AlfalfaGEDB | MS.gene053564

M. sativa cultivar XinJiangDaYe / MS.gene053564

KEGG: -
GO: -
PFAM: -

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene053564.t1	XP_003608416.1	97.2	389	11	0	1	389	1	389	9.30E-216	759.2

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene053564.t1	G7JV65	97.2	389	11	0	1	389	1	389	6.7e-216	759.2

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050085	MS.gene053564	0.80366	3.14E-49	-1.69E-46
MS.gene050359	MS.gene053564	0.800794	1.22E-48	-1.69E-46
MS.gene050654	MS.gene053564	0.803786	2.95E-49	-1.69E-46
MS.gene050838	MS.gene053564	0.814579	1.43E-51	-1.69E-46
MS.gene051003	MS.gene053564	0.81845	1.95E-52	-1.69E-46
MS.gene051233	MS.gene053564	0.8111	8.29E-51	-1.69E-46
MS.gene051234	MS.gene053564	0.806262	8.96E-50	-1.69E-46
MS.gene051343	MS.gene053564	0.845573	3.73E-59	-1.69E-46
MS.gene051676	MS.gene053564	0.822041	2.93E-53	-1.69E-46
MS.gene05188	MS.gene053564	0.817731	2.83E-52	-1.69E-46

Showing 1 to 10 of 255 entries

Previous1 2 3 4 5…26Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene053564.t1	MTR_4g093860	97.172	389	11	0	1	389	1	389	0.0	778
MS.gene053564.t1	MTR_5g065970	39.440	393	210	9	18	389	34	419	1.47e-84	263
MS.gene053564.t1	MTR_3g100550	42.500	360	176	12	55	389	66	419	6.63e-81	254
MS.gene053564.t1	MTR_7g070530	39.560	91	46	3	307	388	419	509	2.14e-14	75.1
MS.gene053564.t1	MTR_4g013290	40.659	91	45	3	307	388	419	509	2.81e-13	71.6
MS.gene053564.t1	MTR_3g031200	40.000	90	45	3	307	387	404	493	4.53e-13	70.9

Showing 1 to 6 of 6 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene053564.t1	AT1G58120	39.286	392	216	12	15	389	34	420	3.56e-75	239
MS.gene053564.t1	AT5G01710	40.000	105	54	3	293	388	409	513	3.16e-16	80.5

Showing 1 to 2 of 2 entries

Previous1Next

Find 85 sgRNAs with CRISPR-Local

Find 99 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAAAGCAGCAGTTGAA+TGG	0.478232	4.4:+21251235	MS.gene053564:CDS
AACAATCAATGGTGGCAGAC+TGG	0.418492	4.4:+21251477	MS.gene053564:CDS
AACTGACAAAGCCTCTTCCT+TGG	0.489534	4.4:-21251033	None:intergenic
AAGCTTTGAAGATGCTGTTT+CGG	0.394317	4.4:+21250834	MS.gene053564:CDS
AAGTACCTGCCTGAGTTGTT+GGG	0.534976	4.4:+21251156	MS.gene053564:CDS
AATCACCCAACAACTCAGGC+AGG	0.612589	4.4:-21251161	None:intergenic
AATCCTGTCTTGGTGGCTCA+AGG	0.535431	4.4:-21251104	None:intergenic
AATGAAGGCTGAAGCAGATG+TGG	0.670238	4.4:+21251395	MS.gene053564:CDS
AATTCCATTCTTCATGATTT+GGG	0.298195	4.4:+21250667	MS.gene053564:CDS
AATTGGTGTCGAAAATAATT+TGG	0.243328	4.4:+21250999	MS.gene053564:CDS

Showing 1 to 10 of 85 entries

Previous1 2 3 4 5…9Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AGATGAGTATGTTGTAATGA+AGG	+	chr4.4:21251380-21251399	MS.gene053564:CDS	30.0%
ATTCAAAACCTCAACATTGA+TGG	-	chr4.4:21250650-21250669	None:intergenic	30.0%
GAATTCCATTCTTCATGATT+TGG	+	chr4.4:21250666-21250685	MS.gene053564:CDS	30.0%
TCTTCTTAAAAAGGAGGATA+AGG	+	chr4.4:21250699-21250718	MS.gene053564:CDS	30.0%
TTGGTTATCTAAGCATGTTA+AGG	+	chr4.4:21251356-21251375	MS.gene053564:CDS	30.0%
TTTGTTGAATTGGAATAGTG+AGG	+	chr4.4:21250765-21250784	MS.gene053564:CDS	30.0%
TTTGTTGCATTGAGGAAAAT+TGG	+	chr4.4:21250982-21251001	MS.gene053564:CDS	30.0%
TTTGTTGCATTTCCTTTCTT+GGG	+	chr4.4:21250550-21250569	MS.gene053564:CDS	30.0%
AAAACAAAGCAGCAGTTGAA+TGG	+	chr4.4:21251235-21251254	MS.gene053564:CDS	35.0%
ACACGTAAAAAACGTGTATC+AGG	-	chr4.4:21250499-21250518	None:intergenic	35.0%

Showing 1 to 10 of 99 entries

Previous1 2 3 4 5…10Next

Chromosome	Type	Strat	End	Strand	Name
chr4.4	gene	21250427	21251596	21250427	ID=MS.gene053564
chr4.4	mRNA	21250427	21251596	21250427	ID=MS.gene053564.t1;Parent=MS.gene053564
chr4.4	exon	21250427	21251596	21250427	ID=MS.gene053564.t1.exon1;Parent=MS.gene053564.t1
chr4.4	CDS	21250427	21251596	21250427	ID=cds.MS.gene053564.t1;Parent=MS.gene053564.t1

Gene Sequence

>MS.gene053564

ATGGGTAAGCAACATTTGCAAGGTGGTAGGATTGGTTTAACTTCTGATGCTTTCTTGGTGATTAAGGTTCCTGATACACGTTTTTTACGTGTTGTGTCACGTTCTTTGTTTTTGGCTTTGTTTTTTGTTGCATTTCCTTTCTTGGGGTCCTTTTTAAAAGGGTTAGTTGTTTCTGGATTTGATGCTATTGTTGTTAATGCTTCAACTTCAACTTTTGTTTCCATCAATGTTGAGGTTTTGAATTCCATTCTTCATGATTTGGGTGACGAGGGTCTTCTTAAAAAGGAGGATAAGGCTCTTATTATGAGCCCTCCGCGTGGTTTTGAAGGTGGTGATTCTTTGTTGAATTGGAATAGTGAGGTTGATGTTGTTATGCATGATGAGTCTTATGATTTTGCGTTTGCACCAAGCTTTGAAGATGCTGTTTCGGCTGATCGTGTTCTGAAAATTGATGGCATTGTAGCTTTTCCTTTGAGCCTTGATGACTCGTCAAATGCTGGTTTTAGAAAACAATCTAATTATAAAGTTGTGTATCTTAGGCGTTATGATTCTATTTTTGTTGCATTGAGGAAAATTGGTGTCGAAAATAATTTGGTAGATTCTACACCAAGGAAGAGGCTTTGTCAGTTTGCAACAGTGGCCAAGACAACGGCTTTAGAGGGTCTCGAAGATGCGCTCCTTGAGCCACCAAGACAGGATTCTGCCAAATCAAACAAGAACTTGAAGATCAAGTACCTGCCTGAGTTGTTGGGTGATTCTCTAGATGGTTATAAGCGAAGAGTCTTCGTTGGTGTGGGTTTGCGTGAGGAAAACAAAGCAGCAGTTGAATGGTTTGAGAGAAACTACCCAAAGAAGAGTACAAAATTTGAAATCCACAGTCTACAGGTAGCATCAGAAGAGCCGAATGTGCCTCAAACTGATGTTTCTGCTTGGTTATCTAAGCATGTTAAGGCAGATGAGTATGTTGTAATGAAGGCTGAAGCAGATGTGGTGGAGGAAATGATGCGGAAAAAGACAATTTGCTTAGTCGATGAATTGTTCCTCCAATGTAACAATCAATGGTGGCAGACTGGGAAGAGAAAGAAGAGTGGTAGAGCATATTGGCAGTGCTTGGATTTGTACGGAAGGCTGAGGGATGAGGGTGTTGCAGTACACCAATGGTGGGGCTGA

Protein sequence

>MS.gene053564.t1

MGKQHLQGGRIGLTSDAFLVIKVPDTRFLRVVSRSLFLALFFVAFPFLGSFLKGLVVSGFDAIVVNASTSTFVSINVEVLNSILHDLGDEGLLKKEDKALIMSPPRGFEGGDSLLNWNSEVDVVMHDESYDFAFAPSFEDAVSADRVLKIDGIVAFPLSLDDSSNAGFRKQSNYKVVYLRRYDSIFVALRKIGVENNLVDSTPRKRLCQFATVAKTTALEGLEDALLEPPRQDSAKSNKNLKIKYLPELLGDSLDGYKRRVFVGVGLREENKAAVEWFERNYPKKSTKFEIHSLQVASEEPNVPQTDVSAWLSKHVKADEYVVMKAEADVVEEMMRKKTICLVDELFLQCNNQWWQTGKRKKSGRAYWQCLDLYGRLRDEGVAVHQWWG