AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene009245

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene009245.t1 MTR_3g005170 97.531 324 8 0 2 325 3 326 0.0 652
MS.gene009245.t1 MTR_3g005210 90.625 320 30 0 6 325 3 322 0.0 602
MS.gene009245.t1 MTR_3g005170 87.963 324 8 1 2 325 3 295 0.0 568
MS.gene009245.t1 MTR_3g005170 97.473 277 7 0 2 278 3 279 0.0 559
MS.gene009245.t1 MTR_8g062440 71.517 323 91 1 3 325 2 323 1.23e-174 487
MS.gene009245.t1 MTR_8g062110 70.769 325 94 1 1 325 10 333 1.03e-173 485
MS.gene009245.t1 MTR_8g062110 70.769 325 94 1 1 325 1 324 1.06e-173 484
MS.gene009245.t1 MTR_4g077100 67.692 325 105 0 1 325 3 327 1.71e-173 484
MS.gene009245.t1 MTR_8g062440 71.296 324 91 2 3 325 2 324 7.58e-173 482
MS.gene009245.t1 MTR_4g077130 67.385 325 106 0 1 325 1 325 5.27e-171 478
MS.gene009245.t1 MTR_4g077100 67.986 278 89 0 1 278 3 280 5.52e-147 415
MS.gene009245.t1 MTR_8g062110 70.863 278 80 1 1 278 1 277 6.35e-146 412
MS.gene009245.t1 MTR_8g062110 70.863 278 80 1 1 278 1 277 8.42e-146 412
MS.gene009245.t1 MTR_8g062440 65.705 312 98 2 3 306 2 312 5.81e-145 412
MS.gene009245.t1 MTR_8g062110 70.306 229 67 1 97 325 11 238 2.51e-118 341
MS.gene009245.t1 MTR_4g006940 50.316 316 148 6 7 320 15 323 8.16e-96 287
MS.gene009245.t1 MTR_5g072620 47.368 323 164 5 5 324 1 320 1.99e-94 283
MS.gene009245.t1 MTR_8g062110 70.330 182 53 1 97 278 11 191 2.21e-90 268
MS.gene009245.t1 MTR_2g104960 46.933 326 164 6 2 325 13 331 7.14e-90 272
MS.gene009245.t1 MTR_3g031650 42.857 322 178 5 5 323 1 319 1.34e-86 263
MS.gene009245.t1 MTR_2g101330 43.354 316 171 6 9 320 5 316 6.04e-85 259
MS.gene009245.t1 MTR_5g056600 41.250 320 177 7 10 323 5 319 3.80e-84 257
MS.gene009245.t1 MTR_4g006940 50.923 271 125 5 9 278 17 280 1.61e-81 249
MS.gene009245.t1 MTR_4g006940 50.923 271 125 5 9 278 17 280 1.61e-81 249
MS.gene009245.t1 MTR_1g022440 39.815 324 186 5 3 320 2 322 3.04e-81 250
MS.gene009245.t1 MTR_3g031650 44.815 270 143 5 5 271 1 267 5.57e-78 239
MS.gene009245.t1 MTR_4g009040 42.675 314 170 7 9 319 13 319 5.87e-78 241
MS.gene009245.t1 MTR_1g022445 38.438 333 188 7 3 323 2 329 7.49e-77 239
MS.gene009245.t1 MTR_0685s0030 64.024 164 59 0 162 325 1 164 1.43e-76 232
MS.gene009245.t1 MTR_4g009040 42.453 318 169 8 9 319 13 323 3.02e-76 237
MS.gene009245.t1 MTR_4g009690 42.812 313 170 6 9 319 13 318 5.85e-71 223
MS.gene009245.t1 MTR_2g028620 40.181 331 184 9 2 324 3 327 6.00e-70 221
MS.gene009245.t1 MTR_4g009690 42.675 314 170 7 9 319 13 319 1.86e-69 219
MS.gene009245.t1 MTR_2g028620 43.321 277 143 9 2 270 3 273 6.79e-62 200
MS.gene009245.t1 MTR_4g092080 37.346 324 187 7 10 320 15 335 8.57e-62 200
MS.gene009245.t1 MTR_7g074820 35.583 326 195 7 9 323 8 329 9.18e-59 192
MS.gene009245.t1 MTR_4g081440 37.805 328 173 9 10 314 21 340 1.98e-58 192
MS.gene009245.t1 MTR_4g081440 38.415 328 172 10 10 314 25 345 2.51e-58 192
MS.gene009245.t1 MTR_7g074880 33.945 327 196 8 9 323 8 326 1.33e-57 189
MS.gene009245.t1 MTR_3g011130 79.310 116 23 1 100 214 30 145 3.71e-56 179
MS.gene009245.t1 MTR_7g074850 34.251 327 198 8 9 323 8 329 1.79e-55 183
MS.gene009245.t1 MTR_7g074730 33.846 325 201 7 9 323 8 328 9.43e-55 181
MS.gene009245.t1 MTR_7g074710 36.765 272 164 5 9 275 8 276 3.33e-52 175
MS.gene009245.t1 MTR_0685s0030 63.248 117 43 0 162 278 1 117 1.93e-50 163
MS.gene009245.t1 MTR_4g077150 47.458 177 41 4 99 275 21 145 1.05e-45 153
MS.gene009245.t1 MTR_4g023730 34.752 282 168 8 4 275 3 278 1.47e-44 155
MS.gene009245.t1 MTR_0164s0070 53.175 126 58 1 9 133 5 130 5.28e-39 137
MS.gene009245.t1 MTR_7g074870 30.903 288 186 8 44 323 6 288 7.56e-38 136
MS.gene009245.t1 MTR_1g099230 93.548 62 4 0 100 161 36 97 4.94e-34 123
MS.gene009245.t1 MTR_6g406250 29.338 317 194 11 8 309 54 355 6.42e-34 127
MS.gene009245.t1 MTR_2g013250 31.142 289 180 5 9 278 7 295 1.43e-32 124
MS.gene009245.t1 MTR_5g029990 25.743 303 203 7 7 303 10 296 2.72e-30 117
MS.gene009245.t1 MTR_2g013230 30.034 293 178 5 9 278 8 296 2.94e-30 117
MS.gene009245.t1 MTR_2g013260 30.796 289 181 5 9 278 8 296 3.28e-30 116
MS.gene009245.t1 MTR_7g117190 31.650 297 175 9 9 281 7 299 3.28e-30 117
MS.gene009245.t1 MTR_7g117190 31.090 312 182 10 9 296 7 309 8.92e-30 115
MS.gene009245.t1 MTR_2g013260 30.796 289 181 5 9 278 8 296 1.10e-29 116
MS.gene009245.t1 MTR_6g406250 32.500 200 117 5 8 197 54 245 1.70e-28 111
MS.gene009245.t1 MTR_8g062710 46.250 80 32 2 9 88 20 88 7.04e-14 67.8
MS.gene009245.t1 MTR_8g062490 51.562 64 31 0 216 279 54 117 1.18e-13 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene009245.t1 AT5G19440 75.617 324 79 0 2 325 3 326 0.0 526
MS.gene009245.t1 AT1G51410 74.769 325 82 0 1 325 1 325 0.0 526
MS.gene009245.t1 AT1G09510 52.830 318 150 0 6 323 5 322 1.14e-120 350
MS.gene009245.t1 AT1G09480 53.651 315 146 0 6 320 5 319 2.92e-120 349
MS.gene009245.t1 AT1G09480 53.651 315 146 0 6 320 52 366 7.43e-120 350
MS.gene009245.t1 AT1G09490 53.333 315 147 0 6 320 5 319 5.21e-118 343
MS.gene009245.t1 AT1G66800 53.333 315 143 1 6 320 5 315 1.80e-112 329
MS.gene009245.t1 AT1G09500 51.713 321 152 3 6 323 5 325 1.20e-111 327
MS.gene009245.t1 AT1G09500 53.285 274 127 1 6 278 5 278 6.74e-102 301
MS.gene009245.t1 AT4G35420 45.912 318 167 4 9 324 8 322 5.40e-95 285
MS.gene009245.t1 AT1G09490 49.462 279 141 0 42 320 10 288 3.06e-94 281
MS.gene009245.t1 AT5G58490 46.177 327 170 5 1 324 1 324 1.04e-91 276
MS.gene009245.t1 AT1G15950 47.826 322 159 6 1 320 5 319 4.94e-91 275
MS.gene009245.t1 AT1G15950 47.826 322 159 6 1 320 5 319 4.94e-91 275
MS.gene009245.t1 AT1G09500 48.084 287 146 3 40 323 5 291 1.27e-88 267
MS.gene009245.t1 AT1G15950 47.302 315 157 6 1 313 5 312 2.48e-87 266
MS.gene009245.t1 AT1G80820 46.273 322 164 7 6 325 5 319 2.77e-86 263
MS.gene009245.t1 AT1G15950 48.387 279 136 5 1 278 5 276 5.23e-79 242
MS.gene009245.t1 AT1G15950 47.735 287 141 6 1 286 5 283 9.32e-79 242
MS.gene009245.t1 AT2G02400 40.439 319 180 7 9 323 6 318 2.00e-78 242
MS.gene009245.t1 AT1G15950 48.375 277 135 5 1 276 5 274 2.98e-78 241
MS.gene009245.t1 AT1G68540 41.414 297 164 5 11 301 6 298 7.25e-77 238
MS.gene009245.t1 AT1G80820 47.080 274 137 6 6 278 5 271 8.29e-73 226
MS.gene009245.t1 AT2G33590 41.066 319 179 6 9 324 9 321 2.12e-70 222
MS.gene009245.t1 AT5G42800 37.888 322 191 5 8 323 7 325 4.15e-68 218
MS.gene009245.t1 AT1G76470 42.405 316 171 9 9 318 7 317 2.59e-65 209
MS.gene009245.t1 AT1G25460 37.700 313 190 5 11 320 6 316 6.39e-65 207
MS.gene009245.t1 AT2G33600 40.938 320 178 7 9 324 9 321 1.75e-64 206
MS.gene009245.t1 AT1G61720 35.093 322 191 6 10 319 14 329 3.50e-56 186
MS.gene009245.t1 AT4G27250 35.045 331 194 9 10 325 14 338 2.66e-55 184
MS.gene009245.t1 AT4G27250 34.706 340 193 10 10 325 14 348 5.76e-55 183
MS.gene009245.t1 AT1G15950 43.946 223 121 4 100 320 1 221 7.41e-51 169
MS.gene009245.t1 AT2G45400 32.353 306 198 3 7 303 38 343 1.51e-46 161
MS.gene009245.t1 AT2G45400 33.333 279 177 3 7 276 38 316 1.06e-45 158
MS.gene009245.t1 AT2G23910 29.412 272 181 6 10 278 11 274 2.04e-42 148
MS.gene009245.t1 AT2G23910 29.630 270 179 6 10 276 11 272 2.16e-42 148
MS.gene009245.t1 AT2G23910 29.630 270 179 6 10 276 11 272 3.06e-42 148
MS.gene009245.t1 AT4G30470 29.268 287 191 6 7 290 8 285 4.16e-41 145
MS.gene009245.t1 AT1G68540 37.500 192 117 3 112 301 1 191 4.11e-39 137
MS.gene009245.t1 AT2G45400 35.023 217 134 2 7 216 38 254 3.98e-38 136
MS.gene009245.t1 AT2G23910 28.947 228 151 6 52 276 19 238 9.48e-32 120
MS.gene009245.t1 AT2G45400 28.889 270 185 2 41 303 17 286 1.78e-30 117
MS.gene009245.t1 AT5G14700 27.645 293 194 9 1 281 46 332 3.92e-30 117
MS.gene009245.t1 AT5G14700 29.911 224 145 6 1 216 46 265 4.03e-25 102
MS.gene009245.t1 AT4G33360 24.521 261 168 8 9 262 15 253 3.41e-13 69.7
MS.gene009245.t1 AT4G33360 24.521 261 168 8 9 262 15 253 3.45e-13 69.7
MS.gene009245.t1 AT4G33360 24.521 261 168 8 9 262 3 241 3.47e-13 69.7

Find 75 sgRNAs with CRISPR-Local

Find 162 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCCATCCCAAACTAGAATT+TGG 0.171474 3.3:-657426 None:intergenic
GTCCTTGACATCATGATAAA+AGG 0.226291 3.3:-656717 None:intergenic
GACATTTCCAAATTCTAGTT+TGG 0.253982 3.3:+657419 MS.gene009245:CDS
AACCAAGTGGTCAACCTTCT+TGG 0.257463 3.3:-656582 None:intergenic
CATTCTCGTACGCCAGAATA+TGG 0.258064 3.3:-657473 None:intergenic
ATTGCTGCTGTTGCGTATAA+TGG 0.272149 3.3:+656842 MS.gene009245:CDS
GCAATTCTAAACCTGATTAA+TGG 0.275531 3.3:+657162 MS.gene009245:CDS
AATTATTAATCTTACTTCTC+TGG 0.283324 3.3:-657591 None:intergenic
TCTTTGGAAACCTGATATAT+AGG 0.308566 3.3:-658783 None:intergenic
TAAAGAAAACAACATTGATA+TGG 0.308617 3.3:+657074 MS.gene009245:CDS
CTTCAGGTTACATCGCTTCA+TGG 0.319947 3.3:+656221 MS.gene009245:CDS
TTGCAGCAGCACTTGTGTTT+AGG 0.321177 3.3:-657143 None:intergenic
GCCTTTGATTCTGTTGTTCA+AGG 0.322181 3.3:+656665 MS.gene009245:CDS
TGTTGCAAATGCCCATATTC+TGG 0.323215 3.3:+657461 MS.gene009245:CDS
GTAATTAATTACCATTAATC+AGG 0.328588 3.3:-657173 None:intergenic
ATTAACCCAGCAATGGTCAT+AGG 0.359026 3.3:+657102 MS.gene009245:CDS
GTATGTGTGACTGGCGCTTC+AGG 0.374333 3.3:+656205 MS.gene009245:CDS
ACCAAGTGGTCAACCTTCTT+GGG 0.387248 3.3:-656581 None:intergenic
ACATTTCCAAATTCTAGTTT+GGG 0.393375 3.3:+657420 MS.gene009245:CDS
AGAGGCCCTATGACCATTGC+TGG 0.404733 3.3:-657108 None:intergenic
ATTATTAATCTTACTTCTCT+GGG 0.410205 3.3:-657590 None:intergenic
GGAGAGATTGCAACTGTTCA+AGG 0.418796 3.3:+656622 MS.gene009245:CDS
GCCGTATGTGCCTATATATC+AGG 0.426554 3.3:+658773 MS.gene009245:CDS
GGGACTTGAGTATACTCCTT+TGG 0.434471 3.3:+658821 MS.gene009245:CDS
GACCACTTGGTTAAGCTTGA+AGG 0.439383 3.3:+656593 MS.gene009245:CDS
CAAAGAAAAGGCGAAAAGCT+TGG 0.447824 3.3:+658800 MS.gene009245:CDS
TCCCAAGAAGGTTGACCACT+TGG 0.453559 3.3:+656580 MS.gene009245:CDS
GAGAAAATGAGCAGCAACTT+GGG 0.454229 3.3:+656175 None:intergenic
AGACAAGACGTTTGAGTGAT+GGG 0.455678 3.3:-656808 None:intergenic
AAAGAAAAGGCGAAAAGCTT+GGG 0.461360 3.3:+658801 MS.gene009245:CDS
AGAGAAAATGAGCAGCAACT+TGG 0.464708 3.3:+656174 None:intergenic
TCCAAATTCTAGTTTGGGAT+GGG 0.474083 3.3:+657425 MS.gene009245:CDS
TTCCAAATTCTAGTTTGGGA+TGG 0.486809 3.3:+657424 MS.gene009245:CDS
ATATCAGGTTTCCAAAGAAA+AGG 0.488979 3.3:+658788 MS.gene009245:CDS
TTGAGAGTCCCTTTGAGAGC+AGG 0.491416 3.3:-656761 None:intergenic
ATTGTTTCAGCTGTGGTATG+TGG 0.496971 3.3:+657011 MS.gene009245:intron
ATTCTCGTACGCCAGAATAT+GGG 0.502026 3.3:-657472 None:intergenic
TCCTTGACATCATGATAAAA+GGG 0.502735 3.3:-656716 None:intergenic
TTGATTGATCCTGCTCTCAA+AGG 0.509724 3.3:+656752 MS.gene009245:CDS
TTTAGGACTGGTTGCAAGAG+AGG 0.512693 3.3:-657126 None:intergenic
ACCTGATATATAGGCACATA+CGG 0.513032 3.3:-658774 None:intergenic
TGATTGATCCTGCTCTCAAA+GGG 0.514573 3.3:+656753 MS.gene009245:CDS
GCAGCACTTGTGTTTAGGAC+TGG 0.518349 3.3:-657138 None:intergenic
AAGACAAGACGTTTGAGTGA+TGG 0.518377 3.3:-656809 None:intergenic
TACGAGAATGCTTCAGCTAG+TGG 0.527796 3.3:+657486 MS.gene009245:CDS
GTCCGATTGCTTCTTAATCG+TGG 0.529226 3.3:+656247 MS.gene009245:CDS
GTCTCATTGACAACAACATC+AGG 0.531435 3.3:-656878 None:intergenic
TCATGATGTCAAGGACCCTC+AGG 0.532225 3.3:+656724 MS.gene009245:CDS
GGTTAAGCTTGAAGGTGCTA+AGG 0.535332 3.3:+656601 MS.gene009245:CDS
TCCTTGATGCTCACTTCCAA+AGG 0.541588 3.3:-658837 None:intergenic
TTAACCCAGCAATGGTCATA+GGG 0.542832 3.3:+657103 MS.gene009245:CDS
TCTGTTGTTCAAGGCTGTCA+TGG 0.548150 3.3:+656674 MS.gene009245:CDS
CAAGGCAAATCTACTTGAAG+AGG 0.550142 3.3:+656640 MS.gene009245:CDS
GGAAATGTTGTATGTGTGAC+TGG 0.550828 3.3:+656196 MS.gene009245:CDS
GACAAGACGTTTGAGTGATG+GGG 0.560252 3.3:-656807 None:intergenic
GCCTTGAACAACAGAATCAA+AGG 0.567407 3.3:-656666 None:intergenic
ATGTTGTTGTCAATGAGACT+TGG 0.575014 3.3:+656882 MS.gene009245:CDS
ACAACAACATCAGGAGTTCG+AGG 0.578908 3.3:-656869 None:intergenic
CATTGGCTGAAGAAGCTGCA+TGG 0.580278 3.3:+657043 MS.gene009245:CDS
TTCTCTGGGAGTTGCAACGA+AGG 0.598543 3.3:-657576 None:intergenic
GTATGTGGTTTCAAAGACAT+TGG 0.606075 3.3:+657026 MS.gene009245:CDS
CACCTTCAAGCTTAACCAAG+TGG 0.608434 3.3:-656595 None:intergenic
GCCTGTAGATGATCCCAAGA+AGG 0.612585 3.3:+656568 MS.gene009245:intron
AGCCACGATTAAGAAGCAAT+CGG 0.615772 3.3:-656249 None:intergenic
TCCTTTGGAAGTGAGCATCA+AGG 0.622590 3.3:+658836 MS.gene009245:CDS
CACACTACTCAGAAGTTGTG+AGG 0.628161 3.3:+657535 MS.gene009245:CDS
AATACTTGGATCGCGAACGG+TGG 0.629535 3.3:-656284 None:intergenic
GAGGCCCTATGACCATTGCT+GGG 0.631385 3.3:-657107 None:intergenic
GGATCAATCAATTCAGCCTG+AGG 0.632382 3.3:-656740 None:intergenic
GGTTACTATTAACCCAGCAA+TGG 0.635018 3.3:+657095 MS.gene009245:CDS
ACAAATACTTGGATCGCGAA+CGG 0.645774 3.3:-656287 None:intergenic
TCTCTGGGAGTTGCAACGAA+GGG 0.653512 3.3:-657575 None:intergenic
AAGGCAAATCTACTTGAAGA+GGG 0.656212 3.3:+656641 MS.gene009245:CDS
AACTATGTTTACCAGATGTG+CGG 0.691679 3.3:+658743 MS.gene009245:intron
GATCAATCAATTCAGCCTGA+GGG 0.692249 3.3:-656739 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATGTAATTATTATTGAT+TGG - chr3.3:656371-656390 None:intergenic 10.0%
!! TATAAATGTAAATACAGAAA+CGG - chr3.3:658660-658679 None:intergenic 15.0%
!!! ATTAAGTGTTTCTAAAAATA+CGG + chr3.3:658533-658552 MS.gene009245:intron 15.0%
!! AATAGAATCTCTCAAAATAA+GGG + chr3.3:657889-657908 MS.gene009245:intron 20.0%
!! AATTATTAATCTTACTTCTC+TGG - chr3.3:657594-657613 None:intergenic 20.0%
!! ACTATCATATAGTTAAAGTA+TGG + chr3.3:658092-658111 MS.gene009245:intron 20.0%
!! ATTATTAATCTTACTTCTCT+GGG - chr3.3:657593-657612 None:intergenic 20.0%
!! CAATTTAATGCTAAAATGAA+AGG + chr3.3:657715-657734 MS.gene009245:intron 20.0%
!! CTATCATATAGTTAAAGTAT+GGG + chr3.3:658093-658112 MS.gene009245:intron 20.0%
!! GTAATTAATTACCATTAATC+AGG - chr3.3:657176-657195 None:intergenic 20.0%
!! TAAAGAAAACAACATTGATA+TGG + chr3.3:657074-657093 MS.gene009245:CDS 20.0%
!! TTTACATAACAAGATTGTAA+AGG + chr3.3:657857-657876 MS.gene009245:intron 20.0%
!!! AAATAAAGCTTTAAAGAATG+TGG - chr3.3:657681-657700 None:intergenic 20.0%
!!! GTTAAAAAGTACAGAAATAA+TGG - chr3.3:658300-658319 None:intergenic 20.0%
!!! TGTACTGAATTTTTCATTTT+GGG + chr3.3:658498-658517 MS.gene009245:intron 20.0%
!!! TTGTACTGAATTTTTCATTT+TGG + chr3.3:658497-658516 MS.gene009245:intron 20.0%
! ACCAATAATAATTTCAATCC+GGG - chr3.3:656453-656472 None:intergenic 25.0%
! ATAACACCTTCTATCATATT+GGG + chr3.3:658394-658413 MS.gene009245:intron 25.0%
! ATTGAAATTATTATTGGTGG+TGG + chr3.3:656455-656474 MS.gene009245:intron 25.0%
! CAATAGAATCTCTCAAAATA+AGG + chr3.3:657888-657907 MS.gene009245:intron 25.0%
! CACCAATAATAATTTCAATC+CGG - chr3.3:656454-656473 None:intergenic 25.0%
! GAAAGAAAAAGACAAATACT+TGG - chr3.3:656301-656320 None:intergenic 25.0%
! GAGTATAAAACAACATTTCT+AGG - chr3.3:658580-658599 None:intergenic 25.0%
! TATAACACCTTCTATCATAT+TGG + chr3.3:658393-658412 MS.gene009245:intron 25.0%
! TCTTTAATGTATACGGAAAA+AGG + chr3.3:657773-657792 MS.gene009245:intron 25.0%
!! AATAAGGGAAAGTACATTAA+TGG + chr3.3:657904-657923 MS.gene009245:intron 25.0%
!! GTTTTATACTCGAAAATCAT+AGG + chr3.3:658589-658608 MS.gene009245:intron 25.0%
!!! ACATTTCCAAATTCTAGTTT+GGG + chr3.3:657420-657439 MS.gene009245:CDS 25.0%
!!! GGTTGTTTCTTTAATGTATA+CGG + chr3.3:657766-657785 MS.gene009245:intron 25.0%
AACATGAGCTATAAATCGAA+AGG - chr3.3:658252-658271 None:intergenic 30.0%
AAGTTACCCAATATGATAGA+AGG - chr3.3:658403-658422 None:intergenic 30.0%
ACAGAATGATGAATCATGTA+GGG - chr3.3:658637-658656 None:intergenic 30.0%
ACCCGGATTGAAATTATTAT+TGG + chr3.3:656449-656468 MS.gene009245:intron 30.0%
ACTCGAAAATCATAGGTTAA+TGG + chr3.3:658596-658615 MS.gene009245:intron 30.0%
AGCTTCTATTATCTACAGAA+GGG - chr3.3:657372-657391 None:intergenic 30.0%
ATAGAGAACATATCAACTAG+GGG - chr3.3:658069-658088 None:intergenic 30.0%
ATATCAGGTTTCCAAAGAAA+AGG + chr3.3:658788-658807 MS.gene009245:CDS 30.0%
ATTGATTATACAGACCAAGT+TGG - chr3.3:658002-658021 None:intergenic 30.0%
CAAATATGTTTGTGTTCAAG+AGG + chr3.3:657335-657354 MS.gene009245:intron 30.0%
CGGATTGAAATTATTATTGG+TGG + chr3.3:656452-656471 MS.gene009245:intron 30.0%
GATAGAGAACATATCAACTA+GGG - chr3.3:658070-658089 None:intergenic 30.0%
GCAATTCTAAACCTGATTAA+TGG + chr3.3:657162-657181 MS.gene009245:CDS 30.0%
TAACTATAATCACCTTCTAG+CGG + chr3.3:657955-657974 MS.gene009245:intron 30.0%
TACAGAAGACACAAAAATAG+AGG - chr3.3:658450-658469 None:intergenic 30.0%
TATATTCTATGCATCCAACT+TGG + chr3.3:657985-658004 MS.gene009245:intron 30.0%
TCCTTGACATCATGATAAAA+GGG - chr3.3:656719-656738 None:intergenic 30.0%
TGATAGAGAACATATCAACT+AGG - chr3.3:658071-658090 None:intergenic 30.0%
! AATATGTATGTGTCCTGTTT+TGG + chr3.3:656479-656498 MS.gene009245:intron 30.0%
! CAATCTTGTTATGTAAAGCA+AGG - chr3.3:657854-657873 None:intergenic 30.0%
! CATTGCTAATAGTTGATTCA+GGG + chr3.3:657745-657764 MS.gene009245:intron 30.0%
! GACATTTCCAAATTCTAGTT+TGG + chr3.3:657419-657438 MS.gene009245:CDS 30.0%
! TCATTGCTAATAGTTGATTC+AGG + chr3.3:657744-657763 MS.gene009245:intron 30.0%
! TCTTTGGAAACCTGATATAT+AGG - chr3.3:658786-658805 None:intergenic 30.0%
!! AAAACAACATTTCTAGGACT+TGG - chr3.3:658574-658593 None:intergenic 30.0%
!!! AATTCAAAAGCGTTTTTGAG+AGG - chr3.3:656952-656971 None:intergenic 30.0%
AAAGAAAAGGCGAAAAGCTT+GGG + chr3.3:658801-658820 MS.gene009245:CDS 35.0%
AACTATAATCACCTTCTAGC+GGG + chr3.3:657956-657975 MS.gene009245:intron 35.0%
AACTATGTTTACCAGATGTG+CGG + chr3.3:658743-658762 MS.gene009245:intron 35.0%
AAGCAACAATGAAGCAATTG+GGG - chr3.3:657278-657297 None:intergenic 35.0%
AAGGCAAATCTACTTGAAGA+GGG + chr3.3:656641-656660 MS.gene009245:CDS 35.0%
ACAAGCAACAATGAAGCAAT+TGG - chr3.3:657280-657299 None:intergenic 35.0%
ACCTGATATATAGGCACATA+CGG - chr3.3:658777-658796 None:intergenic 35.0%
ATGTTGTTGTCAATGAGACT+TGG + chr3.3:656882-656901 MS.gene009245:CDS 35.0%
CAAGCAACAATGAAGCAATT+GGG - chr3.3:657279-657298 None:intergenic 35.0%
CACATCTATGTGGATGAATT+GGG + chr3.3:658181-658200 MS.gene009245:intron 35.0%
GAAGACACAAAAATAGAGGA+AGG - chr3.3:658446-658465 None:intergenic 35.0%
GACAGAATGATGAATCATGT+AGG - chr3.3:658638-658657 None:intergenic 35.0%
GAGCTTCTATTATCTACAGA+AGG - chr3.3:657373-657392 None:intergenic 35.0%
GTATGTGGTTTCAAAGACAT+TGG + chr3.3:657026-657045 MS.gene009245:CDS 35.0%
GTCCTTGACATCATGATAAA+AGG - chr3.3:656720-656739 None:intergenic 35.0%
TTTAACACATATTCAGCCTC+TGG + chr3.3:658314-658333 MS.gene009245:intron 35.0%
! TCCCTTTTATCATGATGTCA+AGG + chr3.3:656715-656734 MS.gene009245:CDS 35.0%
!! TCCAAATTCTAGTTTGGGAT+GGG + chr3.3:657425-657444 MS.gene009245:CDS 35.0%
!! TTCCAAATTCTAGTTTGGGA+TGG + chr3.3:657424-657443 MS.gene009245:CDS 35.0%
AAACCATGTGTTACGTACTG+GGG - chr3.3:658341-658360 None:intergenic 40.0%
AAGACAAGACGTTTGAGTGA+TGG - chr3.3:656812-656831 None:intergenic 40.0%
ACAAACACCAACACCAAAAC+AGG - chr3.3:656495-656514 None:intergenic 40.0%
ACAAATACTTGGATCGCGAA+CGG - chr3.3:656290-656309 None:intergenic 40.0%
ACCCATCCCAAACTAGAATT+TGG - chr3.3:657429-657448 None:intergenic 40.0%
AGACAAGACGTTTGAGTGAT+GGG - chr3.3:656811-656830 None:intergenic 40.0%
AGCAACAATGAAGCAATTGG+GGG - chr3.3:657277-657296 None:intergenic 40.0%
AGCCACGATTAAGAAGCAAT+CGG - chr3.3:656252-656271 None:intergenic 40.0%
ATAATTTCAATCCGGGTGTC+TGG - chr3.3:656446-656465 None:intergenic 40.0%
ATATATATGCTCCCGCTAGA+AGG - chr3.3:657970-657989 None:intergenic 40.0%
ATCTATGTGGATGAATTGGG+AGG + chr3.3:658184-658203 MS.gene009245:intron 40.0%
ATTAACCCAGCAATGGTCAT+AGG + chr3.3:657102-657121 MS.gene009245:CDS 40.0%
ATTCTCGTACGCCAGAATAT+GGG - chr3.3:657475-657494 None:intergenic 40.0%
ATTGCTGCTGTTGCGTATAA+TGG + chr3.3:656842-656861 MS.gene009245:CDS 40.0%
ATTGTTTCAGCTGTGGTATG+TGG + chr3.3:657011-657030 MS.gene009245:intron 40.0%
CAAAGAAAAGGCGAAAAGCT+TGG + chr3.3:658800-658819 MS.gene009245:CDS 40.0%
CAAGGCAAATCTACTTGAAG+AGG + chr3.3:656640-656659 MS.gene009245:CDS 40.0%
CCACAGCTGAAACAATCAAT+AGG - chr3.3:657007-657026 None:intergenic 40.0%
CTCTTTCACTTCATTGATGC+AGG + chr3.3:657390-657409 MS.gene009245:intron 40.0%
GAAACCATGTGTTACGTACT+GGG - chr3.3:658342-658361 None:intergenic 40.0%
GATCAATCAATTCAGCCTGA+GGG - chr3.3:656742-656761 None:intergenic 40.0%
GCACATCTATGTGGATGAAT+TGG + chr3.3:658180-658199 MS.gene009245:intron 40.0%
GCCTTGAACAACAGAATCAA+AGG - chr3.3:656669-656688 None:intergenic 40.0%
GCCTTTGATTCTGTTGTTCA+AGG + chr3.3:656665-656684 MS.gene009245:CDS 40.0%
GGAAATGTTGTATGTGTGAC+TGG + chr3.3:656196-656215 MS.gene009245:CDS 40.0%
GGACTTGGCACATTTATACT+TGG - chr3.3:658559-658578 None:intergenic 40.0%
GGTTACTATTAACCCAGCAA+TGG + chr3.3:657095-657114 MS.gene009245:CDS 40.0%
GTCTCATTGACAACAACATC+AGG - chr3.3:656881-656900 None:intergenic 40.0%
TCAATTCGTCCACAAACACT+TGG - chr3.3:658121-658140 None:intergenic 40.0%
TGAAACCATGTGTTACGTAC+TGG - chr3.3:658343-658362 None:intergenic 40.0%
TGATTGATCCTGCTCTCAAA+GGG + chr3.3:656753-656772 MS.gene009245:CDS 40.0%
TGCATTCACCAAACCTCTAT+GGG - chr3.3:658033-658052 None:intergenic 40.0%
TGTTGCAAATGCCCATATTC+TGG + chr3.3:657461-657480 MS.gene009245:CDS 40.0%
TTAACCCAGCAATGGTCATA+GGG + chr3.3:657103-657122 MS.gene009245:CDS 40.0%
TTGATTGATCCTGCTCTCAA+AGG + chr3.3:656752-656771 MS.gene009245:CDS 40.0%
TTGCATTCACCAAACCTCTA+TGG - chr3.3:658034-658053 None:intergenic 40.0%
! CAAGCTTTTCGCCTTTTCTT+TGG - chr3.3:658802-658821 None:intergenic 40.0%
! CCTATTGATTGTTTCAGCTG+TGG + chr3.3:657004-657023 MS.gene009245:intron 40.0%
!!! TATGTGTCCTGTTTTGGTGT+TGG + chr3.3:656485-656504 MS.gene009245:intron 40.0%
AACCAAGTGGTCAACCTTCT+TGG - chr3.3:656585-656604 None:intergenic 45.0%
ACAACAACATCAGGAGTTCG+AGG - chr3.3:656872-656891 None:intergenic 45.0%
ACCAAGTGGTCAACCTTCTT+GGG - chr3.3:656584-656603 None:intergenic 45.0%
ACCTTCTTGGGATCATCTAC+AGG - chr3.3:656572-656591 None:intergenic 45.0%
CAATGAAGCAATTGGGGGAA+AGG - chr3.3:657272-657291 None:intergenic 45.0%
CACACTACTCAGAAGTTGTG+AGG + chr3.3:657535-657554 MS.gene009245:CDS 45.0%
CACCTTCAAGCTTAACCAAG+TGG - chr3.3:656598-656617 None:intergenic 45.0%
CATTCTCGTACGCCAGAATA+TGG - chr3.3:657476-657495 None:intergenic 45.0%
CGTAACACATGGTTTCACTG+AGG + chr3.3:658346-658365 MS.gene009245:intron 45.0%
GACAAGACGTTTGAGTGATG+GGG - chr3.3:656810-656829 None:intergenic 45.0%
GACCACTTGGTTAAGCTTGA+AGG + chr3.3:656593-656612 MS.gene009245:CDS 45.0%
GCATTCACCAAACCTCTATG+GGG - chr3.3:658032-658051 None:intergenic 45.0%
GCCGTATGTGCCTATATATC+AGG + chr3.3:658773-658792 MS.gene009245:CDS 45.0%
GGAGAGATTGCAACTGTTCA+AGG + chr3.3:656622-656641 MS.gene009245:CDS 45.0%
GGATCAATCAATTCAGCCTG+AGG - chr3.3:656743-656762 None:intergenic 45.0%
GGGACTTGAGTATACTCCTT+TGG + chr3.3:658821-658840 MS.gene009245:CDS 45.0%
GTATGGGTACCAAGTGTTTG+TGG + chr3.3:658109-658128 MS.gene009245:intron 45.0%
GTCCGATTGCTTCTTAATCG+TGG + chr3.3:656247-656266 MS.gene009245:CDS 45.0%
TACCATACGAAGCACAGACA+CGG - chr3.3:656520-656539 None:intergenic 45.0%
TACGAGAATGCTTCAGCTAG+TGG + chr3.3:657486-657505 MS.gene009245:CDS 45.0%
TCAATCTGACATCCCCATAG+AGG + chr3.3:658017-658036 MS.gene009245:intron 45.0%
TCCTTGATGCTCACTTCCAA+AGG - chr3.3:658840-658859 None:intergenic 45.0%
TCGAAAGGTGATCAAGTCTG+AGG - chr3.3:658237-658256 None:intergenic 45.0%
TCTGTTGTTCAAGGCTGTCA+TGG + chr3.3:656674-656693 MS.gene009245:CDS 45.0%
TGTGACTGAGCACATCTATG+TGG + chr3.3:658171-658190 MS.gene009245:intron 45.0%
TTGCAGCAGCACTTGTGTTT+AGG - chr3.3:657146-657165 None:intergenic 45.0%
! CTTCAGGTTACATCGCTTCA+TGG + chr3.3:656221-656240 MS.gene009245:CDS 45.0%
! TCCTTTGGAAGTGAGCATCA+AGG + chr3.3:658836-658855 MS.gene009245:CDS 45.0%
!! GGTTAAGCTTGAAGGTGCTA+AGG + chr3.3:656601-656620 MS.gene009245:CDS 45.0%
!! TTTAGGACTGGTTGCAAGAG+AGG - chr3.3:657129-657148 None:intergenic 45.0%
AATACTTGGATCGCGAACGG+TGG - chr3.3:656287-656306 None:intergenic 50.0%
CTGACATCCCCATAGAGGTT+TGG + chr3.3:658022-658041 MS.gene009245:intron 50.0%
GCCTGTAGATGATCCCAAGA+AGG + chr3.3:656568-656587 MS.gene009245:intron 50.0%
GGTGATCAAGTCTGAGGAAC+AGG - chr3.3:658231-658250 None:intergenic 50.0%
TCATGATGTCAAGGACCCTC+AGG + chr3.3:656724-656743 MS.gene009245:CDS 50.0%
TCCCAAGAAGGTTGACCACT+TGG + chr3.3:656580-656599 MS.gene009245:CDS 50.0%
TGAATGAGACACCAGACACC+CGG + chr3.3:656432-656451 MS.gene009245:intron 50.0%
! CATTGGCTGAAGAAGCTGCA+TGG + chr3.3:657043-657062 MS.gene009245:CDS 50.0%
! GCAGCACTTGTGTTTAGGAC+TGG - chr3.3:657141-657160 None:intergenic 50.0%
! TCTCTGGGAGTTGCAACGAA+GGG - chr3.3:657578-657597 None:intergenic 50.0%
! TTCTCTGGGAGTTGCAACGA+AGG - chr3.3:657579-657598 None:intergenic 50.0%
! TTGAGAGTCCCTTTGAGAGC+AGG - chr3.3:656764-656783 None:intergenic 50.0%
AGAGGCCCTATGACCATTGC+TGG - chr3.3:657111-657130 None:intergenic 55.0%
CGGCTTATCATCCGCACATC+TGG - chr3.3:658757-658776 None:intergenic 55.0%
GAGGCCCTATGACCATTGCT+GGG - chr3.3:657110-657129 None:intergenic 55.0%
GGACCCCAGTACGTAACACA+TGG + chr3.3:658335-658354 MS.gene009245:intron 55.0%
GTATGTGTGACTGGCGCTTC+AGG + chr3.3:656205-656224 MS.gene009245:CDS 55.0%
GTCCGTGTCTGTGCTTCGTA+TGG + chr3.3:656515-656534 MS.gene009245:intron 55.0%
TGTTACGTACTGGGGTCCAG+AGG - chr3.3:658333-658352 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr3.3 gene 656181 658902 656181 ID=MS.gene009245
chr3.3 mRNA 656181 658902 656181 ID=MS.gene009245.t1;Parent=MS.gene009245
chr3.3 exon 656181 656301 656181 ID=MS.gene009245.t1.exon1;Parent=MS.gene009245.t1
chr3.3 CDS 656181 656301 656181 ID=cds.MS.gene009245.t1;Parent=MS.gene009245.t1
chr3.3 exon 656576 656937 656576 ID=MS.gene009245.t1.exon2;Parent=MS.gene009245.t1
chr3.3 CDS 656576 656937 656576 ID=cds.MS.gene009245.t1;Parent=MS.gene009245.t1
chr3.3 exon 657021 657183 657021 ID=MS.gene009245.t1.exon3;Parent=MS.gene009245.t1
chr3.3 CDS 657021 657183 657021 ID=cds.MS.gene009245.t1;Parent=MS.gene009245.t1
chr3.3 exon 657412 657598 657412 ID=MS.gene009245.t1.exon4;Parent=MS.gene009245.t1
chr3.3 CDS 657412 657598 657412 ID=cds.MS.gene009245.t1;Parent=MS.gene009245.t1
chr3.3 exon 658758 658902 658758 ID=MS.gene009245.t1.exon5;Parent=MS.gene009245.t1
chr3.3 CDS 658758 658902 658758 ID=cds.MS.gene009245.t1;Parent=MS.gene009245.t1
Gene Sequence

>MS.gene009245

ATGAGCAGCAACTTGGGAAATGTTGTATGTGTGACTGGCGCTTCAGGTTACATCGCTTCATGGCTCGTCCGATTGCTTCTTAATCGTGGCTACACTGTTAAAGCCACCGTTCGCGATCCAAGTATTTGTCTTTTTCTTTCATTTCACTTCTCTTCTGATCTATCAATCACTCACTCACACATCAACACCAATCAATAATAATTACATTATTTCAGAAAATTGTATAATTCAATGTTTTGTTTTCACATGTATGAATGAGACACCAGACACCCGGATTGAAATTATTATTGGTGGTGGTAATATGTATGTGTCCTGTTTTGGTGTTGGTGTTTGTGTCCGTGTCTGTGCTTCGTATGGTATATGTTTGATTTGATTATAATTGTGTCTGCCTGTAGATGATCCCAAGAAGGTTGACCACTTGGTTAAGCTTGAAGGTGCTAAGGAGAGATTGCAACTGTTCAAGGCAAATCTACTTGAAGAGGGTGCCTTTGATTCTGTTGTTCAAGGCTGTCATGGTGTCTTTCACACTGCATCTCCCTTTTATCATGATGTCAAGGACCCTCAGGCTGAATTGATTGATCCTGCTCTCAAAGGGACTCTCAATGTTCTCAACTCATGTGCTAAATCCCCATCACTCAAACGTCTTGTCTTAACATCTTCTATTGCTGCTGTTGCGTATAATGGAAAACCTCGAACTCCTGATGTTGTTGTCAATGAGACTTGGTTTACTGATGCTGATTTATGTGCTAAATCAAACGTATGTGTGTGCCTCTCAAAAACGCTTTTGAATTATGCTATCATGATCTTTGACTTCTTTCTATTTCCTATTGATTGTTTCAGCTGTGGTATGTGGTTTCAAAGACATTGGCTGAAGAAGCTGCATGGAAATTTGTTAAAGAAAACAACATTGATATGGTTACTATTAACCCAGCAATGGTCATAGGGCCTCTCTTGCAACCAGTCCTAAACACAAGTGCTGCTGCAATTCTAAACCTGATTAATGGTAATTAATTACAATTCTAAACGCAGCAAATACTCTTATTATCTTTCTGTGTCTACATCTTGCATATTATTTTTCTTGTCAGCTACCTTTCCCCCAATTGCTTCATTGTTGCTTGTTGTGTTTAATGAATATTAGCAGTTCTTATGTACTTCAAATATGTTTGTGTTCAAGAGGACAAGATTTTGCCCTTCTGTAGATAATAGAAGCTCTTTCACTTCATTGATGCAGGTGCACAGACATTTCCAAATTCTAGTTTGGGATGGGTCAATGTGAAAGATGTTGCAAATGCCCATATTCTGGCGTACGAGAATGCTTCAGCTAGTGGAAGACATTGTTTAGTTGAGAGAGTAGCACACTACTCAGAAGTTGTGAGGATTTTACGTGAACTGTACCCTTCGTTGCAACTCCCAGAGAAGTAAGATTAATAATTTCGATAACTGAAAGATTGCATTTAATTTATGTTCTTATATGAATGCTAATTCTCATCTGATGTGCCACATTCTTTAAAGCTTTATTTACTTGTTTGAAACTCAATTTAATGCTAAAATGAAAGGATTTAGTCATTGCTAATAGTTGATTCAGGGTTGTTTCTTTAATGTATACGGAAAAAGGTAACTAAGTGAAAAATGCAGAAAAATTTCAACAATTGAATGTTTTAGAATAAATGCCTTGCTTTACATAACAAGATTGTAAAGGTTTATATACAATAGAATCTCTCAAAATAAGGGAAAGTACATTAATGGTAATAAACAAAGAGATGAATTCTAATTGTAACTATAATCACCTTCTAGCGGGAGCATATATATTCTATGCATCCAACTTGGTCTGTATAATCAATCTGACATCCCCATAGAGGTTTGGTGAATGCAACTTCATATTTGTCCCCTAGTTGATATGTTCTCTATCAGACTATCATATAGTTAAAGTATGGGTACCAAGTGTTTGTGGACGAATTGATTCATTTGAGTTGTTTTCTATGTGCTTGCTTGTGACTGAGCACATCTATGTGGATGAATTGGGAGGTTGCTTTATGTTATCTGATGACCTGTTCCTCAGACTTGATCACCTTTCGATTTATAGCTCATGTTAATTAGCTTTACTTCAGTATAACTACCATTATTTCTGTACTTTTTAACACATATTCAGCCTCTGGACCCCAGTACGTAACACATGGTTTCACTGAGGTTTTACTAATTTCTTTTTCAATAATATAACACCTTCTATCATATTGGGTAACTTGAATGTCATGATGACTTGCACCTTCCTCTATTTTTGTGTCTTCTGTACATTAATTGTTATGCAAAATTGCTAATTTGTACTGAATTTTTCATTTTGGGATTCATTGCTGAATTAAGTGTTTCTAAAAATACGGCCAAGTATAAATGTGCCAAGTCCTAGAAATGTTGTTTTATACTCGAAAATCATAGGTTAATGGTTACTATAAGATGAGCCCTACATGATTCATCATTCTGTCCGTTTCTGTATTTACATTTATATAATAATTTAAATATTTATAGTTTAATCTGTTTAGATTTTTCTAATATCGTTTTCACTTTGTCAACTATGTTTACCAGATGTGCGGATGATAAGCCGTATGTGCCTATATATCAGGTTTCCAAAGAAAAGGCGAAAAGCTTGGGACTTGAGTATACTCCTTTGGAAGTGAGCATCAAGGAGACTGTTGAAAGTTTGAAAGAAAAGAAGTTCGTCAACCTTTAA
Protein sequence

>MS.gene009245.t1

MSSNLGNVVCVTGASGYIASWLVRLLLNRGYTVKATVRDPNDPKKVDHLVKLEGAKERLQLFKANLLEEGAFDSVVQGCHGVFHTASPFYHDVKDPQAELIDPALKGTLNVLNSCAKSPSLKRLVLTSSIAAVAYNGKPRTPDVVVNETWFTDADLCAKSNLWYVVSKTLAEEAAWKFVKENNIDMVTINPAMVIGPLLQPVLNTSAAAILNLINGAQTFPNSSLGWVNVKDVANAHILAYENASASGRHCLVERVAHYSEVVRILRELYPSLQLPEKCADDKPYVPIYQVSKEKAKSLGLEYTPLEVSIKETVESLKEKKFVNL