Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90205.t1 | XP_003608416.1 | 97.2 | 389 | 11 | 0 | 1 | 389 | 1 | 389 | 9.30E-216 | 759.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90205.t1 | G7JV65 | 97.2 | 389 | 11 | 0 | 1 | 389 | 1 | 389 | 6.7e-216 | 759.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051343 | MS.gene90205 | 0.827983 | 1.16E-54 | -1.69E-46 |
| MS.gene051975 | MS.gene90205 | 0.826284 | 2.95E-54 | -1.69E-46 |
| MS.gene053058 | MS.gene90205 | 0.839459 | 1.57E-57 | -1.69E-46 |
| MS.gene053564 | MS.gene90205 | 0.954489 | 2.64E-112 | -1.69E-46 |
| MS.gene05469 | MS.gene90205 | 0.832446 | 9.41E-56 | -1.69E-46 |
| MS.gene056986 | MS.gene90205 | 0.830517 | 2.81E-55 | -1.69E-46 |
| MS.gene059146 | MS.gene90205 | 0.80735 | 5.28E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90205.t1 | MTR_4g093860 | 97.172 | 389 | 11 | 0 | 1 | 389 | 1 | 389 | 0.0 | 778 |
| MS.gene90205.t1 | MTR_5g065970 | 39.440 | 393 | 210 | 9 | 18 | 389 | 34 | 419 | 1.47e-84 | 263 |
| MS.gene90205.t1 | MTR_3g100550 | 42.500 | 360 | 176 | 12 | 55 | 389 | 66 | 419 | 6.63e-81 | 254 |
| MS.gene90205.t1 | MTR_7g070530 | 39.560 | 91 | 46 | 3 | 307 | 388 | 419 | 509 | 2.14e-14 | 75.1 |
| MS.gene90205.t1 | MTR_4g013290 | 40.659 | 91 | 45 | 3 | 307 | 388 | 419 | 509 | 2.81e-13 | 71.6 |
| MS.gene90205.t1 | MTR_3g031200 | 40.000 | 90 | 45 | 3 | 307 | 387 | 404 | 493 | 4.53e-13 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90205.t1 | AT1G58120 | 39.286 | 392 | 216 | 12 | 15 | 389 | 34 | 420 | 3.56e-75 | 239 |
| MS.gene90205.t1 | AT5G01710 | 40.000 | 105 | 54 | 3 | 293 | 388 | 409 | 513 | 3.16e-16 | 80.5 |
Find 85 sgRNAs with CRISPR-Local
Find 99 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAAAAGGGTTAGTTGTTTC+TGG | 0.144284 | 4.2:+19749975 | MS.gene90205:CDS |
| TGATGCTTTCTTGGTGATTA+AGG | 0.204279 | 4.2:+19749866 | MS.gene90205:CDS |
| GAATTCCATTCTTCATGATT+TGG | 0.206669 | 4.2:+19750061 | MS.gene90205:CDS |
| TTTAACTTCTGATGCTTTCT+TGG | 0.223021 | 4.2:+19749857 | MS.gene90205:CDS |
| AATTGGTGTCGAAAATAATT+TGG | 0.243328 | 4.2:+19750394 | MS.gene90205:CDS |
| TTTGTTGCATTTCCTTTCTT+GGG | 0.254174 | 4.2:+19749945 | MS.gene90205:CDS |
| CTTCAAGTTCTTGTTTGATT+TGG | 0.260233 | 4.2:-19750525 | None:intergenic |
| ATTATAAAGTTGTGTATCTT+AGG | 0.286056 | 4.2:+19750339 | MS.gene90205:CDS |
| AATTCCATTCTTCATGATTT+GGG | 0.298195 | 4.2:+19750062 | MS.gene90205:CDS |
| GTGGTGATTCTTTGTTGAAT+TGG | 0.325383 | 4.2:+19750150 | MS.gene90205:CDS |
| TGACGAGGGTCTTCTTAAAA+AGG | 0.359175 | 4.2:+19750085 | MS.gene90205:CDS |
| TTTGTTGCATTGAGGAAAAT+TGG | 0.362227 | 4.2:+19750377 | MS.gene90205:CDS |
| GGCCAAGACAACGGCTTTAG+AGG | 0.386015 | 4.2:+19750460 | MS.gene90205:CDS |
| AAGCTTTGAAGATGCTGTTT+CGG | 0.394317 | 4.2:+19750229 | MS.gene90205:CDS |
| ATTCAAAACCTCAACATTGA+TGG | 0.414454 | 4.2:-19750042 | None:intergenic |
| AACAATCAATGGTGGCAGAC+TGG | 0.418492 | 4.2:+19750872 | MS.gene90205:CDS |
| TTGTTGGGTGATTCTCTAGA+TGG | 0.422706 | 4.2:+19750566 | MS.gene90205:CDS |
| ACATCAGTTTGAGGCACATT+CGG | 0.423831 | 4.2:-19750722 | None:intergenic |
| AGAAGAGTGGTAGAGCATAT+TGG | 0.436715 | 4.2:+19750903 | MS.gene90205:CDS |
| CAAGTACCTGCCTGAGTTGT+TGG | 0.444307 | 4.2:+19750550 | MS.gene90205:CDS |
| CATTTGCAAGGTGGTAGGAT+TGG | 0.444924 | 4.2:+19749834 | MS.gene90205:CDS |
| CGAAGAGTCTTCGTTGGTGT+GGG | 0.451764 | 4.2:+19750596 | MS.gene90205:CDS |
| CTCAAACTGATGTTTCTGCT+TGG | 0.460111 | 4.2:+19750732 | MS.gene90205:CDS |
| GTACGGAAGGCTGAGGGATG+AGG | 0.465671 | 4.2:+19750940 | MS.gene90205:CDS |
| GCCACCATTGATTGTTACAT+TGG | 0.467687 | 4.2:-19750865 | None:intergenic |
| CTTGATGACTCGTCAAATGC+TGG | 0.469028 | 4.2:+19750299 | MS.gene90205:CDS |
| AAAACAAAGCAGCAGTTGAA+TGG | 0.478232 | 4.2:+19750630 | MS.gene90205:CDS |
| TCCTCCAATGTAACAATCAA+TGG | 0.481653 | 4.2:+19750861 | MS.gene90205:CDS |
| GAAACAGCATCTTCAAAGCT+TGG | 0.484089 | 4.2:-19750227 | None:intergenic |
| ATTTGAAATCCACAGTCTAC+AGG | 0.484397 | 4.2:+19750685 | MS.gene90205:CDS |
| AACTGACAAAGCCTCTTCCT+TGG | 0.489534 | 4.2:-19750428 | None:intergenic |
| TAGAGCATATTGGCAGTGCT+TGG | 0.490327 | 4.2:+19750913 | MS.gene90205:CDS |
| GTCACCCAAATCATGAAGAA+TGG | 0.499476 | 4.2:-19750066 | None:intergenic |
| ACCCTCTAAAGCCGTTGTCT+TGG | 0.499635 | 4.2:-19750462 | None:intergenic |
| GATTTGGCAGAATCCTGTCT+TGG | 0.503721 | 4.2:-19750509 | None:intergenic |
| TTGGTTATCTAAGCATGTTA+AGG | 0.504184 | 4.2:+19750751 | MS.gene90205:CDS |
| GCTTCATTCAGCCCCACCAT+TGG | 0.506183 | 4.2:-19750976 | None:intergenic |
| GCTCCTTGAGCCACCAAGAC+AGG | 0.509188 | 4.2:+19750496 | MS.gene90205:CDS |
| ACCATTGATTGTTACATTGG+AGG | 0.510946 | 4.2:-19750862 | None:intergenic |
| TTGGCAGAATCCTGTCTTGG+TGG | 0.512751 | 4.2:-19750506 | None:intergenic |
| GATCGTGTTCTGAAAATTGA+TGG | 0.514696 | 4.2:+19750254 | MS.gene90205:CDS |
| ACAATCAATGGTGGCAGACT+GGG | 0.518461 | 4.2:+19750873 | MS.gene90205:CDS |
| TTGTTGCATTTCCTTTCTTG+GGG | 0.519626 | 4.2:+19749946 | MS.gene90205:CDS |
| GCGAAGAGTCTTCGTTGGTG+TGG | 0.523094 | 4.2:+19750595 | MS.gene90205:CDS |
| TGGATTTGTACGGAAGGCTG+AGG | 0.526442 | 4.2:+19750933 | MS.gene90205:CDS |
| TGGCAGTGCTTGGATTTGTA+CGG | 0.526994 | 4.2:+19750923 | MS.gene90205:CDS |
| AAGTACCTGCCTGAGTTGTT+GGG | 0.534976 | 4.2:+19750551 | MS.gene90205:CDS |
| AATCCTGTCTTGGTGGCTCA+AGG | 0.535431 | 4.2:-19750499 | None:intergenic |
| CAGCATTTGACGAGTCATCA+AGG | 0.542449 | 4.2:-19750298 | None:intergenic |
| GCTTTGTCAGTTTGCAACAG+TGG | 0.548747 | 4.2:+19750439 | MS.gene90205:CDS |
| TAGATTCTACACCAAGGAAG+AGG | 0.551394 | 4.2:+19750417 | MS.gene90205:CDS |
| TCTTCATGATTTGGGTGACG+AGG | 0.554220 | 4.2:+19750070 | MS.gene90205:CDS |
| TACGGAAGGCTGAGGGATGA+GGG | 0.560015 | 4.2:+19750941 | MS.gene90205:CDS |
| CTTCATGATTTGGGTGACGA+GGG | 0.561941 | 4.2:+19750071 | MS.gene90205:CDS |
| CGTTGGTGTGGGTTTGCGTG+AGG | 0.572549 | 4.2:+19750607 | MS.gene90205:CDS |
| GACGAGTCATCAAGGCTCAA+AGG | 0.580516 | 4.2:-19750290 | None:intergenic |
| CAAGCAGAAACATCAGTTTG+AGG | 0.582495 | 4.2:-19750731 | None:intergenic |
| CACCTTCAAAACCACGCGGA+GGG | 0.589519 | 4.2:-19750130 | None:intergenic |
| GCCAAGACAACGGCTTTAGA+GGG | 0.591248 | 4.2:+19750461 | MS.gene90205:CDS |
| AGATGAGTATGTTGTAATGA+AGG | 0.592810 | 4.2:+19750775 | MS.gene90205:CDS |
| TGTTGCAGTACACCAATGGT+GGG | 0.594966 | 4.2:+19750964 | MS.gene90205:CDS |
| TGCAACAGTGGCCAAGACAA+CGG | 0.597894 | 4.2:+19750451 | MS.gene90205:CDS |
| GTGTTGCAGTACACCAATGG+TGG | 0.598226 | 4.2:+19750963 | MS.gene90205:CDS |
| GTTGCAGTACACCAATGGTG+GGG | 0.598346 | 4.2:+19750965 | MS.gene90205:CDS |
| TACAAGCGAAGAGTCTTCGT+TGG | 0.599758 | 4.2:+19750590 | MS.gene90205:CDS |
| TTTGTTGAATTGGAATAGTG+AGG | 0.599995 | 4.2:+19750160 | MS.gene90205:CDS |
| AGAGAATCACCCAACAACTC+AGG | 0.603348 | 4.2:-19750560 | None:intergenic |
| GGCTGAAGCAGATGTGGTGG+AGG | 0.604366 | 4.2:+19750796 | MS.gene90205:CDS |
| AGCAACATTTGCAAGGTGGT+AGG | 0.606119 | 4.2:+19749829 | MS.gene90205:CDS |
| AATCACCCAACAACTCAGGC+AGG | 0.612589 | 4.2:-19750556 | None:intergenic |
| GGATTTGTACGGAAGGCTGA+GGG | 0.619736 | 4.2:+19750934 | MS.gene90205:CDS |
| ATGGGTAAGCAACATTTGCA+AGG | 0.638111 | 4.2:+19749822 | MS.gene90205:CDS |
| GAAGGCTGAAGCAGATGTGG+TGG | 0.660257 | 4.2:+19750793 | MS.gene90205:CDS |
| AGTGCTTGGATTTGTACGGA+AGG | 0.663285 | 4.2:+19750927 | MS.gene90205:CDS |
| TCCAATGTAACAATCAATGG+TGG | 0.663863 | 4.2:+19750864 | MS.gene90205:CDS |
| AATGAAGGCTGAAGCAGATG+TGG | 0.670238 | 4.2:+19750790 | MS.gene90205:CDS |
| ACTGGGAAGAGAAAGAAGAG+TGG | 0.677348 | 4.2:+19750890 | MS.gene90205:CDS |
| CCACCTTCAAAACCACGCGG+AGG | 0.677475 | 4.2:-19750131 | None:intergenic |
| CTGATGCTACCTGTAGACTG+TGG | 0.694730 | 4.2:-19750694 | None:intergenic |
| GGTAAGCAACATTTGCAAGG+TGG | 0.702805 | 4.2:+19749825 | MS.gene90205:CDS |
| CTTATTATGAGCCCTCCGCG+TGG | 0.705399 | 4.2:+19750119 | MS.gene90205:CDS |
| AGGGTGTTGCAGTACACCAA+TGG | 0.705824 | 4.2:+19750960 | MS.gene90205:CDS |
| ATTTGGTAGATTCTACACCA+AGG | 0.711338 | 4.2:+19750411 | MS.gene90205:CDS |
| ATGTGGTGGAGGAAATGATG+CGG | 0.729824 | 4.2:+19750807 | MS.gene90205:CDS |
| TCACCACCTTCAAAACCACG+CGG | 0.825666 | 4.2:-19750134 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATAAAGTTGTGTATCTT+AGG | + | chr4.2:19750339-19750358 | MS.gene90205:CDS | 20.0% |
| ! | AATTCCATTCTTCATGATTT+GGG | + | chr4.2:19750062-19750081 | MS.gene90205:CDS | 25.0% |
| !! | CAAATTTTGTACTCTTCTTT+GGG | - | chr4.2:19750670-19750689 | None:intergenic | 25.0% |
| !! | TCAAATTTTGTACTCTTCTT+TGG | - | chr4.2:19750671-19750690 | None:intergenic | 25.0% |
| !!! | AACAACTAACCCTTTTAAAA+AGG | - | chr4.2:19749973-19749992 | None:intergenic | 25.0% |
| !!! | AATTGGTGTCGAAAATAATT+TGG | + | chr4.2:19750394-19750413 | MS.gene90205:CDS | 25.0% |
| !!! | ATTCTATTTTTGTTGCATTG+AGG | + | chr4.2:19750369-19750388 | MS.gene90205:CDS | 25.0% |
| AGATGAGTATGTTGTAATGA+AGG | + | chr4.2:19750775-19750794 | MS.gene90205:CDS | 30.0% | |
| ATTCAAAACCTCAACATTGA+TGG | - | chr4.2:19750045-19750064 | None:intergenic | 30.0% | |
| GAATTCCATTCTTCATGATT+TGG | + | chr4.2:19750061-19750080 | MS.gene90205:CDS | 30.0% | |
| TCTTCTTAAAAAGGAGGATA+AGG | + | chr4.2:19750094-19750113 | MS.gene90205:CDS | 30.0% | |
| TTGGTTATCTAAGCATGTTA+AGG | + | chr4.2:19750751-19750770 | MS.gene90205:CDS | 30.0% | |
| TTTGTTGAATTGGAATAGTG+AGG | + | chr4.2:19750160-19750179 | MS.gene90205:CDS | 30.0% | |
| TTTGTTGCATTGAGGAAAAT+TGG | + | chr4.2:19750377-19750396 | MS.gene90205:CDS | 30.0% | |
| TTTGTTGCATTTCCTTTCTT+GGG | + | chr4.2:19749945-19749964 | MS.gene90205:CDS | 30.0% | |
| ! | CTTCAAGTTCTTGTTTGATT+TGG | - | chr4.2:19750528-19750547 | None:intergenic | 30.0% |
| ! | TTTAACTTCTGATGCTTTCT+TGG | + | chr4.2:19749857-19749876 | MS.gene90205:CDS | 30.0% |
| ! | TTTTGTTGCATTTCCTTTCT+TGG | + | chr4.2:19749944-19749963 | MS.gene90205:CDS | 30.0% |
| !! | TTAAAAGGGTTAGTTGTTTC+TGG | + | chr4.2:19749975-19749994 | MS.gene90205:CDS | 30.0% |
| !! | TTTTGTTTCCATCAATGTTG+AGG | + | chr4.2:19750034-19750053 | MS.gene90205:CDS | 30.0% |
| AAAACAAAGCAGCAGTTGAA+TGG | + | chr4.2:19750630-19750649 | MS.gene90205:CDS | 35.0% | |
| ACACGTAAAAAACGTGTATC+AGG | - | chr4.2:19749894-19749913 | None:intergenic | 35.0% | |
| ATTTGGTAGATTCTACACCA+AGG | + | chr4.2:19750411-19750430 | MS.gene90205:CDS | 35.0% | |
| GTGGTGATTCTTTGTTGAAT+TGG | + | chr4.2:19750150-19750169 | MS.gene90205:CDS | 35.0% | |
| TCCAATGTAACAATCAATGG+TGG | + | chr4.2:19750864-19750883 | MS.gene90205:CDS | 35.0% | |
| TCCTCCAATGTAACAATCAA+TGG | + | chr4.2:19750861-19750880 | MS.gene90205:CDS | 35.0% | |
| TTGTTGCATTTCCTTTCTTG+GGG | + | chr4.2:19749946-19749965 | MS.gene90205:CDS | 35.0% | |
| TTTAAAAAGGACCCCAAGAA+AGG | - | chr4.2:19749960-19749979 | None:intergenic | 35.0% | |
| ! | ACCATTGATTGTTACATTGG+AGG | - | chr4.2:19750865-19750884 | None:intergenic | 35.0% |
| ! | ATTTGAAATCCACAGTCTAC+AGG | + | chr4.2:19750685-19750704 | MS.gene90205:CDS | 35.0% |
| ! | TGATGCTTTCTTGGTGATTA+AGG | + | chr4.2:19749866-19749885 | MS.gene90205:CDS | 35.0% |
| ! | TTCTTGGGGTCCTTTTTAAA+AGG | + | chr4.2:19749960-19749979 | MS.gene90205:CDS | 35.0% |
| !! | AAGCTTTGAAGATGCTGTTT+CGG | + | chr4.2:19750229-19750248 | MS.gene90205:CDS | 35.0% |
| !! | GATCGTGTTCTGAAAATTGA+TGG | + | chr4.2:19750254-19750273 | MS.gene90205:CDS | 35.0% |
| !! | TCTTGGGGTCCTTTTTAAAA+GGG | + | chr4.2:19749961-19749980 | MS.gene90205:CDS | 35.0% |
| !!! | TGTGTCACGTTCTTTGTTTT+TGG | + | chr4.2:19749914-19749933 | MS.gene90205:CDS | 35.0% |
| AGAAGAGTGGTAGAGCATAT+TGG | + | chr4.2:19750903-19750922 | MS.gene90205:CDS | 40.0% | |
| ATGGGTAAGCAACATTTGCA+AGG | + | chr4.2:19749822-19749841 | MS.gene90205:CDS | 40.0% | |
| CAAGCAGAAACATCAGTTTG+AGG | - | chr4.2:19750734-19750753 | None:intergenic | 40.0% | |
| GAAACAGCATCTTCAAAGCT+TGG | - | chr4.2:19750230-19750249 | None:intergenic | 40.0% | |
| GTCACCCAAATCATGAAGAA+TGG | - | chr4.2:19750069-19750088 | None:intergenic | 40.0% | |
| TAGATTCTACACCAAGGAAG+AGG | + | chr4.2:19750417-19750436 | MS.gene90205:CDS | 40.0% | |
| TGACGAGGGTCTTCTTAAAA+AGG | + | chr4.2:19750085-19750104 | MS.gene90205:CDS | 40.0% | |
| TTGTTGGGTGATTCTCTAGA+TGG | + | chr4.2:19750566-19750585 | MS.gene90205:CDS | 40.0% | |
| ! | ACATCAGTTTGAGGCACATT+CGG | - | chr4.2:19750725-19750744 | None:intergenic | 40.0% |
| ! | CTCAAACTGATGTTTCTGCT+TGG | + | chr4.2:19750732-19750751 | MS.gene90205:CDS | 40.0% |
| ! | GCCACCATTGATTGTTACAT+TGG | - | chr4.2:19750868-19750887 | None:intergenic | 40.0% |
| AACAATCAATGGTGGCAGAC+TGG | + | chr4.2:19750872-19750891 | MS.gene90205:CDS | 45.0% | |
| AACTGACAAAGCCTCTTCCT+TGG | - | chr4.2:19750431-19750450 | None:intergenic | 45.0% | |
| AAGTACCTGCCTGAGTTGTT+GGG | + | chr4.2:19750551-19750570 | MS.gene90205:CDS | 45.0% | |
| AATGAAGGCTGAAGCAGATG+TGG | + | chr4.2:19750790-19750809 | MS.gene90205:CDS | 45.0% | |
| ACAATCAATGGTGGCAGACT+GGG | + | chr4.2:19750873-19750892 | MS.gene90205:CDS | 45.0% | |
| ACTGGGAAGAGAAAGAAGAG+TGG | + | chr4.2:19750890-19750909 | MS.gene90205:CDS | 45.0% | |
| AGAGAATCACCCAACAACTC+AGG | - | chr4.2:19750563-19750582 | None:intergenic | 45.0% | |
| AGCAACATTTGCAAGGTGGT+AGG | + | chr4.2:19749829-19749848 | MS.gene90205:CDS | 45.0% | |
| AGTGCTTGGATTTGTACGGA+AGG | + | chr4.2:19750927-19750946 | MS.gene90205:CDS | 45.0% | |
| CAGCATTTGACGAGTCATCA+AGG | - | chr4.2:19750301-19750320 | None:intergenic | 45.0% | |
| CATTTGCAAGGTGGTAGGAT+TGG | + | chr4.2:19749834-19749853 | MS.gene90205:CDS | 45.0% | |
| CGAGGGTCTTCTTAAAAAGG+AGG | + | chr4.2:19750088-19750107 | MS.gene90205:CDS | 45.0% | |
| GATTTGGCAGAATCCTGTCT+TGG | - | chr4.2:19750512-19750531 | None:intergenic | 45.0% | |
| GCTTTGTCAGTTTGCAACAG+TGG | + | chr4.2:19750439-19750458 | MS.gene90205:CDS | 45.0% | |
| GGTAAGCAACATTTGCAAGG+TGG | + | chr4.2:19749825-19749844 | MS.gene90205:CDS | 45.0% | |
| TACAAGCGAAGAGTCTTCGT+TGG | + | chr4.2:19750590-19750609 | MS.gene90205:CDS | 45.0% | |
| TAGAGCATATTGGCAGTGCT+TGG | + | chr4.2:19750913-19750932 | MS.gene90205:CDS | 45.0% | |
| TGGCAGTGCTTGGATTTGTA+CGG | + | chr4.2:19750923-19750942 | MS.gene90205:CDS | 45.0% | |
| TGTTGCAGTACACCAATGGT+GGG | + | chr4.2:19750964-19750983 | MS.gene90205:CDS | 45.0% | |
| ! | ATGTGGTGGAGGAAATGATG+CGG | + | chr4.2:19750807-19750826 | MS.gene90205:CDS | 45.0% |
| ! | CTTCATGATTTGGGTGACGA+GGG | + | chr4.2:19750071-19750090 | MS.gene90205:CDS | 45.0% |
| ! | CTTGATGACTCGTCAAATGC+TGG | + | chr4.2:19750299-19750318 | MS.gene90205:CDS | 45.0% |
| ! | TCTTCATGATTTGGGTGACG+AGG | + | chr4.2:19750070-19750089 | MS.gene90205:CDS | 45.0% |
| AATCACCCAACAACTCAGGC+AGG | - | chr4.2:19750559-19750578 | None:intergenic | 50.0% | |
| CAAGTACCTGCCTGAGTTGT+TGG | + | chr4.2:19750550-19750569 | MS.gene90205:CDS | 50.0% | |
| CGAAGAGTCTTCGTTGGTGT+GGG | + | chr4.2:19750596-19750615 | MS.gene90205:CDS | 50.0% | |
| CTGATGCTACCTGTAGACTG+TGG | - | chr4.2:19750697-19750716 | None:intergenic | 50.0% | |
| GACGAGTCATCAAGGCTCAA+AGG | - | chr4.2:19750293-19750312 | None:intergenic | 50.0% | |
| GGATTTGTACGGAAGGCTGA+GGG | + | chr4.2:19750934-19750953 | MS.gene90205:CDS | 50.0% | |
| GTGTTGCAGTACACCAATGG+TGG | + | chr4.2:19750963-19750982 | MS.gene90205:CDS | 50.0% | |
| GTTGCAGTACACCAATGGTG+GGG | + | chr4.2:19750965-19750984 | MS.gene90205:CDS | 50.0% | |
| TCACCACCTTCAAAACCACG+CGG | - | chr4.2:19750137-19750156 | None:intergenic | 50.0% | |
| TGCAACAGTGGCCAAGACAA+CGG | + | chr4.2:19750451-19750470 | MS.gene90205:CDS | 50.0% | |
| TGGATTTGTACGGAAGGCTG+AGG | + | chr4.2:19750933-19750952 | MS.gene90205:CDS | 50.0% | |
| TTGGCAGAATCCTGTCTTGG+TGG | - | chr4.2:19750509-19750528 | None:intergenic | 50.0% | |
| ! | AATCCTGTCTTGGTGGCTCA+AGG | - | chr4.2:19750502-19750521 | None:intergenic | 50.0% |
| !! | ACCCTCTAAAGCCGTTGTCT+TGG | - | chr4.2:19750465-19750484 | None:intergenic | 50.0% |
| !! | AGGGTGTTGCAGTACACCAA+TGG | + | chr4.2:19750960-19750979 | MS.gene90205:CDS | 50.0% |
| !! | GCCAAGACAACGGCTTTAGA+GGG | + | chr4.2:19750461-19750480 | MS.gene90205:CDS | 50.0% |
| CACCTTCAAAACCACGCGGA+GGG | - | chr4.2:19750133-19750152 | None:intergenic | 55.0% | |
| CTTATTATGAGCCCTCCGCG+TGG | + | chr4.2:19750119-19750138 | MS.gene90205:CDS | 55.0% | |
| GAAGGCTGAAGCAGATGTGG+TGG | + | chr4.2:19750793-19750812 | MS.gene90205:CDS | 55.0% | |
| GCGAAGAGTCTTCGTTGGTG+TGG | + | chr4.2:19750595-19750614 | MS.gene90205:CDS | 55.0% | |
| TACGGAAGGCTGAGGGATGA+GGG | + | chr4.2:19750941-19750960 | MS.gene90205:CDS | 55.0% | |
| ! | GGCCAAGACAACGGCTTTAG+AGG | + | chr4.2:19750460-19750479 | MS.gene90205:CDS | 55.0% |
| CCACCTTCAAAACCACGCGG+AGG | - | chr4.2:19750134-19750153 | None:intergenic | 60.0% | |
| CGTTGGTGTGGGTTTGCGTG+AGG | + | chr4.2:19750607-19750626 | MS.gene90205:CDS | 60.0% | |
| GCTCCTTGAGCCACCAAGAC+AGG | + | chr4.2:19750496-19750515 | MS.gene90205:CDS | 60.0% | |
| GGCTGAAGCAGATGTGGTGG+AGG | + | chr4.2:19750796-19750815 | MS.gene90205:CDS | 60.0% | |
| GTACGGAAGGCTGAGGGATG+AGG | + | chr4.2:19750940-19750959 | MS.gene90205:CDS | 60.0% | |
| !!! | AGCCCTCCGCGTGGTTTTGA+AGG | + | chr4.2:19750128-19750147 | MS.gene90205:CDS | 60.0% |
| !!! | CCTCCGCGTGGTTTTGAAGG+TGG | + | chr4.2:19750131-19750150 | MS.gene90205:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 19749822 | 19750991 | 19749822 | ID=MS.gene90205 |
| chr4.2 | mRNA | 19749822 | 19750991 | 19749822 | ID=MS.gene90205.t1;Parent=MS.gene90205 |
| chr4.2 | exon | 19749822 | 19750991 | 19749822 | ID=MS.gene90205.t1.exon1;Parent=MS.gene90205.t1 |
| chr4.2 | CDS | 19749822 | 19750991 | 19749822 | ID=cds.MS.gene90205.t1;Parent=MS.gene90205.t1 |
| Gene Sequence |
| Protein sequence |
