 75.9 |
| MS.gene90046.t1 | MTR_1567s0010 | 36.196 | 163 | 87 | 6 | 71 | 229 | 244 | 393 | 2.28e-15 | 75.1 |
| MS.gene90046.t1 | MTR_7g033710 | 29.189 | 185 | 118 | 6 | 55 | 233 | 429 | 606 | 6.51e-13 | 67.8 |
| MS.gene90046.t1 | MTR_5g033080 | 31.148 | 183 | 109 | 7 | 51 | 227 | 456 | 627 | 4.19e-11 | 62.8 |
| MS.gene90046.t1 | MTR_2g018350 | 26.064 | 188 | 123 | 6 | 51 | 232 | 359 | 536 | 6.88e-11 | 62.0 |
| MS.gene90046.t1 | MTR_5g033080 | 31.148 | 183 | 109 | 7 | 51 | 227 | 281 | 452 | 7.08e-11 | 61.6 |
| MS.gene90046.t1 | MTR_6g078080 | 25.532 | 188 | 124 | 6 | 51 | 232 | 365 | 542 | 9.03e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90046.t1 | AT5G14100 | 64.889 | 225 | 75 | 2 | 3 | 224 | 1 | 224 | 9.62e-95 | 279 |
| MS.gene90046.t1 | AT1G65410 | 31.696 | 224 | 131 | 10 | 9 | 224 | 48 | 257 | 2.90e-15 | 74.3 |
| MS.gene90046.t1 | AT4G33460 | 30.058 | 173 | 98 | 5 | 50 | 219 | 39 | 191 | 3.04e-15 | 73.2 |
| MS.gene90046.t1 | AT4G18050 | 24.413 | 213 | 147 | 6 | 25 | 232 | 329 | 532 | 1.26e-11 | 64.3 |
| MS.gene90046.t1 | AT4G18050 | 24.413 | 213 | 147 | 6 | 25 | 232 | 339 | 542 | 1.27e-11 | 64.3 |
| MS.gene90046.t1 | AT5G46540 | 25.234 | 214 | 144 | 8 | 25 | 232 | 331 | 534 | 7.34e-11 | 62.0 |
| MS.gene90046.t1 | AT1G70610 | 30.769 | 182 | 111 | 8 | 51 | 227 | 455 | 626 | 9.54e-11 | 61.6 |
Find 58 sgRNAs with CRISPR-Local
Find 189 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATCCCCGATTTATTAATAT+TGG | 0.208491 | 7.4:+73477502 | MS.gene90046:CDS |
| AAGACAATACCGACCCTTTC+CGG | 0.262908 | 7.4:-73476387 | None:intergenic |
| GTACTTGATGAAGTCACTTT+TGG | 0.293522 | 7.4:+73477054 | MS.gene90046:CDS |
| CTCATCCAATATTAATAAAT+CGG | 0.302866 | 7.4:-73477507 | None:intergenic |
| ATTCATACCTCTCTGGAAAC+TGG | 0.375900 | 7.4:-73476410 | None:intergenic |
| ATATTGGATGAGCCTCTTGC+CGG | 0.392045 | 7.4:+73477518 | MS.gene90046:CDS |
| TCATCCAATATTAATAAATC+GGG | 0.396877 | 7.4:-73477506 | None:intergenic |
| TAACTATAGGTTGGATTAAG+TGG | 0.399225 | 7.4:+73477243 | MS.gene90046:intron |
| TTGCAGTTGTTTACCAAGTC+CGG | 0.405056 | 7.4:-73477537 | None:intergenic |
| TGGATTAAGTGGGATATCAT+TGG | 0.410784 | 7.4:+73477254 | MS.gene90046:CDS |
| GTAACTGCAGCGAGTGGTTG+AGG | 0.413989 | 7.4:-73474563 | None:intergenic |
| GGAATAAACAAACCAACATC+TGG | 0.434832 | 7.4:+73476300 | MS.gene90046:CDS |
| TGAACCCTTGGTGCCGGAAA+GGG | 0.437368 | 7.4:+73476374 | MS.gene90046:CDS |
| AGTTTATATTCATACCTCTC+TGG | 0.442467 | 7.4:-73476417 | None:intergenic |
| GATGAGCCTCTTGCCGGACT+TGG | 0.455049 | 7.4:+73477524 | MS.gene90046:CDS |
| GGCTCCAGAGGGCTATTCAC+TGG | 0.457763 | 7.4:+73477127 | MS.gene90046:CDS |
| CTGAACCCTTGGTGCCGGAA+AGG | 0.467485 | 7.4:+73476373 | MS.gene90046:CDS |
| ATCTTCTGAACCCTTGGTGC+CGG | 0.470612 | 7.4:+73476368 | MS.gene90046:CDS |
| AAGAAGAAAGTGGTGGTTTG+AGG | 0.474000 | 7.4:-73474492 | None:intergenic |
| TTAAGAGAGAATCTTGCTCT+AGG | 0.490247 | 7.4:+73477105 | MS.gene90046:CDS |
| TTACAAACGTCGCCTTGCCT+TGG | 0.493843 | 7.4:+73477305 | MS.gene90046:CDS |
| GGTGATCGGTGGATTAATAG+AGG | 0.499448 | 7.4:-73474461 | None:intergenic |
| AAGTCAATCTTCTGAACCCT+TGG | 0.517429 | 7.4:+73476362 | MS.gene90046:CDS |
| ACTTACTAATTGTATTGCCA+AGG | 0.520140 | 7.4:-73477322 | None:intergenic |
| TTGAGGAGAGCGAGAAAGTG+AGG | 0.528542 | 7.4:-73474518 | None:intergenic |
| GGATTAATAGAGGTAGTCAT+TGG | 0.533547 | 7.4:-73474451 | None:intergenic |
| AGTGAGGGAAAAGAAGAAAG+TGG | 0.547184 | 7.4:-73474502 | None:intergenic |
| TTTGGGTGGCCAAGACAAAA+GGG | 0.552958 | 7.4:+73477072 | MS.gene90046:CDS |
| CCGACCCTTTCCGGCACCAA+GGG | 0.562973 | 7.4:-73476378 | None:intergenic |
| AACTATAGGTTGGATTAAGT+GGG | 0.566656 | 7.4:+73477244 | MS.gene90046:intron |
| ATCTTGCTCTAGGGCTCCAG+AGG | 0.568170 | 7.4:+73477115 | MS.gene90046:CDS |
| TAAGAGAGAATCTTGCTCTA+GGG | 0.569781 | 7.4:+73477106 | MS.gene90046:CDS |
| AGGAAGTGAAAGGTGATCGG+TGG | 0.570097 | 7.4:-73474472 | None:intergenic |
| CTACCCAGTGAATAGCCCTC+TGG | 0.579623 | 7.4:-73477131 | None:intergenic |
| AAGGGTTCAGAAGATTGACT+TGG | 0.583046 | 7.4:-73476360 | None:intergenic |
| GCTCCAGAGGGCTATTCACT+GGG | 0.588567 | 7.4:+73477128 | MS.gene90046:CDS |
| AAGAAGCTACAATACGATTG+AGG | 0.591247 | 7.4:-73474535 | None:intergenic |
| CTAATTGTATTGCCAAGGCA+AGG | 0.596068 | 7.4:-73477317 | None:intergenic |
| AGAAGCTTAAGCTCAGTCCC+TGG | 0.601867 | 7.4:-73475170 | None:intergenic |
| ATAGAGGTAGTCATTGGCAT+AGG | 0.603786 | 7.4:-73474445 | None:intergenic |
| TGAGGAGAGCGAGAAAGTGA+GGG | 0.615692 | 7.4:-73474517 | None:intergenic |
| TTGAGGAAGTGAAAGGTGAT+CGG | 0.630954 | 7.4:-73474475 | None:intergenic |
| TGTTTACCAAGTCCGGCAAG+AGG | 0.631807 | 7.4:-73477530 | None:intergenic |
| TAACCGCCACTGAGAGAGTG+AGG | 0.633284 | 7.4:-73477285 | None:intergenic |
| ACCGACCCTTTCCGGCACCA+AGG | 0.641973 | 7.4:-73476379 | None:intergenic |
| CCCTTGGTGCCGGAAAGGGT+CGG | 0.645717 | 7.4:+73476378 | MS.gene90046:CDS |
| GATGTTAGCTATCAACCACC+AGG | 0.652280 | 7.4:+73475152 | MS.gene90046:CDS |
| AGCTTAAGCTCAGTCCCTGG+TGG | 0.655370 | 7.4:-73475167 | None:intergenic |
| ATGTGAATAGATCCAGATGT+TGG | 0.656736 | 7.4:-73476312 | None:intergenic |
| AGAAGAGTAACTGCAGCGAG+TGG | 0.657091 | 7.4:-73474569 | None:intergenic |
| TTGTCTTCCAGTTTCCAGAG+AGG | 0.657449 | 7.4:+73476403 | MS.gene90046:CDS |
| TGGTGGTTTGAGGAAGTGAA+AGG | 0.664873 | 7.4:-73474482 | None:intergenic |
| CATCCAATATTAATAAATCG+GGG | 0.670071 | 7.4:-73477505 | None:intergenic |
| AATCCTCACTCTCTCAGTGG+CGG | 0.673252 | 7.4:+73477282 | MS.gene90046:CDS |
| GAGGGAAAAGAAGAAAGTGG+TGG | 0.674357 | 7.4:-73474499 | None:intergenic |
| TCTTGCTCTAGGGCTCCAGA+GGG | 0.699634 | 7.4:+73477116 | MS.gene90046:CDS |
| AAGAATCCTCACTCTCTCAG+TGG | 0.707736 | 7.4:+73477279 | MS.gene90046:CDS |
| ATGTTAGCTATCAACCACCA+GGG | 0.741890 | 7.4:+73475153 | MS.gene90046:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATATTTTAAAAACCAAAT+CGG | - | chr7.4:73475816-73475835 | None:intergenic | 10.0% |
| !!! | ATTATGTATCATTAATTTTT+AGG | + | chr7.4:73475256-73475275 | MS.gene90046:intron | 10.0% |
| !!! | TCATTTTTTCAAATTATTAT+CGG | + | chr7.4:73475352-73475371 | MS.gene90046:intron | 10.0% |
| !!! | TGAATTTGATTTTTATTATA+CGG | + | chr7.4:73474831-73474850 | MS.gene90046:intron | 10.0% |
| !!! | TTATGTATCATTAATTTTTA+GGG | + | chr7.4:73475257-73475276 | MS.gene90046:intron | 10.0% |
| !!! | TTTTAAAATATTTCTTAGAA+CGG | + | chr7.4:73475823-73475842 | MS.gene90046:intron | 10.0% |
| !! | AATTGAATTATGAATCAATT+TGG | + | chr7.4:73475675-73475694 | MS.gene90046:intron | 15.0% |
| !! | ATTGAATTATGAATCAATTT+GGG | + | chr7.4:73475676-73475695 | MS.gene90046:intron | 15.0% |
| !! | GATTTATATTTGCATAATTA+GGG | + | chr7.4:73474940-73474959 | MS.gene90046:intron | 15.0% |
| !! | TAATTCAATTTGATGAAATT+TGG | - | chr7.4:73475665-73475684 | None:intergenic | 15.0% |
| !! | TGATTTATATTTGCATAATT+AGG | + | chr7.4:73474939-73474958 | MS.gene90046:intron | 15.0% |
| !!! | ATTAATTTTTAGGGATTTTT+AGG | + | chr7.4:73475266-73475285 | MS.gene90046:intron | 15.0% |
| !!! | CAATTTTTACTCATTTTTTA+TGG | + | chr7.4:73474750-73474769 | MS.gene90046:intron | 15.0% |
| !!! | CATATTTTACACATTTTTTA+TGG | + | chr7.4:73474660-73474679 | MS.gene90046:intron | 15.0% |
| !! | AAAGAACAATTGATTATAGA+AGG | - | chr7.4:73476642-73476661 | None:intergenic | 20.0% |
| !! | ATAGAGTTGAAAATTGAAAT+TGG | + | chr7.4:73475078-73475097 | MS.gene90046:intron | 20.0% |
| !! | ATTCAGAAAATAATTGCAAA+AGG | - | chr7.4:73476967-73476986 | None:intergenic | 20.0% |
| !! | CATTTCTTTAAATATTTCGA+GGG | + | chr7.4:73475894-73475913 | MS.gene90046:intron | 20.0% |
| !! | CTATAGTTATGAAAAACAAA+TGG | - | chr7.4:73477232-73477251 | None:intergenic | 20.0% |
| !! | CTCATCCAATATTAATAAAT+CGG | - | chr7.4:73477510-73477529 | None:intergenic | 20.0% |
| !! | CTTGAAATGATTTAAGAAAA+TGG | + | chr7.4:73475521-73475540 | MS.gene90046:intron | 20.0% |
| !! | TATGTATATGTAATGTCAAA+AGG | - | chr7.4:73477162-73477181 | None:intergenic | 20.0% |
| !! | TCACTAAAAAGTAAAAAAGA+TGG | - | chr7.4:73476186-73476205 | None:intergenic | 20.0% |
| !! | TCATCCAATATTAATAAATC+GGG | - | chr7.4:73477509-73477528 | None:intergenic | 20.0% |
| !! | TCATTTCTTTAAATATTTCG+AGG | + | chr7.4:73475893-73475912 | MS.gene90046:intron | 20.0% |
| !! | TCGAAATATTTAAAGAAATG+AGG | - | chr7.4:73475894-73475913 | None:intergenic | 20.0% |
| !! | TCTTAACATTCAAATATTCT+TGG | + | chr7.4:73476834-73476853 | MS.gene90046:intron | 20.0% |
| !! | TGAGTAACAATAAATTTGTA+GGG | - | chr7.4:73476566-73476585 | None:intergenic | 20.0% |
| !! | TTAAAGAAATGAGGATAAAT+TGG | - | chr7.4:73475885-73475904 | None:intergenic | 20.0% |
| !! | TTGAGTAACAATAAATTTGT+AGG | - | chr7.4:73476567-73476586 | None:intergenic | 20.0% |
| !!! | AATAAATAATACCTTTTCTC+TGG | - | chr7.4:73475218-73475237 | None:intergenic | 20.0% |
| !!! | ATTAGAGATAAGTTTTTCAT+CGG | + | chr7.4:73476764-73476783 | MS.gene90046:intron | 20.0% |
| !!! | ATTGTCATGTTTTTTGATTT+AGG | + | chr7.4:73475124-73475143 | MS.gene90046:intron | 20.0% |
| !!! | CATTTGTTTTTCATAACTAT+AGG | + | chr7.4:73477230-73477249 | MS.gene90046:intron | 20.0% |
| ! | AAATAATTGCAAAAGGCTAA+TGG | - | chr7.4:73476960-73476979 | None:intergenic | 25.0% |
| ! | AATCCCCGATTTATTAATAT+TGG | + | chr7.4:73477502-73477521 | MS.gene90046:CDS | 25.0% |
| ! | AGTAGTATATTTGCATGATT+AGG | + | chr7.4:73475051-73475070 | MS.gene90046:intron | 25.0% |
| ! | ATGATTGAAATCAAATGTGT+AGG | + | chr7.4:73475545-73475564 | MS.gene90046:intron | 25.0% |
| ! | CATCCAATATTAATAAATCG+GGG | - | chr7.4:73477508-73477527 | None:intergenic | 25.0% |
| ! | GAGTAACAATAAATTTGTAG+GGG | - | chr7.4:73476565-73476584 | None:intergenic | 25.0% |
| ! | GATTATAGAGTTGAAATTGA+AGG | + | chr7.4:73474962-73474981 | MS.gene90046:intron | 25.0% |
| ! | GTAGTATATTTGCATGATTA+GGG | + | chr7.4:73475052-73475071 | MS.gene90046:intron | 25.0% |
| ! | TCTATTCACATCCAAAAATA+CGG | + | chr7.4:73476324-73476343 | MS.gene90046:CDS | 25.0% |
| ! | TTTATTATACGGAATGCAAT+TGG | + | chr7.4:73474842-73474861 | MS.gene90046:intron | 25.0% |
| !! | TGTTTTTCATAACTATAGGT+TGG | + | chr7.4:73477234-73477253 | MS.gene90046:intron | 25.0% |
| !!! | AAACCTGTAAAAAGTGTTTA+GGG | - | chr7.4:73476867-73476886 | None:intergenic | 25.0% |
| !!! | ACATTTTTGGTAAAAGACAA+AGG | + | chr7.4:73476057-73476076 | MS.gene90046:intron | 25.0% |
| !!! | TGATTCAACTATTTTAAACC+AGG | - | chr7.4:73475770-73475789 | None:intergenic | 25.0% |
| AAATTAATCCAATTGTCGCT+TGG | - | chr7.4:73477456-73477475 | None:intergenic | 30.0% | |
| ACGAAGAATAGACATAGAAA+AGG | + | chr7.4:73476586-73476605 | MS.gene90046:intron | 30.0% | |
| ACTTACTAATTGTATTGCCA+AGG | - | chr7.4:73477325-73477344 | None:intergenic | 30.0% | |
| AGTTTATATTCATACCTCTC+TGG | - | chr7.4:73476420-73476439 | None:intergenic | 30.0% | |
| ATCTCTAAATCTCTACACAT+TGG | + | chr7.4:73476999-73477018 | MS.gene90046:intron | 30.0% | |
| ATTGGCATACAAAAATTCGT+AGG | - | chr7.4:73475867-73475886 | None:intergenic | 30.0% | |
| CAAAAACAAGCTAATAGAAC+TGG | - | chr7.4:73475641-73475660 | None:intergenic | 30.0% | |
| CGAAAACTTGAAACAGTTAT+TGG | - | chr7.4:73474619-73474638 | None:intergenic | 30.0% | |
| CTATTCACATCCAAAAATAC+GGG | + | chr7.4:73476325-73476344 | MS.gene90046:CDS | 30.0% | |
| GAACAATTGATTATAGAAGG+TGG | - | chr7.4:73476639-73476658 | None:intergenic | 30.0% | |
| GAGTTGAAAATTGAAATTGG+AGG | + | chr7.4:73475081-73475100 | MS.gene90046:intron | 30.0% | |
| GTGAAGTTTATTCATTTGAG+CGG | + | chr7.4:73475455-73475474 | MS.gene90046:intron | 30.0% | |
| GTTTGAAAAACTGAACTGAA+CGG | + | chr7.4:73475425-73475444 | MS.gene90046:intron | 30.0% | |
| TAACCAAACATGTAAACAAC+AGG | - | chr7.4:73476228-73476247 | None:intergenic | 30.0% | |
| TATTCACATCCAAAAATACG+GGG | + | chr7.4:73476326-73476345 | MS.gene90046:CDS | 30.0% | |
| TCGTAGGAAAATTCATATTG+AGG | - | chr7.4:73475851-73475870 | None:intergenic | 30.0% | |
| TTAAAACGAAAAGAGACCAT+AGG | - | chr7.4:73476267-73476286 | None:intergenic | 30.0% | |
| ! | AACTATAGGTTGGATTAAGT+GGG | + | chr7.4:73477244-73477263 | MS.gene90046:intron | 30.0% |
| ! | AGTGTTTTACTTGAATCTGA+AGG | + | chr7.4:73476798-73476817 | MS.gene90046:intron | 30.0% |
| ! | ATTCCTGTTGTTTACATGTT+TGG | + | chr7.4:73476222-73476241 | MS.gene90046:intron | 30.0% |
| ! | ATTTTTCACTTCCAGAGAAA+AGG | + | chr7.4:73475204-73475223 | MS.gene90046:CDS | 30.0% |
| ! | TAACTATAGGTTGGATTAAG+TGG | + | chr7.4:73477243-73477262 | MS.gene90046:intron | 30.0% |
| ! | TGCTCGATGTTTTACATTTT+TGG | + | chr7.4:73476044-73476063 | MS.gene90046:intron | 30.0% |
| ! | TTGCAACACAATACTTTTGT+AGG | + | chr7.4:73476741-73476760 | MS.gene90046:intron | 30.0% |
| ! | TTTTTATCCATTTGTCAGAG+TGG | + | chr7.4:73476908-73476927 | MS.gene90046:intron | 30.0% |
| !! | GAAACCTGTAAAAAGTGTTT+AGG | - | chr7.4:73476868-73476887 | None:intergenic | 30.0% |
| !! | TGAATCAATTTGGGACATTT+TGG | + | chr7.4:73475685-73475704 | MS.gene90046:intron | 30.0% |
| !! | TGATTTTAAGAGAGACAACA+AGG | - | chr7.4:73475983-73476002 | None:intergenic | 30.0% |
| !!! | ACAGATTTTGAGATTCTTAG+TGG | + | chr7.4:73474690-73474709 | MS.gene90046:intron | 30.0% |
| !!! | TACTTGATGAAGTCACTTTT+GGG | + | chr7.4:73477055-73477074 | MS.gene90046:CDS | 30.0% |
| AAACATGAAGCAAAACCAAG+CGG | - | chr7.4:73477391-73477410 | None:intergenic | 35.0% | |
| AAAGGCTAATGGAAACAGTT+AGG | - | chr7.4:73476949-73476968 | None:intergenic | 35.0% | |
| AACTACTATCCTTTCGAATC+CGG | + | chr7.4:73476007-73476026 | MS.gene90046:intron | 35.0% | |
| AAGAAGCTACAATACGATTG+AGG | - | chr7.4:73474538-73474557 | None:intergenic | 35.0% | |
| AAGTTACTGTTAAGGGGATT+GGG | + | chr7.4:73475923-73475942 | MS.gene90046:intron | 35.0% | |
| ACTACCACATGTGTTTACAT+CGG | + | chr7.4:73475323-73475342 | MS.gene90046:intron | 35.0% | |
| AGACATAGAAAAGGTCACAA+GGG | + | chr7.4:73476595-73476614 | MS.gene90046:intron | 35.0% | |
| ATAGTTGAATCATGACTCTG+AGG | + | chr7.4:73475778-73475797 | MS.gene90046:intron | 35.0% | |
| ATGTGAATAGATCCAGATGT+TGG | - | chr7.4:73476315-73476334 | None:intergenic | 35.0% | |
| ATTATACGGAATGCAATTGG+AGG | + | chr7.4:73474845-73474864 | MS.gene90046:intron | 35.0% | |
| ATTATTGTCACTCCTACCTA+TGG | + | chr7.4:73476248-73476267 | MS.gene90046:intron | 35.0% | |
| GAAATCAAATGTGTAGGAGT+CGG | + | chr7.4:73475551-73475570 | MS.gene90046:intron | 35.0% | |
| GAGCATGTATATGTGTTAAC+CGG | - | chr7.4:73476029-73476048 | None:intergenic | 35.0% | |
| GGAATAAACAAACCAACATC+TGG | + | chr7.4:73476300-73476319 | MS.gene90046:CDS | 35.0% | |
| GGATTAATAGAGGTAGTCAT+TGG | - | chr7.4:73474454-73474473 | None:intergenic | 35.0% | |
| GGTTAACACATACACAGTTT+GGG | + | chr7.4:73476109-73476128 | MS.gene90046:intron | 35.0% | |
| GTAGTCGAAGTTACTGTTAA+GGG | + | chr7.4:73475916-73475935 | MS.gene90046:intron | 35.0% | |
| GTATCAGCAACAAAATACCT+AGG | - | chr7.4:73477033-73477052 | None:intergenic | 35.0% | |
| GTTACAGTTTCATGAATTCG+TGG | + | chr7.4:73474804-73474823 | MS.gene90046:intron | 35.0% | |
| TAAGAGAGAATCTTGCTCTA+GGG | + | chr7.4:73477106-73477125 | MS.gene90046:CDS | 35.0% | |
| TAATCCGATGTAAACACATG+TGG | - | chr7.4:73475330-73475349 | None:intergenic | 35.0% | |
| TAGACATAGAAAAGGTCACA+AGG | + | chr7.4:73476594-73476613 | MS.gene90046:intron | 35.0% | |
| TAGTCGAAGTTACTGTTAAG+GGG | + | chr7.4:73475917-73475936 | MS.gene90046:intron | 35.0% | |
| TGACAACTAAAACATCTGAC+AGG | - | chr7.4:73477428-73477447 | None:intergenic | 35.0% | |
| TGGATTAAGTGGGATATCAT+TGG | + | chr7.4:73477254-73477273 | MS.gene90046:CDS | 35.0% | |
| TGGTTAACACATACACAGTT+TGG | + | chr7.4:73476108-73476127 | MS.gene90046:intron | 35.0% | |
| TTAAGAGAGAATCTTGCTCT+AGG | + | chr7.4:73477105-73477124 | MS.gene90046:CDS | 35.0% | |
| ! | CACAGTTTGGGTCTAATTTT+CGG | + | chr7.4:73476121-73476140 | MS.gene90046:intron | 35.0% |
| ! | TGATCATTACCCTTTTGTCT+TGG | - | chr7.4:73477084-73477103 | None:intergenic | 35.0% |
| !! | CGTTTTAAATAGCTTCTTGC+AGG | + | chr7.4:73476279-73476298 | MS.gene90046:intron | 35.0% |
| !! | CTACCCTAAACACTTTTTAC+AGG | + | chr7.4:73476861-73476880 | MS.gene90046:intron | 35.0% |
| !! | GTACTTGATGAAGTCACTTT+TGG | + | chr7.4:73477054-73477073 | MS.gene90046:CDS | 35.0% |
| !! | GTAGTGTTGATGTCATACAT+AGG | - | chr7.4:73475308-73475327 | None:intergenic | 35.0% |
| !! | TACTTACAAGCTCTGAAGTA+CGG | - | chr7.4:73475396-73475415 | None:intergenic | 35.0% |
| AACATGAAGCAAAACCAAGC+GGG | - | chr7.4:73477390-73477409 | None:intergenic | 40.0% | |
| AACGAAAAGAGACCATAGGT+AGG | - | chr7.4:73476263-73476282 | None:intergenic | 40.0% | |
| AAGAAGAAAGTGGTGGTTTG+AGG | - | chr7.4:73474495-73474514 | None:intergenic | 40.0% | |
| AAGGGTTCAGAAGATTGACT+TGG | - | chr7.4:73476363-73476382 | None:intergenic | 40.0% | |
| AAGTCAATCTTCTGAACCCT+TGG | + | chr7.4:73476362-73476381 | MS.gene90046:CDS | 40.0% | |
| AGACAACAAGGAGATACAAC+TGG | - | chr7.4:73475971-73475990 | None:intergenic | 40.0% | |
| AGTGAGGGAAAAGAAGAAAG+TGG | - | chr7.4:73474505-73474524 | None:intergenic | 40.0% | |
| ATAGAGGTAGTCATTGGCAT+AGG | - | chr7.4:73474448-73474467 | None:intergenic | 40.0% | |
| ATCCAAAAATACGGGGATGA+TGG | + | chr7.4:73476333-73476352 | MS.gene90046:CDS | 40.0% | |
| ATGTGTTAACCGGATTCGAA+AGG | - | chr7.4:73476019-73476038 | None:intergenic | 40.0% | |
| ATGTTAGCTATCAACCACCA+GGG | + | chr7.4:73475153-73475172 | MS.gene90046:CDS | 40.0% | |
| ATTATCGGCATTAACGTGTC+CGG | + | chr7.4:73475367-73475386 | MS.gene90046:intron | 40.0% | |
| CAATACACCACTCTGACAAA+TGG | - | chr7.4:73476918-73476937 | None:intergenic | 40.0% | |
| CGTTCTTTCAATTTCGCTGT+TGG | + | chr7.4:73476537-73476556 | MS.gene90046:intron | 40.0% | |
| CTAATTGTATTGCCAAGGCA+AGG | - | chr7.4:73477320-73477339 | None:intergenic | 40.0% | |
| GAAGTTACTGTTAAGGGGAT+TGG | + | chr7.4:73475922-73475941 | MS.gene90046:intron | 40.0% | |
| GGTAGTCGAAGTTACTGTTA+AGG | + | chr7.4:73475915-73475934 | MS.gene90046:intron | 40.0% | |
| TACGTGTAGTAGCTCATATC+TGG | + | chr7.4:73476088-73476107 | MS.gene90046:intron | 40.0% | |
| TCCAAAAATACGGGGATGAT+GGG | + | chr7.4:73476334-73476353 | MS.gene90046:CDS | 40.0% | |
| TGGAAAAACAACTCTCTTGC+AGG | + | chr7.4:73476156-73476175 | MS.gene90046:CDS | 40.0% | |
| TTGAGGAAGTGAAAGGTGAT+CGG | - | chr7.4:73474478-73474497 | None:intergenic | 40.0% | |
| TTGCAGTTGTTTACCAAGTC+CGG | - | chr7.4:73477540-73477559 | None:intergenic | 40.0% | |
| ! | AGCGGTTAAATCGCAGTTTT+GGG | + | chr7.4:73475473-73475492 | MS.gene90046:intron | 40.0% |
| ! | ATTCATACCTCTCTGGAAAC+TGG | - | chr7.4:73476413-73476432 | None:intergenic | 40.0% |
| ! | GCTTCATGTTTTCACCTGAT+TGG | + | chr7.4:73477400-73477419 | MS.gene90046:intron | 40.0% |
| !!! | AAATCGCAGTTTTGGGTGTT+TGG | + | chr7.4:73475480-73475499 | MS.gene90046:intron | 40.0% |
| !!! | TTGATGAAGTCACTTTTGGG+TGG | + | chr7.4:73477058-73477077 | MS.gene90046:CDS | 40.0% |
| AAGAATCCTCACTCTCTCAG+TGG | + | chr7.4:73477279-73477298 | MS.gene90046:CDS | 45.0% | |
| AAGACAATACCGACCCTTTC+CGG | - | chr7.4:73476390-73476409 | None:intergenic | 45.0% | |
| ATATTGGATGAGCCTCTTGC+CGG | + | chr7.4:73477518-73477537 | MS.gene90046:CDS | 45.0% | |
| GAACTGGCACTTAAGAGTGA+AGG | - | chr7.4:73475625-73475644 | None:intergenic | 45.0% | |
| GAGGGAAAAGAAGAAAGTGG+TGG | - | chr7.4:73474502-73474521 | None:intergenic | 45.0% | |
| GATGTTAGCTATCAACCACC+AGG | + | chr7.4:73475152-73475171 | MS.gene90046:CDS | 45.0% | |
| GGACAAAACTGCGATCAAAC+AGG | - | chr7.4:73475749-73475768 | None:intergenic | 45.0% | |
| TCAGTCAACCAAGCGACAAT+TGG | + | chr7.4:73477445-73477464 | MS.gene90046:intron | 45.0% | |
| TGGTGGTTTGAGGAAGTGAA+AGG | - | chr7.4:73474485-73474504 | None:intergenic | 45.0% | |
| TTGTCTTCCAGTTTCCAGAG+AGG | + | chr7.4:73476403-73476422 | MS.gene90046:CDS | 45.0% | |
| TTTGGGTGGCCAAGACAAAA+GGG | + | chr7.4:73477072-73477091 | MS.gene90046:CDS | 45.0% | |
| ! | GAGCGGTTAAATCGCAGTTT+TGG | + | chr7.4:73475472-73475491 | MS.gene90046:intron | 45.0% |
| ! | GGTCTAATTTTCGGACAGAG+CGG | + | chr7.4:73476130-73476149 | MS.gene90046:CDS | 45.0% |
| ! | TCCCATCATCCCCGTATTTT+TGG | - | chr7.4:73476338-73476357 | None:intergenic | 45.0% |
| !! | AAGCTCTGAAGTACGGATAC+CGG | - | chr7.4:73475389-73475408 | None:intergenic | 45.0% |
| !! | ACACATTGGTGTTGCAACCT+AGG | + | chr7.4:73477013-73477032 | MS.gene90046:intron | 45.0% |
| !! | GGTGATCGGTGGATTAATAG+AGG | - | chr7.4:73474464-73474483 | None:intergenic | 45.0% |
| !! | GTTTGATCGCAGTTTTGTCC+TGG | + | chr7.4:73475749-73475768 | MS.gene90046:intron | 45.0% |
| !! | TTTTGGGTGGCCAAGACAAA+AGG | + | chr7.4:73477071-73477090 | MS.gene90046:CDS | 45.0% |
| !!! | TTTATTTTTTTAAAATTTTC+AGG | + | chr7.4:73477475-73477494 | MS.gene90046:intron | 5.0% |
| AAAATGCAGCCATACCCGCT+TGG | + | chr7.4:73477373-73477392 | MS.gene90046:intron | 50.0% | |
| AATCCTCACTCTCTCAGTGG+CGG | + | chr7.4:73477282-73477301 | MS.gene90046:CDS | 50.0% | |
| ACATCTGACAGGAGCCAATC+AGG | - | chr7.4:73477417-73477436 | None:intergenic | 50.0% | |
| AGAAGAGTAACTGCAGCGAG+TGG | - | chr7.4:73474572-73474591 | None:intergenic | 50.0% | |
| AGAAGCTTAAGCTCAGTCCC+TGG | - | chr7.4:73475173-73475192 | None:intergenic | 50.0% | |
| AGGAAGTGAAAGGTGATCGG+TGG | - | chr7.4:73474475-73474494 | None:intergenic | 50.0% | |
| AGGTGGTAAGCCTGAAACGT+TGG | - | chr7.4:73476622-73476641 | None:intergenic | 50.0% | |
| GAAGCAAAACCAAGCGGGTA+TGG | - | chr7.4:73477385-73477404 | None:intergenic | 50.0% | |
| TCACAAGGGACCAACGTTTC+AGG | + | chr7.4:73476609-73476628 | MS.gene90046:intron | 50.0% | |
| TGAGGAGAGCGAGAAAGTGA+GGG | - | chr7.4:73474520-73474539 | None:intergenic | 50.0% | |
| TGTTTACCAAGTCCGGCAAG+AGG | - | chr7.4:73477533-73477552 | None:intergenic | 50.0% | |
| TTACAAACGTCGCCTTGCCT+TGG | + | chr7.4:73477305-73477324 | MS.gene90046:CDS | 50.0% | |
| TTGAGGAGAGCGAGAAAGTG+AGG | - | chr7.4:73474521-73474540 | None:intergenic | 50.0% | |
| ! | ATCTTCTGAACCCTTGGTGC+CGG | + | chr7.4:73476368-73476387 | MS.gene90046:CDS | 50.0% |
| ! | ATTTTCGGACAGAGCGGAAG+TGG | + | chr7.4:73476136-73476155 | MS.gene90046:CDS | 50.0% |
| ! | GGTCTCAACTCTTGCCGATT+TGG | + | chr7.4:73475799-73475818 | MS.gene90046:intron | 50.0% |
| AGCTTAAGCTCAGTCCCTGG+TGG | - | chr7.4:73475170-73475189 | None:intergenic | 55.0% | |
| CTACCCAGTGAATAGCCCTC+TGG | - | chr7.4:73477134-73477153 | None:intergenic | 55.0% | |
| GCTCCAGAGGGCTATTCACT+GGG | + | chr7.4:73477128-73477147 | MS.gene90046:CDS | 55.0% | |
| GTAACTGCAGCGAGTGGTTG+AGG | - | chr7.4:73474566-73474585 | None:intergenic | 55.0% | |
| TAACCGCCACTGAGAGAGTG+AGG | - | chr7.4:73477288-73477307 | None:intergenic | 55.0% | |
| !! | ATCTTGCTCTAGGGCTCCAG+AGG | + | chr7.4:73477115-73477134 | MS.gene90046:CDS | 55.0% |
| !! | TCTTGCTCTAGGGCTCCAGA+GGG | + | chr7.4:73477116-73477135 | MS.gene90046:CDS | 55.0% |
| !! | TGAACCCTTGGTGCCGGAAA+GGG | + | chr7.4:73476374-73476393 | MS.gene90046:CDS | 55.0% |
| GATGAGCCTCTTGCCGGACT+TGG | + | chr7.4:73477524-73477543 | MS.gene90046:CDS | 60.0% | |
| GGCTCCAGAGGGCTATTCAC+TGG | + | chr7.4:73477127-73477146 | MS.gene90046:CDS | 60.0% | |
| !! | CTGAACCCTTGGTGCCGGAA+AGG | + | chr7.4:73476373-73476392 | MS.gene90046:CDS | 60.0% |
| ACCGACCCTTTCCGGCACCA+AGG | - | chr7.4:73476382-73476401 | None:intergenic | 65.0% | |
| CCGACCCTTTCCGGCACCAA+GGG | - | chr7.4:73476381-73476400 | None:intergenic | 65.0% | |
| !! | CCCTTGGTGCCGGAAAGGGT+CGG | + | chr7.4:73476378-73476397 | MS.gene90046:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 73474442 | 73477577 | 73474442 | ID=MS.gene90046 |
| chr7.4 | mRNA | 73474442 | 73477577 | 73474442 | ID=MS.gene90046.t1;Parent=MS.gene90046 |
| chr7.4 | exon | 73474442 | 73474597 | 73474442 | ID=MS.gene90046.t1.exon1;Parent=MS.gene90046.t1 |
| chr7.4 | CDS | 73474442 | 73474597 | 73474442 | ID=cds.MS.gene90046.t1;Parent=MS.gene90046.t1 |
| chr7.4 | exon | 73475146 | 73475225 | 73475146 | ID=MS.gene90046.t1.exon2;Parent=MS.gene90046.t1 |
| chr7.4 | CDS | 73475146 | 73475225 | 73475146 | ID=cds.MS.gene90046.t1;Parent=MS.gene90046.t1 |
| chr7.4 | exon | 73476126 | 73476177 | 73476126 | ID=MS.gene90046.t1.exon3;Parent=MS.gene90046.t1 |
| chr7.4 | CDS | 73476126 | 73476177 | 73476126 | ID=cds.MS.gene90046.t1;Parent=MS.gene90046.t1 |
| chr7.4 | exon | 73476291 | 73476424 | 73476291 | ID=MS.gene90046.t1.exon4;Parent=MS.gene90046.t1 |
| chr7.4 | CDS | 73476291 | 73476424 | 73476291 | ID=cds.MS.gene90046.t1;Parent=MS.gene90046.t1 |
| chr7.4 | exon | 73477035 | 73477149 | 73477035 | ID=MS.gene90046.t1.exon5;Parent=MS.gene90046.t1 |
| chr7.4 | CDS | 73477035 | 73477149 | 73477035 | ID=cds.MS.gene90046.t1;Parent=MS.gene90046.t1 |
| chr7.4 | exon | 73477252 | 73477338 | 73477252 | ID=MS.gene90046.t1.exon6;Parent=MS.gene90046.t1 |
| chr7.4 | CDS | 73477252 | 73477338 | 73477252 | ID=cds.MS.gene90046.t1;Parent=MS.gene90046.t1 |
| chr7.4 | exon | 73477497 | 73477577 | 73477497 | ID=MS.gene90046.t1.exon7;Parent=MS.gene90046.t1 |
| chr7.4 | CDS | 73477497 | 73477577 | 73477497 | ID=cds.MS.gene90046.t1;Parent=MS.gene90046.t1 |
| Gene Sequence |
| Protein sequence |
