Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene50831.t1 | XP_003598007.1 | 93.8 | 322 | 4 | 1 | 1 | 306 | 1 | 322 | 2.60E-165 | 591.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene50831.t1 | Q9S9N9 | 46.8 | 310 | 148 | 6 | 6 | 301 | 13 | 319 | 8.5e-72 | 271.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene50831.t1 | G7IYC6 | 93.8 | 322 | 4 | 1 | 1 | 306 | 1 | 322 | 1.9e-165 | 591.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene058752 | MS.gene50831 | 0.94763 | 4.63E-106 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene50831 | MS.gene65685 | PPI |
MS.gene50831 | MS.gene27251 | PPI |
MS.gene50831 | MS.gene053809 | PPI |
MS.gene96654 | MS.gene50831 | PPI |
MS.gene50831 | MS.gene63037 | PPI |
MS.gene50831 | MS.gene24248 | PPI |
MS.gene50831 | MS.gene02017 | PPI |
MS.gene50831 | MS.gene72939 | PPI |
MS.gene50831 | MS.gene36346 | PPI |
MS.gene76529 | MS.gene50831 | PPI |
MS.gene50831 | MS.gene90702 | PPI |
MS.gene003216 | MS.gene50831 | PPI |
MS.gene50831 | MS.gene90701 | PPI |
MS.gene24249 | MS.gene50831 | PPI |
MS.gene50831 | MS.gene85144 | PPI |
MS.gene50831 | MS.gene02801 | PPI |
MS.gene50831 | MS.gene26988 | PPI |
MS.gene50831 | MS.gene27250 | PPI |
MS.gene50831 | MS.gene02799 | PPI |
MS.gene50831 | MS.gene26989 | PPI |
MS.gene50831 | MS.gene069864 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene50831.t1 | MTR_3g005210 | 93.789 | 322 | 4 | 1 | 1 | 306 | 1 | 322 | 0.0 | 611 |
MS.gene50831.t1 | MTR_3g005170 | 86.250 | 320 | 28 | 1 | 3 | 306 | 7 | 326 | 0.0 | 563 |
MS.gene50831.t1 | MTR_3g005170 | 86.139 | 303 | 27 | 1 | 4 | 306 | 8 | 295 | 0.0 | 529 |
MS.gene50831.t1 | MTR_3g005170 | 86.081 | 273 | 22 | 1 | 3 | 259 | 7 | 279 | 8.76e-173 | 479 |
MS.gene50831.t1 | MTR_8g062440 | 67.925 | 318 | 85 | 2 | 5 | 306 | 7 | 323 | 4.40e-160 | 449 |
MS.gene50831.t1 | MTR_8g062440 | 67.712 | 319 | 85 | 3 | 5 | 306 | 7 | 324 | 4.94e-158 | 444 |
MS.gene50831.t1 | MTR_8g062110 | 66.352 | 318 | 90 | 2 | 5 | 306 | 8 | 324 | 5.12e-156 | 439 |
MS.gene50831.t1 | MTR_8g062110 | 66.352 | 318 | 90 | 2 | 5 | 306 | 17 | 333 | 7.28e-156 | 439 |
MS.gene50831.t1 | MTR_4g077100 | 63.522 | 318 | 100 | 1 | 5 | 306 | 10 | 327 | 4.03e-154 | 434 |
MS.gene50831.t1 | MTR_4g077130 | 62.462 | 325 | 103 | 2 | 1 | 306 | 1 | 325 | 6.57e-152 | 428 |
MS.gene50831.t1 | MTR_8g062440 | 67.159 | 271 | 72 | 2 | 5 | 259 | 7 | 276 | 1.65e-129 | 372 |
MS.gene50831.t1 | MTR_4g077100 | 63.100 | 271 | 84 | 1 | 5 | 259 | 10 | 280 | 6.81e-128 | 366 |
MS.gene50831.t1 | MTR_8g062110 | 64.945 | 271 | 78 | 2 | 5 | 259 | 8 | 277 | 2.35e-127 | 365 |
MS.gene50831.t1 | MTR_8g062110 | 64.945 | 271 | 78 | 2 | 5 | 259 | 8 | 277 | 2.65e-127 | 364 |
MS.gene50831.t1 | MTR_8g062110 | 69.298 | 228 | 69 | 1 | 79 | 306 | 12 | 238 | 1.11e-114 | 331 |
MS.gene50831.t1 | MTR_4g006940 | 47.419 | 310 | 146 | 6 | 6 | 301 | 17 | 323 | 8.72e-89 | 268 |
MS.gene50831.t1 | MTR_5g072620 | 44.410 | 322 | 157 | 5 | 3 | 305 | 2 | 320 | 2.01e-87 | 265 |
MS.gene50831.t1 | MTR_8g062110 | 67.956 | 181 | 57 | 1 | 79 | 259 | 12 | 191 | 4.70e-86 | 256 |
MS.gene50831.t1 | MTR_2g104960 | 44.375 | 320 | 161 | 6 | 1 | 306 | 15 | 331 | 5.15e-84 | 256 |
MS.gene50831.t1 | MTR_3g031650 | 40.810 | 321 | 168 | 5 | 3 | 304 | 2 | 319 | 5.31e-80 | 245 |
MS.gene50831.t1 | MTR_5g056600 | 39.117 | 317 | 172 | 5 | 7 | 304 | 5 | 319 | 7.51e-80 | 245 |
MS.gene50831.t1 | MTR_2g101330 | 41.139 | 316 | 162 | 6 | 6 | 301 | 5 | 316 | 1.43e-78 | 242 |
MS.gene50831.t1 | MTR_1g022440 | 39.564 | 321 | 169 | 6 | 3 | 301 | 5 | 322 | 7.07e-77 | 238 |
MS.gene50831.t1 | MTR_0685s0030 | 63.415 | 164 | 60 | 0 | 143 | 306 | 1 | 164 | 1.36e-75 | 229 |
MS.gene50831.t1 | MTR_4g006940 | 47.566 | 267 | 124 | 5 | 6 | 259 | 17 | 280 | 2.18e-74 | 230 |
MS.gene50831.t1 | MTR_4g006940 | 47.566 | 267 | 124 | 5 | 6 | 259 | 17 | 280 | 2.18e-74 | 230 |
MS.gene50831.t1 | MTR_3g031650 | 42.751 | 269 | 132 | 5 | 3 | 252 | 2 | 267 | 4.36e-71 | 221 |
MS.gene50831.t1 | MTR_4g009040 | 40.252 | 318 | 164 | 7 | 2 | 300 | 9 | 319 | 1.80e-70 | 221 |
MS.gene50831.t1 | MTR_4g009040 | 39.752 | 322 | 164 | 7 | 2 | 300 | 9 | 323 | 8.87e-70 | 219 |
MS.gene50831.t1 | MTR_1g022445 | 37.576 | 330 | 173 | 8 | 3 | 304 | 5 | 329 | 9.85e-70 | 219 |
MS.gene50831.t1 | MTR_4g009690 | 40.379 | 317 | 164 | 6 | 2 | 300 | 9 | 318 | 6.80e-63 | 202 |
MS.gene50831.t1 | MTR_2g028620 | 37.538 | 325 | 173 | 9 | 5 | 305 | 9 | 327 | 1.29e-61 | 199 |
MS.gene50831.t1 | MTR_4g009690 | 40.252 | 318 | 164 | 7 | 2 | 300 | 9 | 319 | 4.65e-61 | 197 |
MS.gene50831.t1 | MTR_4g092080 | 36.957 | 322 | 171 | 8 | 7 | 299 | 15 | 333 | 3.63e-57 | 187 |
MS.gene50831.t1 | MTR_3g011130 | 77.586 | 116 | 25 | 1 | 81 | 195 | 30 | 145 | 4.04e-55 | 176 |
MS.gene50831.t1 | MTR_7g074880 | 34.557 | 327 | 178 | 9 | 6 | 304 | 8 | 326 | 1.75e-54 | 180 |
MS.gene50831.t1 | MTR_2g028620 | 40.590 | 271 | 131 | 9 | 5 | 251 | 9 | 273 | 7.46e-54 | 178 |
MS.gene50831.t1 | MTR_7g074820 | 35.276 | 326 | 180 | 8 | 6 | 304 | 8 | 329 | 7.85e-54 | 179 |
MS.gene50831.t1 | MTR_4g081440 | 37.003 | 327 | 162 | 11 | 7 | 295 | 25 | 345 | 4.16e-53 | 177 |
MS.gene50831.t1 | MTR_4g081440 | 36.697 | 327 | 162 | 11 | 7 | 295 | 21 | 340 | 1.09e-52 | 176 |
MS.gene50831.t1 | MTR_7g074730 | 34.769 | 325 | 182 | 8 | 6 | 304 | 8 | 328 | 1.78e-52 | 175 |
MS.gene50831.t1 | MTR_7g074850 | 34.251 | 327 | 182 | 9 | 6 | 304 | 8 | 329 | 1.06e-51 | 173 |
MS.gene50831.t1 | MTR_0685s0030 | 62.393 | 117 | 44 | 0 | 143 | 259 | 1 | 117 | 3.64e-49 | 159 |
MS.gene50831.t1 | MTR_7g074710 | 35.294 | 272 | 152 | 6 | 6 | 256 | 8 | 276 | 3.98e-45 | 156 |
MS.gene50831.t1 | MTR_4g077150 | 40.553 | 217 | 74 | 6 | 62 | 276 | 2 | 165 | 1.16e-42 | 145 |
MS.gene50831.t1 | MTR_4g023730 | 33.571 | 280 | 156 | 7 | 2 | 256 | 4 | 278 | 9.00e-39 | 139 |
MS.gene50831.t1 | MTR_7g074870 | 31.250 | 288 | 169 | 9 | 41 | 304 | 6 | 288 | 1.38e-34 | 127 |
MS.gene50831.t1 | MTR_5g029990 | 27.869 | 305 | 184 | 8 | 1 | 284 | 7 | 296 | 1.29e-33 | 125 |
MS.gene50831.t1 | MTR_0164s0070 | 48.413 | 126 | 48 | 1 | 6 | 114 | 5 | 130 | 3.05e-33 | 121 |
MS.gene50831.t1 | MTR_1g099230 | 91.935 | 62 | 5 | 0 | 81 | 142 | 36 | 97 | 4.79e-32 | 117 |
MS.gene50831.t1 | MTR_6g406250 | 30.033 | 303 | 176 | 11 | 5 | 280 | 54 | 347 | 2.50e-31 | 120 |
MS.gene50831.t1 | MTR_6g406250 | 32.821 | 195 | 107 | 5 | 5 | 178 | 54 | 245 | 1.18e-26 | 105 |
MS.gene50831.t1 | MTR_2g013250 | 29.758 | 289 | 168 | 6 | 6 | 259 | 7 | 295 | 1.64e-26 | 107 |
MS.gene50831.t1 | MTR_2g013230 | 29.758 | 289 | 168 | 7 | 6 | 259 | 8 | 296 | 6.14e-25 | 102 |
MS.gene50831.t1 | MTR_7g117190 | 30.640 | 297 | 162 | 11 | 6 | 262 | 7 | 299 | 1.93e-23 | 98.6 |
MS.gene50831.t1 | MTR_2g013260 | 30.034 | 293 | 162 | 7 | 6 | 259 | 8 | 296 | 2.41e-23 | 97.8 |
MS.gene50831.t1 | MTR_2g013260 | 30.034 | 293 | 162 | 7 | 6 | 259 | 8 | 296 | 7.41e-23 | 97.4 |
MS.gene50831.t1 | MTR_7g117190 | 30.201 | 298 | 164 | 11 | 6 | 263 | 7 | 300 | 9.32e-23 | 96.3 |
MS.gene50831.t1 | MTR_8g062490 | 58.000 | 50 | 21 | 0 | 211 | 260 | 68 | 117 | 3.27e-12 | 63.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene50831.t1 | AT5G19440 | 71.384 | 318 | 75 | 1 | 5 | 306 | 9 | 326 | 7.22e-168 | 469 |
MS.gene50831.t1 | AT1G51410 | 68.770 | 317 | 83 | 1 | 6 | 306 | 9 | 325 | 2.31e-165 | 462 |
MS.gene50831.t1 | AT1G09510 | 50.470 | 319 | 142 | 1 | 2 | 304 | 4 | 322 | 2.55e-109 | 320 |
MS.gene50831.t1 | AT1G66800 | 51.118 | 313 | 133 | 2 | 5 | 301 | 7 | 315 | 6.13e-103 | 304 |
MS.gene50831.t1 | AT1G09480 | 48.882 | 313 | 144 | 1 | 5 | 301 | 7 | 319 | 3.74e-102 | 302 |
MS.gene50831.t1 | AT1G09490 | 48.562 | 313 | 145 | 1 | 5 | 301 | 7 | 319 | 8.12e-102 | 301 |
MS.gene50831.t1 | AT1G09480 | 48.882 | 313 | 144 | 1 | 5 | 301 | 54 | 366 | 8.77e-102 | 303 |
MS.gene50831.t1 | AT1G09500 | 48.903 | 319 | 144 | 3 | 5 | 304 | 7 | 325 | 2.72e-101 | 300 |
MS.gene50831.t1 | AT1G09500 | 50.000 | 272 | 119 | 1 | 5 | 259 | 7 | 278 | 1.78e-92 | 276 |
MS.gene50831.t1 | AT4G35420 | 44.654 | 318 | 155 | 5 | 6 | 305 | 8 | 322 | 8.00e-91 | 273 |
MS.gene50831.t1 | AT1G15950 | 46.326 | 313 | 151 | 6 | 3 | 301 | 10 | 319 | 3.12e-84 | 257 |
MS.gene50831.t1 | AT1G15950 | 46.326 | 313 | 151 | 6 | 3 | 301 | 10 | 319 | 3.12e-84 | 257 |
MS.gene50831.t1 | AT5G58490 | 43.125 | 320 | 160 | 5 | 5 | 305 | 8 | 324 | 2.95e-82 | 251 |
MS.gene50831.t1 | AT1G15950 | 45.752 | 306 | 149 | 6 | 3 | 294 | 10 | 312 | 1.43e-80 | 248 |
MS.gene50831.t1 | AT1G80820 | 44.127 | 315 | 159 | 6 | 1 | 301 | 3 | 314 | 7.84e-80 | 246 |
MS.gene50831.t1 | AT1G09500 | 45.296 | 287 | 138 | 3 | 37 | 304 | 5 | 291 | 1.81e-79 | 243 |
MS.gene50831.t1 | AT1G09490 | 44.444 | 279 | 139 | 1 | 39 | 301 | 10 | 288 | 3.32e-79 | 243 |
MS.gene50831.t1 | AT2G02400 | 37.963 | 324 | 175 | 7 | 1 | 304 | 1 | 318 | 2.21e-73 | 229 |
MS.gene50831.t1 | AT1G15950 | 47.037 | 270 | 127 | 5 | 3 | 259 | 10 | 276 | 4.93e-72 | 224 |
MS.gene50831.t1 | AT1G15950 | 46.403 | 278 | 132 | 6 | 3 | 267 | 10 | 283 | 7.94e-72 | 224 |
MS.gene50831.t1 | AT1G15950 | 47.547 | 265 | 123 | 5 | 6 | 257 | 13 | 274 | 2.42e-71 | 222 |
MS.gene50831.t1 | AT1G68540 | 38.435 | 294 | 161 | 4 | 8 | 282 | 6 | 298 | 8.21e-71 | 222 |
MS.gene50831.t1 | AT1G80820 | 44.485 | 272 | 135 | 5 | 1 | 259 | 3 | 271 | 2.94e-66 | 209 |
MS.gene50831.t1 | AT5G42800 | 37.695 | 321 | 175 | 6 | 6 | 304 | 8 | 325 | 7.15e-65 | 209 |
MS.gene50831.t1 | AT2G33590 | 39.185 | 319 | 169 | 6 | 6 | 305 | 9 | 321 | 4.05e-63 | 202 |
MS.gene50831.t1 | AT1G25460 | 38.225 | 293 | 161 | 5 | 8 | 282 | 6 | 296 | 4.32e-62 | 199 |
MS.gene50831.t1 | AT2G33600 | 40.062 | 322 | 162 | 8 | 6 | 305 | 9 | 321 | 1.14e-58 | 191 |
MS.gene50831.t1 | AT1G76470 | 40.252 | 318 | 159 | 9 | 6 | 299 | 7 | 317 | 2.39e-58 | 190 |
MS.gene50831.t1 | AT1G15950 | 44.395 | 223 | 120 | 4 | 81 | 301 | 1 | 221 | 1.99e-52 | 172 |
MS.gene50831.t1 | AT1G61720 | 34.356 | 326 | 180 | 7 | 3 | 300 | 10 | 329 | 3.53e-51 | 172 |
MS.gene50831.t1 | AT4G27250 | 33.232 | 328 | 182 | 9 | 7 | 303 | 14 | 335 | 1.25e-46 | 160 |
MS.gene50831.t1 | AT4G27250 | 33.234 | 337 | 180 | 11 | 7 | 303 | 14 | 345 | 2.80e-46 | 160 |
MS.gene50831.t1 | AT2G45400 | 32.573 | 307 | 182 | 5 | 3 | 284 | 37 | 343 | 1.76e-43 | 152 |
MS.gene50831.t1 | AT2G45400 | 33.929 | 280 | 160 | 5 | 3 | 257 | 37 | 316 | 2.94e-43 | 151 |
MS.gene50831.t1 | AT1G68540 | 38.021 | 192 | 116 | 3 | 93 | 282 | 1 | 191 | 1.65e-41 | 143 |
MS.gene50831.t1 | AT2G23910 | 29.478 | 268 | 170 | 5 | 7 | 259 | 11 | 274 | 7.51e-41 | 143 |
MS.gene50831.t1 | AT2G23910 | 29.699 | 266 | 168 | 5 | 7 | 257 | 11 | 272 | 9.60e-41 | 143 |
MS.gene50831.t1 | AT2G23910 | 29.478 | 268 | 170 | 5 | 7 | 259 | 11 | 274 | 1.35e-40 | 144 |
MS.gene50831.t1 | AT4G30470 | 29.412 | 272 | 174 | 5 | 2 | 259 | 6 | 273 | 2.93e-39 | 140 |
MS.gene50831.t1 | AT2G45400 | 36.073 | 219 | 117 | 4 | 3 | 198 | 37 | 255 | 1.11e-35 | 129 |
MS.gene50831.t1 | AT2G23910 | 28.761 | 226 | 142 | 5 | 49 | 259 | 19 | 240 | 1.44e-30 | 116 |
MS.gene50831.t1 | AT2G45400 | 29.259 | 270 | 168 | 4 | 38 | 284 | 17 | 286 | 1.89e-27 | 108 |
MS.gene50831.t1 | AT5G14700 | 25.965 | 285 | 178 | 10 | 5 | 262 | 54 | 332 | 3.04e-25 | 103 |
MS.gene50831.t1 | AT5G14700 | 27.397 | 219 | 132 | 7 | 2 | 197 | 51 | 265 | 1.11e-20 | 90.1 |
Find 64 sgRNAs with CRISPR-Local
Find 137 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTAGGGAGATACGTTTAATT+TGG | 0.229039 | 3.4:-912908 | None:intergenic |
CAAAGAAAAGGCAACGAGTT+TGG | 0.233787 | 3.4:+914541 | MS.gene50831:CDS |
ACCCATCCCAAAGTAGAATT+TGG | 0.245483 | 3.4:-913646 | None:intergenic |
CATTCTCGTATGCCAGAATA+TGG | 0.267945 | 3.4:-913693 | None:intergenic |
GCAATTCTAAACCTGATTAA+TGG | 0.275531 | 3.4:+913351 | MS.gene50831:CDS |
AATTATTAATCTTACTTCTC+TGG | 0.299337 | 3.4:-913811 | None:intergenic |
TAAAGAAAACAACATTGATA+TGG | 0.308617 | 3.4:+913263 | MS.gene50831:CDS |
AACATTTCCAAATTCTACTT+TGG | 0.318580 | 3.4:+913639 | MS.gene50831:CDS |
TTGCAGCAGCACTTGTGTTT+AGG | 0.321177 | 3.4:-913332 | None:intergenic |
TGTTGCAAATGCCCATATTC+TGG | 0.323215 | 3.4:+913681 | MS.gene50831:CDS |
GTAATTAATTACCATTAATC+AGG | 0.328588 | 3.4:-913362 | None:intergenic |
AAAGAAAAGGCAACGAGTTT+GGG | 0.334596 | 3.4:+914542 | MS.gene50831:CDS |
CAAGGCAAATCTACTTGAAC+AGG | 0.339055 | 3.4:+912621 | MS.gene50831:CDS |
GCCTTTGATTCTGCTGTTCA+AGG | 0.346135 | 3.4:+912646 | MS.gene50831:CDS |
ATTAACCCAGCAATGGTCAT+AGG | 0.359026 | 3.4:+913291 | MS.gene50831:CDS |
AACTGATATGTAGGCACATA+TGG | 0.371044 | 3.4:-914515 | None:intergenic |
AGCTAGTGGAAGACATTGTT+TGG | 0.373238 | 3.4:+913720 | MS.gene50831:CDS |
AGCAACGTTGTGTGTGTAAC+TGG | 0.375079 | 3.4:+912246 | MS.gene50831:CDS |
ACCAAGTGGTTGATCTTCTT+CGG | 0.375522 | 3.4:-912562 | None:intergenic |
ACATTTCCAAATTCTACTTT+GGG | 0.382077 | 3.4:+913640 | MS.gene50831:CDS |
AGAGGCCCTATGACCATTGC+TGG | 0.404733 | 3.4:-913297 | None:intergenic |
ATTATTAATCTTACTTCTCT+GGG | 0.410205 | 3.4:-913810 | None:intergenic |
GGGAATTGAATATACTCCTT+TGG | 0.411555 | 3.4:+914562 | MS.gene50831:CDS |
ACGTTTCAGTGATGGCGATT+TGG | 0.412461 | 3.4:-912782 | None:intergenic |
GTGTGTGTAACTGGCGCTTC+AGG | 0.413471 | 3.4:+912255 | MS.gene50831:CDS |
AACCACTTGGTTAAGCTTGA+AGG | 0.417225 | 3.4:+912574 | MS.gene50831:CDS |
CTTCAGGTTACATAGCTTCA+TGG | 0.422476 | 3.4:+912271 | MS.gene50831:CDS |
TCTTTGGAAAACTGATATGT+AGG | 0.433529 | 3.4:-914524 | None:intergenic |
TCCAAATTCTACTTTGGGAT+GGG | 0.448702 | 3.4:+913645 | MS.gene50831:CDS |
GGAGAGATTACAATTATTCA+AGG | 0.452632 | 3.4:+912603 | MS.gene50831:CDS |
CGCAACAGCAGCAGCAGAAG+AGG | 0.476034 | 3.4:-912815 | None:intergenic |
TTCCAAATTCTACTTTGGGA+TGG | 0.486039 | 3.4:+913644 | MS.gene50831:CDS |
GTCTCGTCAACAACAACATC+AGG | 0.489728 | 3.4:-912859 | None:intergenic |
TCCTTGATGCTCACTTCCAA+AGG | 0.501654 | 3.4:-914578 | None:intergenic |
TTTAGGACTGGTTGCAAGAG+AGG | 0.512693 | 3.4:-913315 | None:intergenic |
GCAGCACTTGTGTTTAGGAC+TGG | 0.518349 | 3.4:-913327 | None:intergenic |
TACGAGAATGCTTCAGCTAG+TGG | 0.518867 | 3.4:+913706 | MS.gene50831:CDS |
TCTGCTGTTCAAGGCTGTCA+AGG | 0.530516 | 3.4:+912655 | MS.gene50831:CDS |
GGTTAAGCTTGAAGGTGCTA+AGG | 0.535332 | 3.4:+912582 | MS.gene50831:CDS |
ATGTTGTTGTTGACGAGACT+TGG | 0.540828 | 3.4:+912863 | MS.gene50831:CDS |
TTAACCCAGCAATGGTCATA+GGG | 0.542832 | 3.4:+913292 | MS.gene50831:CDS |
ATTCTCGTATGCCAGAATAT+GGG | 0.546372 | 3.4:-913692 | None:intergenic |
GCCTTGAACAGCAGAATCAA+AGG | 0.555036 | 3.4:-912647 | None:intergenic |
AAGACAACACGTTTCAGTGA+TGG | 0.558880 | 3.4:-912790 | None:intergenic |
TGAATTACTTGGGTCGCGAA+CGG | 0.571601 | 3.4:-912337 | None:intergenic |
TTGAGAGTACCGTTGAGTGC+AGG | 0.577644 | 3.4:-912742 | None:intergenic |
CACCTTCAAGCTTAACCAAG+TGG | 0.579342 | 3.4:-912576 | None:intergenic |
CATTGGCTGAAGAAGCTGCA+TGG | 0.580278 | 3.4:+913232 | MS.gene50831:CDS |
CAGTGTAACCACGATGGAGA+AGG | 0.586371 | 3.4:-912305 | None:intergenic |
TTCTCTGGGAGTTGCAACGA+AGG | 0.598543 | 3.4:-913796 | None:intergenic |
ATTACTTGGGTCGCGAACGG+TGG | 0.610197 | 3.4:-912334 | None:intergenic |
TCCTTTGGAAGTGAGCATCA+AGG | 0.611448 | 3.4:+914577 | MS.gene50831:CDS |
TCCGAAGAAGATCAACCACT+TGG | 0.626562 | 3.4:+912561 | MS.gene50831:CDS |
ACAACAACATCAGGAGTTCG+AGG | 0.628925 | 3.4:-912850 | None:intergenic |
GAGGCCCTATGACCATTGCT+GGG | 0.631385 | 3.4:-913296 | None:intergenic |
GGTTACTATTAACCCAGCAA+TGG | 0.635018 | 3.4:+913284 | MS.gene50831:CDS |
TTGATTGATCCTGCACTCAA+CGG | 0.644648 | 3.4:+912733 | MS.gene50831:CDS |
GTTCGTTTCCTTCTCCATCG+TGG | 0.644846 | 3.4:+912297 | MS.gene50831:CDS |
ACTGTTTCAGCTGTGGTATG+CGG | 0.647792 | 3.4:+913200 | MS.gene50831:intron |
TCTCTGGGAGTTGCAACGAA+GGG | 0.653512 | 3.4:-913795 | None:intergenic |
TATATATGTTACCAGGTGTG+CGG | 0.694634 | 3.4:+914484 | MS.gene50831:intron |
CTTTAACAGTGTAACCACGA+TGG | 0.707935 | 3.4:-912311 | None:intergenic |
GTATGCGGTTTCGAAAACAT+TGG | 0.716031 | 3.4:+913215 | MS.gene50831:CDS |
AAGGCAAATCTACTTGAACA+GGG | 0.722044 | 3.4:+912622 | MS.gene50831:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATAATAATCAAATCAAACAT+AGG | - | chr3.4:912525-912544 | None:intergenic | 15.0% |
!! | ATTTATTACATGATTAATCA+TGG | - | chr3.4:913140-913159 | None:intergenic | 15.0% |
!! | TAATAATCAAATCAAACATA+GGG | - | chr3.4:912524-912543 | None:intergenic | 15.0% |
!! | TATAAATGTAAATACAGAAA+TGG | - | chr3.4:914410-914429 | None:intergenic | 15.0% |
!! | TATTTAATACATACAGAAAA+AGG | + | chr3.4:913993-914012 | MS.gene50831:intron | 15.0% |
!!! | AATTAAGTGTTTCTAAAATA+AGG | + | chr3.4:914286-914305 | MS.gene50831:intron | 15.0% |
!!! | TATGTTTGATTTGATTATTA+TGG | + | chr3.4:912524-912543 | MS.gene50831:intron | 15.0% |
!! | AATTATTAATCTTACTTCTC+TGG | - | chr3.4:913814-913833 | None:intergenic | 20.0% |
!! | ACGAAAAATTAAGTACAAAT+TGG | - | chr3.4:914244-914263 | None:intergenic | 20.0% |
!! | ATTATTAATCTTACTTCTCT+GGG | - | chr3.4:913813-913832 | None:intergenic | 20.0% |
!! | CCATTACAATAAAACAAAAA+TGG | - | chr3.4:913387-913406 | None:intergenic | 20.0% |
!! | GAAAAATTTCAACAATTTAG+AGG | + | chr3.4:914035-914054 | MS.gene50831:intron | 20.0% |
!! | GTAATTAATTACCATTAATC+AGG | - | chr3.4:913365-913384 | None:intergenic | 20.0% |
!! | TAAAATTCAATAAGCAACAA+TGG | - | chr3.4:913494-913513 | None:intergenic | 20.0% |
!! | TAAAGAAAACAACATTGATA+TGG | + | chr3.4:913263-913282 | MS.gene50831:CDS | 20.0% |
!!! | CCATTTTTGTTTTATTGTAA+TGG | + | chr3.4:913384-913403 | MS.gene50831:intron | 20.0% |
!!! | TGCACTTTTTAACATATATT+CGG | + | chr3.4:914086-914105 | MS.gene50831:intron | 20.0% |
! | AACATTTCCAAATTCTACTT+TGG | + | chr3.4:913639-913658 | MS.gene50831:CDS | 25.0% |
! | AAGTATAGCAACTTTAAATG+TGG | + | chr3.4:914311-914330 | MS.gene50831:intron | 25.0% |
! | AATTCAGTGCTAAAAATGAA+AGG | + | chr3.4:913935-913954 | MS.gene50831:intron | 25.0% |
! | ACATTTCCAAATTCTACTTT+GGG | + | chr3.4:913640-913659 | MS.gene50831:CDS | 25.0% |
! | ATGTATTAAATAAACAACCC+TGG | - | chr3.4:913985-914004 | None:intergenic | 25.0% |
! | ATTATGTTCCTAAATGAATG+CGG | + | chr3.4:913858-913877 | MS.gene50831:intron | 25.0% |
! | GGATATTAAACAACATTTGT+AGG | - | chr3.4:914342-914361 | None:intergenic | 25.0% |
! | TAACCATTAACCTATGATTT+CGG | - | chr3.4:914363-914382 | None:intergenic | 25.0% |
! | TACAGAAGACATAAAAATAG+AGG | - | chr3.4:914199-914218 | None:intergenic | 25.0% |
! | TCATATCAAACGAAAATAAC+AGG | - | chr3.4:913445-913464 | None:intergenic | 25.0% |
! | TGTTTAATATCCGAAATCAT+AGG | + | chr3.4:914350-914369 | MS.gene50831:intron | 25.0% |
!! | ACATTTAAAGTTGCTATACT+TGG | - | chr3.4:914312-914331 | None:intergenic | 25.0% |
!! | ATATCAGTTTTCCAAAGAAA+AGG | + | chr3.4:914529-914548 | MS.gene50831:CDS | 25.0% |
!! | GAAACCATGTTTTACATATT+GGG | - | chr3.4:914120-914139 | None:intergenic | 25.0% |
!! | TGAAACCATGTTTTACATAT+TGG | - | chr3.4:914121-914140 | None:intergenic | 25.0% |
!! | TGATTTTGTAAGTTTAGCTA+GGG | - | chr3.4:912928-912947 | None:intergenic | 25.0% |
AATAAGCAACAATGGATGTT+GGG | - | chr3.4:913486-913505 | None:intergenic | 30.0% | |
AGAGAAGAGAATGAATTACT+TGG | - | chr3.4:912351-912370 | None:intergenic | 30.0% | |
ATAAGAATCCGCATTCATTT+AGG | - | chr3.4:913869-913888 | None:intergenic | 30.0% | |
CATCACTAATATTTGATCCA+GGG | + | chr3.4:913965-913984 | MS.gene50831:intron | 30.0% | |
GAAGACATAAAAATAGAGGA+AGG | - | chr3.4:914195-914214 | None:intergenic | 30.0% | |
GAGAAGAGAATGAATTACTT+GGG | - | chr3.4:912350-912369 | None:intergenic | 30.0% | |
GCAATTCTAAACCTGATTAA+TGG | + | chr3.4:913351-913370 | MS.gene50831:CDS | 30.0% | |
GGAGAGATTACAATTATTCA+AGG | + | chr3.4:912603-912622 | MS.gene50831:CDS | 30.0% | |
GTTTCTATGTGCTTCAAATA+TGG | + | chr3.4:913544-913563 | MS.gene50831:intron | 30.0% | |
TACATGATTAATCATGGCAT+TGG | - | chr3.4:913134-913153 | None:intergenic | 30.0% | |
TATCCGAAATCATAGGTTAA+TGG | + | chr3.4:914357-914376 | MS.gene50831:intron | 30.0% | |
TCATCACTAATATTTGATCC+AGG | + | chr3.4:913964-913983 | MS.gene50831:intron | 30.0% | |
TCTTTGACATCATGATAGAA+GGG | - | chr3.4:912700-912719 | None:intergenic | 30.0% | |
TGTCAACTATATATGTTACC+AGG | + | chr3.4:914477-914496 | MS.gene50831:intron | 30.0% | |
TTTAACATATATTCGGCTTC+TGG | + | chr3.4:914093-914112 | MS.gene50831:intron | 30.0% | |
! | AGCAAGGACTAAATTGTTTT+TGG | + | chr3.4:913006-913025 | MS.gene50831:intron | 30.0% |
! | GTGATTTTGTAAGTTTAGCT+AGG | - | chr3.4:912929-912948 | None:intergenic | 30.0% |
! | TCTTTGGAAAACTGATATGT+AGG | - | chr3.4:914527-914546 | None:intergenic | 30.0% |
!!! | TAATGGTTTTGTTCCAATGT+CGG | + | chr3.4:913092-913111 | MS.gene50831:intron | 30.0% |
AAAGAAAAGGCAACGAGTTT+GGG | + | chr3.4:914542-914561 | MS.gene50831:CDS | 35.0% | |
AACTGATATGTAGGCACATA+TGG | - | chr3.4:914518-914537 | None:intergenic | 35.0% | |
AAGGCAAATCTACTTGAACA+GGG | + | chr3.4:912622-912641 | MS.gene50831:CDS | 35.0% | |
AATGAATGCGGATTCTTATC+TGG | + | chr3.4:913870-913889 | MS.gene50831:intron | 35.0% | |
ATAAGCAACAATGGATGTTG+GGG | - | chr3.4:913485-913504 | None:intergenic | 35.0% | |
ATGTTTGTGTACCTGTATCA+AGG | - | chr3.4:913624-913643 | None:intergenic | 35.0% | |
ATTCTCGTATGCCAGAATAT+GGG | - | chr3.4:913695-913714 | None:intergenic | 35.0% | |
CAAATATGGTTGTGTTCAAG+AGG | + | chr3.4:913558-913577 | MS.gene50831:intron | 35.0% | |
CAATAAGCAACAATGGATGT+TGG | - | chr3.4:913487-913506 | None:intergenic | 35.0% | |
CACTGAATTGAGTTTCAAAC+AGG | - | chr3.4:913924-913943 | None:intergenic | 35.0% | |
CCATAACATCTTCAATAGCA+AGG | + | chr3.4:912990-913009 | MS.gene50831:intron | 35.0% | |
CTAGGGAGATACGTTTAATT+TGG | - | chr3.4:912911-912930 | None:intergenic | 35.0% | |
GGGAATTGAATATACTCCTT+TGG | + | chr3.4:914562-914581 | MS.gene50831:CDS | 35.0% | |
GTCTTTGACATCATGATAGA+AGG | - | chr3.4:912701-912720 | None:intergenic | 35.0% | |
TATATATGTTACCAGGTGTG+CGG | + | chr3.4:914484-914503 | MS.gene50831:intron | 35.0% | |
TGGACCCAATATGTAAAACA+TGG | + | chr3.4:914113-914132 | MS.gene50831:intron | 35.0% | |
! | TTCACAGATGTTTTGCTACT+GGG | + | chr3.4:914137-914156 | MS.gene50831:intron | 35.0% |
! | TTCCAAATTCTACTTTGGGA+TGG | + | chr3.4:913644-913663 | MS.gene50831:CDS | 35.0% |
! | TTTCACAGATGTTTTGCTAC+TGG | + | chr3.4:914136-914155 | MS.gene50831:intron | 35.0% |
!! | CCTTGCTATTGAAGATGTTA+TGG | - | chr3.4:912993-913012 | None:intergenic | 35.0% |
!! | TCCAAATTCTACTTTGGGAT+GGG | + | chr3.4:913645-913664 | MS.gene50831:CDS | 35.0% |
AACCACTTGGTTAAGCTTGA+AGG | + | chr3.4:912574-912593 | MS.gene50831:CDS | 40.0% | |
AAGACAACACGTTTCAGTGA+TGG | - | chr3.4:912793-912812 | None:intergenic | 40.0% | |
ACCAAGTGGTTGATCTTCTT+CGG | - | chr3.4:912565-912584 | None:intergenic | 40.0% | |
ACCCATCCCAAAGTAGAATT+TGG | - | chr3.4:913649-913668 | None:intergenic | 40.0% | |
ACGGACATAGACACAAACAT+CGG | - | chr3.4:912485-912504 | None:intergenic | 40.0% | |
AGAGAGCTATTATCTGCAGA+AGG | - | chr3.4:913596-913615 | None:intergenic | 40.0% | |
AGCTAGTGGAAGACATTGTT+TGG | + | chr3.4:913720-913739 | MS.gene50831:CDS | 40.0% | |
ATCTTCTTCGGATCATCTAC+AGG | - | chr3.4:912553-912572 | None:intergenic | 40.0% | |
ATTAACCCAGCAATGGTCAT+AGG | + | chr3.4:913291-913310 | MS.gene50831:CDS | 40.0% | |
CAAAGAAAAGGCAACGAGTT+TGG | + | chr3.4:914541-914560 | MS.gene50831:CDS | 40.0% | |
CAAGGCAAATCTACTTGAAC+AGG | + | chr3.4:912621-912640 | MS.gene50831:CDS | 40.0% | |
CATTCTCGTATGCCAGAATA+TGG | - | chr3.4:913696-913715 | None:intergenic | 40.0% | |
CTTTAACAGTGTAACCACGA+TGG | - | chr3.4:912314-912333 | None:intergenic | 40.0% | |
GGTTACTATTAACCCAGCAA+TGG | + | chr3.4:913284-913303 | MS.gene50831:CDS | 40.0% | |
GTATGCGGTTTCGAAAACAT+TGG | + | chr3.4:913215-913234 | MS.gene50831:CDS | 40.0% | |
GTGCATAACATGCTAGCTAA+TGG | + | chr3.4:913075-913094 | MS.gene50831:intron | 40.0% | |
TGTTGCAAATGCCCATATTC+TGG | + | chr3.4:913681-913700 | MS.gene50831:CDS | 40.0% | |
TTAACCCAGCAATGGTCATA+GGG | + | chr3.4:913292-913311 | MS.gene50831:CDS | 40.0% | |
TTGATTGATCCTGCACTCAA+CGG | + | chr3.4:912733-912752 | MS.gene50831:CDS | 40.0% | |
TTGCTACTGGGTAACTTGAA+TGG | + | chr3.4:914149-914168 | MS.gene50831:intron | 40.0% | |
! | ATGTTGTTGTTGACGAGACT+TGG | + | chr3.4:912863-912882 | MS.gene50831:CDS | 40.0% |
! | CAAACTCGTTGCCTTTTCTT+TGG | - | chr3.4:914543-914562 | None:intergenic | 40.0% |
! | CTTCAGGTTACATAGCTTCA+TGG | + | chr3.4:912271-912290 | MS.gene50831:CDS | 40.0% |
!! | GATTAATCATGGCATTGGCA+TGG | - | chr3.4:913129-913148 | None:intergenic | 40.0% |
ACAACAACATCAGGAGTTCG+AGG | - | chr3.4:912853-912872 | None:intergenic | 45.0% | |
ACTGTTTCAGCTGTGGTATG+CGG | + | chr3.4:913200-913219 | MS.gene50831:intron | 45.0% | |
AGCAACGTTGTGTGTGTAAC+TGG | + | chr3.4:912246-912265 | MS.gene50831:CDS | 45.0% | |
CACCTTCAAGCTTAACCAAG+TGG | - | chr3.4:912579-912598 | None:intergenic | 45.0% | |
CATAGACACAAACATCGGAC+AGG | - | chr3.4:912480-912499 | None:intergenic | 45.0% | |
CATGTTATGCACTAGCGCAT+TGG | - | chr3.4:913067-913086 | None:intergenic | 45.0% | |
CCACAGCTGAAACAGTCAAT+AGG | - | chr3.4:913196-913215 | None:intergenic | 45.0% | |
CTCTCTCACTTCCTTGATAC+AGG | + | chr3.4:913610-913629 | MS.gene50831:intron | 45.0% | |
GATCAATCAACTCAGCCTGA+GGG | - | chr3.4:912723-912742 | None:intergenic | 45.0% | |
GCCTTGAACAGCAGAATCAA+AGG | - | chr3.4:912650-912669 | None:intergenic | 45.0% | |
GCCTTTGATTCTGCTGTTCA+AGG | + | chr3.4:912646-912665 | MS.gene50831:CDS | 45.0% | |
GGGTCAAAACGTATGAAGCA+CGG | - | chr3.4:912504-912523 | None:intergenic | 45.0% | |
GTCTCGTCAACAACAACATC+AGG | - | chr3.4:912862-912881 | None:intergenic | 45.0% | |
TACGAGAATGCTTCAGCTAG+TGG | + | chr3.4:913706-913725 | MS.gene50831:CDS | 45.0% | |
TCATGATGTCAAAGACCCTC+AGG | + | chr3.4:912705-912724 | MS.gene50831:intron | 45.0% | |
TCCGAAGAAGATCAACCACT+TGG | + | chr3.4:912561-912580 | MS.gene50831:CDS | 45.0% | |
TCCTTGATGCTCACTTCCAA+AGG | - | chr3.4:914581-914600 | None:intergenic | 45.0% | |
TGAATTACTTGGGTCGCGAA+CGG | - | chr3.4:912340-912359 | None:intergenic | 45.0% | |
TTGCAGCAGCACTTGTGTTT+AGG | - | chr3.4:913335-913354 | None:intergenic | 45.0% | |
! | ACGTTTCAGTGATGGCGATT+TGG | - | chr3.4:912785-912804 | None:intergenic | 45.0% |
! | CCTATTGACTGTTTCAGCTG+TGG | + | chr3.4:913193-913212 | MS.gene50831:intron | 45.0% |
! | TCCTTTGGAAGTGAGCATCA+AGG | + | chr3.4:914577-914596 | MS.gene50831:CDS | 45.0% |
!! | GGTTAAGCTTGAAGGTGCTA+AGG | + | chr3.4:912582-912601 | MS.gene50831:CDS | 45.0% |
!! | TTTAGGACTGGTTGCAAGAG+AGG | - | chr3.4:913318-913337 | None:intergenic | 45.0% |
CAGTGTAACCACGATGGAGA+AGG | - | chr3.4:912308-912327 | None:intergenic | 50.0% | |
GGATCAATCAACTCAGCCTG+AGG | - | chr3.4:912724-912743 | None:intergenic | 50.0% | |
GTTCGTTTCCTTCTCCATCG+TGG | + | chr3.4:912297-912316 | MS.gene50831:CDS | 50.0% | |
TCTGCTGTTCAAGGCTGTCA+AGG | + | chr3.4:912655-912674 | MS.gene50831:CDS | 50.0% | |
! | CATTGGCTGAAGAAGCTGCA+TGG | + | chr3.4:913232-913251 | MS.gene50831:CDS | 50.0% |
! | GCAGCACTTGTGTTTAGGAC+TGG | - | chr3.4:913330-913349 | None:intergenic | 50.0% |
! | TCTCTGGGAGTTGCAACGAA+GGG | - | chr3.4:913798-913817 | None:intergenic | 50.0% |
! | TTCTCTGGGAGTTGCAACGA+AGG | - | chr3.4:913799-913818 | None:intergenic | 50.0% |
!! | TTGAGAGTACCGTTGAGTGC+AGG | - | chr3.4:912745-912764 | None:intergenic | 50.0% |
AGAGGCCCTATGACCATTGC+TGG | - | chr3.4:913300-913319 | None:intergenic | 55.0% | |
ATTACTTGGGTCGCGAACGG+TGG | - | chr3.4:912337-912356 | None:intergenic | 55.0% | |
GAGGCCCTATGACCATTGCT+GGG | - | chr3.4:913299-913318 | None:intergenic | 55.0% | |
GGCACACACTTTGCCGACAT+TGG | - | chr3.4:913108-913127 | None:intergenic | 55.0% | |
GTGTGTGTAACTGGCGCTTC+AGG | + | chr3.4:912255-912274 | MS.gene50831:CDS | 55.0% | |
CGCAACAGCAGCAGCAGAAG+AGG | - | chr3.4:912818-912837 | None:intergenic | 60.0% | |
TGGCTTATCGTCCGCACACC+TGG | - | chr3.4:914498-914517 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.4 | gene | 912240 | 914643 | 912240 | ID=MS.gene50831 |
chr3.4 | mRNA | 912240 | 914643 | 912240 | ID=MS.gene50831.t1;Parent=MS.gene50831 |
chr3.4 | exon | 912240 | 912351 | 912240 | ID=MS.gene50831.t1.exon1;Parent=MS.gene50831.t1 |
chr3.4 | CDS | 912240 | 912351 | 912240 | ID=cds.MS.gene50831.t1;Parent=MS.gene50831.t1 |
chr3.4 | exon | 912557 | 912678 | 912557 | ID=MS.gene50831.t1.exon2;Parent=MS.gene50831.t1 |
chr3.4 | CDS | 912557 | 912678 | 912557 | ID=cds.MS.gene50831.t1;Parent=MS.gene50831.t1 |
chr3.4 | exon | 912727 | 912918 | 912727 | ID=MS.gene50831.t1.exon3;Parent=MS.gene50831.t1 |
chr3.4 | CDS | 912727 | 912918 | 912727 | ID=cds.MS.gene50831.t1;Parent=MS.gene50831.t1 |
chr3.4 | exon | 913210 | 913372 | 913210 | ID=MS.gene50831.t1.exon4;Parent=MS.gene50831.t1 |
chr3.4 | CDS | 913210 | 913372 | 913210 | ID=cds.MS.gene50831.t1;Parent=MS.gene50831.t1 |
chr3.4 | exon | 913632 | 913818 | 913632 | ID=MS.gene50831.t1.exon5;Parent=MS.gene50831.t1 |
chr3.4 | CDS | 913632 | 913818 | 913632 | ID=cds.MS.gene50831.t1;Parent=MS.gene50831.t1 |
chr3.4 | exon | 914499 | 914643 | 914499 | ID=MS.gene50831.t1.exon6;Parent=MS.gene50831.t1 |
chr3.4 | CDS | 914499 | 914643 | 914499 | ID=cds.MS.gene50831.t1;Parent=MS.gene50831.t1 |
Gene Sequence |
Protein sequence |