AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene053322


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene053322.t1 MTR_1g041315 79.310 145 30 0 1 145 101 245 7.06e-76 240
MS.gene053322.t1 MTR_1g041315 95.122 41 2 0 122 162 400 440 8.65e-17 80.9
MS.gene053322.t1 MTR_1g041320 93.636 110 7 0 163 272 34 143 3.26e-71 217
MS.gene053322.t1 MTR_7g066350 54.286 140 56 3 1 139 96 228 2.01e-36 135
MS.gene053322.t1 MTR_7g066350 67.273 55 12 1 122 176 382 430 2.03e-14 73.6
MS.gene053322.t1 MTR_7g066280 59.322 118 42 3 2 116 10 124 2.25e-34 129
MS.gene053322.t1 MTR_7g066340 51.799 139 53 6 4 137 102 231 5.50e-30 118
MS.gene053322.t1 MTR_7g066400 45.255 137 56 3 1 137 83 200 7.17e-27 109
MS.gene053322.t1 MTR_7g066400 68.889 45 13 1 119 162 366 410 3.68e-12 66.6
MS.gene053322.t1 MTR_7g066260 46.610 118 60 3 1 116 102 218 2.63e-24 102
MS.gene053322.t1 MTR_7g066260 70.732 41 12 0 122 162 395 435 3.25e-11 63.9
MS.gene053322.t1 MTR_7g066570 47.748 111 55 2 1 110 101 209 1.59e-22 97.8
MS.gene053322.t1 MTR_1g014060 40.157 127 72 3 3 128 89 212 7.38e-21 92.0
MS.gene053322.t1 MTR_7g066360 42.735 117 65 2 1 117 101 215 8.00e-20 89.7
MS.gene053322.t1 MTR_7g066360 38.983 118 54 3 122 239 382 481 6.98e-12 65.9
MS.gene053322.t1 MTR_7g066310 43.697 119 33 4 2 117 95 182 1.46e-19 88.6
MS.gene053322.t1 MTR_7g058710 41.322 121 64 3 1 116 87 205 2.43e-19 88.2
MS.gene053322.t1 MTR_7g058700 31.343 201 109 6 1 174 592 790 1.24e-17 83.6
MS.gene053322.t1 MTR_7g066290 36.522 115 70 3 6 118 107 220 6.77e-16 77.8
MS.gene053322.t1 MTR_7g066410 35.156 128 73 4 1 121 97 221 1.20e-13 71.2
MS.gene053322.t1 MTR_7g012680 42.268 97 52 3 1 96 101 194 9.07e-13 68.6
MS.gene053322.t1 MTR_4g019310 28.662 157 101 3 6 157 108 258 9.03e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene053322.t1 AT2G33450 82.051 117 11 3 163 273 29 141 7.65e-59 185

Find 62 sgRNAs with CRISPR-Local

Find 223 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGCTTTCTTCAATTCCTTTA+AGG 0.026457 1.2:-25508555 None:intergenic
CCTTTCCTCCACATCATTAA+AGG 0.169887 1.2:-25509416 None:intergenic
CGATATTCAATTTGAGTTTC+CGG 0.178358 1.2:-25508396 None:intergenic
GGCCCTGTTTGATTTCTTTC+CGG 0.253338 1.2:-25512021 None:intergenic
ACTGCAGTTTCTTTGTCTTA+TGG 0.268492 1.2:-25512064 None:intergenic
AGTTTCATAAATTCCCTTAA+AGG 0.269557 1.2:+25508541 MS.gene053322:CDS
ATCAAGTCCATTCTTCTCTA+TGG 0.282588 1.2:-25512171 None:intergenic
AGGTATTGTGTGAGCTTCTT+CGG 0.299011 1.2:+25508478 MS.gene053322:CDS
CTCTTTCTTGCTGATATTAA+CGG 0.315978 1.2:-25508707 None:intergenic
AGACTTGCAAAATTGAAAAT+AGG 0.330828 1.2:+25508458 MS.gene053322:CDS
GCTTTCTTCAATTCCTTTAA+GGG 0.331002 1.2:-25508554 None:intergenic
CTTTCCTCCACATCATTAAA+GGG 0.369666 1.2:-25509415 None:intergenic
TTCCCATGGGACTTTATTAC+CGG 0.373754 1.2:+25508377 None:intergenic
GGTATTGTGTGAGCTTCTTC+GGG 0.386622 1.2:+25508479 MS.gene053322:CDS
TTCTGACGATCTTTATGTCT+TGG 0.393766 1.2:+25508609 MS.gene053322:CDS
AAGAGAGTTTGGTGGGAAGC+TGG 0.407615 1.2:+25512104 MS.gene053322:CDS
ACCTCCAGTACAAGAGAGTT+TGG 0.413996 1.2:+25512093 MS.gene053322:CDS
CTAGCAACAATTGGTTGAAA+AGG 0.417846 1.2:-25510535 None:intergenic
CTTTGTCTTATGGTTTGAAA+AGG 0.427226 1.2:-25512054 None:intergenic
GTTTGAAAAGGATACTTTGT+TGG 0.430284 1.2:-25512042 None:intergenic
AATAACTTACTAGCAACAAT+TGG 0.433902 1.2:-25510544 None:intergenic
GTTTGATTTCTTTCCGGTGA+AGG 0.440508 1.2:-25512015 None:intergenic
TATGTCTTGGCGAATGAAGT+TGG 0.447005 1.2:+25508622 MS.gene053322:CDS
GAGGAAAGGGTCATCAGAAT+TGG 0.457366 1.2:+25509430 MS.gene053322:CDS
TCACCGGAAAGAAATCAAAC+AGG 0.457839 1.2:+25512018 MS.gene053322:CDS
AAAGCTTCGTTTGTCAACTA+AGG 0.463346 1.2:+25512139 MS.gene053322:CDS
TATGTCATGAATCTTACAAA+TGG 0.472969 1.2:+25512378 MS.gene053322:CDS
TTCTTGAGTTCTCAGTTAAG+TGG 0.484465 1.2:+25510457 MS.gene053322:CDS
CCCACCAAACTCTCTTGTAC+TGG 0.486040 1.2:-25512097 None:intergenic
TGAAAAGGAGAAGCAACAAT+TGG 0.492986 1.2:-25510520 None:intergenic
TTTGATTTCTTTCCGGTGAA+GGG 0.493506 1.2:-25512014 None:intergenic
TCTGTCACGATGAAGGTTAT+CGG 0.499573 1.2:-25509328 None:intergenic
CTTTAATGATGTGGAGGAAA+GGG 0.501360 1.2:+25509417 MS.gene053322:CDS
CGTTAATATCAGCAAGAAAG+AGG 0.508201 1.2:+25508708 MS.gene053322:CDS
AGAGAGTTTGGTGGGAAGCT+GGG 0.527154 1.2:+25512105 MS.gene053322:CDS
TTCGTATCTAGAAAGAATGA+AGG 0.531905 1.2:+25509390 MS.gene053322:CDS
TTGAAAACCATAGAGAAGAA+TGG 0.536514 1.2:+25512164 MS.gene053322:CDS
GAGAGAGTGTGTCCCTTCAC+CGG 0.545165 1.2:+25512002 MS.gene053322:intron
TTAAATCTTTGTCAGAAGCA+TGG 0.555180 1.2:+25508652 MS.gene053322:CDS
TGCAAGTCTTGTCCTTGCAG+TGG 0.555411 1.2:-25508444 None:intergenic
CCTTTAATGATGTGGAGGAA+AGG 0.563811 1.2:+25509416 MS.gene053322:CDS
CTTAAAGGAATTGAAGAAAG+CGG 0.567851 1.2:+25508556 MS.gene053322:CDS
CCAGTACAAGAGAGTTTGGT+GGG 0.583767 1.2:+25512097 MS.gene053322:CDS
ACAGGAGTTGATTCTGACTA+CGG 0.589928 1.2:+25512332 MS.gene053322:CDS
ACCAAACTCTCTTGTACTGG+AGG 0.590235 1.2:-25512094 None:intergenic
CATGTCGTCTGTCACGATGA+AGG 0.591702 1.2:-25509335 None:intergenic
CTTCATCGTGACAGACGACA+TGG 0.593911 1.2:+25509336 MS.gene053322:CDS
TTTCCGGTAATAAAGTCCCA+TGG 0.599022 1.2:-25508380 None:intergenic
GAAGGTCCCCTTTAATGATG+TGG 0.614179 1.2:+25509408 MS.gene053322:CDS
GGAGAAGCAACAATTGGTGA+GGG 0.617414 1.2:-25510514 None:intergenic
TTCCGGTAATAAAGTCCCAT+GGG 0.623389 1.2:-25508379 None:intergenic
GTGGTCTCAGAATCTCGTCT+CGG 0.624527 1.2:+25510476 MS.gene053322:CDS
AGGAGAAGCAACAATTGGTG+AGG 0.627644 1.2:-25510515 None:intergenic
TTTCCTCCACATCATTAAAG+GGG 0.632044 1.2:-25509414 None:intergenic
TTGCAGTGGTAGTACCTCAA+CGG 0.633931 1.2:-25508430 None:intergenic
GGTCCCCTTTAATGATGTGG+AGG 0.642716 1.2:+25509411 MS.gene053322:CDS
TCCAGTACAAGAGAGTTTGG+TGG 0.651100 1.2:+25512096 MS.gene053322:CDS
CACCGGAAAGAAATCAAACA+GGG 0.654830 1.2:+25512019 MS.gene053322:CDS
ACAACGGCAATAGATGACAA+TGG 0.672361 1.2:-25509367 None:intergenic
TCGATGAATCAGAGCCGTTG+AGG 0.674772 1.2:+25508416 MS.gene053322:CDS
TCTTTCTAGATACGAAACAA+CGG 0.706399 1.2:-25509383 None:intergenic
GTTGAGGTACTACCACTGCA+AGG 0.716243 1.2:+25508432 MS.gene053322:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACAATAAAAATAAAAAAGAA+CGG - chr1.2:25510665-25510684 None:intergenic 10.0%
!! TATTAAAAAAATTACCAAAT+GGG + chr1.2:25509557-25509576 MS.gene053322:intron 10.0%
!! TTATTAAAAAAATTACCAAA+TGG + chr1.2:25509556-25509575 MS.gene053322:intron 10.0%
!!! ATATTTTTCATATTTTATTG+CGG + chr1.2:25511414-25511433 MS.gene053322:intron 10.0%
!!! TTCTTTATGTATTATTTTTA+GGG + chr1.2:25512309-25512328 MS.gene053322:intron 10.0%
!!! TTTCTTTATGTATTATTTTT+AGG + chr1.2:25512308-25512327 MS.gene053322:intron 10.0%
!! CAAAAAAGAATTATTACTAT+AGG - chr1.2:25511520-25511539 None:intergenic 15.0%
!! CAATTTATATAGAATAAAGA+AGG - chr1.2:25509956-25509975 None:intergenic 15.0%
!! CATATTGTTATGAAAATAAA+AGG - chr1.2:25511298-25511317 None:intergenic 15.0%
!! CTTCTTTATTCTATATAAAT+TGG + chr1.2:25509954-25509973 MS.gene053322:intron 15.0%
!! TGTATAATAATCCTTATATT+TGG - chr1.2:25509254-25509273 None:intergenic 15.0%
!! TTTCAAAAAAAAAAAAATGG+TGG + chr1.2:25510035-25510054 MS.gene053322:intron 15.0%
!!! AATTTTTGAATTGTTGATAT+TGG + chr1.2:25509878-25509897 MS.gene053322:intron 15.0%
!!! CTTTTATTTTCATAACAATA+TGG + chr1.2:25511296-25511315 MS.gene053322:intron 15.0%
!!! TCCATTAATTAATAAGTTTT+TGG + chr1.2:25511812-25511831 MS.gene053322:intron 15.0%
!!! TTGCTCTAATTTTAATAAAA+TGG + chr1.2:25510923-25510942 MS.gene053322:intron 15.0%
!! AAAAAATAACATATTGCTGT+TGG + chr1.2:25511384-25511403 MS.gene053322:intron 20.0%
!! AAAAATAAATATTTGAAGGG+TGG + chr1.2:25510134-25510153 MS.gene053322:intron 20.0%
!! ACAACAAAAATTAATGAACA+TGG - chr1.2:25512279-25512298 None:intergenic 20.0%
!! GCCAAAAACTTATTAATTAA+TGG - chr1.2:25511816-25511835 None:intergenic 20.0%
!! GTTTAACACTAATCATTTAA+GGG - chr1.2:25511674-25511693 None:intergenic 20.0%
!! TAAACAATAATGATGTAGTT+TGG - chr1.2:25511903-25511922 None:intergenic 20.0%
!! TATGATTGTAATTGAGTAAA+AGG + chr1.2:25512247-25512266 MS.gene053322:intron 20.0%
!! TATTGCAAATCAATTTAACT+TGG + chr1.2:25511956-25511975 MS.gene053322:intron 20.0%
!! TGAAAAATTAATCTCAATGT+TGG + chr1.2:25509791-25509810 MS.gene053322:intron 20.0%
!! TTAAGTTAGTTAGATAGTTA+CGG - chr1.2:25510338-25510357 None:intergenic 20.0%
!! TTGCAATAATAATAATAAGC+AGG - chr1.2:25511944-25511963 None:intergenic 20.0%
!!! AACCAAATATGTGTATTTTT+TGG - chr1.2:25511866-25511885 None:intergenic 20.0%
!!! ACCAAATATGTGTATTTTTT+GGG - chr1.2:25511865-25511884 None:intergenic 20.0%
!!! AGTAGAATACGTTTTTATTT+TGG + chr1.2:25509698-25509717 MS.gene053322:intron 20.0%
!!! ATTTTCATAACAATATGGAT+AGG + chr1.2:25511301-25511320 MS.gene053322:intron 20.0%
!!! ATTTTTGTGATTTCAGAATT+AGG + chr1.2:25510433-25510452 MS.gene053322:intron 20.0%
!!! GTAAACACTAGTAATAATTT+TGG + chr1.2:25510811-25510830 MS.gene053322:intron 20.0%
!!! TGATATTCTAAAGTTATCTT+TGG + chr1.2:25508826-25508845 MS.gene053322:intron 20.0%
!!! TTTTCATAACAATATGGATA+GGG + chr1.2:25511302-25511321 MS.gene053322:intron 20.0%
!!! TTTTTGTGATTTCAGAATTA+GGG + chr1.2:25510434-25510453 MS.gene053322:intron 20.0%
! AAAAAGAGAAGAAAGAACAA+TGG + chr1.2:25510215-25510234 MS.gene053322:intron 25.0%
! AACATATGTTACATACAAAC+AGG - chr1.2:25511638-25511657 None:intergenic 25.0%
! AACATTCAACTACCAAATAA+AGG - chr1.2:25509926-25509945 None:intergenic 25.0%
! AAGGAATTATTGCATAAAGA+CGG - chr1.2:25511134-25511153 None:intergenic 25.0%
! AATAACTTACTAGCAACAAT+TGG - chr1.2:25510547-25510566 None:intergenic 25.0%
! ACCCAAAAAATACACATATT+TGG + chr1.2:25511861-25511880 MS.gene053322:intron 25.0%
! ACTAATCATTTAAGGAAAAC+AGG - chr1.2:25511722-25511741 None:intergenic 25.0%
! AGAAATTGGAAACATCAATA+GGG + chr1.2:25511271-25511290 MS.gene053322:intron 25.0%
! AGACTTGCAAAATTGAAAAT+AGG + chr1.2:25508458-25508477 MS.gene053322:CDS 25.0%
! AGTTTCATAAATTCCCTTAA+AGG + chr1.2:25508541-25508560 MS.gene053322:CDS 25.0%
! CAATCACATTTAGTAATACT+AGG - chr1.2:25509489-25509508 None:intergenic 25.0%
! CGTTTAACACTAATCATTTA+AGG - chr1.2:25511675-25511694 None:intergenic 25.0%
! GTGGACAAATTAATAGAAAT+TGG + chr1.2:25511257-25511276 MS.gene053322:intron 25.0%
! GTTTGTATGTAACATATGTT+AGG + chr1.2:25511638-25511657 MS.gene053322:intron 25.0%
! TAAAAAAATTACCAAATGGG+TGG + chr1.2:25509560-25509579 MS.gene053322:intron 25.0%
! TAAGTTAGTTAGATAGTTAC+GGG - chr1.2:25510337-25510356 None:intergenic 25.0%
! TACTAAATCATGATATACAG+TGG - chr1.2:25509682-25509701 None:intergenic 25.0%
! TAGAAATTGGAAACATCAAT+AGG + chr1.2:25511270-25511289 MS.gene053322:intron 25.0%
! TCCTTATATTTGGTATCTAT+CGG - chr1.2:25509244-25509263 None:intergenic 25.0%
! TCTCTGAATAAATAAAACCA+AGG - chr1.2:25511986-25512005 None:intergenic 25.0%
! TGATGAAATTAATGACAAGA+TGG + chr1.2:25508958-25508977 MS.gene053322:intron 25.0%
! TTAAAGATAAAGTCTGTCAA+AGG - chr1.2:25508863-25508882 None:intergenic 25.0%
! TTGTATATCGCAATTAGATT+AGG - chr1.2:25510710-25510729 None:intergenic 25.0%
! TTTAAAAAGGAACAGTTTGT+TGG + chr1.2:25508878-25508897 MS.gene053322:intron 25.0%
!! AAAGTACTATATTAGAGCTA+GGG + chr1.2:25511209-25511228 MS.gene053322:intron 25.0%
!! GACAGACTTTATCTTTAAAA+AGG + chr1.2:25508865-25508884 MS.gene053322:intron 25.0%
!! TAAAGTACTATATTAGAGCT+AGG + chr1.2:25511208-25511227 MS.gene053322:intron 25.0%
!!! TATGTATTATTTTTAGGGAC+AGG + chr1.2:25512314-25512333 MS.gene053322:intron 25.0%
!!! TGATTGTTTTTCTACCAATA+GGG + chr1.2:25509503-25509522 MS.gene053322:intron 25.0%
AAGTTAGTTAGATAGTTACG+GGG - chr1.2:25510336-25510355 None:intergenic 30.0%
AATAAATATTTGAAGGGTGG+TGG + chr1.2:25510137-25510156 MS.gene053322:intron 30.0%
ACTATAGGCAAACATAAACT+AGG - chr1.2:25511505-25511524 None:intergenic 30.0%
AGTTCAAATTGCATAGGAAT+CGG - chr1.2:25509205-25509224 None:intergenic 30.0%
ATAAATATTTGAAGGGTGGT+GGG + chr1.2:25510138-25510157 MS.gene053322:intron 30.0%
ATATGACCTTCAGTAAAAAC+AGG - chr1.2:25511777-25511796 None:intergenic 30.0%
CTCTTTCTTGCTGATATTAA+CGG - chr1.2:25508710-25508729 None:intergenic 30.0%
CTTAAAGGAATTGAAGAAAG+CGG + chr1.2:25508556-25508575 MS.gene053322:CDS 30.0%
CTTTGTCTTATGGTTTGAAA+AGG - chr1.2:25512057-25512076 None:intergenic 30.0%
GATGTTTGTGATTCAAATCT+TGG + chr1.2:25509656-25509675 MS.gene053322:intron 30.0%
GCTTTCTTCAATTCCTTTAA+GGG - chr1.2:25508557-25508576 None:intergenic 30.0%
GTTTGAAAAGGATACTTTGT+TGG - chr1.2:25512045-25512064 None:intergenic 30.0%
TAACGCATCTACAAAAAACA+AGG - chr1.2:25511153-25511172 None:intergenic 30.0%
TCTTTCTAGATACGAAACAA+CGG - chr1.2:25509386-25509405 None:intergenic 30.0%
TTAAATCTTTGTCAGAAGCA+TGG + chr1.2:25508652-25508671 MS.gene053322:CDS 30.0%
TTCATGAGTTCAAATTGCAT+AGG - chr1.2:25509211-25509230 None:intergenic 30.0%
TTCGTATCTAGAAAGAATGA+AGG + chr1.2:25509390-25509409 MS.gene053322:CDS 30.0%
TTGAAAACCATAGAGAAGAA+TGG + chr1.2:25512164-25512183 MS.gene053322:CDS 30.0%
TTGTTGAATCTTGTGTTAAG+TGG + chr1.2:25511238-25511257 MS.gene053322:intron 30.0%
! AAAAGTACACAAACCATAGT+TGG - chr1.2:25511351-25511370 None:intergenic 30.0%
! CGATATTCAATTTGAGTTTC+CGG - chr1.2:25508399-25508418 None:intergenic 30.0%
! TAGTGTTAAACGTGTTGTTA+GGG + chr1.2:25511683-25511702 MS.gene053322:intron 30.0%
! TCAGAGTGAATATCGATTAT+TGG - chr1.2:25510574-25510593 None:intergenic 30.0%
! TGAACAAATTCTGTTTCTTG+AGG + chr1.2:25509009-25509028 MS.gene053322:intron 30.0%
! TTAGTGTTAAACGTGTTGTT+AGG + chr1.2:25511682-25511701 MS.gene053322:intron 30.0%
!! CAATGTTGGTTCATATCAAA+AGG + chr1.2:25509805-25509824 MS.gene053322:intron 30.0%
!! GTGATTGTTTTTCTACCAAT+AGG + chr1.2:25509502-25509521 MS.gene053322:intron 30.0%
!!! ATAAGACCTGTTTTTACTGA+AGG + chr1.2:25511768-25511787 MS.gene053322:intron 30.0%
AAAGCTTCGTTTGTCAACTA+AGG + chr1.2:25512139-25512158 MS.gene053322:CDS 35.0%
AAGAGAAGAAAGAACAATGG+CGG + chr1.2:25510218-25510237 MS.gene053322:intron 35.0%
ACAATACAAAACCACCCATT+TGG - chr1.2:25509574-25509593 None:intergenic 35.0%
ACTCTAACATGTGTTAGACA+AGG + chr1.2:25510982-25511001 MS.gene053322:intron 35.0%
ACTGCAGTTTCTTTGTCTTA+TGG - chr1.2:25512067-25512086 None:intergenic 35.0%
ACTTGATGCAGTTGCAAAAA+AGG + chr1.2:25512187-25512206 MS.gene053322:CDS 35.0%
AGAACATGCATAACATGTTG+TGG + chr1.2:25511556-25511575 MS.gene053322:intron 35.0%
AGAAGCAAATAAGATTGGGT+TGG + chr1.2:25510183-25510202 MS.gene053322:intron 35.0%
AGGCAAACATAAACTAGGAA+CGG - chr1.2:25511500-25511519 None:intergenic 35.0%
ATCAAGTCCATTCTTCTCTA+TGG - chr1.2:25512174-25512193 None:intergenic 35.0%
CAATATGGATAGGGAAGAAA+TGG + chr1.2:25511311-25511330 MS.gene053322:intron 35.0%
CGCTTTCTTCAATTCCTTTA+AGG - chr1.2:25508558-25508577 None:intergenic 35.0%
CGTTAATATCAGCAAGAAAG+AGG + chr1.2:25508708-25508727 MS.gene053322:CDS 35.0%
CTAGCAACAATTGGTTGAAA+AGG - chr1.2:25510538-25510557 None:intergenic 35.0%
CTCTAACATGTGTTAGACAA+GGG + chr1.2:25510983-25511002 MS.gene053322:intron 35.0%
CTTGTATCATAAGCACTTAC+TGG + chr1.2:25511061-25511080 MS.gene053322:intron 35.0%
CTTTAATGATGTGGAGGAAA+GGG + chr1.2:25509417-25509436 MS.gene053322:CDS 35.0%
CTTTCCTCCACATCATTAAA+GGG - chr1.2:25509418-25509437 None:intergenic 35.0%
GAGACAGAGAGAATAATCAA+CGG - chr1.2:25508772-25508791 None:intergenic 35.0%
GCCGATAGATACCAAATATA+AGG + chr1.2:25509240-25509259 MS.gene053322:intron 35.0%
GCGTAGAAGCAAATAAGATT+GGG + chr1.2:25510179-25510198 MS.gene053322:intron 35.0%
GTAATTTAGACCCAAGAAAC+CGG + chr1.2:25508900-25508919 MS.gene053322:intron 35.0%
TAACCGCAAACGAAACATAT+CGG - chr1.2:25509748-25509767 None:intergenic 35.0%
TAATAAGCAGGATTTGCAGT+TGG - chr1.2:25511932-25511951 None:intergenic 35.0%
TGAAAAGGAGAAGCAACAAT+TGG - chr1.2:25510523-25510542 None:intergenic 35.0%
TGACATATCCTCCAGAAATA+GGG - chr1.2:25509303-25509322 None:intergenic 35.0%
TGCGTAGAAGCAAATAAGAT+TGG + chr1.2:25510178-25510197 MS.gene053322:intron 35.0%
TGCTTAAGAAACTCGGTTAT+AGG - chr1.2:25511591-25511610 None:intergenic 35.0%
TGGTATCTATCGGCAATATT+TGG - chr1.2:25509234-25509253 None:intergenic 35.0%
TTCTGACGATCTTTATGTCT+TGG + chr1.2:25508609-25508628 MS.gene053322:CDS 35.0%
TTCTTGAGTTCTCAGTTAAG+TGG + chr1.2:25510457-25510476 MS.gene053322:CDS 35.0%
TTGACATATCCTCCAGAAAT+AGG - chr1.2:25509304-25509323 None:intergenic 35.0%
TTTCCTCCACATCATTAAAG+GGG - chr1.2:25509417-25509436 None:intergenic 35.0%
! AACCATAGTTGGTCTCTTAA+AGG - chr1.2:25511340-25511359 None:intergenic 35.0%
! ATTTCTGGAGGATATGTCAA+AGG + chr1.2:25509304-25509323 MS.gene053322:intron 35.0%
! TACCTTTAAGAGACCAACTA+TGG + chr1.2:25511335-25511354 MS.gene053322:intron 35.0%
! TCATATTTTATTGCGGACAG+AGG + chr1.2:25511421-25511440 MS.gene053322:intron 35.0%
! TTTGATTTCTTTCCGGTGAA+GGG - chr1.2:25512017-25512036 None:intergenic 35.0%
!! CAATTTAACTTGGTGTACCT+TGG + chr1.2:25511966-25511985 MS.gene053322:intron 35.0%
!! CATACTAGTTTGTTTCTTGC+AGG + chr1.2:25511031-25511050 MS.gene053322:intron 35.0%
!! CTGCGCTATTTTCCTTTATT+TGG + chr1.2:25509911-25509930 MS.gene053322:intron 35.0%
!! TTGTTTTTCTACCAATAGGG+TGG + chr1.2:25509506-25509525 MS.gene053322:intron 35.0%
!!! GTATTTTTTGGGTGAAACCA+TGG - chr1.2:25511854-25511873 None:intergenic 35.0%
AAAGGGTCATCAGAATTGGT+AGG + chr1.2:25509434-25509453 MS.gene053322:intron 40.0%
ACAACGGCAATAGATGACAA+TGG - chr1.2:25509370-25509389 None:intergenic 40.0%
ACCTACGTGCTTAAGAAACT+CGG - chr1.2:25511598-25511617 None:intergenic 40.0%
AGAGAAGAAAGAACAATGGC+GGG + chr1.2:25510219-25510238 MS.gene053322:intron 40.0%
ATATACAACACTCCTCCCAA+GGG - chr1.2:25509079-25509098 None:intergenic 40.0%
CACCGGAAAGAAATCAAACA+GGG + chr1.2:25512019-25512038 MS.gene053322:CDS 40.0%
CATCAGAATTGGTAGGAAAG+AGG + chr1.2:25509441-25509460 MS.gene053322:intron 40.0%
CCTTTAATGATGTGGAGGAA+AGG + chr1.2:25509416-25509435 MS.gene053322:CDS 40.0%
CCTTTCCTCCACATCATTAA+AGG - chr1.2:25509419-25509438 None:intergenic 40.0%
GAATTGGTAGGAAAGAGGTA+AGG + chr1.2:25509446-25509465 MS.gene053322:intron 40.0%
GACATATCCTCCAGAAATAG+GGG - chr1.2:25509302-25509321 None:intergenic 40.0%
GATCCTAAATCCCCTATTTC+TGG + chr1.2:25509289-25509308 MS.gene053322:intron 40.0%
GCTCTTAGTTAGAGATACCA+TGG + chr1.2:25511834-25511853 MS.gene053322:intron 40.0%
TATGTCTTGGCGAATGAAGT+TGG + chr1.2:25508622-25508641 MS.gene053322:CDS 40.0%
TCAAATTGCATAGGAATCGG+TGG - chr1.2:25509202-25509221 None:intergenic 40.0%
TCACCGGAAAGAAATCAAAC+AGG + chr1.2:25512018-25512037 MS.gene053322:CDS 40.0%
TCTGTCACGATGAAGGTTAT+CGG - chr1.2:25509331-25509350 None:intergenic 40.0%
TGCATAAAGACGGTGTTTAC+TGG - chr1.2:25511124-25511143 None:intergenic 40.0%
TTCACTCTAACGATGAAAGC+TGG - chr1.2:25511468-25511487 None:intergenic 40.0%
TTGCCGATATGTTTCGTTTG+CGG + chr1.2:25509742-25509761 MS.gene053322:intron 40.0%
! AAAATTCCGACCGGTTTCTT+GGG - chr1.2:25508913-25508932 None:intergenic 40.0%
! AAGCATGACTGAGTTGAGTT+CGG + chr1.2:25509144-25509163 MS.gene053322:intron 40.0%
! ACAGGAGTTGATTCTGACTA+CGG + chr1.2:25512332-25512351 MS.gene053322:CDS 40.0%
! AGGTATTGTGTGAGCTTCTT+CGG + chr1.2:25508478-25508497 MS.gene053322:CDS 40.0%
! AGTTTTCTAACCTTCCCCTT+GGG + chr1.2:25509061-25509080 MS.gene053322:intron 40.0%
! ATACAAACAAGCGCGCATTT+TGG + chr1.2:25510724-25510743 MS.gene053322:intron 40.0%
! CTGTTGCTAGTTTACGTACA+TGG + chr1.2:25510772-25510791 MS.gene053322:intron 40.0%
! GTTTGATTTCTTTCCGGTGA+AGG - chr1.2:25512018-25512037 None:intergenic 40.0%
! TAGTTTTCTAACCTTCCCCT+TGG + chr1.2:25509060-25509079 MS.gene053322:intron 40.0%
! TTTTCTACCAATAGGGTGGT+TGG + chr1.2:25509510-25509529 MS.gene053322:intron 40.0%
!! GGAGTGTTGTATATGCTTCA+AGG + chr1.2:25509085-25509104 MS.gene053322:intron 40.0%
!!! GTTTTAACTCTGACGTGTTG+TGG + chr1.2:25509833-25509852 MS.gene053322:intron 40.0%
AAGTGTTCCAACCACCCTAT+TGG - chr1.2:25509520-25509539 None:intergenic 45.0%
ACCAAACTCTCTTGTACTGG+AGG - chr1.2:25512097-25512116 None:intergenic 45.0%
ACCGAGTTTCTTAAGCACGT+AGG + chr1.2:25511594-25511613 MS.gene053322:intron 45.0%
ACCTCCAGTACAAGAGAGTT+TGG + chr1.2:25512093-25512112 MS.gene053322:CDS 45.0%
AGGAGAAGCAACAATTGGTG+AGG - chr1.2:25510518-25510537 None:intergenic 45.0%
CACAAGTCAGTGTCAAACAC+AGG - chr1.2:25510872-25510891 None:intergenic 45.0%
CATATACAACACTCCTCCCA+AGG - chr1.2:25509080-25509099 None:intergenic 45.0%
CCAGTACAAGAGAGTTTGGT+GGG + chr1.2:25512097-25512116 MS.gene053322:CDS 45.0%
CCTCCAGAAATAGGGGATTT+AGG - chr1.2:25509295-25509314 None:intergenic 45.0%
CTCGAATCCAAAATTCCGAC+CGG - chr1.2:25508922-25508941 None:intergenic 45.0%
GAAGGTCCCCTTTAATGATG+TGG + chr1.2:25509408-25509427 MS.gene053322:CDS 45.0%
GAGGAAAGGGTCATCAGAAT+TGG + chr1.2:25509430-25509449 MS.gene053322:CDS 45.0%
GATGCAGTTGCAAAAAAGGC+TGG + chr1.2:25512191-25512210 MS.gene053322:CDS 45.0%
GGAGAAGCAACAATTGGTGA+GGG - chr1.2:25510517-25510536 None:intergenic 45.0%
GGTATTGTGTGAGCTTCTTC+GGG + chr1.2:25508479-25508498 MS.gene053322:CDS 45.0%
TATACAACACTCCTCCCAAG+GGG - chr1.2:25509078-25509097 None:intergenic 45.0%
TCCAGTACAAGAGAGTTTGG+TGG + chr1.2:25512096-25512115 MS.gene053322:CDS 45.0%
TTACGGGGTGAGAATGAAGA+GGG - chr1.2:25510321-25510340 None:intergenic 45.0%
TTATTGCGGACAGAGGAGTT+TGG + chr1.2:25511428-25511447 MS.gene053322:intron 45.0%
TTGCAGTGGTAGTACCTCAA+CGG - chr1.2:25508433-25508452 None:intergenic 45.0%
TTTAGACCCAAGAAACCGGT+CGG + chr1.2:25508904-25508923 MS.gene053322:intron 45.0%
! ATGACTGAGTTGAGTTCGGA+CGG + chr1.2:25509148-25509167 MS.gene053322:intron 45.0%
! CAAAATTCCGACCGGTTTCT+TGG - chr1.2:25508914-25508933 None:intergenic 45.0%
! CAAGAAACCGGTCGGAATTT+TGG + chr1.2:25508912-25508931 MS.gene053322:intron 45.0%
! GGCCCTGTTTGATTTCTTTC+CGG - chr1.2:25512024-25512043 None:intergenic 45.0%
! GTCGGAATTTTGGATTCGAG+AGG + chr1.2:25508922-25508941 MS.gene053322:intron 45.0%
! TGAAGAGGGTTTGAGAGTGT+TGG - chr1.2:25510307-25510326 None:intergenic 45.0%
!! AATATTTGAAGGGTGGTGGG+TGG + chr1.2:25510141-25510160 MS.gene053322:intron 45.0%
!! AGATGGTCGTGAAAGTACTG+AGG + chr1.2:25508975-25508994 MS.gene053322:intron 45.0%
!! CCTAAATCCCCTATTTCTGG+AGG + chr1.2:25509292-25509311 MS.gene053322:intron 45.0%
!! AAAAAAAAATAAATATTTGA+AGG + chr1.2:25510130-25510149 MS.gene053322:intron 5.0%
!! AAAAAAAATAAATATTTGAA+GGG + chr1.2:25510131-25510150 MS.gene053322:intron 5.0%
!!! AATTTTTTTAATAAATTCAA+TGG - chr1.2:25509550-25509569 None:intergenic 5.0%
!!! ATTTTTCAAAAAAAAAAAAA+TGG + chr1.2:25510032-25510051 MS.gene053322:intron 5.0%
!!! ATTTTTTTTTTATTTTTTTG+AGG - chr1.2:25510120-25510139 None:intergenic 5.0%
CATGTCGTCTGTCACGATGA+AGG - chr1.2:25509338-25509357 None:intergenic 50.0%
CCCACCAAACTCTCTTGTAC+TGG - chr1.2:25512100-25512119 None:intergenic 50.0%
CTTCATCGTGACAGACGACA+TGG + chr1.2:25509336-25509355 MS.gene053322:CDS 50.0%
GCGCATAGAAGCGAAAACGA+AGG - chr1.2:25510268-25510287 None:intergenic 50.0%
GGTCCCCTTTAATGATGTGG+AGG + chr1.2:25509411-25509430 MS.gene053322:CDS 50.0%
GTGGTCTCAGAATCTCGTCT+CGG + chr1.2:25510476-25510495 MS.gene053322:CDS 50.0%
GTTACGGGGTGAGAATGAAG+AGG - chr1.2:25510322-25510341 None:intergenic 50.0%
TCGATGAATCAGAGCCGTTG+AGG + chr1.2:25508416-25508435 MS.gene053322:CDS 50.0%
TTTCTAACCTTCCCCTTGGG+AGG + chr1.2:25509064-25509083 MS.gene053322:intron 50.0%
! AAGAGAGTTTGGTGGGAAGC+TGG + chr1.2:25512104-25512123 MS.gene053322:CDS 50.0%
! AGAGAGTTTGGTGGGAAGCT+GGG + chr1.2:25512105-25512124 MS.gene053322:CDS 50.0%
! GTTGAGGTACTACCACTGCA+AGG + chr1.2:25508432-25508451 MS.gene053322:CDS 50.0%
! TGCAAGTCTTGTCCTTGCAG+TGG - chr1.2:25508447-25508466 None:intergenic 50.0%
GCGGGTTCTGCAGTATCACT+TGG + chr1.2:25510237-25510256 MS.gene053322:intron 55.0%
! GAGAGAGTGTGTCCCTTCAC+CGG + chr1.2:25512002-25512021 MS.gene053322:intron 55.0%
!! ATTTTGGCGTGCAGGCTGTC+TGG + chr1.2:25510740-25510759 MS.gene053322:intron 55.0%
CAACACTCCTCCCAAGGGGA+AGG - chr1.2:25509074-25509093 None:intergenic 60.0%
!! AAGCGCGCATTTTGGCGTGC+AGG + chr1.2:25510732-25510751 MS.gene053322:intron 60.0%
! CGTGCAGGCTGTCTGGAGCA+CGG + chr1.2:25510747-25510766 MS.gene053322:intron 65.0%
! GTGCAGGCTGTCTGGAGCAC+GGG + chr1.2:25510748-25510767 MS.gene053322:intron 65.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 25508382 25512412 25508382 ID=MS.gene053322
chr1.2 mRNA 25508382 25512412 25508382 ID=MS.gene053322.t1;Parent=MS.gene053322
chr1.2 exon 25508382 25508742 25508382 ID=MS.gene053322.t1.exon1;Parent=MS.gene053322.t1
chr1.2 CDS 25508382 25508742 25508382 ID=cds.MS.gene053322.t1;Parent=MS.gene053322.t1
chr1.2 exon 25509326 25509451 25509326 ID=MS.gene053322.t1.exon2;Parent=MS.gene053322.t1
chr1.2 CDS 25509326 25509451 25509326 ID=cds.MS.gene053322.t1;Parent=MS.gene053322.t1
chr1.2 exon 25510449 25510556 25510449 ID=MS.gene053322.t1.exon3;Parent=MS.gene053322.t1
chr1.2 CDS 25510449 25510556 25510449 ID=cds.MS.gene053322.t1;Parent=MS.gene053322.t1
chr1.2 exon 25512003 25512224 25512003 ID=MS.gene053322.t1.exon4;Parent=MS.gene053322.t1
chr1.2 CDS 25512003 25512224 25512003 ID=cds.MS.gene053322.t1;Parent=MS.gene053322.t1
chr1.2 exon 25512330 25512412 25512330 ID=MS.gene053322.t1.exon5;Parent=MS.gene053322.t1
chr1.2 CDS 25512330 25512412 25512330 ID=cds.MS.gene053322.t1;Parent=MS.gene053322.t1
Gene Sequence

>MS.gene053322

ATGGGACTTTATTACCGGAAACTCAAATTGAATATCGATGAATCAGAGCCGTTGAGGTACTACCACTGCAAGGACAAGACTTGCAAAATTGAAAATAGGTATTGTGTGAGCTTCTTCGGGAATCAAAAATGTATCTGTAGAAAATTATTGAACAAAGAAAGTTTCATAAATTCCCTTAAAGGAATTGAAGAAAGCGGTTTTGTCAAGCAAACTTCAACTTCTATCGTTTCTGACGATCTTTATGTCTTGGCGAATGAAGTTGGAACAAGCTTAAATCTTTGTCAGAAGCATGGAGTCAATGACATTGATACTATTGATAAACGAACCGTTAATATCAGCAAGAAAGAGGCATGTTTTCTAAGTATGTACATCATATATATGTACTTTCCGTTGATTATTCTCTCTGTCTCTCTAATTCTTTAATCTATGCTTTGAATAGTTAATTGATATTCTAAAGTTATCTTTGGTCTCAAAGACTCCTTTGACAGACTTTATCTTTAAAAAGGAACAGTTTGTTGGTAATTTAGACCCAAGAAACCGGTCGGAATTTTGGATTCGAGAGGTAGATGAATCATCTGATGAAATTAATGACAAGATGGTCGTGAAAGTACTGAGGAGAAAATCAAATGAACAAATTCTGTTTCTTGAGGCGCAAGATGATTTTATCGACTTTGTTTTTAGTTTTCTAACCTTCCCCTTGGGAGGAGTGTTGTATATGCTTCAAGGATTCTCTTTGTTAAGCTGCATTGATAATTTATACAAAAGCATGACTGAGTTGAGTTCGGACGGATGCTTAATTTCAGAAAAACTAACTAAACCACCGATTCCTATGCAATTTGAACTCATGAACCAAATATTGCCGATAGATACCAAATATAAGGATTATTATACACAATATAAATTTATTGATCCTAAATCCCCTATTTCTGGAGGATATGTCAAAGGACCGATAACCTTCATCGTGACAGACGACATGGCAGTGACTCCATTGTCATCTATTGCCGTTGTTTCGTATCTAGAAAGAATGAAGGTCCCCTTTAATGATGTGGAGGAAAGGGTCATCAGAATTGGTAGGAAAGAGGTAAGGCAGTGCATGAAATGAAACCTAGTATTACTAAATGTGATTGTTTTTCTACCAATAGGGTGGTTGGAACACTTTTATACACCATTGAATTTATTAAAAAAATTACCAAATGGGTGGTTTTGTATTGTAATCGCTTTTTTTTGTCAACTAGTTTAATGATTAGAATTTAATTTTTAAGATGAATAAATGTGATGTTTGTGATTCAAATCTTGGCCACTGTATATCATGATTTAGTAGAATACGTTTTTATTTTGGTGTCACATAATCAAATTTTAGTTGCCGATATGTTTCGTTTGCGGTTAAAGTCTCAATCTTTCAAATAAGTTGAAAAATTAATCTCAATGTTGGTTCATATCAAAAGGAAAGAGTTTTAACTCTGACGTGTTGTGGTATTTTACGTGTTTAAGATTTTAATTTTTGAATTGTTGATATTGGAGCGCGTATTCTGCGCTATTTTCCTTTATTTGGTAGTTGAATGTTGTTATTACCTTCTTTATTCTATATAAATTGGTTTTATTTTTTTACACATTTTGTGCTATGAATAGTTGATTTAATATATCATTTTAATTTTTCAAAAAAAAAAAAATGGTGGAATCACAATAATGATAATATTTATTTAACTTTATGATATAATTTTCATTTATCTATTTTCCTCAAAAAAATAAAAAAAAAATAAATATTTGAAGGGTGGTGGGTGGACAATAACATAATTTGCGTAGAAGCAAATAAGATTGGGTTGGATAAGAAGAAAAAAGAGAAGAAAGAACAATGGCGGGTTCTGCAGTATCACTTGGAAACACCTTCGTTTTCGCTTCTATGCGCTCAATCTCAACATCAACCAACACTCTCAAACCCTCTTCATTCTCACCCCGTAACTATCTAACTAACTTAACTAACTTCTTCTCAATTTCAATTTGCTTTCTTATGTTTTGCTGAATCTGTTTTATCAATAATATAATTCATTGCAATTTTTGTGATTTCAGAATTAGGGTTCTTGAGTTCTCAGTTAAGTGGTCTCAGAATCTCGTCTCGGACTTCGATTAAATTGCCCTCACCAATTGTTGCTTCTCCTTTTCAACCAATTGTTGCTAGTAAGTTATTGAAACCAATAATCGATATTCACTCTGATTTTGAGCATGTTATGAACTGTGTATAGTGTTTTACTCACATTTTCATTTTAAAATTTAACAATTGTTCCGTTCTTTTTTATTTTTATTGTCATATTTTTGATTAATTTTTTTCCTAATCTAATTGCGATATACAAACAAGCGCGCATTTTGGCGTGCAGGCTGTCTGGAGCACGGGTCTGTTGCTAGTTTACGTACATGGTAACTGACAATGACATGTAAACACTAGTAATAATTTTGGACAAATGTAAATAATAAAATGTTATTGATGTTGTGCCTGTGTTTGACACTGACTTGTGTCATTGCTATAATTTTGTCGATTTCGTGTCATTGCTCTAATTTTAATAAAATGGAAGTACTTACATTTTGTCGATTTTGTGCTAGTGTTGACTCTAACATGTGTTAGACAAGGGACATGTCTTCAAAGTGTCAATGCTACATACTAGTTTGTTTCTTGCAGGAGTAATACTTGTATCATAAGCACTTACTGGACTTATTTTAATGTTATTGAGTTTCTGATAAGTTGTTCCAGTAAACACCGTCTTTATGCAATAATTCCTTGTTTTTTGTAGATGCGTTACATGAGAATGTGATTAAATGATATTTGTTTCAGTCTAAAGTACTATATTAGAGCTAGGGTTTTCTTTGTTGAATCTTGTGTTAAGTGGACAAATTAATAGAAATTGGAAACATCAATAGGGACCTTTTATTTTCATAACAATATGGATAGGGAAGAAATGGCTACCTTTAAGAGACCAACTATGGTTTGTGTACTTTTTTTTTTTTTATTTAAAAAATAACATATTGCTGTTGGTTAATAAATATTTTTCATATTTTATTGCGGACAGAGGAGTTTGGCACTGATATCTACTCCAGCTTTCATCGTTAGAGTGAAAGATAAATACCGTTCCTAGTTTATGTTTGCCTATAGTAATAATTCTTTTTTGTATATAAGAGAATAAGAGAACATGCATAACATGTTGTGGTACGATTGACCTATAACCGAGTTTCTTAAGCACGTAGGTAGAAGTTTATTACATGACCTGTTTGTATGTAACATATGTTAGGAGATGTCAATCCCTTAAATGATTAGTGTTAAACGTGTTGTTAGGGATTCAATATAAGACCTGTTTTCCTTAAATGATTAGTGTTAAACGTGTTGTTAGGGATTCAATATAAGACCTGTTTTTACTGAAGGTCATATGTTATGAGATGTCAGTCCATTAATTAATAAGTTTTTGGCTCTTAGTTAGAGATACCATGGTTTCACCCAAAAAATACACATATTTGGTTATTGCTTGTTGATGCCAAACTACATCATTATTGTTTAAAAGATCCAACTGCAAATCCTGCTTATTATTATTATTGCAAATCAATTTAACTTGGTGTACCTTGGTTTTATTTATTCAGAGAGAGTGTGTCCCTTCACCGGAAAGAAATCAAACAGGGCCAACAAAGTATCCTTTTCAAACCATAAGACAAAGAAACTGCAGTTTGTAAACCTCCAGTACAAGAGAGTTTGGTGGGAAGCTGGGAAGCGTTATGTAAAGCTTCGTTTGTCAACTAAGGCGTTGAAAACCATAGAGAAGAATGGACTTGATGCAGTTGCAAAAAAGGCTGGAATTGATCTCAGTAAGAAATGAGAGTACAAGATTATGATTGTAATTGAGTAAAAGGATGAATCCATGTTCATTAATTTTTGTTGTAGAATTTCTTTTCTTTATGTATTATTTTTAGGGACAGGAGTTGATTCTGACTACGGTCAAAAGCAACTTGCGAGTTTACTATGTCATGAATCTTACAAATGGAAATCTCTTTGA

Protein sequence

>MS.gene053322.t1

MGLYYRKLKLNIDESEPLRYYHCKDKTCKIENRYCVSFFGNQKCICRKLLNKESFINSLKGIEESGFVKQTSTSIVSDDLYVLANEVGTSLNLCQKHGVNDIDTIDKRTVNISKKEACFLRPITFIVTDDMAVTPLSSIAVVSYLERMKVPFNDVEERVIRIELGFLSSQLSGLRISSRTSIKLPSPIVASPFQPIVAKRVCPFTGKKSNRANKVSFSNHKTKKLQFVNLQYKRVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAGIDLRTGVDSDYGQKQLASLLCHESYKWKSL