Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90701.t1 | AEI59122.1 | 98.5 | 339 | 5 | 0 | 1 | 339 | 1 | 339 | 5.10E-194 | 686.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90701.t1 | Q9XES5 | 75.8 | 326 | 79 | 0 | 1 | 326 | 1 | 326 | 5.4e-152 | 538.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90701.t1 | F8UWD2 | 98.5 | 339 | 5 | 0 | 1 | 339 | 1 | 339 | 3.7e-194 | 686.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene90701 | MS.gene009245 | PPI |
| MS.gene058751 | MS.gene90701 | PPI |
| MS.gene058752 | MS.gene90701 | PPI |
| MS.gene90701 | MS.gene50830 | PPI |
| MS.gene50852 | MS.gene90701 | PPI |
| MS.gene50831 | MS.gene90701 | PPI |
| MS.gene50853 | MS.gene90701 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90701.t1 | MTR_1g022440 | 95.280 | 339 | 16 | 0 | 1 | 339 | 1 | 339 | 0.0 | 669 |
| MS.gene90701.t1 | MTR_1g022445 | 79.817 | 327 | 66 | 0 | 1 | 327 | 1 | 327 | 0.0 | 563 |
| MS.gene90701.t1 | MTR_7g074850 | 47.205 | 322 | 166 | 3 | 8 | 325 | 8 | 329 | 4.29e-104 | 308 |
| MS.gene90701.t1 | MTR_7g074820 | 47.706 | 327 | 157 | 4 | 8 | 325 | 8 | 329 | 1.02e-102 | 305 |
| MS.gene90701.t1 | MTR_7g074880 | 46.417 | 321 | 167 | 4 | 8 | 325 | 8 | 326 | 2.23e-100 | 299 |
| MS.gene90701.t1 | MTR_7g074730 | 45.092 | 326 | 166 | 4 | 8 | 325 | 8 | 328 | 5.88e-99 | 295 |
| MS.gene90701.t1 | MTR_7g074710 | 44.000 | 325 | 169 | 4 | 8 | 325 | 8 | 326 | 1.79e-96 | 289 |
| MS.gene90701.t1 | MTR_4g092080 | 42.462 | 325 | 176 | 4 | 9 | 324 | 15 | 337 | 2.52e-96 | 289 |
| MS.gene90701.t1 | MTR_4g023730 | 42.724 | 323 | 181 | 2 | 7 | 325 | 7 | 329 | 2.21e-93 | 281 |
| MS.gene90701.t1 | MTR_4g081440 | 41.935 | 341 | 169 | 7 | 9 | 328 | 25 | 357 | 2.70e-87 | 266 |
| MS.gene90701.t1 | MTR_4g081440 | 42.274 | 343 | 164 | 8 | 9 | 328 | 21 | 352 | 2.94e-87 | 266 |
| MS.gene90701.t1 | MTR_3g005210 | 41.433 | 321 | 179 | 5 | 5 | 322 | 3 | 317 | 2.15e-85 | 261 |
| MS.gene90701.t1 | MTR_3g005170 | 39.628 | 323 | 186 | 5 | 3 | 322 | 5 | 321 | 1.23e-80 | 249 |
| MS.gene90701.t1 | MTR_7g074870 | 43.750 | 288 | 158 | 3 | 40 | 325 | 3 | 288 | 2.09e-79 | 244 |
| MS.gene90701.t1 | MTR_8g062440 | 41.818 | 330 | 178 | 7 | 1 | 325 | 1 | 321 | 7.63e-79 | 244 |
| MS.gene90701.t1 | MTR_3g005170 | 41.786 | 280 | 155 | 4 | 3 | 279 | 5 | 279 | 2.90e-77 | 238 |
| MS.gene90701.t1 | MTR_8g062440 | 41.692 | 331 | 178 | 8 | 1 | 325 | 1 | 322 | 6.23e-77 | 239 |
| MS.gene90701.t1 | MTR_8g062110 | 39.820 | 334 | 179 | 8 | 1 | 325 | 2 | 322 | 1.51e-76 | 238 |
| MS.gene90701.t1 | MTR_8g062110 | 39.820 | 334 | 179 | 8 | 1 | 325 | 11 | 331 | 2.41e-76 | 238 |
| MS.gene90701.t1 | MTR_2g101330 | 38.110 | 328 | 194 | 7 | 8 | 332 | 5 | 326 | 2.65e-76 | 238 |
| MS.gene90701.t1 | MTR_8g062440 | 44.718 | 284 | 144 | 6 | 1 | 279 | 1 | 276 | 5.05e-75 | 234 |
| MS.gene90701.t1 | MTR_4g077100 | 41.538 | 325 | 171 | 8 | 6 | 322 | 9 | 322 | 1.16e-74 | 233 |
| MS.gene90701.t1 | MTR_5g056600 | 38.438 | 320 | 189 | 6 | 9 | 325 | 5 | 319 | 5.30e-74 | 231 |
| MS.gene90701.t1 | MTR_4g006940 | 41.358 | 324 | 176 | 9 | 6 | 326 | 15 | 327 | 3.29e-73 | 230 |
| MS.gene90701.t1 | MTR_4g077130 | 39.264 | 326 | 183 | 6 | 3 | 322 | 4 | 320 | 9.15e-73 | 228 |
| MS.gene90701.t1 | MTR_4g077100 | 44.444 | 279 | 143 | 6 | 6 | 279 | 9 | 280 | 2.86e-72 | 226 |
| MS.gene90701.t1 | MTR_8g062110 | 41.667 | 288 | 147 | 7 | 1 | 279 | 2 | 277 | 1.02e-71 | 224 |
| MS.gene90701.t1 | MTR_8g062110 | 41.667 | 288 | 147 | 7 | 1 | 279 | 2 | 277 | 1.48e-71 | 224 |
| MS.gene90701.t1 | MTR_2g104960 | 41.231 | 325 | 173 | 12 | 6 | 325 | 18 | 329 | 2.29e-71 | 225 |
| MS.gene90701.t1 | MTR_5g072620 | 38.769 | 325 | 190 | 7 | 4 | 325 | 1 | 319 | 1.53e-70 | 223 |
| MS.gene90701.t1 | MTR_3g031650 | 37.231 | 325 | 195 | 6 | 4 | 325 | 1 | 319 | 1.54e-67 | 215 |
| MS.gene90701.t1 | MTR_4g006940 | 43.885 | 278 | 140 | 9 | 6 | 279 | 15 | 280 | 4.41e-67 | 212 |
| MS.gene90701.t1 | MTR_4g006940 | 43.885 | 278 | 140 | 9 | 6 | 279 | 15 | 280 | 4.41e-67 | 212 |
| MS.gene90701.t1 | MTR_4g009040 | 37.231 | 325 | 189 | 10 | 5 | 325 | 10 | 323 | 1.43e-65 | 210 |
| MS.gene90701.t1 | MTR_4g009040 | 36.778 | 329 | 189 | 11 | 5 | 325 | 10 | 327 | 3.05e-63 | 204 |
| MS.gene90701.t1 | MTR_3g005170 | 34.877 | 324 | 171 | 6 | 2 | 322 | 4 | 290 | 5.38e-62 | 200 |
| MS.gene90701.t1 | MTR_3g031650 | 38.768 | 276 | 161 | 5 | 4 | 276 | 1 | 271 | 5.48e-62 | 199 |
| MS.gene90701.t1 | MTR_2g013230 | 37.202 | 336 | 190 | 8 | 8 | 325 | 8 | 340 | 1.35e-59 | 195 |
| MS.gene90701.t1 | MTR_4g009690 | 35.294 | 323 | 197 | 8 | 5 | 325 | 10 | 322 | 9.71e-59 | 192 |
| MS.gene90701.t1 | MTR_2g013250 | 36.228 | 334 | 192 | 8 | 8 | 323 | 7 | 337 | 6.10e-58 | 191 |
| MS.gene90701.t1 | MTR_4g009690 | 35.802 | 324 | 195 | 9 | 5 | 325 | 10 | 323 | 7.09e-58 | 190 |
| MS.gene90701.t1 | MTR_2g028620 | 33.934 | 333 | 197 | 11 | 6 | 327 | 8 | 328 | 1.68e-54 | 181 |
| MS.gene90701.t1 | MTR_2g013260 | 35.329 | 334 | 195 | 8 | 8 | 323 | 8 | 338 | 2.34e-51 | 174 |
| MS.gene90701.t1 | MTR_2g028620 | 35.461 | 282 | 160 | 10 | 6 | 276 | 8 | 278 | 1.24e-48 | 166 |
| MS.gene90701.t1 | MTR_7g117190 | 32.738 | 336 | 206 | 7 | 8 | 325 | 7 | 340 | 3.43e-48 | 165 |
| MS.gene90701.t1 | MTR_2g013260 | 36.552 | 290 | 165 | 7 | 8 | 279 | 8 | 296 | 3.24e-46 | 159 |
| MS.gene90701.t1 | MTR_7g117190 | 34.146 | 287 | 171 | 6 | 8 | 276 | 7 | 293 | 3.98e-42 | 149 |
| MS.gene90701.t1 | MTR_8g062110 | 33.054 | 239 | 138 | 8 | 96 | 325 | 11 | 236 | 2.70e-34 | 126 |
| MS.gene90701.t1 | MTR_2g013230 | 33.198 | 247 | 144 | 8 | 97 | 325 | 7 | 250 | 4.79e-30 | 115 |
| MS.gene90701.t1 | MTR_8g062110 | 34.197 | 193 | 106 | 7 | 96 | 279 | 11 | 191 | 1.33e-29 | 112 |
| MS.gene90701.t1 | MTR_5g029990 | 28.165 | 316 | 185 | 11 | 5 | 305 | 9 | 297 | 2.08e-29 | 114 |
| MS.gene90701.t1 | MTR_0164s0070 | 41.270 | 126 | 73 | 1 | 8 | 132 | 5 | 130 | 7.59e-29 | 110 |
| MS.gene90701.t1 | MTR_6g406250 | 29.297 | 256 | 161 | 9 | 8 | 253 | 55 | 300 | 7.28e-23 | 98.2 |
| MS.gene90701.t1 | MTR_2g013260 | 30.612 | 245 | 149 | 8 | 97 | 323 | 26 | 267 | 5.62e-22 | 94.4 |
| MS.gene90701.t1 | MTR_6g406250 | 28.774 | 212 | 141 | 5 | 8 | 213 | 55 | 262 | 5.29e-20 | 88.6 |
| MS.gene90701.t1 | MTR_7g117190 | 27.391 | 230 | 147 | 7 | 114 | 325 | 3 | 230 | 4.91e-19 | 85.1 |
| MS.gene90701.t1 | MTR_3g011130 | 36.134 | 119 | 69 | 4 | 99 | 213 | 30 | 145 | 3.09e-16 | 75.1 |
| MS.gene90701.t1 | MTR_0685s0030 | 29.091 | 165 | 107 | 4 | 161 | 322 | 2 | 159 | 4.48e-15 | 72.4 |
| MS.gene90701.t1 | MTR_3g101500 | 25.448 | 279 | 177 | 9 | 8 | 277 | 4 | 260 | 5.37e-14 | 72.0 |
| MS.gene90701.t1 | MTR_3g101500 | 26.437 | 261 | 165 | 9 | 8 | 263 | 4 | 242 | 6.13e-14 | 72.0 |
| MS.gene90701.t1 | MTR_0685s0030 | 31.092 | 119 | 79 | 2 | 161 | 279 | 2 | 117 | 5.28e-13 | 65.5 |
| MS.gene90701.t1 | MTR_8g062710 | 39.604 | 101 | 44 | 3 | 8 | 108 | 20 | 103 | 8.36e-13 | 65.1 |
| MS.gene90701.t1 | MTR_3g101500 | 29.474 | 190 | 113 | 7 | 8 | 196 | 4 | 173 | 3.96e-12 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90701.t1 | AT5G42800 | 71.166 | 326 | 94 | 0 | 1 | 326 | 1 | 326 | 2.04e-177 | 497 |
| MS.gene90701.t1 | AT4G35420 | 43.030 | 330 | 180 | 6 | 1 | 328 | 1 | 324 | 3.70e-91 | 275 |
| MS.gene90701.t1 | AT2G45400 | 42.769 | 325 | 179 | 3 | 8 | 325 | 40 | 364 | 3.09e-88 | 269 |
| MS.gene90701.t1 | AT1G61720 | 40.240 | 333 | 182 | 5 | 5 | 325 | 10 | 337 | 8.60e-87 | 265 |
| MS.gene90701.t1 | AT1G51410 | 41.176 | 323 | 181 | 5 | 6 | 325 | 7 | 323 | 4.81e-83 | 255 |
| MS.gene90701.t1 | AT1G09510 | 42.462 | 325 | 176 | 5 | 1 | 319 | 1 | 320 | 1.38e-82 | 253 |
| MS.gene90701.t1 | AT4G27250 | 40.059 | 337 | 176 | 9 | 3 | 318 | 8 | 339 | 1.27e-80 | 249 |
| MS.gene90701.t1 | AT4G27250 | 40.303 | 330 | 175 | 8 | 3 | 318 | 8 | 329 | 3.78e-79 | 245 |
| MS.gene90701.t1 | AT2G45400 | 44.245 | 278 | 148 | 3 | 8 | 278 | 40 | 317 | 1.25e-77 | 241 |
| MS.gene90701.t1 | AT5G19440 | 40.123 | 324 | 181 | 7 | 6 | 324 | 8 | 323 | 1.07e-76 | 238 |
| MS.gene90701.t1 | AT1G66800 | 40.367 | 327 | 176 | 8 | 1 | 319 | 1 | 316 | 4.98e-76 | 236 |
| MS.gene90701.t1 | AT2G45400 | 39.935 | 308 | 179 | 3 | 23 | 325 | 1 | 307 | 3.90e-72 | 226 |
| MS.gene90701.t1 | AT1G15950 | 40.000 | 325 | 181 | 10 | 4 | 325 | 9 | 322 | 3.26e-71 | 225 |
| MS.gene90701.t1 | AT1G15950 | 40.000 | 325 | 181 | 10 | 4 | 325 | 9 | 322 | 3.26e-71 | 225 |
| MS.gene90701.t1 | AT1G09500 | 37.838 | 333 | 183 | 9 | 1 | 319 | 1 | 323 | 4.45e-70 | 221 |
| MS.gene90701.t1 | AT5G58490 | 37.152 | 323 | 194 | 6 | 6 | 325 | 7 | 323 | 5.91e-70 | 221 |
| MS.gene90701.t1 | AT1G15950 | 40.385 | 312 | 173 | 9 | 4 | 312 | 9 | 310 | 8.45e-70 | 221 |
| MS.gene90701.t1 | AT1G09490 | 36.556 | 331 | 187 | 7 | 1 | 319 | 1 | 320 | 9.66e-70 | 221 |
| MS.gene90701.t1 | AT2G02400 | 38.066 | 331 | 178 | 11 | 6 | 325 | 4 | 318 | 1.55e-69 | 220 |
| MS.gene90701.t1 | AT1G09480 | 37.117 | 326 | 192 | 7 | 1 | 319 | 1 | 320 | 3.72e-69 | 219 |
| MS.gene90701.t1 | AT1G68540 | 37.888 | 322 | 188 | 7 | 10 | 325 | 6 | 321 | 5.56e-69 | 219 |
| MS.gene90701.t1 | AT1G09480 | 37.117 | 326 | 192 | 7 | 1 | 319 | 48 | 367 | 1.20e-68 | 219 |
| MS.gene90701.t1 | AT1G09500 | 39.716 | 282 | 153 | 6 | 1 | 274 | 1 | 273 | 2.74e-68 | 215 |
| MS.gene90701.t1 | AT1G80820 | 38.739 | 333 | 190 | 10 | 8 | 337 | 8 | 329 | 3.14e-68 | 217 |
| MS.gene90701.t1 | AT2G33590 | 38.318 | 321 | 186 | 8 | 8 | 325 | 9 | 320 | 4.11e-66 | 211 |
| MS.gene90701.t1 | AT1G15950 | 41.637 | 281 | 152 | 8 | 4 | 282 | 9 | 279 | 5.04e-65 | 207 |
| MS.gene90701.t1 | AT1G25460 | 37.117 | 326 | 183 | 9 | 10 | 325 | 6 | 319 | 1.93e-64 | 207 |
| MS.gene90701.t1 | AT1G15950 | 41.877 | 277 | 149 | 8 | 5 | 279 | 10 | 276 | 2.66e-64 | 205 |
| MS.gene90701.t1 | AT1G15950 | 41.516 | 277 | 150 | 8 | 5 | 279 | 10 | 276 | 1.48e-63 | 203 |
| MS.gene90701.t1 | AT1G80820 | 41.606 | 274 | 148 | 8 | 8 | 279 | 8 | 271 | 4.57e-61 | 196 |
| MS.gene90701.t1 | AT2G33600 | 37.695 | 321 | 188 | 9 | 8 | 325 | 9 | 320 | 5.01e-61 | 198 |
| MS.gene90701.t1 | AT1G76470 | 34.954 | 329 | 206 | 7 | 3 | 328 | 2 | 325 | 3.52e-58 | 191 |
| MS.gene90701.t1 | AT2G45400 | 44.907 | 216 | 112 | 3 | 8 | 216 | 40 | 255 | 6.82e-57 | 185 |
| MS.gene90701.t1 | AT1G09500 | 35.254 | 295 | 167 | 9 | 39 | 319 | 5 | 289 | 1.56e-52 | 175 |
| MS.gene90701.t1 | AT1G09490 | 33.218 | 289 | 170 | 7 | 43 | 319 | 12 | 289 | 3.66e-51 | 172 |
| MS.gene90701.t1 | AT1G15950 | 35.652 | 230 | 139 | 7 | 99 | 325 | 1 | 224 | 1.37e-38 | 137 |
| MS.gene90701.t1 | AT1G68540 | 35.909 | 220 | 130 | 6 | 111 | 325 | 1 | 214 | 3.89e-37 | 133 |
| MS.gene90701.t1 | AT2G23910 | 28.315 | 279 | 181 | 10 | 9 | 281 | 11 | 276 | 5.41e-30 | 115 |
| MS.gene90701.t1 | AT2G23910 | 28.520 | 277 | 179 | 10 | 9 | 279 | 11 | 274 | 6.85e-30 | 115 |
| MS.gene90701.t1 | AT2G23910 | 28.520 | 277 | 179 | 10 | 9 | 279 | 11 | 274 | 1.37e-29 | 115 |
| MS.gene90701.t1 | AT4G30470 | 29.433 | 282 | 175 | 11 | 9 | 282 | 11 | 276 | 6.45e-29 | 113 |
| MS.gene90701.t1 | AT5G14700 | 29.841 | 315 | 186 | 13 | 8 | 300 | 55 | 356 | 1.76e-24 | 102 |
| MS.gene90701.t1 | AT2G23910 | 28.390 | 236 | 150 | 10 | 50 | 279 | 18 | 240 | 7.98e-21 | 90.9 |
| MS.gene90701.t1 | AT5G14700 | 31.343 | 201 | 120 | 6 | 8 | 196 | 55 | 249 | 3.32e-20 | 89.7 |
| MS.gene90701.t1 | AT4G33360 | 26.354 | 277 | 177 | 10 | 8 | 277 | 15 | 271 | 1.00e-18 | 85.5 |
| MS.gene90701.t1 | AT4G33360 | 26.354 | 277 | 177 | 10 | 8 | 277 | 3 | 259 | 1.98e-18 | 85.1 |
| MS.gene90701.t1 | AT4G33360 | 26.354 | 277 | 177 | 10 | 8 | 277 | 15 | 271 | 2.23e-18 | 85.1 |
Find 75 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGTATCTCCCTTGGGCTTT+AGG | 0.144858 | 1.4:-1835798 | None:intergenic |
| TGTATCTCCCTTGGGCTTTA+GGG | 0.211176 | 1.4:-1835797 | None:intergenic |
| GGCATTGAAGGCATAATAAA+TGG | 0.276805 | 1.4:-1835302 | None:intergenic |
| TTTGTAGGGACATTGAATTC+TGG | 0.292334 | 1.4:-1835879 | None:intergenic |
| ATAGAAACCTGCAGAGAAAA+AGG | 0.294956 | 1.4:+1836341 | MS.gene90701:CDS |
| CACATCATCAGCTGGAACTT+TGG | 0.303498 | 1.4:+1828591 | MS.gene90701:CDS |
| TTTCATCAATGACAGACTTT+TGG | 0.321082 | 1.4:-1828627 | None:intergenic |
| ATTATTCCACCTCTTGTTGT+TGG | 0.325048 | 1.4:+1835278 | MS.gene90701:CDS |
| ACCGGAGTCTCTTCAACTTT+AGG | 0.329685 | 1.4:-1836371 | None:intergenic |
| TTAATAATTTCCAGTTCATC+TGG | 0.331050 | 1.4:-1836245 | None:intergenic |
| GTTTGCGTCACAGGGGCTTC+AGG | 0.339012 | 1.4:+1826614 | MS.gene90701:CDS |
| CAAATAGCAAACTGTCTCTT+TGG | 0.347121 | 1.4:+1826873 | MS.gene90701:CDS |
| ATTTGGAAAACTTACTTTGT+AGG | 0.353655 | 1.4:-1835894 | None:intergenic |
| TTGTAGGGACATTGAATTCT+GGG | 0.360933 | 1.4:-1835878 | None:intergenic |
| TCCATGCTTCTTGTTCTGCC+AGG | 0.365430 | 1.4:-1835220 | None:intergenic |
| TCTAGTAATCCGTTTATTGT+AGG | 0.372838 | 1.4:-1828520 | None:intergenic |
| TTCTTCATGGTATCATTAAC+CGG | 0.383013 | 1.4:-1836389 | None:intergenic |
| CTGTCATTGATGAAACTTGC+TGG | 0.395479 | 1.4:+1828635 | MS.gene90701:CDS |
| AACAACAAGAGGTGGAATAA+TGG | 0.398005 | 1.4:-1835276 | None:intergenic |
| AAAGAAGGTGAAGCATTTGT+TGG | 0.407170 | 1.4:+1826838 | MS.gene90701:CDS |
| CATATATACCTCAGGGTCCT+TGG | 0.409580 | 1.4:-1826987 | None:intergenic |
| CTTCAGGTTTCATCGGGTCG+TGG | 0.418602 | 1.4:+1826630 | MS.gene90701:CDS |
| TTTGGAAAACTTACTTTGTA+GGG | 0.420860 | 1.4:-1835893 | None:intergenic |
| CAAGGATATCCCAGATGAAC+TGG | 0.423075 | 1.4:+1836235 | MS.gene90701:CDS |
| TCAGAAACAGTTTGCGTCAC+AGG | 0.428216 | 1.4:+1826605 | MS.gene90701:CDS |
| GTCATATATGTTAGGAAATG+AGG | 0.433023 | 1.4:+1835695 | MS.gene90701:intron |
| GTGATAAACCCTACAATAAA+CGG | 0.433973 | 1.4:+1828511 | MS.gene90701:CDS |
| CCATGCTTCTTGTTCTGCCA+GGG | 0.444527 | 1.4:-1835219 | None:intergenic |
| CTAGTAATCCGTTTATTGTA+GGG | 0.449679 | 1.4:-1828519 | None:intergenic |
| ACAGGGGCTTCAGGTTTCAT+CGG | 0.471091 | 1.4:+1826623 | MS.gene90701:CDS |
| ATTAGACTCGGTGGCATTGA+AGG | 0.477159 | 1.4:-1835314 | None:intergenic |
| TCAAAGAAGATCACAGACTT+GGG | 0.479014 | 1.4:+1836275 | MS.gene90701:CDS |
| CAGGGGCTTCAGGTTTCATC+GGG | 0.480956 | 1.4:+1826624 | MS.gene90701:CDS |
| TTCAAAGAAGATCACAGACT+TGG | 0.483142 | 1.4:+1836274 | MS.gene90701:CDS |
| GAAGCTATTAAAGGGTGTAC+AGG | 0.495746 | 1.4:+1826929 | MS.gene90701:CDS |
| GGTCGTCTAAGTGGATGTAT+TGG | 0.504000 | 1.4:-1835743 | None:intergenic |
| AACAACATATGTATCTCCCT+TGG | 0.506214 | 1.4:-1835806 | None:intergenic |
| GTTATGAAACTTATTGAGCA+TGG | 0.513589 | 1.4:+1826656 | MS.gene90701:CDS |
| CGAGCCACCGTGCGCGACCC+AGG | 0.513759 | 1.4:+1826689 | MS.gene90701:CDS |
| AAGCATTTGTTGGAACTGCC+AGG | 0.513950 | 1.4:+1826848 | MS.gene90701:CDS |
| ACAACATATGTATCTCCCTT+GGG | 0.516246 | 1.4:-1835805 | None:intergenic |
| TAATAATTTCCAGTTCATCT+GGG | 0.535409 | 1.4:-1836244 | None:intergenic |
| CAGAAACAGTTTGCGTCACA+GGG | 0.536679 | 1.4:+1826606 | MS.gene90701:CDS |
| TATGTATGGACCTGTGATAA+GGG | 0.537223 | 1.4:-1835348 | None:intergenic |
| GTATGTATGGACCTGTGATA+AGG | 0.544965 | 1.4:-1835349 | None:intergenic |
| TAGAGTCAAGATGACTGGTT+GGG | 0.547339 | 1.4:+1828678 | MS.gene90701:CDS |
| AACCAGTCATCTTGACTCTA+CGG | 0.547560 | 1.4:-1828675 | None:intergenic |
| TGCCGTAGAGTCAAGATGAC+TGG | 0.553486 | 1.4:+1828673 | MS.gene90701:CDS |
| TCCTAAAGTTGAAGAGACTC+CGG | 0.557787 | 1.4:+1836370 | MS.gene90701:CDS |
| CAAAGAAGATCACAGACTTG+GGG | 0.561206 | 1.4:+1836276 | MS.gene90701:CDS |
| TAATGCAGATAACATAAAGA+AGG | 0.562211 | 1.4:+1826823 | MS.gene90701:intron |
| ACTGCTCTTTCCCTTATCAC+AGG | 0.563844 | 1.4:+1835338 | MS.gene90701:CDS |
| GAAAACTACCCTCTTCACTA+AGG | 0.567285 | 1.4:-1826904 | None:intergenic |
| AGCTTAGAAGACATGTTCAC+AGG | 0.567804 | 1.4:+1836314 | MS.gene90701:CDS |
| CAAGACAAAGGTCGTCTAAG+TGG | 0.568243 | 1.4:-1835752 | None:intergenic |
| GACAGTTTGCTATTTGCACC+TGG | 0.575756 | 1.4:-1826866 | None:intergenic |
| CCCTGGCAGAACAAGAAGCA+TGG | 0.576540 | 1.4:+1835219 | MS.gene90701:CDS |
| GAAGGCTGACCTTAGTGAAG+AGG | 0.581029 | 1.4:+1826895 | MS.gene90701:CDS |
| TAGCAAACTGTCTCTTTGGA+AGG | 0.583532 | 1.4:+1826877 | MS.gene90701:CDS |
| ATAAGAACCTGGGTCGCGCA+CGG | 0.588426 | 1.4:-1826696 | None:intergenic |
| AATGGACCAACAACAAGAGG+TGG | 0.603924 | 1.4:-1835284 | None:intergenic |
| AAGGCTGACCTTAGTGAAGA+GGG | 0.609366 | 1.4:+1826896 | MS.gene90701:CDS |
| GTAGAGTCAAGATGACTGGT+TGG | 0.611388 | 1.4:+1828677 | MS.gene90701:CDS |
| TTTGAGAACCCTAAAGCCCA+AGG | 0.614287 | 1.4:+1835789 | MS.gene90701:CDS |
| CATAATGAAAGCATGTGAGA+AGG | 0.614990 | 1.4:+1828543 | MS.gene90701:CDS |
| ATAAATGGACCAACAACAAG+AGG | 0.617465 | 1.4:-1835287 | None:intergenic |
| ATACATATGTTGTTCACATG+AGG | 0.626224 | 1.4:+1835815 | MS.gene90701:CDS |
| GAAATATATGAGCAAGACAA+AGG | 0.627090 | 1.4:-1835764 | None:intergenic |
| TCCTTGGACTCAAAATCCAT+AGG | 0.646498 | 1.4:-1826971 | None:intergenic |
| GAAAGAGCAGTGATTAGACT+CGG | 0.647789 | 1.4:-1835326 | None:intergenic |
| CATTACTCGATCATAAAGCA+AGG | 0.672832 | 1.4:+1835720 | MS.gene90701:CDS |
| TTGAGAACCCTAAAGCCCAA+GGG | 0.699043 | 1.4:+1835790 | MS.gene90701:CDS |
| AGAACCTGGGTCGCGCACGG+TGG | 0.699730 | 1.4:-1826693 | None:intergenic |
| AGAGCAGTGATTAGACTCGG+TGG | 0.702600 | 1.4:-1835323 | None:intergenic |
| AGAAACAGTTTGCGTCACAG+GGG | 0.735808 | 1.4:+1826607 | MS.gene90701:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 1826593 | 1836415 | 1826593 | ID=MS.gene90701 |
| chr1.4 | mRNA | 1826593 | 1836415 | 1826593 | ID=MS.gene90701.t1;Parent=MS.gene90701 |
| chr1.4 | exon | 1826593 | 1826710 | 1826593 | ID=MS.gene90701.t1.exon1;Parent=MS.gene90701.t1 |
| chr1.4 | CDS | 1826593 | 1826710 | 1826593 | ID=cds.MS.gene90701.t1;Parent=MS.gene90701.t1 |
| chr1.4 | exon | 1826831 | 1827000 | 1826831 | ID=MS.gene90701.t1.exon2;Parent=MS.gene90701.t1 |
| chr1.4 | CDS | 1826831 | 1827000 | 1826831 | ID=cds.MS.gene90701.t1;Parent=MS.gene90701.t1 |
| chr1.4 | exon | 1828505 | 1828699 | 1828505 | ID=MS.gene90701.t1.exon3;Parent=MS.gene90701.t1 |
| chr1.4 | CDS | 1828505 | 1828699 | 1828505 | ID=cds.MS.gene90701.t1;Parent=MS.gene90701.t1 |
| chr1.4 | exon | 1835200 | 1835359 | 1835200 | ID=MS.gene90701.t1.exon4;Parent=MS.gene90701.t1 |
| chr1.4 | CDS | 1835200 | 1835359 | 1835200 | ID=cds.MS.gene90701.t1;Parent=MS.gene90701.t1 |
| chr1.4 | exon | 1835709 | 1835901 | 1835709 | ID=MS.gene90701.t1.exon5;Parent=MS.gene90701.t1 |
| chr1.4 | CDS | 1835709 | 1835901 | 1835709 | ID=cds.MS.gene90701.t1;Parent=MS.gene90701.t1 |
| chr1.4 | exon | 1836232 | 1836415 | 1836232 | ID=MS.gene90701.t1.exon6;Parent=MS.gene90701.t1 |
| chr1.4 | CDS | 1836232 | 1836415 | 1836232 | ID=cds.MS.gene90701.t1;Parent=MS.gene90701.t1 |
| Gene Sequence |
| Protein sequence |
