AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene059029


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene059029.t1 MTR_1g069320 96.591 352 12 0 13 364 141 492 0.0 696
MS.gene059029.t1 MTR_7g099270 73.352 364 97 0 1 364 1 364 0.0 565
MS.gene059029.t1 MTR_1g069325 66.860 344 114 0 21 364 25 368 3.44e-177 496
MS.gene059029.t1 MTR_7g099280 66.667 351 117 0 13 363 58 408 1.91e-175 494
MS.gene059029.t1 MTR_7g099280 66.667 351 117 0 13 363 60 410 2.47e-175 494
MS.gene059029.t1 MTR_7g099280 65.064 312 109 0 13 324 58 369 1.23e-149 427
MS.gene059029.t1 MTR_7g099280 58.974 351 107 1 13 363 68 381 6.17e-145 415
MS.gene059029.t1 MTR_1g069325 57.558 344 95 1 21 364 25 317 1.16e-141 404
MS.gene059029.t1 MTR_7g099280 65.900 261 89 0 13 273 58 318 1.87e-123 360
MS.gene059029.t1 MTR_7g099280 65.737 251 86 0 13 263 58 308 8.47e-119 346
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene059029.t1 AT4G28706 67.236 351 115 0 13 363 50 400 0.0 509
MS.gene059029.t1 AT4G28706 67.236 351 115 0 13 363 52 402 0.0 509
MS.gene059029.t1 AT4G28706 67.330 352 114 1 13 363 52 403 0.0 509
MS.gene059029.t1 AT4G28706 67.330 352 114 1 13 363 52 403 0.0 508
MS.gene059029.t1 AT5G43910 55.114 352 153 2 13 363 16 363 4.04e-139 400
MS.gene059029.t1 AT5G43910 55.806 310 132 2 13 321 16 321 8.87e-121 352
MS.gene059029.t1 AT5G43910 54.887 266 119 1 13 277 16 281 3.39e-103 306
MS.gene059029.t1 AT5G43910 55.725 262 115 1 13 273 16 277 5.67e-103 306
MS.gene059029.t1 AT5G43910 55.725 262 115 1 13 273 16 277 7.89e-103 305

Find 101 sgRNAs with CRISPR-Local

Find 339 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTACGTTGGGTAACCTTAAA+AGG 0.186047 1.2:+52187802 None:intergenic
AAAATTTGTGGCTGTAACTT+TGG 0.249227 1.2:-52187781 MS.gene059029:CDS
GGTGGATGTAGACAATTTAT+TGG 0.254586 1.2:-52187609 MS.gene059029:CDS
GGTGCCGGGGATGCATTTAT+TGG 0.310291 1.2:-52186993 MS.gene059029:CDS
CCAGTCAGTGGCAAAATTAA+AGG 0.324818 1.2:-52187099 MS.gene059029:intron
CAACATAATCAGCTAATTTC+AGG 0.326463 1.2:+52188380 None:intergenic
TTAACCTGCCTTGCTCGTTT+AGG 0.328379 1.2:-52191080 MS.gene059029:CDS
AAACACAAGGCTCGTTTCTA+AGG 0.332845 1.2:-52191054 MS.gene059029:intron
ATCAGTCACCGTCGATTTCT+TGG 0.344948 1.2:-52191501 MS.gene059029:CDS
AACTCGATTCTGAAAGATCT+TGG 0.350613 1.2:+52189238 None:intergenic
CTGGAAAATCTACTGAATAA+AGG 0.358595 1.2:+52186458 None:intergenic
AAATTTGTGGCTGTAACTTT+GGG 0.365260 1.2:-52187780 MS.gene059029:CDS
TTTATTGGATCTGTGATCTA+TGG 0.367712 1.2:-52186978 MS.gene059029:intron
TCATCTAATATGCCCCTGCC+TGG 0.371108 1.2:+52190610 None:intergenic
GAAGGAATAGGAACGGTTAT+CGG 0.380834 1.2:-52187074 MS.gene059029:CDS
ACTCGATTCTGAAAGATCTT+GGG 0.390681 1.2:+52189239 None:intergenic
GAAAGATCTTGGGGTATCAT+TGG 0.390891 1.2:+52189249 None:intergenic
ATCGAGTTTGTTATCTGCAT+TGG 0.395357 1.2:-52189223 MS.gene059029:CDS
CCTTTCTGCATCAATTAAGA+TGG 0.396655 1.2:+52188426 None:intergenic
GGTGCCAAGTGCAGAGATCT+AGG 0.414691 1.2:-52186525 MS.gene059029:CDS
AAGGCAGGTTAAAGCATTGC+CGG 0.419139 1.2:+52191091 None:intergenic
AATCAGAACAACCACTTTGA+AGG 0.420228 1.2:-52191444 MS.gene059029:intron
AGCTGAGAGCATTCCGCCCT+CGG 0.443652 1.2:-52187033 MS.gene059029:CDS
GGTATCATTGGAGGATATCC+AGG 0.445056 1.2:+52189261 None:intergenic
GTGCTTATGCAGGTGGGTTG+TGG 0.457341 1.2:-52191524 MS.gene059029:CDS
AAATTAAAGGCAGAAGGAAT+AGG 0.458558 1.2:-52187086 MS.gene059029:CDS
GTTACCCAACGTAAAATTTG+TGG 0.460980 1.2:-52187793 MS.gene059029:CDS
AGGCGTGGGTCTGCGCGGTA+TGG 0.464792 1.2:+52186486 None:intergenic
CTTGTTGATACCACTGGTGC+CGG 0.467767 1.2:-52187008 MS.gene059029:CDS
TCCACAATAATGTACGTAAA+CGG 0.467777 1.2:+52190074 None:intergenic
AAGGAATAGGAACGGTTATC+GGG 0.482979 1.2:-52187073 MS.gene059029:CDS
TTGCATTACCGATGATATGC+AGG 0.482989 1.2:+52187544 None:intergenic
AGACAATTTATTGGAATCGC+TGG 0.490300 1.2:-52187600 MS.gene059029:CDS
TTGCGGATGACAGCCCAGGC+AGG 0.492500 1.2:-52190624 MS.gene059029:CDS
TTGTTGATACCACTGGTGCC+GGG 0.498753 1.2:-52187007 MS.gene059029:CDS
TGCGGATGACAGCCCAGGCA+GGG 0.505235 1.2:-52190623 MS.gene059029:CDS
TTATTTGCAGGTATCTAAAG+AGG 0.508769 1.2:-52190105 MS.gene059029:intron
TAGACCTAAACGAGCAAGGC+AGG 0.509005 1.2:+52191076 None:intergenic
GTTCAAGGTGGTGGTAATGC+CGG 0.514740 1.2:-52191110 MS.gene059029:CDS
TCGGAGCTTGTTGATACCAC+TGG 0.518281 1.2:-52187014 MS.gene059029:CDS
GCGGATGACAGCCCAGGCAG+GGG 0.519058 1.2:-52190622 MS.gene059029:CDS
CATCTAATATGCCCCTGCCT+GGG 0.522457 1.2:+52190611 None:intergenic
TAGATTGCGGATGACAGCCC+AGG 0.525196 1.2:-52190628 MS.gene059029:CDS
GCAAAGGGTAGCATTGTCTC+TGG 0.526457 1.2:+52186800 None:intergenic
CTTTCTGCATCAATTAAGAT+GGG 0.529991 1.2:+52188427 None:intergenic
CTCGTTTAGGTCTAAACACA+AGG 0.531596 1.2:-52191067 MS.gene059029:CDS
TAATTGATGCAGAAAGGCCA+AGG 0.534906 1.2:-52188420 MS.gene059029:CDS
AGATCATCTAACCCTTCCCT+TGG 0.542681 1.2:+52188403 None:intergenic
TGCTCCTAGATCTCTGCACT+TGG 0.543238 1.2:+52186521 None:intergenic
CGAACTTGTATACATACCCC+TGG 0.546807 1.2:-52189279 MS.gene059029:CDS
TCTACTGAATAAAGGACGCT+AGG 0.547805 1.2:+52186466 None:intergenic
ACATACCACATTAGCAGCAA+AGG 0.549212 1.2:+52186784 None:intergenic
AGTTTGTTATCTGCATTGGA+TGG 0.549990 1.2:-52189219 MS.gene059029:CDS
CTCGATTCTGAAAGATCTTG+GGG 0.550007 1.2:+52189240 None:intergenic
GCTGTAACTTTGGGAAAAGA+TGG 0.551573 1.2:-52187771 MS.gene059029:CDS
GGAATCGCTGGAGTTAAGAA+AGG 0.553449 1.2:-52187588 MS.gene059029:CDS
ACCGTTTACGTACATTATTG+TGG 0.557011 1.2:-52190075 MS.gene059029:CDS
CACGCACGTGCTTATGCAGG+TGG 0.558489 1.2:-52191531 MS.gene059029:CDS
CCATCTTAATTGATGCAGAA+AGG 0.560154 1.2:-52188426 MS.gene059029:CDS
AGGATAGAAACAAGCGCTCG+CGG 0.560505 1.2:+52187822 None:intergenic
CATACCACATTAGCAGCAAA+GGG 0.560550 1.2:+52186785 None:intergenic
GCTACCCTTTGCTGCTAATG+TGG 0.565502 1.2:-52186789 MS.gene059029:intron
ACATCCACCTCTTCTGTGGT+AGG 0.565690 1.2:+52187623 None:intergenic
AGATCCAATAAATGCATCCC+CGG 0.570608 1.2:+52186989 None:intergenic
TGAATAAAGGACGCTAGGCG+TGG 0.574504 1.2:+52186471 None:intergenic
GTGGCAAAATTAAAGGCAGA+AGG 0.575500 1.2:-52187092 MS.gene059029:CDS
AGATCTTGGGGTATCATTGG+AGG 0.580008 1.2:+52189252 None:intergenic
ATGCAGAAAGGCCAAGGGAA+GGG 0.586552 1.2:-52188414 MS.gene059029:CDS
AAATGCATCCCCGGCACCAG+TGG 0.595424 1.2:+52186998 None:intergenic
AATTCCAACCTGCATATCAT+CGG 0.597038 1.2:-52187552 MS.gene059029:intron
TGCTCTAGTTGTTGCCCACG+AGG 0.599306 1.2:-52189157 MS.gene059029:intron
TTTATAGGTGATAACCTCGT+GGG 0.604370 1.2:+52189143 None:intergenic
GTCTACATCCACCTCTTCTG+TGG 0.609481 1.2:+52187619 None:intergenic
GTGGTATCAACAAGCTCCGA+GGG 0.610523 1.2:+52187017 None:intergenic
TGTTTAGACCTAAACGAGCA+AGG 0.611501 1.2:+52191072 None:intergenic
TATTTGCAGGTATCTAAAGA+GGG 0.612549 1.2:-52190104 MS.gene059029:intron
GAATAAAGGACGCTAGGCGT+GGG 0.613508 1.2:+52186472 None:intergenic
ATTACCGATGATATGCAGGT+TGG 0.615097 1.2:+52187548 None:intergenic
GATGCAGAAAGGCCAAGGGA+AGG 0.616991 1.2:-52188415 MS.gene059029:CDS
GTACACGCACGTGCTTATGC+AGG 0.620326 1.2:-52191534 MS.gene059029:CDS
TTAGATGAGCTACAGACTGA+TGG 0.621642 1.2:-52190595 MS.gene059029:CDS
AGCAAGTCCTACCACAGAAG+AGG 0.623266 1.2:-52187630 MS.gene059029:CDS
TTGCTGACAGGCATGGACAG+AGG 0.624956 1.2:-52187856 MS.gene059029:intron
AAGTCCTACCACAGAAGAGG+TGG 0.625523 1.2:-52187627 MS.gene059029:CDS
ATGCTCAGCTAAGTTTCCAA+AGG 0.628024 1.2:-52188356 MS.gene059029:intron
AAAGGAAGCAACCTTCAAAG+TGG 0.648978 1.2:+52191433 None:intergenic
GTATCATTGGAGGATATCCA+GGG 0.655895 1.2:+52189262 None:intergenic
TGTTGATACCACTGGTGCCG+GGG 0.657221 1.2:-52187006 MS.gene059029:CDS
TGGCTTAGGATAAGCAGCAA+CGG 0.657813 1.2:+52191475 None:intergenic
AAAGGCAGAAGGAATAGGAA+CGG 0.658683 1.2:-52187081 MS.gene059029:CDS
TGAGCTACAGACTGATGGCG+TGG 0.660123 1.2:-52190590 MS.gene059029:CDS
ACGCTAGGCGTGGGTCTGCG+CGG 0.665905 1.2:+52186481 None:intergenic
AATTGATGCAGAAAGGCCAA+GGG 0.667892 1.2:-52188419 MS.gene059029:CDS
CTGCTCGAGAGAAGTGTCAG+TGG 0.668499 1.2:-52187741 MS.gene059029:intron
AACGGTAGCCAAGAAATCGA+CGG 0.675256 1.2:+52191493 None:intergenic
ACGCACGTGCTTATGCAGGT+GGG 0.678588 1.2:-52191530 MS.gene059029:CDS
GTATCAACAAGCTCCGAGGG+CGG 0.694955 1.2:+52187020 None:intergenic
AGTGGTATCAACAAGCTCCG+AGG 0.709683 1.2:+52187016 None:intergenic
GTTATCGGGAAACTATACAT+CGG 0.739368 1.2:-52187059 MS.gene059029:CDS
TATCATTGGAGGATATCCAG+GGG 0.762329 1.2:+52189263 None:intergenic
AGAGATCTAGGAGCACGAAG+CGG 0.771967 1.2:-52186513 MS.gene059029:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATGTAAAATGTTTATATT+TGG - chr1.2:52186682-52186701 MS.gene059029:intron 10.0%
!! TTATTAGTATTAATAAAAGT+TGG + chr1.2:52189005-52189024 None:intergenic 10.0%
!!! AATTATTTAGTTTTAATTTC+TGG - chr1.2:52187023-52187042 MS.gene059029:CDS 10.0%
!!! ATCTAAAATTCAAAAAATTA+GGG + chr1.2:52190036-52190055 None:intergenic 10.0%
!!! ATTTTTTTCAGTAAAAAAAA+TGG + chr1.2:52190069-52190088 None:intergenic 10.0%
!!! TAATACTTTTTTTTTTTTTG+TGG - chr1.2:52187875-52187894 MS.gene059029:intron 10.0%
!!! TATCTAAAATTCAAAAAATT+AGG + chr1.2:52190037-52190056 None:intergenic 10.0%
!! AGAATTAAAATTAATTAGTG+GGG - chr1.2:52187820-52187839 MS.gene059029:CDS 15.0%
!! ATATTGCAAGTAAAATTTAT+AGG + chr1.2:52188890-52188909 None:intergenic 15.0%
!! GAGAATTAAAATTAATTAGT+GGG - chr1.2:52187819-52187838 MS.gene059029:CDS 15.0%
!! GTAAGAAATATATAATACTA+TGG - chr1.2:52189712-52189731 MS.gene059029:intron 15.0%
!! TTGCAATATGTTAATTATAA+GGG - chr1.2:52188901-52188920 MS.gene059029:intron 15.0%
!!! ATCTTACATAATTGATATTT+TGG + chr1.2:52190723-52190742 None:intergenic 15.0%
!!! TAATTAATTTTAATTCTCGA+TGG + chr1.2:52187817-52187836 None:intergenic 15.0%
!!! TTTGTTATATTTTTCTCTTA+TGG - chr1.2:52191072-52191091 MS.gene059029:CDS 15.0%
!! AAGTATTAATAAAACAGTAG+AGG + chr1.2:52187863-52187882 None:intergenic 20.0%
!! AATCGAAATGTAGTTAATTA+AGG - chr1.2:52187768-52187787 MS.gene059029:CDS 20.0%
!! ATGATCTAAATTTCAAAAGA+GGG - chr1.2:52188032-52188051 MS.gene059029:intron 20.0%
!! ATGTTTATTTGATAAAATCC+TGG + chr1.2:52188954-52188973 None:intergenic 20.0%
!! CGAGAATTAAAATTAATTAG+TGG - chr1.2:52187818-52187837 MS.gene059029:CDS 20.0%
!! CTTGCAATATGTTAATTATA+AGG - chr1.2:52188900-52188919 MS.gene059029:intron 20.0%
!! GTATATTAAAACATAGAGAA+TGG + chr1.2:52190603-52190622 None:intergenic 20.0%
!!! AAAAAGCTTATGCATTTTAA+TGG - chr1.2:52191455-52191474 MS.gene059029:CDS 20.0%
!!! AAAAGCTTATGCATTTTAAT+GGG - chr1.2:52191456-52191475 MS.gene059029:CDS 20.0%
!!! AAATTTGGTTTATTGCATTT+TGG - chr1.2:52187522-52187541 MS.gene059029:intron 20.0%
!!! ATATTTAATTGATAACCCTT+GGG + chr1.2:52187739-52187758 None:intergenic 20.0%
!!! TATTATGCATTGTAATTTTC+AGG - chr1.2:52186883-52186902 MS.gene059029:intron 20.0%
!!! TTATTTTCTTTTGCTTGTAA+AGG - chr1.2:52189474-52189493 MS.gene059029:intron 20.0%
!!! TTTGATTTCTAAATATGACT+GGG + chr1.2:52188927-52188946 None:intergenic 20.0%
!!! TTTTTGCATAATAAACTCAA+GGG + chr1.2:52189425-52189444 None:intergenic 20.0%
! AAAGAAAAAGAACGAATGTT+AGG + chr1.2:52189217-52189236 None:intergenic 25.0%
! AAATGATTCATAAAACACTC+TGG + chr1.2:52189376-52189395 None:intergenic 25.0%
! AAATTATACTTCGAATCAGT+TGG + chr1.2:52187716-52187735 None:intergenic 25.0%
! AAGAAAAAGAACGAATGTTA+GGG + chr1.2:52189216-52189235 None:intergenic 25.0%
! AATATGCTGAAAACAACTTA+TGG - chr1.2:52187210-52187229 MS.gene059029:intron 25.0%
! AATTCTTCACCAAAAACATA+AGG + chr1.2:52189316-52189335 None:intergenic 25.0%
! AATTTATGTATTGAACCTGT+TGG - chr1.2:52191412-52191431 MS.gene059029:intron 25.0%
! ACTCATATAGGATATATTGT+AGG + chr1.2:52188621-52188640 None:intergenic 25.0%
! ACTTGAATCATTCTAAGTTA+AGG - chr1.2:52188308-52188327 MS.gene059029:intron 25.0%
! ATATGATGTCTTAAATGACT+TGG - chr1.2:52189841-52189860 MS.gene059029:intron 25.0%
! CATCATTATACACTAACATA+TGG + chr1.2:52191302-52191321 None:intergenic 25.0%
! CATGATCTAAATTTCAAAAG+AGG - chr1.2:52188031-52188050 MS.gene059029:intron 25.0%
! CTTGAATCATTCTAAGTTAA+GGG - chr1.2:52188309-52188328 MS.gene059029:intron 25.0%
! GTGAAGAATTTCAAAATTCT+AGG - chr1.2:52189326-52189345 MS.gene059029:intron 25.0%
! TCTAGGAAATTGAAATTACA+GGG - chr1.2:52189343-52189362 MS.gene059029:intron 25.0%
! TGATCTAAATTTCAAAAGAG+GGG - chr1.2:52188033-52188052 MS.gene059029:intron 25.0%
! TTATACTAAATCGCATATCA+CGG - chr1.2:52188473-52188492 MS.gene059029:intron 25.0%
! TTGAATCATTCTAAGTTAAG+GGG - chr1.2:52188310-52188329 MS.gene059029:intron 25.0%
! TTTATAAGCACTTAAACAAG+TGG + chr1.2:52187087-52187106 None:intergenic 25.0%
!! AAGCTATATTCTTTTTGTTG+TGG - chr1.2:52189945-52189964 MS.gene059029:intron 25.0%
!! ACAACTTAACATGTATTTTG+GGG + chr1.2:52189901-52189920 None:intergenic 25.0%
!! ATGTAATCTAAAATCCATAG+TGG - chr1.2:52189138-52189157 MS.gene059029:intron 25.0%
!! CACAACTTAACATGTATTTT+GGG + chr1.2:52189902-52189921 None:intergenic 25.0%
!! CATATTTAATTGATAACCCT+TGG + chr1.2:52187740-52187759 None:intergenic 25.0%
!! CTTTGATTTCTAAATATGAC+TGG + chr1.2:52188928-52188947 None:intergenic 25.0%
!! GTTTTTGCATAATAAACTCA+AGG + chr1.2:52189426-52189445 None:intergenic 25.0%
!! TACATCTTTTATTGTGGTAA+TGG - chr1.2:52187449-52187468 MS.gene059029:intron 25.0%
!! TCACAACTTAACATGTATTT+TGG + chr1.2:52189903-52189922 None:intergenic 25.0%
!! TTCTAGGAAATTGAAATTAC+AGG - chr1.2:52189342-52189361 MS.gene059029:intron 25.0%
!! TTTAATCATTTGACCTTTTC+TGG - chr1.2:52190361-52190380 MS.gene059029:intron 25.0%
!!! AAAGCTTATGCATTTTAATG+GGG - chr1.2:52191457-52191476 MS.gene059029:CDS 25.0%
!!! AAGAAAAGACTAGTTTTTTG+TGG - chr1.2:52189869-52189888 MS.gene059029:intron 25.0%
!!! AAGGGAATGTAATTTTTTTG+AGG + chr1.2:52189407-52189426 None:intergenic 25.0%
!!! AATGGTCATTTTCTTACATA+TGG - chr1.2:52187975-52187994 MS.gene059029:intron 25.0%
!!! AGCTATATTCTTTTTGTTGT+GGG - chr1.2:52189946-52189965 MS.gene059029:intron 25.0%
!!! ATTATTTTTACTCTTCTCTG+TGG - chr1.2:52190087-52190106 MS.gene059029:CDS 25.0%
!!! TATAAAGTGTTGTCAAACAA+AGG + chr1.2:52188458-52188477 None:intergenic 25.0%
!!! TTATTTTTACTCTTCTCTGT+GGG - chr1.2:52190088-52190107 MS.gene059029:CDS 25.0%
AAAAACAATGCATTCACCTT+TGG + chr1.2:52189678-52189697 None:intergenic 30.0%
AAAATACTGAGATTTGAGAG+TGG + chr1.2:52187679-52187698 None:intergenic 30.0%
AAAATTAATTAGTGGGGTTC+TGG - chr1.2:52187826-52187845 MS.gene059029:CDS 30.0%
AAAATTTGTGGCTGTAACTT+TGG - chr1.2:52190234-52190253 MS.gene059029:intron 30.0%
AAATTAAAGGCAGAAGGAAT+AGG - chr1.2:52190929-52190948 MS.gene059029:intron 30.0%
AAATTTGTGGCTGTAACTTT+GGG - chr1.2:52190235-52190254 MS.gene059029:intron 30.0%
AAGTAGTTAGAATGAGTCAA+AGG + chr1.2:52188703-52188722 None:intergenic 30.0%
AATGCACTTAGCATACATAA+TGG + chr1.2:52189242-52189261 None:intergenic 30.0%
ACAATGGTTTCAAAAAACTC+AGG + chr1.2:52187331-52187350 None:intergenic 30.0%
ACACTGTATTTGTCCAAAAA+AGG + chr1.2:52190656-52190675 None:intergenic 30.0%
AGTAGTTAGAATGAGTCAAA+GGG + chr1.2:52188702-52188721 None:intergenic 30.0%
ATTAAAACATAGAGAATGGC+AGG + chr1.2:52190599-52190618 None:intergenic 30.0%
ATTAAATAAGCAATGTCGAG+AGG + chr1.2:52187006-52187025 None:intergenic 30.0%
ATTAACGTCTAGTAGAGATT+AGG + chr1.2:52190682-52190701 None:intergenic 30.0%
ATTCGAAGTATAATTTCCCA+AGG - chr1.2:52187720-52187739 MS.gene059029:intron 30.0%
CAACATAATCAGCTAATTTC+AGG + chr1.2:52189638-52189657 None:intergenic 30.0%
CACTTAAACAAGTGGTTTAT+CGG + chr1.2:52187079-52187098 None:intergenic 30.0%
CATTTATGCACATGTAAACA+AGG + chr1.2:52189748-52189767 None:intergenic 30.0%
CTATACACACGATACAAATT+AGG + chr1.2:52191382-52191401 None:intergenic 30.0%
CTTTCTGCATCAATTAAGAT+GGG + chr1.2:52189591-52189610 None:intergenic 30.0%
GATCTAAATTTCAAAAGAGG+GGG - chr1.2:52188034-52188053 MS.gene059029:intron 30.0%
GTATGTGTAGATATGATTGT+GGG - chr1.2:52190296-52190315 MS.gene059029:intron 30.0%
TAAATAGAACATTTACTGCC+TGG + chr1.2:52189810-52189829 None:intergenic 30.0%
TAATTCAGTGTTGTCAATTG+TGG - chr1.2:52188370-52188389 MS.gene059029:CDS 30.0%
TATTGTTGCCCATAACTAAA+AGG + chr1.2:52187581-52187600 None:intergenic 30.0%
TATTTGCAGGTATCTAAAGA+GGG - chr1.2:52187911-52187930 MS.gene059029:intron 30.0%
TCCACAATAATGTACGTAAA+CGG + chr1.2:52187944-52187963 None:intergenic 30.0%
TCTTCATGAAGCTTGAAATT+TGG - chr1.2:52187507-52187526 MS.gene059029:intron 30.0%
TTAAAACATAGAGAATGGCA+GGG + chr1.2:52190598-52190617 None:intergenic 30.0%
TTAAATAAGCAATGTCGAGA+GGG + chr1.2:52187005-52187024 None:intergenic 30.0%
TTAGATACCTGCAAATAACA+GGG + chr1.2:52187908-52187927 None:intergenic 30.0%
TTATTTGCAGGTATCTAAAG+AGG - chr1.2:52187910-52187929 MS.gene059029:intron 30.0%
TTCGAAGTATAATTTCCCAA+GGG - chr1.2:52187721-52187740 MS.gene059029:intron 30.0%
TTTAGATACCTGCAAATAAC+AGG + chr1.2:52187909-52187928 None:intergenic 30.0%
TTTATTGGATCTGTGATCTA+TGG - chr1.2:52191037-52191056 MS.gene059029:intron 30.0%
TTTCTCTTATGGTCTTCAAT+AGG - chr1.2:52191083-52191102 MS.gene059029:CDS 30.0%
! ACATATCGTTTTACCTTTTC+TGG - chr1.2:52190007-52190026 MS.gene059029:intron 30.0%
! ACTCTTTTCATAGACTATTG+TGG - chr1.2:52187174-52187193 MS.gene059029:intron 30.0%
! ATAAGTTTGTTTGAGGTTAG+AGG + chr1.2:52191340-52191359 None:intergenic 30.0%
! ATTTAGAAATCAAAGCATCC+AGG - chr1.2:52188933-52188952 MS.gene059029:intron 30.0%
! GTGCATTTTACTAATGTGTT+TGG - chr1.2:52187357-52187376 MS.gene059029:intron 30.0%
! GTTGTTCTGATTTTATCATC+TGG + chr1.2:52186563-52186582 None:intergenic 30.0%
! TAACTACATTTCGATTTGTC+TGG + chr1.2:52187764-52187783 None:intergenic 30.0%
! TTTTCTTTTGCTTGTAAAGG+AGG - chr1.2:52189477-52189496 MS.gene059029:intron 30.0%
!! CATCTGCTTTTAATGTAAAC+AGG - chr1.2:52190337-52190356 MS.gene059029:intron 30.0%
!! CTGGAAGTATTTAACAGTTT+AGG - chr1.2:52187042-52187061 MS.gene059029:CDS 30.0%
!! GCAAGCATTGTATATTTTGA+CGG - chr1.2:52188820-52188839 MS.gene059029:intron 30.0%
!! TATTTTTACTCTTCTCTGTG+GGG - chr1.2:52190089-52190108 MS.gene059029:CDS 30.0%
!! TGCATTTGATGATGCTTAAA+AGG + chr1.2:52190122-52190141 None:intergenic 30.0%
!!! CAAGCATTGTATATTTTGAC+GGG - chr1.2:52188821-52188840 MS.gene059029:intron 30.0%
!!! CATAATTGATATTTTGGCTC+AGG + chr1.2:52190717-52190736 None:intergenic 30.0%
!!! CATTGTAATTTTCAGGTTCA+AGG - chr1.2:52186890-52186909 MS.gene059029:intron 30.0%
!!! CTACAATGTTTGACCTTTTT+TGG - chr1.2:52190640-52190659 MS.gene059029:intron 30.0%
!!! CTCATTCTAACTACTTTTTC+AGG - chr1.2:52188707-52188726 MS.gene059029:intron 30.0%
AAAATAAAAGAGCTTCACGG+AGG - chr1.2:52189513-52189532 MS.gene059029:intron 35.0%
AAAATTAGGGCAACCAGAAA+AGG + chr1.2:52190023-52190042 None:intergenic 35.0%
AAATAAAAGAGCTTCACGGA+GGG - chr1.2:52189514-52189533 MS.gene059029:intron 35.0%
AAGAAGGGTCATACTCATAT+AGG + chr1.2:52188633-52188652 None:intergenic 35.0%
AATAAAACAGTAGAGGCCAT+TGG + chr1.2:52187856-52187875 None:intergenic 35.0%
AATAGCCTCTTGCAATTTCA+AGG - chr1.2:52188592-52188611 MS.gene059029:intron 35.0%
AATCAGAACAACCACTTTGA+AGG - chr1.2:52186571-52186590 MS.gene059029:intron 35.0%
AATGCGATGCATAAATTGGA+AGG - chr1.2:52188170-52188189 MS.gene059029:intron 35.0%
ACATCAGTGTTGTCAAATAG+TGG + chr1.2:52188543-52188562 None:intergenic 35.0%
ACCGTTTACGTACATTATTG+TGG - chr1.2:52187940-52187959 MS.gene059029:intron 35.0%
ACTATCTCATGTTCAACCAT+TGG + chr1.2:52189065-52189084 None:intergenic 35.0%
AGACAATTTATTGGAATCGC+TGG - chr1.2:52190415-52190434 MS.gene059029:intron 35.0%
ATTTATAGGTGATAACCTCG+TGG + chr1.2:52188876-52188895 None:intergenic 35.0%
CCATCTTAATTGATGCAGAA+AGG - chr1.2:52189589-52189608 MS.gene059029:intron 35.0%
CCTTTCTGCATCAATTAAGA+TGG + chr1.2:52189592-52189611 None:intergenic 35.0%
CTGCTAATGTGGTATGTTAA+TGG - chr1.2:52191237-52191256 MS.gene059029:intron 35.0%
CTGCTTGTAGACCATAAAAA+TGG + chr1.2:52190561-52190580 None:intergenic 35.0%
GATTCATAAAACACTCTGGT+TGG + chr1.2:52189372-52189391 None:intergenic 35.0%
GGGAAAATAAAAGAGCTTCA+CGG - chr1.2:52189510-52189529 MS.gene059029:intron 35.0%
GGGTGAAAAAAAGAAACAAC+AGG + chr1.2:52189196-52189215 None:intergenic 35.0%
GGTAAAACGATATGTACCAT+TGG + chr1.2:52190002-52190021 None:intergenic 35.0%
GGTATGTGTAGATATGATTG+TGG - chr1.2:52190295-52190314 MS.gene059029:intron 35.0%
GGTGGATGTAGACAATTTAT+TGG - chr1.2:52190406-52190425 MS.gene059029:intron 35.0%
GTTACCCAACGTAAAATTTG+TGG - chr1.2:52190222-52190241 MS.gene059029:intron 35.0%
GTTATCGGGAAACTATACAT+CGG - chr1.2:52190956-52190975 MS.gene059029:intron 35.0%
GTTTGGTACTCATTAGATTG+CGG - chr1.2:52187374-52187393 MS.gene059029:intron 35.0%
TAAAATGCACGCATACACAA+TGG + chr1.2:52187347-52187366 None:intergenic 35.0%
TAAATTTCAAAAGAGGGGGA+GGG - chr1.2:52188038-52188057 MS.gene059029:intron 35.0%
TACTATCTTGACTTCTTCTC+TGG - chr1.2:52188001-52188020 MS.gene059029:intron 35.0%
TATACTTCGAATCAGTTGGT+GGG + chr1.2:52187712-52187731 None:intergenic 35.0%
TCACACTTTATCGTCTAAGT+CGG + chr1.2:52189096-52189115 None:intergenic 35.0%
TGAAGATCTTCAAGCATTTC+TGG - chr1.2:52188256-52188275 MS.gene059029:intron 35.0%
TGTGCAAAGATGATAAAGAC+AGG + chr1.2:52188118-52188137 None:intergenic 35.0%
TTACGTTGGGTAACCTTAAA+AGG + chr1.2:52190216-52190235 None:intergenic 35.0%
TTATACTTCGAATCAGTTGG+TGG + chr1.2:52187713-52187732 None:intergenic 35.0%
TTGTGGACAATGAAACGTAA+TGG - chr1.2:52187957-52187976 MS.gene059029:intron 35.0%
TTTATAGGTGATAACCTCGT+GGG + chr1.2:52188875-52188894 None:intergenic 35.0%
! AACTCGATTCTGAAAGATCT+TGG + chr1.2:52188780-52188799 None:intergenic 35.0%
! ACAGCCACAAATTTTACGTT+GGG + chr1.2:52190229-52190248 None:intergenic 35.0%
! ACTCGATTCTGAAAGATCTT+GGG + chr1.2:52188779-52188798 None:intergenic 35.0%
! AGATACTTGTGAGACTGTTT+TGG + chr1.2:52187265-52187284 None:intergenic 35.0%
! ATCTTGTATTTTTCCAGTGC+AGG - chr1.2:52189548-52189567 MS.gene059029:intron 35.0%
! CGTGGATACATCTTTTATTG+TGG - chr1.2:52187443-52187462 MS.gene059029:intron 35.0%
! TACAGCCACAAATTTTACGT+TGG + chr1.2:52190230-52190249 None:intergenic 35.0%
! TAGGATACATTTGAAGTGCT+TGG + chr1.2:52191363-52191382 None:intergenic 35.0%
! TCAAAAAACTCAGGCTTGTT+TGG + chr1.2:52187322-52187341 None:intergenic 35.0%
! TGCTTGGATAAGTTTGTTTG+AGG + chr1.2:52191347-52191366 None:intergenic 35.0%
! TTTCGCTTGCCTTATGTTTT+TGG - chr1.2:52189304-52189323 MS.gene059029:intron 35.0%
! TTTTGCTTGTAAAGGAGGTT+GGG - chr1.2:52189482-52189501 MS.gene059029:intron 35.0%
!! AAGCCACTCTTTAAAGCATT+TGG + chr1.2:52186862-52186881 None:intergenic 35.0%
!! AGTTTGTTATCTGCATTGGA+TGG - chr1.2:52188796-52188815 MS.gene059029:intron 35.0%
!! ATCGAGTTTGTTATCTGCAT+TGG - chr1.2:52188792-52188811 MS.gene059029:intron 35.0%
!! CATTGATTCTACTTGATGCT+AGG + chr1.2:52186771-52186790 None:intergenic 35.0%
!! CTGATTTTATCATCTGGCTT+AGG + chr1.2:52186557-52186576 None:intergenic 35.0%
!! CTTTAATTTTGCCACTGACT+GGG + chr1.2:52190918-52190937 None:intergenic 35.0%
!! GAGACTAATTGTTCAAGTTG+TGG - chr1.2:52188569-52188588 MS.gene059029:intron 35.0%
!! TGCATTTTAATGGGGATTTC+AGG - chr1.2:52191465-52191484 MS.gene059029:CDS 35.0%
!! TGCTCATGCCTTTTAGTTAT+GGG - chr1.2:52187570-52187589 MS.gene059029:CDS 35.0%
!! TTGCTCATGCCTTTTAGTTA+TGG - chr1.2:52187569-52187588 MS.gene059029:CDS 35.0%
!!! ACTTTTTGTTTCTATACGCC+AGG - chr1.2:52189789-52189808 MS.gene059029:intron 35.0%
!!! CGCTTGTTTCTATCCTTTTA+AGG - chr1.2:52190200-52190219 MS.gene059029:intron 35.0%
!!! TAACATGTATTTTGGGGCAA+GGG + chr1.2:52189895-52189914 None:intergenic 35.0%
!!! TGTAATTTTCAGGTTCAAGG+TGG - chr1.2:52186893-52186912 MS.gene059029:intron 35.0%
!!! TTAACATGTATTTTGGGGCA+AGG + chr1.2:52189896-52189915 None:intergenic 35.0%
AAACACAAGGCTCGTTTCTA+AGG - chr1.2:52186961-52186980 MS.gene059029:intron 40.0%
AAAGGAAGCAACCTTCAAAG+TGG + chr1.2:52186585-52186604 None:intergenic 40.0%
AAAGGCAGAAGGAATAGGAA+CGG - chr1.2:52190934-52190953 MS.gene059029:intron 40.0%
AAATTTCAAAAGAGGGGGAG+GGG - chr1.2:52188039-52188058 MS.gene059029:intron 40.0%
AAGGAATAGGAACGGTTATC+GGG - chr1.2:52190942-52190961 MS.gene059029:intron 40.0%
AATTGATGCAGAAAGGCCAA+GGG - chr1.2:52189596-52189615 MS.gene059029:intron 40.0%
ACATACCACATTAGCAGCAA+AGG + chr1.2:52191234-52191253 None:intergenic 40.0%
ACCTAACTCATATCTCCAAC+AGG + chr1.2:52191430-52191449 None:intergenic 40.0%
ACCTGTTGGAGATATGAGTT+AGG - chr1.2:52191426-52191445 MS.gene059029:intron 40.0%
AGATCCAATAAATGCATCCC+CGG + chr1.2:52191029-52191048 None:intergenic 40.0%
ATGCTCAGCTAAGTTTCCAA+AGG - chr1.2:52189659-52189678 MS.gene059029:intron 40.0%
ATTACCGATGATATGCAGGT+TGG + chr1.2:52190470-52190489 None:intergenic 40.0%
CAAGAAATCAGGTACAGACT+TGG + chr1.2:52187651-52187670 None:intergenic 40.0%
CAATTTATGCATCGCATTGC+TGG + chr1.2:52188168-52188187 None:intergenic 40.0%
CAGCAATGCGATGCATAAAT+TGG - chr1.2:52188166-52188185 MS.gene059029:intron 40.0%
CATACCACATTAGCAGCAAA+GGG + chr1.2:52191233-52191252 None:intergenic 40.0%
CATGTTCAACCATTGGCATT+GGG + chr1.2:52189058-52189077 None:intergenic 40.0%
CATTCCAAATCTTTCTGCCA+AGG - chr1.2:52190535-52190554 MS.gene059029:intron 40.0%
CCAATTTGTGTCTTTCGCAA+AGG - chr1.2:52191109-52191128 MS.gene059029:CDS 40.0%
CCAGTCAGTGGCAAAATTAA+AGG - chr1.2:52190916-52190935 MS.gene059029:intron 40.0%
CCTTTGCGAAAGACACAAAT+TGG + chr1.2:52191112-52191131 None:intergenic 40.0%
CTAAATTTCAAAAGAGGGGG+AGG - chr1.2:52188037-52188056 MS.gene059029:intron 40.0%
CTCGTTTAGGTCTAAACACA+AGG - chr1.2:52186948-52186967 MS.gene059029:intron 40.0%
CTTGGCAGAAAGATTTGGAA+TGG + chr1.2:52190537-52190556 None:intergenic 40.0%
GAAGGAATAGGAACGGTTAT+CGG - chr1.2:52190941-52190960 MS.gene059029:intron 40.0%
GATAACCTTTCTTTGCTGAC+AGG - chr1.2:52190147-52190166 MS.gene059029:intron 40.0%
GATCCATACTTTATAGCACC+AGG - chr1.2:52188673-52188692 MS.gene059029:intron 40.0%
GCATCAAGTAGAATCAATGC+TGG - chr1.2:52186772-52186791 MS.gene059029:intron 40.0%
GCTGCTAGAATTGATTATGG+AGG + chr1.2:52186838-52186857 None:intergenic 40.0%
GGAGCTGCTAGAATTGATTA+TGG + chr1.2:52186841-52186860 None:intergenic 40.0%
GTAGACCATAAAAATGGCCT+TGG + chr1.2:52190555-52190574 None:intergenic 40.0%
GTATCATTGGAGGATATCCA+GGG + chr1.2:52188756-52188775 None:intergenic 40.0%
GTGGCAAAATTAAAGGCAGA+AGG - chr1.2:52190923-52190942 MS.gene059029:intron 40.0%
TAATTGATGCAGAAAGGCCA+AGG - chr1.2:52189595-52189614 MS.gene059029:intron 40.0%
TATCATTGGAGGATATCCAG+GGG + chr1.2:52188755-52188774 None:intergenic 40.0%
TCATGTTCAACCATTGGCAT+TGG + chr1.2:52189059-52189078 None:intergenic 40.0%
TGCACTTGCAATATCCACTA+TGG + chr1.2:52189155-52189174 None:intergenic 40.0%
TGTTTAGACCTAAACGAGCA+AGG + chr1.2:52186946-52186965 None:intergenic 40.0%
TTAGATGAGCTACAGACTGA+TGG - chr1.2:52187420-52187439 MS.gene059029:intron 40.0%
TTGCATTACCGATGATATGC+AGG + chr1.2:52190474-52190493 None:intergenic 40.0%
TTGCGAAAGACACAAATTGG+TGG + chr1.2:52191109-52191128 None:intergenic 40.0%
TTGTGGATCGCAAGAAATAG+CGG - chr1.2:52188387-52188406 MS.gene059029:CDS 40.0%
TTTATGACTGCTGACACCAA+TGG - chr1.2:52189983-52190002 MS.gene059029:intron 40.0%
! ATACTTCGAATCAGTTGGTG+GGG + chr1.2:52187711-52187730 None:intergenic 40.0%
! CTCGATTCTGAAAGATCTTG+GGG + chr1.2:52188778-52188797 None:intergenic 40.0%
! CTTTTGCTTGTAAAGGAGGT+TGG - chr1.2:52189481-52189500 MS.gene059029:intron 40.0%
! GAAAGATCTTGGGGTATCAT+TGG + chr1.2:52188769-52188788 None:intergenic 40.0%
! GCTGTAACTTTGGGAAAAGA+TGG - chr1.2:52190244-52190263 MS.gene059029:intron 40.0%
! TTAACAGTTTAGGCGCTGTT+TGG - chr1.2:52187052-52187071 MS.gene059029:CDS 40.0%
! TTATGCTCCCTGTTATTTGC+AGG - chr1.2:52187898-52187917 MS.gene059029:intron 40.0%
! TTTTAATGGGGATTTCAGGC+AGG - chr1.2:52191469-52191488 MS.gene059029:CDS 40.0%
!! AGTGGTGCTATAGTATAGAG+TGG + chr1.2:52188525-52188544 None:intergenic 40.0%
!! ATCCCTGAAGTTCTAGAAAC+AGG - chr1.2:52190815-52190834 MS.gene059029:intron 40.0%
!! ATCCCTGTTTCTAGAACTTC+AGG + chr1.2:52190821-52190840 None:intergenic 40.0%
!! CAACCTGGTGCTATAAAGTA+TGG + chr1.2:52188679-52188698 None:intergenic 40.0%
!! CCTTTAATTTTGCCACTGAC+TGG + chr1.2:52190919-52190938 None:intergenic 40.0%
!! GCTCCAAATGCTTTAAAGAG+TGG - chr1.2:52186856-52186875 MS.gene059029:intron 40.0%
!! TCCCTGAAGTTCTAGAAACA+GGG - chr1.2:52190816-52190835 MS.gene059029:intron 40.0%
!! TCCCTGTTTCTAGAACTTCA+GGG + chr1.2:52190820-52190839 None:intergenic 40.0%
!!! AATTTTCAGGTTCAAGGTGG+TGG - chr1.2:52186896-52186915 MS.gene059029:intron 40.0%
!!! TTCTGCCAAGGCCATTTTTA+TGG - chr1.2:52190547-52190566 MS.gene059029:intron 40.0%
AAAGTATGGATCTCCTGCCA+TGG + chr1.2:52188665-52188684 None:intergenic 45.0%
AACGGTAGCCAAGAAATCGA+CGG + chr1.2:52186525-52186544 None:intergenic 45.0%
AATTTCAAAAGAGGGGGAGG+GGG - chr1.2:52188040-52188059 MS.gene059029:intron 45.0%
AGATCATCTAACCCTTCCCT+TGG + chr1.2:52189615-52189634 None:intergenic 45.0%
CAACTCTGCGAGTTATGCTA+AGG + chr1.2:52188338-52188357 None:intergenic 45.0%
CCATGGCAGGATACAAAGAA+GGG + chr1.2:52188648-52188667 None:intergenic 45.0%
CGAACTTGTATACATACCCC+TGG - chr1.2:52188736-52188755 MS.gene059029:intron 45.0%
GAGAAATCAGGTGCAGACTA+GGG + chr1.2:52187629-52187648 None:intergenic 45.0%
GAGTGGATGTGCAAGAAATC+AGG + chr1.2:52187662-52187681 None:intergenic 45.0%
GAGTTAGGTGGATCTAGTTG+AGG - chr1.2:52188069-52188088 MS.gene059029:intron 45.0%
GGAAGCCTTGAAATTGCAAG+AGG + chr1.2:52188600-52188619 None:intergenic 45.0%
GGAATCGCTGGAGTTAAGAA+AGG - chr1.2:52190427-52190446 MS.gene059029:intron 45.0%
GGTACAGACTTGGAGAAATC+AGG + chr1.2:52187641-52187660 None:intergenic 45.0%
GGTATCATTGGAGGATATCC+AGG + chr1.2:52188757-52188776 None:intergenic 45.0%
GTGACACGTACTGAATGACT+TGG - chr1.2:52190792-52190811 MS.gene059029:intron 45.0%
TATGCTGTAGTGCTAGAGTG+CGG - chr1.2:52188426-52188445 MS.gene059029:CDS 45.0%
TGGCTTAGGATAAGCAGCAA+CGG + chr1.2:52186543-52186562 None:intergenic 45.0%
TGTAGACTTGTAGCTCGAAG+TGG + chr1.2:52190625-52190644 None:intergenic 45.0%
TTAACCTGCCTTGCTCGTTT+AGG - chr1.2:52186935-52186954 MS.gene059029:intron 45.0%
TTGTAAAGGAGGTTGGGAGT+GGG - chr1.2:52189488-52189507 MS.gene059029:intron 45.0%
! AGATCTTGGGGTATCATTGG+AGG + chr1.2:52188766-52188785 None:intergenic 45.0%
! ATGGCCTTGGCAGAAAGATT+TGG + chr1.2:52190542-52190561 None:intergenic 45.0%
! GGTGCTATAGTATAGAGTGG+CGG + chr1.2:52188522-52188541 None:intergenic 45.0%
!! AAGGCAGGTTAAAGCATTGC+CGG + chr1.2:52186927-52186946 None:intergenic 45.0%
!! ATCAGTCACCGTCGATTTCT+TGG - chr1.2:52186514-52186533 MS.gene059029:CDS 45.0%
!! AAAACTATTAAAAAAAAAAA+AGG + chr1.2:52186603-52186622 None:intergenic 5.0%
AAGTCCTACCACAGAAGAGG+TGG - chr1.2:52190388-52190407 MS.gene059029:intron 50.0%
ACATCCACCTCTTCTGTGGT+AGG + chr1.2:52190395-52190414 None:intergenic 50.0%
AGCAAGTCCTACCACAGAAG+AGG - chr1.2:52190385-52190404 MS.gene059029:intron 50.0%
AGGATAGAAACAAGCGCTCG+CGG + chr1.2:52190196-52190215 None:intergenic 50.0%
AGTGGTATCAACAAGCTCCG+AGG + chr1.2:52191002-52191021 None:intergenic 50.0%
ATGCAGAAAGGCCAAGGGAA+GGG - chr1.2:52189601-52189620 MS.gene059029:intron 50.0%
ATTTCAAAAGAGGGGGAGGG+GGG - chr1.2:52188041-52188060 MS.gene059029:intron 50.0%
CATCTAATATGCCCCTGCCT+GGG + chr1.2:52187407-52187426 None:intergenic 50.0%
CCATGCCTGTCAGCAAAGAA+AGG + chr1.2:52190155-52190174 None:intergenic 50.0%
CCCTTCTTTGTATCCTGCCA+TGG - chr1.2:52188645-52188664 MS.gene059029:intron 50.0%
CCTTTCTTTGCTGACAGGCA+TGG - chr1.2:52190152-52190171 MS.gene059029:intron 50.0%
CTTGTAAAGGAGGTTGGGAG+TGG - chr1.2:52189487-52189506 MS.gene059029:intron 50.0%
CTTGTTGATACCACTGGTGC+CGG - chr1.2:52191007-52191026 MS.gene059029:intron 50.0%
GAATAAAGGACGCTAGGCGT+GGG + chr1.2:52191546-52191565 None:intergenic 50.0%
GAATGAGTCAAAGGGCAACC+TGG + chr1.2:52188694-52188713 None:intergenic 50.0%
GCAAAGGGTAGCATTGTCTC+TGG + chr1.2:52191218-52191237 None:intergenic 50.0%
GCCATGGCAGGATACAAAGA+AGG + chr1.2:52188649-52188668 None:intergenic 50.0%
GCTACCCTTTGCTGCTAATG+TGG - chr1.2:52191226-52191245 MS.gene059029:intron 50.0%
GCTCATCATCCCAATGCCAA+TGG - chr1.2:52189046-52189065 MS.gene059029:intron 50.0%
GGAGAAATCAGGTGCAGACT+AGG + chr1.2:52187630-52187649 None:intergenic 50.0%
GTCTACATCCACCTCTTCTG+TGG + chr1.2:52190399-52190418 None:intergenic 50.0%
GTGGTATCAACAAGCTCCGA+GGG + chr1.2:52191001-52191020 None:intergenic 50.0%
TAGACCTAAACGAGCAAGGC+AGG + chr1.2:52186942-52186961 None:intergenic 50.0%
TCATCTAATATGCCCCTGCC+TGG + chr1.2:52187408-52187427 None:intergenic 50.0%
TCTTTGTATCCTGCCATGGC+AGG - chr1.2:52188649-52188668 MS.gene059029:intron 50.0%
TGAATAAAGGACGCTAGGCG+TGG + chr1.2:52191547-52191566 None:intergenic 50.0%
TGCTCCTAGATCTCTGCACT+TGG + chr1.2:52191497-52191516 None:intergenic 50.0%
TGTAAAGGAGGTTGGGAGTG+GGG - chr1.2:52189489-52189508 MS.gene059029:intron 50.0%
TTGTTGATACCACTGGTGCC+GGG - chr1.2:52191008-52191027 MS.gene059029:intron 50.0%
! AGAGATCTAGGAGCACGAAG+CGG - chr1.2:52191502-52191521 MS.gene059029:CDS 50.0%
! GTTCAAGGTGGTGGTAATGC+CGG - chr1.2:52186905-52186924 MS.gene059029:intron 50.0%
! TTGGCATTGGGATGATGAGC+TGG + chr1.2:52189046-52189065 None:intergenic 50.0%
! TTTTTCCAGTGCAGGCAGCT+AGG - chr1.2:52189556-52189575 MS.gene059029:intron 50.0%
!! GTAGGACTTGCTGCCAGAAA+AGG + chr1.2:52190377-52190396 None:intergenic 50.0%
!! TCGGAGCTTGTTGATACCAC+TGG - chr1.2:52191001-52191020 MS.gene059029:intron 50.0%
ACGCACGTGCTTATGCAGGT+GGG - chr1.2:52186485-52186504 MS.gene059029:CDS 55.0%
CTGACTGGGTGCAAGGGAAA+AGG + chr1.2:52190904-52190923 None:intergenic 55.0%
GATGCAGAAAGGCCAAGGGA+AGG - chr1.2:52189600-52189619 MS.gene059029:intron 55.0%
GGTGCCAAGTGCAGAGATCT+AGG - chr1.2:52191490-52191509 MS.gene059029:CDS 55.0%
GTAAAGGAGGTTGGGAGTGG+GGG - chr1.2:52189490-52189509 MS.gene059029:intron 55.0%
GTACACGCACGTGCTTATGC+AGG - chr1.2:52186481-52186500 MS.gene059029:CDS 55.0%
GTATCAACAAGCTCCGAGGG+CGG + chr1.2:52190998-52191017 None:intergenic 55.0%
TAGATTGCGGATGACAGCCC+AGG - chr1.2:52187387-52187406 MS.gene059029:intron 55.0%
TATGGATCTCCTGCCATGGC+AGG + chr1.2:52188661-52188680 None:intergenic 55.0%
TGCTCTAGTTGTTGCCCACG+AGG - chr1.2:52188858-52188877 MS.gene059029:intron 55.0%
TTCTTCCTAGCTGCCTGCAC+TGG + chr1.2:52189564-52189583 None:intergenic 55.0%
TTGCTGACAGGCATGGACAG+AGG - chr1.2:52190159-52190178 MS.gene059029:intron 55.0%
TTTCCCTTGCACCCAGTCAG+TGG - chr1.2:52190904-52190923 MS.gene059029:intron 55.0%
! GGTGCCGGGGATGCATTTAT+TGG - chr1.2:52191022-52191041 MS.gene059029:intron 55.0%
! TGAGCTACAGACTGATGGCG+TGG - chr1.2:52187425-52187444 MS.gene059029:intron 55.0%
! TGTTGATACCACTGGTGCCG+GGG - chr1.2:52191009-52191028 MS.gene059029:intron 55.0%
! TTGCCACTGACTGGGTGCAA+GGG + chr1.2:52190910-52190929 None:intergenic 55.0%
! TTTGCCACTGACTGGGTGCA+AGG + chr1.2:52190911-52190930 None:intergenic 55.0%
!! CTGCTCGAGAGAAGTGTCAG+TGG - chr1.2:52190274-52190293 MS.gene059029:intron 55.0%
!! GTGCTTATGCAGGTGGGTTG+TGG - chr1.2:52186491-52186510 MS.gene059029:CDS 55.0%
AAATGCATCCCCGGCACCAG+TGG + chr1.2:52191020-52191039 None:intergenic 60.0%
CACGCACGTGCTTATGCAGG+TGG - chr1.2:52186484-52186503 MS.gene059029:CDS 60.0%
! AGGGGGGAGCATGAGTTAGG+TGG - chr1.2:52188057-52188076 MS.gene059029:intron 60.0%
!! AGCTGAGAGCATTCCGCCCT+CGG - chr1.2:52190982-52191001 MS.gene059029:intron 60.0%
!! GTGGGGTTCTGGACTGCCAA+TGG - chr1.2:52187837-52187856 MS.gene059029:CDS 60.0%
TGCGGATGACAGCCCAGGCA+GGG - chr1.2:52187392-52187411 MS.gene059029:intron 65.0%
TTGCGGATGACAGCCCAGGC+AGG - chr1.2:52187391-52187410 MS.gene059029:intron 65.0%
! GGGAGGGGGGAGCATGAGTT+AGG - chr1.2:52188054-52188073 MS.gene059029:intron 65.0%
ACGCTAGGCGTGGGTCTGCG+CGG + chr1.2:52191537-52191556 None:intergenic 70.0%
AGGCGTGGGTCTGCGCGGTA+TGG + chr1.2:52191532-52191551 None:intergenic 70.0%
GCGGATGACAGCCCAGGCAG+GGG - chr1.2:52187393-52187412 MS.gene059029:intron 70.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 52186467 52191570 52186467 ID=MS.gene059029
chr1.2 mRNA 52186467 52191570 52186467 ID=MS.gene059029.t1;Parent=MS.gene059029
chr1.2 exon 52191445 52191570 52191445 ID=MS.gene059029.t1.exon1;Parent=MS.gene059029.t1
chr1.2 CDS 52191445 52191570 52191445 ID=cds.MS.gene059029.t1;Parent=MS.gene059029.t1
chr1.2 exon 52191055 52191132 52191055 ID=MS.gene059029.t1.exon2;Parent=MS.gene059029.t1
chr1.2 CDS 52191055 52191132 52191055 ID=cds.MS.gene059029.t1;Parent=MS.gene059029.t1
chr1.2 exon 52190573 52190647 52190573 ID=MS.gene059029.t1.exon3;Parent=MS.gene059029.t1
chr1.2 CDS 52190573 52190647 52190573 ID=cds.MS.gene059029.t1;Parent=MS.gene059029.t1
chr1.2 exon 52190065 52190117 52190065 ID=MS.gene059029.t1.exon4;Parent=MS.gene059029.t1
chr1.2 CDS 52190065 52190117 52190065 ID=cds.MS.gene059029.t1;Parent=MS.gene059029.t1
chr1.2 exon 52189158 52189308 52189158 ID=MS.gene059029.t1.exon5;Parent=MS.gene059029.t1
chr1.2 CDS 52189158 52189308 52189158 ID=cds.MS.gene059029.t1;Parent=MS.gene059029.t1
chr1.2 exon 52188357 52188467 52188357 ID=MS.gene059029.t1.exon6;Parent=MS.gene059029.t1
chr1.2 CDS 52188357 52188467 52188357 ID=cds.MS.gene059029.t1;Parent=MS.gene059029.t1
chr1.2 exon 52187742 52187868 52187742 ID=MS.gene059029.t1.exon7;Parent=MS.gene059029.t1
chr1.2 CDS 52187742 52187868 52187742 ID=cds.MS.gene059029.t1;Parent=MS.gene059029.t1
chr1.2 exon 52187553 52187650 52187553 ID=MS.gene059029.t1.exon8;Parent=MS.gene059029.t1
chr1.2 CDS 52187553 52187650 52187553 ID=cds.MS.gene059029.t1;Parent=MS.gene059029.t1
chr1.2 exon 52186979 52187117 52186979 ID=MS.gene059029.t1.exon9;Parent=MS.gene059029.t1
chr1.2 CDS 52186979 52187117 52186979 ID=cds.MS.gene059029.t1;Parent=MS.gene059029.t1
chr1.2 exon 52186790 52186842 52186790 ID=MS.gene059029.t1.exon10;Parent=MS.gene059029.t1
chr1.2 CDS 52186790 52186842 52186790 ID=cds.MS.gene059029.t1;Parent=MS.gene059029.t1
chr1.2 exon 52186467 52186550 52186467 ID=MS.gene059029.t1.exon11;Parent=MS.gene059029.t1
chr1.2 CDS 52186467 52186550 52186467 ID=cds.MS.gene059029.t1;Parent=MS.gene059029.t1
Gene Sequence

>MS.gene059029

ATGTCTCTTTACACGTACACGCACGTGCTTATGCAGGTGGGTTGTGGATCAGTCACCGTCGATTTCTTGGCTACCGTTGCTGCTTATCCTAAGCCAGATGATAAAATCAGAACAACCACTTTGAAGGTTGCTTCCTTTTTTTTTTTTAATAGTTTTAAGCTAGTATAGTGCATATTTGAAATTGATTTTTGAATGAATTGATCTTGTAAAATTAATAATGTAAAATGTTTATATTTGGATATATTTGCGTAAAAAAAAAAAGAAGTGTAAAAAATCACTTTTAGACTCAAAAATTACAAATCCTAGCATCAAGTAGAATCAATGCTGGAAGCAAAGTCAATTCTACTCGAGAACAAATGTCTTTTACACCTCCATAATCAATTCTAGCAGCTCCAAATGCTTTAAAGAGTGGCTTTTATTATGCATTGTAATTTTCAGGTTCAAGGTGGTGGTAATGCCGGCAATGCTTTAACCTGCCTTGCTCGTTTAGGTCTAAACACAAGGCTCGTTTCTAAGGTTATCTATTTTAACTAAACCCTCTCGACATTGCTTATTTAATTATTTAGTTTTAATTTCTGGAAGTATTTAACAGTTTAGGCGCTGTTTGGACCGATAAACCACTTGTTTAAGTGCTTATAAAATAATATTTTATCATATAAGTGCTTATGTATACTTTATTTCTTCAACAAAACATAAAATGAAGTTAAACTCTTTTCATAGACTATTGTGGAAAGTTTATGCGAAATATGCTGAAAACAACTTATGGACAAGTCATGAGTTGTTTTCATAAGCTCTCCAAAACAGTCTCACAAGTATCTATGTCATTAAATAAACTGAATAAAATAAGTCAGTCCAAACAAGCCTGAGTTTTTTGAAACCATTGTGTATGCGTGCATTTTACTAATGTGTTTGGTACTCATTAGATTGCGGATGACAGCCCAGGCAGGGGCATATTAGATGAGCTACAGACTGATGGCGTGGATACATCTTTTATTGTGGTAATGGTTTTAACACTTTTTTCTCTTTAATTGCATTAGCAATCTTCATGAAGCTTGAAATTTGGTTTATTGCATTTTGGTATCTGTAGTAATATTTGAATTTGTTGCTCATGCCTTTTAGTTATGGGCAACAATATAATCATCTGATGAAAGTACATGATCCCTAGTCTGCACCTGATTTCTCCAAGTCTGTACCTGATTTCTTGCACATCCACTCTCAAATCTCAGTATTTTGTTGACACTCCCCACCAACTGATTCGAAGTATAATTTCCCAAGGGTTATCAATTAAATATGACCAGACAAATCGAAATGTAGTTAATTAAGGTTTTATATAGATATGAATTCATTCCATCGAGAATTAAAATTAATTAGTGGGGTTCTGGACTGCCAATGGCCTCTACTGTTTTATTAATACTTTTTTTTTTTTTGTGGTTATGCTCCCTGTTATTTGCAGGTATCTAAAGAGGGAACTTCACCGTTTACGTACATTATTGTGGACAATGAAACGTAATGGTCATTTTCTTACATATGGTTATACTATCTTGACTTCTTCTCTGGATATATTCATGATCTAAATTTCAAAAGAGGGGGAGGGGGGAGCATGAGTTAGGTGGATCTAGTTGAGGATCTGATCATTGCTGTCTTCGTTCCTGTCTTTATCATCTTTGCACACTTCAAAATAGCTAAGACTTGTTTCGACCAGCAATGCGATGCATAAATTGGAAGGAGAAATTGTTTATCATTAAAATGAATAAAACAAAATTATGTGCTATAGTTATTCATATTTATATGAAGATCTTCAAGCATTTCTGGCAATGAAGCTGTTTAACATTTTAATTGTAACTTGAATCATTCTAAGTTAAGGGGAGCCTTAGCATAACTCGCAGAGTTGTTGTCATGTAATTAATTCAGTGTTGTCAATTGTGGATCGCAAGAAATAGCGGTTTGTTCAAATTCTTCTATGCTGTAGTGCTAGAGTGCGGCTATAGCCTTTGTTTGACAACACTTTATACTAAATCGCATATCACGGAACGATATCAGTTTGTTAAAACTCCGCCACTCTATACTATAGCACCACTATTTGACAACACTGATGTAATTAAGAGACTAATTGTTCAAGTTGTGGAATAGCCTCTTGCAATTTCAAGGCTTCCTACAATATATCCTATATGAGTATGACCCTTCTTTGTATCCTGCCATGGCAGGAGATCCATACTTTATAGCACCAGGTTGCCCTTTGACTCATTCTAACTACTTTTTCAGGAAGACTCGAACTTGTATACATACCCCTGGATATCCTCCAATGATACCCCAAGATCTTTCAGAATCGAGTTTGTTATCTGCATTGGATGGAGCAAGCATTGTATATTTTGACGGGAGATTGTATGAAACTGCTCTAGTTGTTGCCCACGAGGTTATCACCTATAAATTTTACTTGCAATATGTTAATTATAAGGGCCCAGTCATATTTAGAAATCAAAGCATCCAGGATTTTATCAAATAAACATATACTTTTATACAATATTTAGTGTAAAGCCAACTTTTATTAATACTAATAATCTCTTATTATAAGAATACCAGCTCATCATCCCAATGCCAATGGTTGAACATGAGATAGTTCATAGTACCGACTTAGACGATAAAGTGTGAAAAGATGATCATATTTTGAAAAATGTAATCTAAAATCCATAGTGGATATTGCAAGTGCATTGATGAGTCAAGCTTTTCCTGTTGTTTCTTTTTTTCACCCTAACATTCGTTCTTTTTCTTTAGCCATTATGTATGCTAAGTGCATTTTTTTATTCAACTTGTAAATCATATAAGAAATTGTTACATGATTTCGCTTGCCTTATGTTTTTGGTGAAGAATTTCAAAATTCTAGGAAATTGAAATTACAGGGTATCCAACCAGAGTGTTTTATGAATCATTTTTTTTAAACCTCAAAAAAATTACATTCCCTTGAGTTTATTATGCAAAAACAGACTCGCTGTCTTTTACTACTTTTCAGTTATTTTCTTTTGCTTGTAAAGGAGGTTGGGAGTGGGGGAAAATAAAAGAGCTTCACGGAGGGAAGTAAACGAAATCTTGTATTTTTCCAGTGCAGGCAGCTAGGAAGAATATACCCATCTTAATTGATGCAGAAAGGCCAAGGGAAGGGTTAGATGATCTCCTGAAATTAGCTGATTATGTTGTATGCTCAGCTAAGTTTCCAAAGGTGAATGCATTGTTTTTATAAAATTGTTGTTGTAAGAAATATATAATACTATGGTTCTCTCACACCTTGTTTACATGTGCATAAATGTTGAATTGATTTTAACAGTTTACTTTTTGTTTCTATACGCCAGGCAGTAAATGTTCTATTTACTGAGCAAAACATATGATGTCTTAAATGACTTGGCATCTAAGAAAAGACTAGTTTTTTGTGGCCCTTGCCCCAAAATACATGTTAAGTTGTGAATATGCTATTTCAATTATCTATAAGCTATATTCTTTTTGTTGTGGGAAAGATATATTGATTTTATGACTGCTGACACCAATGGTACATATCGTTTTACCTTTTCTGGTTGCCCTAATTTTTTGAATTTTAGATAAATATCTGTCCATTTTTTTTACTGAAAAAAATTATTTTTACTCTTCTCTGTGGGGTTGAGTTCCTTTTAAGCATCATCAAATGCACACAAGATAACCTTTCTTTGCTGACAGGCATGGACAGAGGCATCAACTGTTCCGCGAGCGCTTGTTTCTATCCTTTTAAGGTTACCCAACGTAAAATTTGTGGCTGTAACTTTGGGAAAAGATGGTTGTATACTGCTCGAGAGAAGTGTCAGTGGTATGTGTAGATATGATTGTGGGCGTAATCGTTGTATGTTGCATCTGCTTTTAATGTAAACAGGTTTTAATCATTTGACCTTTTCTGGCAGCAAGTCCTACCACAGAAGAGGTGGATGTAGACAATTTATTGGAATCGCTGGAGTTAAGAAAGGATAAGAGTGCATCAATTCCAACCTGCATATCATCGGTAATGCAAATGAAACTCAACTCTTTCTCTATTAAGAATTAGAGTGCATCCATTCCAAATCTTTCTGCCAAGGCCATTTTTATGGTCTACAAGCAGACTAGTGCAGCATTCCCTGCCATTCTCTATGTTTTAATATACCACTTCGAGCTACAAGTCTACAATGTTTGACCTTTTTTGGACAAATACAGTGTTGACCTAATCTCTACTAGACGTTAATTTATATTTTTTTCCTGAGCCAAAATATCAATTATGTAAGATGATGATATGAATGCGTTGCAGAGAAATAAAAATTCTCTAGACACTCATAGTGACACGTACTGAATGACTTGGATCCCTGAAGTTCTAGAAACAGGGATTATAACTTCAATAAAATATCACATGCTTATTTATGTTCTTGATCAACATTTTAGTCATTACCTTTTCCCTTGCACCCAGTCAGTGGCAAAATTAAAGGCAGAAGGAATAGGAACGGTTATCGGGAAACTATACATCGGTACAGCTGAGAGCATTCCGCCCTCGGAGCTTGTTGATACCACTGGTGCCGGGGATGCATTTATTGGATCTGTGATCTATGGTAATGTAACAACTTTGTTATATTTTTCTCTTATGGTCTTCAATAGGCCACCAATTTGTGTCTTTCGCAAAGGTATAATATATATTAAACTTAATGATAACTTATGAAATATGTTCTGCGCTTGATTTGTTTTCAGCTATTTGTTCGAAGTTCTCACCAGAGACAATGCTACCCTTTGCTGCTAATGTGGTATGTTAATGGTCATTATATGCTACACTCAGCTATATATATTCTACACTGCCATATGTTAGTGTATAATGATGAGAATAAAATTTGAACCTCTAACCTCAAACAAACTTATCCAAGCACTTCAAATGTATCCTAATTTGTATCGTGTGTATAGCAATTAGTGAAATTTATGTATTGAACCTGTTGGAGATATGAGTTAGGTACTCGAAAAAGCTTATGCATTTTAATGGGGATTTCAGGCAGGTGCCAAGTGCAGAGATCTAGGAGCACGAAGCGGTCTTCCATACCGCGCAGACCCACGCCTAGCGTCCTTTATTCAGTAG

Protein sequence

>MS.gene059029.t1

MSLYTYTHVLMQVGCGSVTVDFLATVAAYPKPDDKIRTTTLKVQGGGNAGNALTCLARLGLNTRLVSKIADDSPGRGILDELQTDGVDTSFIVVSKEGTSPFTYIIVDNETKTRTCIHTPGYPPMIPQDLSESSLLSALDGASIVYFDGRLYETALVVAHEAARKNIPILIDAERPREGLDDLLKLADYVVCSAKFPKAWTEASTVPRALVSILLRLPNVKFVAVTLGKDGCILLERSVSASPTTEEVDVDNLLESLELRKDKSASIPTCISSSVAKLKAEGIGTVIGKLYIGTAESIPPSELVDTTGAGDAFIGSVIYAICSKFSPETMLPFAANVAGAKCRDLGARSGLPYRADPRLASFIQ