Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene90553.t1 | RHN51852.1 | 48.9 | 92 | 47 | 0 | 68 | 159 | 225 | 316 | 4.50E-19 | 104.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene90553.t1 | A0A396HET7 | 48.9 | 92 | 47 | 0 | 68 | 159 | 225 | 316 | 3.2e-19 | 104.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049283 | MS.gene90553 | 0.809562 | 1.78E-50 | -1.69E-46 |
MS.gene051676 | MS.gene90553 | 0.832203 | 1.08E-55 | -1.69E-46 |
MS.gene051902 | MS.gene90553 | 0.845829 | 3.18E-59 | -1.69E-46 |
MS.gene053298 | MS.gene90553 | 0.80385 | 2.86E-49 | -1.69E-46 |
MS.gene053963 | MS.gene90553 | 0.802809 | 4.70E-49 | -1.69E-46 |
MS.gene054892 | MS.gene90553 | 0.814671 | 1.37E-51 | -1.69E-46 |
MS.gene054893 | MS.gene90553 | 0.805081 | 1.59E-49 | -1.69E-46 |
MS.gene057102 | MS.gene90553 | 0.825088 | 5.67E-54 | -1.69E-46 |
MS.gene057155 | MS.gene90553 | 0.801847 | 7.42E-49 | -1.69E-46 |
MS.gene057208 | MS.gene90553 | 0.807916 | 4.00E-50 | -1.69E-46 |
MS.gene057890 | MS.gene90553 | -0.815853 | 7.47E-52 | -1.69E-46 |
MS.gene057893 | MS.gene90553 | -0.807191 | 5.70E-50 | -1.69E-46 |
MS.gene05985 | MS.gene90553 | -0.815309 | 9.88E-52 | -1.69E-46 |
MS.gene060259 | MS.gene90553 | 0.81213 | 4.95E-51 | -1.69E-46 |
MS.gene060365 | MS.gene90553 | 0.816089 | 6.62E-52 | -1.69E-46 |
MS.gene060937 | MS.gene90553 | 0.818696 | 1.71E-52 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene90553.t1 | MTR_0091s0080 | 47.826 | 92 | 48 | 0 | 68 | 159 | 256 | 347 | 1.27e-26 | 105 |
MS.gene90553.t1 | MTR_2g081100 | 84.615 | 52 | 8 | 0 | 9 | 60 | 498 | 549 | 1.47e-21 | 91.3 |
MS.gene90553.t1 | MTR_2g081100 | 84.615 | 52 | 8 | 0 | 9 | 60 | 498 | 549 | 1.85e-21 | 91.3 |
MS.gene90553.t1 | MTR_1g052720 | 38.144 | 97 | 60 | 0 | 68 | 164 | 54 | 150 | 3.69e-19 | 83.2 |
MS.gene90553.t1 | MTR_0246s0040 | 36.842 | 95 | 60 | 0 | 65 | 159 | 80 | 174 | 4.81e-16 | 74.7 |
MS.gene90553.t1 | MTR_6g465600 | 35.870 | 92 | 59 | 0 | 68 | 159 | 57 | 148 | 1.34e-15 | 73.2 |
MS.gene90553.t1 | MTR_8g064930 | 61.364 | 44 | 17 | 0 | 67 | 110 | 7 | 50 | 8.58e-15 | 65.9 |
MS.gene90553.t1 | MTR_0091s0090 | 45.902 | 61 | 33 | 0 | 99 | 159 | 4 | 64 | 4.07e-13 | 65.9 |
MS.gene90553.t1 | MTR_1g105780 | 26.667 | 105 | 69 | 1 | 71 | 167 | 55 | 159 | 7.86e-11 | 59.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 44 sgRNAs with CRISPR-Local
Find 128 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCTGAATGACATTGATATTC+TGG | 0.189504 | 2.1:-41131900 | None:intergenic |
ATTAAGGCTTGGTTTCATTA+AGG | 0.279842 | 2.1:+41130244 | MS.gene90553:CDS |
CCAACGTTCATTGATTATAA+TGG | 0.304555 | 2.1:+41132105 | MS.gene90553:CDS |
CCAGAATATCAATGTCATTC+AGG | 0.310628 | 2.1:+41131900 | MS.gene90553:CDS |
AAAGCCAACAAATGACATTA+AGG | 0.345467 | 2.1:+41130228 | None:intergenic |
TCAATGAACGTTGGTGTAGC+TGG | 0.388479 | 2.1:-41132096 | None:intergenic |
TCCTGTTTGTTATAGCCATA+AGG | 0.397282 | 2.1:-41132038 | None:intergenic |
TCTTGGTGCTCAGTCCTTTG+AGG | 0.398508 | 2.1:+41130405 | MS.gene90553:CDS |
ACAAAATAGAGCTGGGTGCC+TGG | 0.399485 | 2.1:+41131983 | MS.gene90553:CDS |
ATGACATTGATATTCTGGTT+TGG | 0.423705 | 2.1:-41131895 | None:intergenic |
TGGCTATAACAAACAGGAAA+GGG | 0.435466 | 2.1:+41132043 | MS.gene90553:CDS |
AGTGAATTGTGAAGATTCCT+TGG | 0.446636 | 2.1:-41130383 | None:intergenic |
GTATCCGAATCTACTCCTTA+TGG | 0.451663 | 2.1:+41132023 | MS.gene90553:CDS |
CCTTTCCGACCTCTAGTGCT+TGG | 0.456216 | 2.1:-41130644 | None:intergenic |
TCATCATCGCTGAAGGAAAC+CGG | 0.458878 | 2.1:-41130594 | None:intergenic |
CGCATATGTCAGGCAAATCC+AGG | 0.467174 | 2.1:-41132001 | None:intergenic |
GAATCTTCACAATTCACTCT+TGG | 0.470201 | 2.1:+41130388 | MS.gene90553:CDS |
TCCTTATGGCTATAACAAAC+AGG | 0.471089 | 2.1:+41132037 | MS.gene90553:CDS |
TTCGCAGAACAAGGCTAGAA+TGG | 0.483429 | 2.1:+41131813 | MS.gene90553:intron |
TGCAGCTGGAGCTGATAGTC+CGG | 0.486818 | 2.1:+41130575 | MS.gene90553:CDS |
GTGTCAGCATGCATTTCCCT+TGG | 0.489277 | 2.1:+41132144 | MS.gene90553:CDS |
TTTGTTCTAGGAACGTGTTA+AGG | 0.492658 | 2.1:+41130345 | MS.gene90553:intron |
AGAGTTCTACAAAATAGAGC+TGG | 0.500119 | 2.1:+41131975 | MS.gene90553:CDS |
CAACAAATGACATTAAGGCT+TGG | 0.502037 | 2.1:+41130233 | None:intergenic |
TTTCAAGGCAGAAGTGCAGC+TGG | 0.505124 | 2.1:+41130561 | MS.gene90553:CDS |
ATTTGTTGGGTTTACCTCAA+AGG | 0.513130 | 2.1:-41130419 | None:intergenic |
ACATTCTTTGACAAAACAGT+TGG | 0.514565 | 2.1:-41131836 | None:intergenic |
TGGAATGGAATTTGTTGGGT+AGG | 0.516364 | 2.1:-41132076 | None:intergenic |
GATTCGGATACGCATATGTC+AGG | 0.519976 | 2.1:-41132011 | None:intergenic |
ATAGCCATAAGGAGTAGATT+CGG | 0.520589 | 2.1:-41132027 | None:intergenic |
TAGCTGGAATGGAATTTGTT+GGG | 0.523834 | 2.1:-41132080 | None:intergenic |
AGTTAGCATACTATCTTCCA+AGG | 0.534470 | 2.1:-41132161 | None:intergenic |
GTAGCTGGAATGGAATTTGT+TGG | 0.537737 | 2.1:-41132081 | None:intergenic |
GAACGTTGGTGTAGCTGGAA+TGG | 0.542196 | 2.1:-41132091 | None:intergenic |
GGAGCGATCTACGCGCTCCA+AGG | 0.554334 | 2.1:+41130366 | MS.gene90553:CDS |
ATGGCTATAACAAACAGGAA+AGG | 0.562348 | 2.1:+41132042 | MS.gene90553:CDS |
GGCATCTTCATCATCGCTGA+AGG | 0.569407 | 2.1:-41130601 | None:intergenic |
TTATAATGGTGAAACTAGCT+TGG | 0.578050 | 2.1:+41132119 | MS.gene90553:CDS |
AGCTCAAAACCAAGCACTAG+AGG | 0.602341 | 2.1:+41130635 | MS.gene90553:CDS |
CCATTATAATCAATGAACGT+TGG | 0.604275 | 2.1:-41132105 | None:intergenic |
GAGTTCTACAAAATAGAGCT+GGG | 0.606882 | 2.1:+41131976 | MS.gene90553:CDS |
GGCTATAACAAACAGGAAAG+GGG | 0.627042 | 2.1:+41132044 | MS.gene90553:CDS |
TAATGGTGAAACTAGCTTGG+TGG | 0.627473 | 2.1:+41132122 | MS.gene90553:CDS |
GTTAGCATACTATCTTCCAA+GGG | 0.666617 | 2.1:-41132160 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | GTCAATTTTTTATTATTTTT+TGG | + | chr2.1:41131314-41131333 | MS.gene90553:intron | 10.0% |
!!! | TTTATTTGTTATTACTATAT+AGG | + | chr2.1:41131761-41131780 | MS.gene90553:intron | 10.0% |
!! | AAATTACATTTATTACTTGA+TGG | - | chr2.1:41131666-41131685 | None:intergenic | 15.0% |
!! | AATGTATAATATCATTTGTT+GGG | - | chr2.1:41130435-41130454 | None:intergenic | 15.0% |
!! | AATTACATTTATTACTTGAT+GGG | - | chr2.1:41131665-41131684 | None:intergenic | 15.0% |
!! | ATTGAAAGAAAGAAAAAAAA+AGG | - | chr2.1:41130773-41130792 | None:intergenic | 15.0% |
!! | CAATGTATAATATCATTTGT+TGG | - | chr2.1:41130436-41130455 | None:intergenic | 20.0% |
!! | TGAAAATTATGTAAAAAGCA+GGG | + | chr2.1:41130474-41130493 | MS.gene90553:intron | 20.0% |
!! | TTGAAAATTATGTAAAAAGC+AGG | + | chr2.1:41130473-41130492 | MS.gene90553:intron | 20.0% |
!!! | TGTAATTTGCTTATATGTTT+TGG | + | chr2.1:41131678-41131697 | MS.gene90553:intron | 20.0% |
!!! | TTGTGATCAGAATTATTTTA+TGG | + | chr2.1:41130284-41130303 | MS.gene90553:intron | 20.0% |
! | AAGAAATAAGCTAAGAATGA+AGG | - | chr2.1:41130526-41130545 | None:intergenic | 25.0% |
! | AGATACACATGAAAAAATGA+GGG | - | chr2.1:41131716-41131735 | None:intergenic | 25.0% |
! | ATCATCATCATAACTGTTAA+TGG | + | chr2.1:41130909-41130928 | MS.gene90553:intron | 25.0% |
! | TAGATACACATGAAAAAATG+AGG | - | chr2.1:41131717-41131736 | None:intergenic | 25.0% |
! | TCATGTGTATCTATTTAACT+TGG | + | chr2.1:41131724-41131743 | MS.gene90553:intron | 25.0% |
! | TTTATGTCTTAAGCTAGTAA+AGG | - | chr2.1:41131430-41131449 | None:intergenic | 25.0% |
!! | ATCACTTTCATTGATTATTG+TGG | + | chr2.1:41131009-41131028 | MS.gene90553:intron | 25.0% |
!! | GAAGTCTTCTAAATTAGTTT+AGG | + | chr2.1:41131531-41131550 | MS.gene90553:intron | 25.0% |
!! | TTACTAGCTTAAGACATAAA+TGG | + | chr2.1:41131430-41131449 | MS.gene90553:intron | 25.0% |
!! | TTATTTCTTTATTCCGTACA+GGG | + | chr2.1:41130537-41130556 | MS.gene90553:intron | 25.0% |
!!! | ATTTTTTGGTTCTGATATGT+TGG | + | chr2.1:41131328-41131347 | MS.gene90553:intron | 25.0% |
!!! | GTATCTATTTAACTTGGTTT+TGG | + | chr2.1:41131730-41131749 | MS.gene90553:intron | 25.0% |
AAGTCTCTGGTATGTAAAAT+TGG | + | chr2.1:41131072-41131091 | MS.gene90553:intron | 30.0% | |
ACATTCTTTGACAAAACAGT+TGG | - | chr2.1:41131839-41131858 | None:intergenic | 30.0% | |
ACCTTAATATAAACCAAGAG+TGG | - | chr2.1:41131630-41131649 | None:intergenic | 30.0% | |
CCATTATAATCAATGAACGT+TGG | - | chr2.1:41132108-41132127 | None:intergenic | 30.0% | |
CTGTGAATAACCATATGATT+GGG | + | chr2.1:41131238-41131257 | MS.gene90553:intron | 30.0% | |
GAAAGAAAAAAAAAGGTGAG+AGG | - | chr2.1:41130766-41130785 | None:intergenic | 30.0% | |
TATAAACCAAGAGTGGAATT+TGG | - | chr2.1:41131623-41131642 | None:intergenic | 30.0% | |
TCCACTCTTGGTTTATATTA+AGG | + | chr2.1:41131626-41131645 | MS.gene90553:intron | 30.0% | |
TCTGTGAATAACCATATGAT+TGG | + | chr2.1:41131237-41131256 | MS.gene90553:intron | 30.0% | |
TTATAATGGTGAAACTAGCT+TGG | + | chr2.1:41132119-41132138 | MS.gene90553:CDS | 30.0% | |
! | AAAACGAGAAGGTCTATTTT+CGG | + | chr2.1:41131932-41131951 | MS.gene90553:CDS | 30.0% |
! | AACTGTTTTGTCAAAGAATG+TGG | + | chr2.1:41131838-41131857 | MS.gene90553:CDS | 30.0% |
! | ATCGTTCTTCTTTTTGTTCT+AGG | + | chr2.1:41130333-41130352 | MS.gene90553:intron | 30.0% |
! | ATGACACTAATATCCTTTTC+CGG | + | chr2.1:41131360-41131379 | MS.gene90553:intron | 30.0% |
! | ATGACATTGATATTCTGGTT+TGG | - | chr2.1:41131898-41131917 | None:intergenic | 30.0% |
! | ATTAAGGCTTGGTTTCATTA+AGG | + | chr2.1:41130244-41130263 | MS.gene90553:CDS | 30.0% |
! | CCAACGTTCATTGATTATAA+TGG | + | chr2.1:41132105-41132124 | MS.gene90553:CDS | 30.0% |
! | CTTATTTCTTTATTCCGTAC+AGG | + | chr2.1:41130536-41130555 | MS.gene90553:intron | 30.0% |
! | TATGTAAAAAGCAGGGTTTT+GGG | + | chr2.1:41130481-41130500 | MS.gene90553:intron | 30.0% |
! | TTATGTAAAAAGCAGGGTTT+TGG | + | chr2.1:41130480-41130499 | MS.gene90553:intron | 30.0% |
!! | TCTAATTCTTGCTGTTACTA+AGG | + | chr2.1:41131146-41131165 | MS.gene90553:intron | 30.0% |
AGAAGCTAACAAATCTGCAA+AGG | - | chr2.1:41130733-41130752 | None:intergenic | 35.0% | |
AGAATAGTATGATCAGTGAC+TGG | + | chr2.1:41130309-41130328 | MS.gene90553:intron | 35.0% | |
AGAGAAGACTAATATCGTGA+TGG | - | chr2.1:41130694-41130713 | None:intergenic | 35.0% | |
AGAGTTCTACAAAATAGAGC+TGG | + | chr2.1:41131975-41131994 | MS.gene90553:CDS | 35.0% | |
AGTGAATTGTGAAGATTCCT+TGG | - | chr2.1:41130386-41130405 | None:intergenic | 35.0% | |
ATAGCCATAAGGAGTAGATT+CGG | - | chr2.1:41132030-41132049 | None:intergenic | 35.0% | |
ATGGCTATAACAAACAGGAA+AGG | + | chr2.1:41132042-41132061 | MS.gene90553:CDS | 35.0% | |
ATGTAAAATTGGAGGTGAGT+GGG | + | chr2.1:41131083-41131102 | MS.gene90553:intron | 35.0% | |
ATTTATGAGCGTTATGAGAC+TGG | + | chr2.1:41130822-41130841 | MS.gene90553:intron | 35.0% | |
CCAGAATATCAATGTCATTC+AGG | + | chr2.1:41131900-41131919 | MS.gene90553:CDS | 35.0% | |
CCTGAATGACATTGATATTC+TGG | - | chr2.1:41131903-41131922 | None:intergenic | 35.0% | |
GAATCTTCACAATTCACTCT+TGG | + | chr2.1:41130388-41130407 | MS.gene90553:CDS | 35.0% | |
GAGTTCTACAAAATAGAGCT+GGG | + | chr2.1:41131976-41131995 | MS.gene90553:CDS | 35.0% | |
GTATATCATTTCGCAGAACA+AGG | + | chr2.1:41131804-41131823 | MS.gene90553:intron | 35.0% | |
TATGTAAAATTGGAGGTGAG+TGG | + | chr2.1:41131082-41131101 | MS.gene90553:intron | 35.0% | |
TCCTTATGGCTATAACAAAC+AGG | + | chr2.1:41132037-41132056 | MS.gene90553:CDS | 35.0% | |
TCTCTGGTATGTAAAATTGG+AGG | + | chr2.1:41131075-41131094 | MS.gene90553:intron | 35.0% | |
TGGCTATAACAAACAGGAAA+GGG | + | chr2.1:41132043-41132062 | MS.gene90553:CDS | 35.0% | |
! | ATTTGTTGGGTTTACCTCAA+AGG | - | chr2.1:41130422-41130441 | None:intergenic | 35.0% |
! | TAGCTGGAATGGAATTTGTT+GGG | - | chr2.1:41132083-41132102 | None:intergenic | 35.0% |
!! | ATCTATCTGTGATTTGTTCG+TGG | + | chr2.1:41131186-41131205 | MS.gene90553:intron | 35.0% |
!! | CACGATATTAGTCTTCTCTT+TGG | + | chr2.1:41130695-41130714 | MS.gene90553:intron | 35.0% |
!! | GGTTGATAAGAAAAACGAGA+AGG | + | chr2.1:41131921-41131940 | MS.gene90553:CDS | 35.0% |
!! | TCCTGTTTGTTATAGCCATA+AGG | - | chr2.1:41132041-41132060 | None:intergenic | 35.0% |
!! | TTTGTTCTAGGAACGTGTTA+AGG | + | chr2.1:41130345-41130364 | MS.gene90553:intron | 35.0% |
!!! | ATAGGCTAGCTTTTTTGACA+TGG | + | chr2.1:41131779-41131798 | MS.gene90553:intron | 35.0% |
ACATGAAAAAATGAGGGTCG+AGG | - | chr2.1:41131710-41131729 | None:intergenic | 40.0% | |
AGACTGGTGTACATCTATGA+TGG | + | chr2.1:41130838-41130857 | MS.gene90553:intron | 40.0% | |
CATGAAAAAATGAGGGTCGA+GGG | - | chr2.1:41131709-41131728 | None:intergenic | 40.0% | |
GACTATCCAAATTCCACTCT+TGG | + | chr2.1:41131614-41131633 | MS.gene90553:intron | 40.0% | |
GGCTATAACAAACAGGAAAG+GGG | + | chr2.1:41132044-41132063 | MS.gene90553:CDS | 40.0% | |
GTAGCTGGAATGGAATTTGT+TGG | - | chr2.1:41132084-41132103 | None:intergenic | 40.0% | |
GTATCCGAATCTACTCCTTA+TGG | + | chr2.1:41132023-41132042 | MS.gene90553:CDS | 40.0% | |
TCAATATCACCACCAAGTTC+TGG | - | chr2.1:41131392-41131411 | None:intergenic | 40.0% | |
TGTAAAATTGGAGGTGAGTG+GGG | + | chr2.1:41131084-41131103 | MS.gene90553:intron | 40.0% | |
! | TAATGGTGAAACTAGCTTGG+TGG | + | chr2.1:41132122-41132141 | MS.gene90553:CDS | 40.0% |
! | TATTCCGTACAGGGTTTTCA+AGG | + | chr2.1:41130546-41130565 | MS.gene90553:intron | 40.0% |
!! | ACTTGGTGGTGATATTGACT+TGG | + | chr2.1:41131394-41131413 | MS.gene90553:intron | 40.0% |
!! | GTTTTGAGCTTGTGTTGGAA+TGG | - | chr2.1:41130625-41130644 | None:intergenic | 40.0% |
!! | TCTTGCTGTTACTAAGGAGA+GGG | + | chr2.1:41131152-41131171 | MS.gene90553:intron | 40.0% |
!! | TGGAATGGAATTTGTTGGGT+AGG | - | chr2.1:41132079-41132098 | None:intergenic | 40.0% |
!! | TTCTTGCTGTTACTAAGGAG+AGG | + | chr2.1:41131151-41131170 | MS.gene90553:intron | 40.0% |
AGAGCAAGACAAAACCTTCC+CGG | - | chr2.1:41131287-41131306 | None:intergenic | 45.0% | |
AGATACTCTCCATCATCGCA+TGG | - | chr2.1:41131213-41131232 | None:intergenic | 45.0% | |
AGCTCAAAACCAAGCACTAG+AGG | + | chr2.1:41130635-41130654 | MS.gene90553:CDS | 45.0% | |
CAAAACCAAGCACTAGAGGT+CGG | + | chr2.1:41130639-41130658 | MS.gene90553:intron | 45.0% | |
CTGAGGATACTGTGTTCTTC+CGG | + | chr2.1:41131265-41131284 | MS.gene90553:intron | 45.0% | |
GATTCGGATACGCATATGTC+AGG | - | chr2.1:41132014-41132033 | None:intergenic | 45.0% | |
TCAATGAACGTTGGTGTAGC+TGG | - | chr2.1:41132099-41132118 | None:intergenic | 45.0% | |
TCATCATCGCTGAAGGAAAC+CGG | - | chr2.1:41130597-41130616 | None:intergenic | 45.0% | |
TCTGCCTTGAAAACCCTGTA+CGG | - | chr2.1:41130553-41130572 | None:intergenic | 45.0% | |
TGAGGATACTGTGTTCTTCC+GGG | + | chr2.1:41131266-41131285 | MS.gene90553:intron | 45.0% | |
TGTGCAAGTACACAAGTCTC+TGG | + | chr2.1:41131059-41131078 | MS.gene90553:intron | 45.0% | |
TTCGCAGAACAAGGCTAGAA+TGG | + | chr2.1:41131813-41131832 | MS.gene90553:intron | 45.0% | |
! | GAGAAGGTCTATTTTCGGCA+GGG | + | chr2.1:41131937-41131956 | MS.gene90553:CDS | 45.0% |
! | TTTTCACAGAAGCCTGACCA+TGG | - | chr2.1:41130964-41130983 | None:intergenic | 45.0% |
!!! | GCTTGGTTTTGAGCTTGTGT+TGG | - | chr2.1:41130630-41130649 | None:intergenic | 45.0% |
!!! | TAAAAAGCAGGGTTTTGGGC+AGG | + | chr2.1:41130485-41130504 | MS.gene90553:intron | 45.0% |
AAGCACGCAGGTTTGTCGAA+TGG | + | chr2.1:41131118-41131137 | MS.gene90553:intron | 50.0% | |
ACAAAATAGAGCTGGGTGCC+TGG | + | chr2.1:41131983-41132002 | MS.gene90553:CDS | 50.0% | |
CCATATGATTGGGCAAGCTG+AGG | + | chr2.1:41131248-41131267 | MS.gene90553:intron | 50.0% | |
CCTCAGCTTGCCCAATCATA+TGG | - | chr2.1:41131251-41131270 | None:intergenic | 50.0% | |
CGCATATGTCAGGCAAATCC+AGG | - | chr2.1:41132004-41132023 | None:intergenic | 50.0% | |
GAACGTTGGTGTAGCTGGAA+TGG | - | chr2.1:41132094-41132113 | None:intergenic | 50.0% | |
GATACTGTGTTCTTCCGGGA+AGG | + | chr2.1:41131270-41131289 | MS.gene90553:intron | 50.0% | |
GGCATCTTCATCATCGCTGA+AGG | - | chr2.1:41130604-41130623 | None:intergenic | 50.0% | |
GTGTCAGCATGCATTTCCCT+TGG | + | chr2.1:41132144-41132163 | MS.gene90553:CDS | 50.0% | |
GTTCTGGTGCAAACCGGAAA+AGG | - | chr2.1:41131376-41131395 | None:intergenic | 50.0% | |
! | AGGTCTATTTTCGGCAGGGT+TGG | + | chr2.1:41131941-41131960 | MS.gene90553:CDS | 50.0% |
! | CACCAAGTTCTGGTGCAAAC+CGG | - | chr2.1:41131382-41131401 | None:intergenic | 50.0% |
! | CGAGAAGGTCTATTTTCGGC+AGG | + | chr2.1:41131936-41131955 | MS.gene90553:CDS | 50.0% |
! | TTCCGGTTTGCACCAGAACT+TGG | + | chr2.1:41131377-41131396 | MS.gene90553:intron | 50.0% |
! | TTTCAAGGCAGAAGTGCAGC+TGG | + | chr2.1:41130561-41130580 | MS.gene90553:CDS | 50.0% |
!! | TCTTGGTGCTCAGTCCTTTG+AGG | + | chr2.1:41130405-41130424 | MS.gene90553:CDS | 50.0% |
CCAAGCACTAGAGGTCGGAA+AGG | + | chr2.1:41130644-41130663 | MS.gene90553:intron | 55.0% | |
CCTTTCCGACCTCTAGTGCT+TGG | - | chr2.1:41130647-41130666 | None:intergenic | 55.0% | |
CGGTTTGCACCAGAACTTGG+TGG | + | chr2.1:41131380-41131399 | MS.gene90553:intron | 55.0% | |
GAGTGCTTTGCAAAGCACGC+AGG | + | chr2.1:41131106-41131125 | MS.gene90553:intron | 55.0% | |
GTTCGTGGACCATGCGATGA+TGG | + | chr2.1:41131201-41131220 | MS.gene90553:intron | 55.0% | |
TGCAGCTGGAGCTGATAGTC+CGG | + | chr2.1:41130575-41130594 | MS.gene90553:CDS | 55.0% | |
TTTCAACGCAGCTCCTGCCA+TGG | + | chr2.1:41130944-41130963 | MS.gene90553:intron | 55.0% | |
CACAGAAGCCTGACCATGGC+AGG | - | chr2.1:41130960-41130979 | None:intergenic | 60.0% | |
ACGCAGCTCCTGCCATGGTC+AGG | + | chr2.1:41130949-41130968 | MS.gene90553:intron | 65.0% | |
GGAGCGATCTACGCGCTCCA+AGG | + | chr2.1:41130366-41130385 | MS.gene90553:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.1 | gene | 41130239 | 41132173 | 41130239 | ID=MS.gene90553 |
chr2.1 | mRNA | 41130239 | 41132173 | 41130239 | ID=MS.gene90553.t1;Parent=MS.gene90553 |
chr2.1 | exon | 41130239 | 41130265 | 41130239 | ID=MS.gene90553.t1.exon1;Parent=MS.gene90553.t1 |
chr2.1 | CDS | 41130239 | 41130265 | 41130239 | ID=cds.MS.gene90553.t1;Parent=MS.gene90553.t1 |
chr2.1 | exon | 41130355 | 41130426 | 41130355 | ID=MS.gene90553.t1.exon2;Parent=MS.gene90553.t1 |
chr2.1 | CDS | 41130355 | 41130426 | 41130355 | ID=cds.MS.gene90553.t1;Parent=MS.gene90553.t1 |
chr2.1 | exon | 41130558 | 41130656 | 41130558 | ID=MS.gene90553.t1.exon3;Parent=MS.gene90553.t1 |
chr2.1 | CDS | 41130558 | 41130656 | 41130558 | ID=cds.MS.gene90553.t1;Parent=MS.gene90553.t1 |
chr2.1 | exon | 41131820 | 41132173 | 41131820 | ID=MS.gene90553.t1.exon4;Parent=MS.gene90553.t1 |
chr2.1 | CDS | 41131820 | 41132173 | 41131820 | ID=cds.MS.gene90553.t1;Parent=MS.gene90553.t1 |
Gene Sequence |
Protein sequence |