AlfalfaGEDB | MS.gene059029

M. sativa cultivar XinJiangDaYe / MS.gene059029

KEGG: -
GO: GO:0003674 GO:0003824 GO:0016301 GO:0016740 GO:0016772
PFAM: PF00294.27

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene059029.t1	RHN79957.1	96.6	352	12	0	13	364	115	466	2.80E-190	674.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene059029.t1	P32143	23.9	348	197	7	10	352	1	285	1.6e-13	78.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene059029.t1	A0A072VM08	96.6	352	12	0	13	364	141	492	2.0e-190	674.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049171	MS.gene059029	0.846647	1.90E-59	-1.69E-46
MS.gene049173	MS.gene059029	0.850925	1.24E-60	-1.69E-46
MS.gene049217	MS.gene059029	0.901842	1.78E-78	-1.69E-46
MS.gene049222	MS.gene059029	0.882481	1.00E-70	-1.69E-46
MS.gene049232	MS.gene059029	0.814091	1.84E-51	-1.69E-46
MS.gene049285	MS.gene059029	0.891569	3.53E-74	-1.69E-46
MS.gene049320	MS.gene059029	0.878082	3.74E-69	-1.69E-46
MS.gene04939	MS.gene059029	0.804077	2.57E-49	-1.69E-46
MS.gene049427	MS.gene059029	0.834967	2.21E-56	-1.69E-46
MS.gene049609	MS.gene059029	0.849451	3.21E-60	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene059029.t1	MTR_1g069320	96.591	352	12	0	13	364	141	492	0.0	696
MS.gene059029.t1	MTR_7g099270	73.352	364	97	0	1	364	1	364	0.0	565
MS.gene059029.t1	MTR_1g069325	66.860	344	114	0	21	364	25	368	3.44e-177	496
MS.gene059029.t1	MTR_7g099280	66.667	351	117	0	13	363	58	408	1.91e-175	494
MS.gene059029.t1	MTR_7g099280	66.667	351	117	0	13	363	60	410	2.47e-175	494
MS.gene059029.t1	MTR_7g099280	65.064	312	109	0	13	324	58	369	1.23e-149	427
MS.gene059029.t1	MTR_7g099280	58.974	351	107	1	13	363	68	381	6.17e-145	415
MS.gene059029.t1	MTR_1g069325	57.558	344	95	1	21	364	25	317	1.16e-141	404
MS.gene059029.t1	MTR_7g099280	65.900	261	89	0	13	273	58	318	1.87e-123	360
MS.gene059029.t1	MTR_7g099280	65.737	251	86	0	13	263	58	308	8.47e-119	346

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene059029.t1	AT4G28706	67.236	351	115	0	13	363	50	400	0.0	509
MS.gene059029.t1	AT4G28706	67.236	351	115	0	13	363	52	402	0.0	509
MS.gene059029.t1	AT4G28706	67.330	352	114	1	13	363	52	403	0.0	509
MS.gene059029.t1	AT4G28706	67.330	352	114	1	13	363	52	403	0.0	508
MS.gene059029.t1	AT5G43910	55.114	352	153	2	13	363	16	363	4.04e-139	400
MS.gene059029.t1	AT5G43910	55.806	310	132	2	13	321	16	321	8.87e-121	352
MS.gene059029.t1	AT5G43910	54.887	266	119	1	13	277	16	281	3.39e-103	306
MS.gene059029.t1	AT5G43910	55.725	262	115	1	13	273	16	277	5.67e-103	306
MS.gene059029.t1	AT5G43910	55.725	262	115	1	13	273	16	277	7.89e-103	305

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Find 101 sgRNAs with CRISPR-Local

Find 339 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTTGTGGCTGTAACTT+TGG	0.249227	1.2:-52187781	MS.gene059029:CDS
AAACACAAGGCTCGTTTCTA+AGG	0.332845	1.2:-52191054	MS.gene059029:intron
AAAGGAAGCAACCTTCAAAG+TGG	0.648978	1.2:+52191433	None:intergenic
AAAGGCAGAAGGAATAGGAA+CGG	0.658683	1.2:-52187081	MS.gene059029:CDS
AAATGCATCCCCGGCACCAG+TGG	0.595424	1.2:+52186998	None:intergenic
AAATTAAAGGCAGAAGGAAT+AGG	0.458558	1.2:-52187086	MS.gene059029:CDS
AAATTTGTGGCTGTAACTTT+GGG	0.365260	1.2:-52187780	MS.gene059029:CDS
AACGGTAGCCAAGAAATCGA+CGG	0.675256	1.2:+52191493	None:intergenic
AACTCGATTCTGAAAGATCT+TGG	0.350613	1.2:+52189238	None:intergenic
AAGGAATAGGAACGGTTATC+GGG	0.482979	1.2:-52187073	MS.gene059029:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAACAATGCATTCACCTT+TGG	+	chr1.2:52189678-52189697	None:intergenic	30.0%
AAAATACTGAGATTTGAGAG+TGG	+	chr1.2:52187679-52187698	None:intergenic	30.0%
AAAATTAATTAGTGGGGTTC+TGG	-	chr1.2:52187826-52187845	MS.gene059029:CDS	30.0%
AAAATTTGTGGCTGTAACTT+TGG	-	chr1.2:52190234-52190253	MS.gene059029:intron	30.0%
AAATTAAAGGCAGAAGGAAT+AGG	-	chr1.2:52190929-52190948	MS.gene059029:intron	30.0%
AAATTTGTGGCTGTAACTTT+GGG	-	chr1.2:52190235-52190254	MS.gene059029:intron	30.0%
AAGTAGTTAGAATGAGTCAA+AGG	+	chr1.2:52188703-52188722	None:intergenic	30.0%
AATGCACTTAGCATACATAA+TGG	+	chr1.2:52189242-52189261	None:intergenic	30.0%
ACAATGGTTTCAAAAAACTC+AGG	+	chr1.2:52187331-52187350	None:intergenic	30.0%
ACACTGTATTTGTCCAAAAA+AGG	+	chr1.2:52190656-52190675	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.2	gene	52186467	52191570	52186467	ID=MS.gene059029
chr1.2	mRNA	52186467	52191570	52186467	ID=MS.gene059029.t1;Parent=MS.gene059029
chr1.2	exon	52191445	52191570	52191445	ID=MS.gene059029.t1.exon1;Parent=MS.gene059029.t1
chr1.2	CDS	52191445	52191570	52191445	ID=cds.MS.gene059029.t1;Parent=MS.gene059029.t1
chr1.2	exon	52191055	52191132	52191055	ID=MS.gene059029.t1.exon2;Parent=MS.gene059029.t1
chr1.2	CDS	52191055	52191132	52191055	ID=cds.MS.gene059029.t1;Parent=MS.gene059029.t1
chr1.2	exon	52190573	52190647	52190573	ID=MS.gene059029.t1.exon3;Parent=MS.gene059029.t1
chr1.2	CDS	52190573	52190647	52190573	ID=cds.MS.gene059029.t1;Parent=MS.gene059029.t1
chr1.2	exon	52190065	52190117	52190065	ID=MS.gene059029.t1.exon4;Parent=MS.gene059029.t1
chr1.2	CDS	52190065	52190117	52190065	ID=cds.MS.gene059029.t1;Parent=MS.gene059029.t1
chr1.2	exon	52189158	52189308	52189158	ID=MS.gene059029.t1.exon5;Parent=MS.gene059029.t1
chr1.2	CDS	52189158	52189308	52189158	ID=cds.MS.gene059029.t1;Parent=MS.gene059029.t1
chr1.2	exon	52188357	52188467	52188357	ID=MS.gene059029.t1.exon6;Parent=MS.gene059029.t1
chr1.2	CDS	52188357	52188467	52188357	ID=cds.MS.gene059029.t1;Parent=MS.gene059029.t1
chr1.2	exon	52187742	52187868	52187742	ID=MS.gene059029.t1.exon7;Parent=MS.gene059029.t1
chr1.2	CDS	52187742	52187868	52187742	ID=cds.MS.gene059029.t1;Parent=MS.gene059029.t1
chr1.2	exon	52187553	52187650	52187553	ID=MS.gene059029.t1.exon8;Parent=MS.gene059029.t1
chr1.2	CDS	52187553	52187650	52187553	ID=cds.MS.gene059029.t1;Parent=MS.gene059029.t1
chr1.2	exon	52186979	52187117	52186979	ID=MS.gene059029.t1.exon9;Parent=MS.gene059029.t1
chr1.2	CDS	52186979	52187117	52186979	ID=cds.MS.gene059029.t1;Parent=MS.gene059029.t1
chr1.2	exon	52186790	52186842	52186790	ID=MS.gene059029.t1.exon10;Parent=MS.gene059029.t1
chr1.2	CDS	52186790	52186842	52186790	ID=cds.MS.gene059029.t1;Parent=MS.gene059029.t1
chr1.2	exon	52186467	52186550	52186467	ID=MS.gene059029.t1.exon11;Parent=MS.gene059029.t1
chr1.2	CDS	52186467	52186550	52186467	ID=cds.MS.gene059029.t1;Parent=MS.gene059029.t1

Gene Sequence

>MS.gene059029

ATGTCTCTTTACACGTACACGCACGTGCTTATGCAGGTGGGTTGTGGATCAGTCACCGTCGATTTCTTGGCTACCGTTGCTGCTTATCCTAAGCCAGATGATAAAATCAGAACAACCACTTTGAAGGTTGCTTCCTTTTTTTTTTTTAATAGTTTTAAGCTAGTATAGTGCATATTTGAAATTGATTTTTGAATGAATTGATCTTGTAAAATTAATAATGTAAAATGTTTATATTTGGATATATTTGCGTAAAAAAAAAAAGAAGTGTAAAAAATCACTTTTAGACTCAAAAATTACAAATCCTAGCATCAAGTAGAATCAATGCTGGAAGCAAAGTCAATTCTACTCGAGAACAAATGTCTTTTACACCTCCATAATCAATTCTAGCAGCTCCAAATGCTTTAAAGAGTGGCTTTTATTATGCATTGTAATTTTCAGGTTCAAGGTGGTGGTAATGCCGGCAATGCTTTAACCTGCCTTGCTCGTTTAGGTCTAAACACAAGGCTCGTTTCTAAGGTTATCTATTTTAACTAAACCCTCTCGACATTGCTTATTTAATTATTTAGTTTTAATTTCTGGAAGTATTTAACAGTTTAGGCGCTGTTTGGACCGATAAACCACTTGTTTAAGTGCTTATAAAATAATATTTTATCATATAAGTGCTTATGTATACTTTATTTCTTCAACAAAACATAAAATGAAGTTAAACTCTTTTCATAGACTATTGTGGAAAGTTTATGCGAAATATGCTGAAAACAACTTATGGACAAGTCATGAGTTGTTTTCATAAGCTCTCCAAAACAGTCTCACAAGTATCTATGTCATTAAATAAACTGAATAAAATAAGTCAGTCCAAACAAGCCTGAGTTTTTTGAAACCATTGTGTATGCGTGCATTTTACTAATGTGTTTGGTACTCATTAGATTGCGGATGACAGCCCAGGCAGGGGCATATTAGATGAGCTACAGACTGATGGCGTGGATACATCTTTTATTGTGGTAATGGTTTTAACACTTTTTTCTCTTTAATTGCATTAGCAATCTTCATGAAGCTTGAAATTTGGTTTATTGCATTTTGGTATCTGTAGTAATATTTGAATTTGTTGCTCATGCCTTTTAGTTATGGGCAACAATATAATCATCTGATGAAAGTACATGATCCCTAGTCTGCACCTGATTTCTCCAAGTCTGTACCTGATTTCTTGCACATCCACTCTCAAATCTCAGTATTTTGTTGACACTCCCCACCAACTGATTCGAAGTATAATTTCCCAAGGGTTATCAATTAAATATGACCAGACAAATCGAAATGTAGTTAATTAAGGTTTTATATAGATATGAATTCATTCCATCGAGAATTAAAATTAATTAGTGGGGTTCTGGACTGCCAATGGCCTCTACTGTTTTATTAATACTTTTTTTTTTTTTGTGGTTATGCTCCCTGTTATTTGCAGGTATCTAAAGAGGGAACTTCACCGTTTACGTACATTATTGTGGACAATGAAACGTAATGGTCATTTTCTTACATATGGTTATACTATCTTGACTTCTTCTCTGGATATATTCATGATCTAAATTTCAAAAGAGGGGGAGGGGGGAGCATGAGTTAGGTGGATCTAGTTGAGGATCTGATCATTGCTGTCTTCGTTCCTGTCTTTATCATCTTTGCACACTTCAAAATAGCTAAGACTTGTTTCGACCAGCAATGCGATGCATAAATTGGAAGGAGAAATTGTTTATCATTAAAATGAATAAAACAAAATTATGTGCTATAGTTATTCATATTTATATGAAGATCTTCAAGCATTTCTGGCAATGAAGCTGTTTAACATTTTAATTGTAACTTGAATCATTCTAAGTTAAGGGGAGCCTTAGCATAACTCGCAGAGTTGTTGTCATGTAATTAATTCAGTGTTGTCAATTGTGGATCGCAAGAAATAGCGGTTTGTTCAAATTCTTCTATGCTGTAGTGCTAGAGTGCGGCTATAGCCTTTGTTTGACAACACTTTATACTAAATCGCATATCACGGAACGATATCAGTTTGTTAAAACTCCGCCACTCTATACTATAGCACCACTATTTGACAACACTGATGTAATTAAGAGACTAATTGTTCAAGTTGTGGAATAGCCTCTTGCAATTTCAAGGCTTCCTACAATATATCCTATATGAGTATGACCCTTCTTTGTATCCTGCCATGGCAGGAGATCCATACTTTATAGCACCAGGTTGCCCTTTGACTCATTCTAACTACTTTTTCAGGAAGACTCGAACTTGTATACATACCCCTGGATATCCTCCAATGATACCCCAAGATCTTTCAGAATCGAGTTTGTTATCTGCATTGGATGGAGCAAGCATTGTATATTTTGACGGGAGATTGTATGAAACTGCTCTAGTTGTTGCCCACGAGGTTATCACCTATAAATTTTACTTGCAATATGTTAATTATAAGGGCCCAGTCATATTTAGAAATCAAAGCATCCAGGATTTTATCAAATAAACATATACTTTTATACAATATTTAGTGTAAAGCCAACTTTTATTAATACTAATAATCTCTTATTATAAGAATACCAGCTCATCATCCCAATGCCAATGGTTGAACATGAGATAGTTCATAGTACCGACTTAGACGATAAAGTGTGAAAAGATGATCATATTTTGAAAAATGTAATCTAAAATCCATAGTGGATATTGCAAGTGCATTGATGAGTCAAGCTTTTCCTGTTGTTTCTTTTTTTCACCCTAACATTCGTTCTTTTTCTTTAGCCATTATGTATGCTAAGTGCATTTTTTTATTCAACTTGTAAATCATATAAGAAATTGTTACATGATTTCGCTTGCCTTATGTTTTTGGTGAAGAATTTCAAAATTCTAGGAAATTGAAATTACAGGGTATCCAACCAGAGTGTTTTATGAATCATTTTTTTTAAACCTCAAAAAAATTACATTCCCTTGAGTTTATTATGCAAAAACAGACTCGCTGTCTTTTACTACTTTTCAGTTATTTTCTTTTGCTTGTAAAGGAGGTTGGGAGTGGGGGAAAATAAAAGAGCTTCACGGAGGGAAGTAAACGAAATCTTGTATTTTTCCAGTGCAGGCAGCTAGGAAGAATATACCCATCTTAATTGATGCAGAAAGGCCAAGGGAAGGGTTAGATGATCTCCTGAAATTAGCTGATTATGTTGTATGCTCAGCTAAGTTTCCAAAGGTGAATGCATTGTTTTTATAAAATTGTTGTTGTAAGAAATATATAATACTATGGTTCTCTCACACCTTGTTTACATGTGCATAAATGTTGAATTGATTTTAACAGTTTACTTTTTGTTTCTATACGCCAGGCAGTAAATGTTCTATTTACTGAGCAAAACATATGATGTCTTAAATGACTTGGCATCTAAGAAAAGACTAGTTTTTTGTGGCCCTTGCCCCAAAATACATGTTAAGTTGTGAATATGCTATTTCAATTATCTATAAGCTATATTCTTTTTGTTGTGGGAAAGATATATTGATTTTATGACTGCTGACACCAATGGTACATATCGTTTTACCTTTTCTGGTTGCCCTAATTTTTTGAATTTTAGATAAATATCTGTCCATTTTTTTTACTGAAAAAAATTATTTTTACTCTTCTCTGTGGGGTTGAGTTCCTTTTAAGCATCATCAAATGCACACAAGATAACCTTTCTTTGCTGACAGGCATGGACAGAGGCATCAACTGTTCCGCGAGCGCTTGTTTCTATCCTTTTAAGGTTACCCAACGTAAAATTTGTGGCTGTAACTTTGGGAAAAGATGGTTGTATACTGCTCGAGAGAAGTGTCAGTGGTATGTGTAGATATGATTGTGGGCGTAATCGTTGTATGTTGCATCTGCTTTTAATGTAAACAGGTTTTAATCATTTGACCTTTTCTGGCAGCAAGTCCTACCACAGAAGAGGTGGATGTAGACAATTTATTGGAATCGCTGGAGTTAAGAAAGGATAAGAGTGCATCAATTCCAACCTGCATATCATCGGTAATGCAAATGAAACTCAACTCTTTCTCTATTAAGAATTAGAGTGCATCCATTCCAAATCTTTCTGCCAAGGCCATTTTTATGGTCTACAAGCAGACTAGTGCAGCATTCCCTGCCATTCTCTATGTTTTAATATACCACTTCGAGCTACAAGTCTACAATGTTTGACCTTTTTTGGACAAATACAGTGTTGACCTAATCTCTACTAGACGTTAATTTATATTTTTTTCCTGAGCCAAAATATCAATTATGTAAGATGATGATATGAATGCGTTGCAGAGAAATAAAAATTCTCTAGACACTCATAGTGACACGTACTGAATGACTTGGATCCCTGAAGTTCTAGAAACAGGGATTATAACTTCAATAAAATATCACATGCTTATTTATGTTCTTGATCAACATTTTAGTCATTACCTTTTCCCTTGCACCCAGTCAGTGGCAAAATTAAAGGCAGAAGGAATAGGAACGGTTATCGGGAAACTATACATCGGTACAGCTGAGAGCATTCCGCCCTCGGAGCTTGTTGATACCACTGGTGCCGGGGATGCATTTATTGGATCTGTGATCTATGGTAATGTAACAACTTTGTTATATTTTTCTCTTATGGTCTTCAATAGGCCACCAATTTGTGTCTTTCGCAAAGGTATAATATATATTAAACTTAATGATAACTTATGAAATATGTTCTGCGCTTGATTTGTTTTCAGCTATTTGTTCGAAGTTCTCACCAGAGACAATGCTACCCTTTGCTGCTAATGTGGTATGTTAATGGTCATTATATGCTACACTCAGCTATATATATTCTACACTGCCATATGTTAGTGTATAATGATGAGAATAAAATTTGAACCTCTAACCTCAAACAAACTTATCCAAGCACTTCAAATGTATCCTAATTTGTATCGTGTGTATAGCAATTAGTGAAATTTATGTATTGAACCTGTTGGAGATATGAGTTAGGTACTCGAAAAAGCTTATGCATTTTAATGGGGATTTCAGGCAGGTGCCAAGTGCAGAGATCTAGGAGCACGAAGCGGTCTTCCATACCGCGCAGACCCACGCCTAGCGTCCTTTATTCAGTAG

Protein sequence

>MS.gene059029.t1

MSLYTYTHVLMQVGCGSVTVDFLATVAAYPKPDDKIRTTTLKVQGGGNAGNALTCLARLGLNTRLVSKIADDSPGRGILDELQTDGVDTSFIVVSKEGTSPFTYIIVDNETKTRTCIHTPGYPPMIPQDLSESSLLSALDGASIVYFDGRLYETALVVAHEAARKNIPILIDAERPREGLDDLLKLADYVVCSAKFPKAWTEASTVPRALVSILLRLPNVKFVAVTLGKDGCILLERSVSASPTTEEVDVDNLLESLELRKDKSASIPTCISSSVAKLKAEGIGTVIGKLYIGTAESIPPSELVDTTGAGDAFIGSVIYAICSKFSPETMLPFAANVAGAKCRDLGARSGLPYRADPRLASFIQ