AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene50831


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene50831.t1 MTR_3g005210 93.789 322 4 1 1 306 1 322 0.0 611
MS.gene50831.t1 MTR_3g005170 86.250 320 28 1 3 306 7 326 0.0 563
MS.gene50831.t1 MTR_3g005170 86.139 303 27 1 4 306 8 295 0.0 529
MS.gene50831.t1 MTR_3g005170 86.081 273 22 1 3 259 7 279 8.76e-173 479
MS.gene50831.t1 MTR_8g062440 67.925 318 85 2 5 306 7 323 4.40e-160 449
MS.gene50831.t1 MTR_8g062440 67.712 319 85 3 5 306 7 324 4.94e-158 444
MS.gene50831.t1 MTR_8g062110 66.352 318 90 2 5 306 8 324 5.12e-156 439
MS.gene50831.t1 MTR_8g062110 66.352 318 90 2 5 306 17 333 7.28e-156 439
MS.gene50831.t1 MTR_4g077100 63.522 318 100 1 5 306 10 327 4.03e-154 434
MS.gene50831.t1 MTR_4g077130 62.462 325 103 2 1 306 1 325 6.57e-152 428
MS.gene50831.t1 MTR_8g062440 67.159 271 72 2 5 259 7 276 1.65e-129 372
MS.gene50831.t1 MTR_4g077100 63.100 271 84 1 5 259 10 280 6.81e-128 366
MS.gene50831.t1 MTR_8g062110 64.945 271 78 2 5 259 8 277 2.35e-127 365
MS.gene50831.t1 MTR_8g062110 64.945 271 78 2 5 259 8 277 2.65e-127 364
MS.gene50831.t1 MTR_8g062110 69.298 228 69 1 79 306 12 238 1.11e-114 331
MS.gene50831.t1 MTR_4g006940 47.419 310 146 6 6 301 17 323 8.72e-89 268
MS.gene50831.t1 MTR_5g072620 44.410 322 157 5 3 305 2 320 2.01e-87 265
MS.gene50831.t1 MTR_8g062110 67.956 181 57 1 79 259 12 191 4.70e-86 256
MS.gene50831.t1 MTR_2g104960 44.375 320 161 6 1 306 15 331 5.15e-84 256
MS.gene50831.t1 MTR_3g031650 40.810 321 168 5 3 304 2 319 5.31e-80 245
MS.gene50831.t1 MTR_5g056600 39.117 317 172 5 7 304 5 319 7.51e-80 245
MS.gene50831.t1 MTR_2g101330 41.139 316 162 6 6 301 5 316 1.43e-78 242
MS.gene50831.t1 MTR_1g022440 39.564 321 169 6 3 301 5 322 7.07e-77 238
MS.gene50831.t1 MTR_0685s0030 63.415 164 60 0 143 306 1 164 1.36e-75 229
MS.gene50831.t1 MTR_4g006940 47.566 267 124 5 6 259 17 280 2.18e-74 230
MS.gene50831.t1 MTR_4g006940 47.566 267 124 5 6 259 17 280 2.18e-74 230
MS.gene50831.t1 MTR_3g031650 42.751 269 132 5 3 252 2 267 4.36e-71 221
MS.gene50831.t1 MTR_4g009040 40.252 318 164 7 2 300 9 319 1.80e-70 221
MS.gene50831.t1 MTR_4g009040 39.752 322 164 7 2 300 9 323 8.87e-70 219
MS.gene50831.t1 MTR_1g022445 37.576 330 173 8 3 304 5 329 9.85e-70 219
MS.gene50831.t1 MTR_4g009690 40.379 317 164 6 2 300 9 318 6.80e-63 202
MS.gene50831.t1 MTR_2g028620 37.538 325 173 9 5 305 9 327 1.29e-61 199
MS.gene50831.t1 MTR_4g009690 40.252 318 164 7 2 300 9 319 4.65e-61 197
MS.gene50831.t1 MTR_4g092080 36.957 322 171 8 7 299 15 333 3.63e-57 187
MS.gene50831.t1 MTR_3g011130 77.586 116 25 1 81 195 30 145 4.04e-55 176
MS.gene50831.t1 MTR_7g074880 34.557 327 178 9 6 304 8 326 1.75e-54 180
MS.gene50831.t1 MTR_2g028620 40.590 271 131 9 5 251 9 273 7.46e-54 178
MS.gene50831.t1 MTR_7g074820 35.276 326 180 8 6 304 8 329 7.85e-54 179
MS.gene50831.t1 MTR_4g081440 37.003 327 162 11 7 295 25 345 4.16e-53 177
MS.gene50831.t1 MTR_4g081440 36.697 327 162 11 7 295 21 340 1.09e-52 176
MS.gene50831.t1 MTR_7g074730 34.769 325 182 8 6 304 8 328 1.78e-52 175
MS.gene50831.t1 MTR_7g074850 34.251 327 182 9 6 304 8 329 1.06e-51 173
MS.gene50831.t1 MTR_0685s0030 62.393 117 44 0 143 259 1 117 3.64e-49 159
MS.gene50831.t1 MTR_7g074710 35.294 272 152 6 6 256 8 276 3.98e-45 156
MS.gene50831.t1 MTR_4g077150 40.553 217 74 6 62 276 2 165 1.16e-42 145
MS.gene50831.t1 MTR_4g023730 33.571 280 156 7 2 256 4 278 9.00e-39 139
MS.gene50831.t1 MTR_7g074870 31.250 288 169 9 41 304 6 288 1.38e-34 127
MS.gene50831.t1 MTR_5g029990 27.869 305 184 8 1 284 7 296 1.29e-33 125
MS.gene50831.t1 MTR_0164s0070 48.413 126 48 1 6 114 5 130 3.05e-33 121
MS.gene50831.t1 MTR_1g099230 91.935 62 5 0 81 142 36 97 4.79e-32 117
MS.gene50831.t1 MTR_6g406250 30.033 303 176 11 5 280 54 347 2.50e-31 120
MS.gene50831.t1 MTR_6g406250 32.821 195 107 5 5 178 54 245 1.18e-26 105
MS.gene50831.t1 MTR_2g013250 29.758 289 168 6 6 259 7 295 1.64e-26 107
MS.gene50831.t1 MTR_2g013230 29.758 289 168 7 6 259 8 296 6.14e-25 102
MS.gene50831.t1 MTR_7g117190 30.640 297 162 11 6 262 7 299 1.93e-23 98.6
MS.gene50831.t1 MTR_2g013260 30.034 293 162 7 6 259 8 296 2.41e-23 97.8
MS.gene50831.t1 MTR_2g013260 30.034 293 162 7 6 259 8 296 7.41e-23 97.4
MS.gene50831.t1 MTR_7g117190 30.201 298 164 11 6 263 7 300 9.32e-23 96.3
MS.gene50831.t1 MTR_8g062490 58.000 50 21 0 211 260 68 117 3.27e-12 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene50831.t1 AT5G19440 71.384 318 75 1 5 306 9 326 7.22e-168 469
MS.gene50831.t1 AT1G51410 68.770 317 83 1 6 306 9 325 2.31e-165 462
MS.gene50831.t1 AT1G09510 50.470 319 142 1 2 304 4 322 2.55e-109 320
MS.gene50831.t1 AT1G66800 51.118 313 133 2 5 301 7 315 6.13e-103 304
MS.gene50831.t1 AT1G09480 48.882 313 144 1 5 301 7 319 3.74e-102 302
MS.gene50831.t1 AT1G09490 48.562 313 145 1 5 301 7 319 8.12e-102 301
MS.gene50831.t1 AT1G09480 48.882 313 144 1 5 301 54 366 8.77e-102 303
MS.gene50831.t1 AT1G09500 48.903 319 144 3 5 304 7 325 2.72e-101 300
MS.gene50831.t1 AT1G09500 50.000 272 119 1 5 259 7 278 1.78e-92 276
MS.gene50831.t1 AT4G35420 44.654 318 155 5 6 305 8 322 8.00e-91 273
MS.gene50831.t1 AT1G15950 46.326 313 151 6 3 301 10 319 3.12e-84 257
MS.gene50831.t1 AT1G15950 46.326 313 151 6 3 301 10 319 3.12e-84 257
MS.gene50831.t1 AT5G58490 43.125 320 160 5 5 305 8 324 2.95e-82 251
MS.gene50831.t1 AT1G15950 45.752 306 149 6 3 294 10 312 1.43e-80 248
MS.gene50831.t1 AT1G80820 44.127 315 159 6 1 301 3 314 7.84e-80 246
MS.gene50831.t1 AT1G09500 45.296 287 138 3 37 304 5 291 1.81e-79 243
MS.gene50831.t1 AT1G09490 44.444 279 139 1 39 301 10 288 3.32e-79 243
MS.gene50831.t1 AT2G02400 37.963 324 175 7 1 304 1 318 2.21e-73 229
MS.gene50831.t1 AT1G15950 47.037 270 127 5 3 259 10 276 4.93e-72 224
MS.gene50831.t1 AT1G15950 46.403 278 132 6 3 267 10 283 7.94e-72 224
MS.gene50831.t1 AT1G15950 47.547 265 123 5 6 257 13 274 2.42e-71 222
MS.gene50831.t1 AT1G68540 38.435 294 161 4 8 282 6 298 8.21e-71 222
MS.gene50831.t1 AT1G80820 44.485 272 135 5 1 259 3 271 2.94e-66 209
MS.gene50831.t1 AT5G42800 37.695 321 175 6 6 304 8 325 7.15e-65 209
MS.gene50831.t1 AT2G33590 39.185 319 169 6 6 305 9 321 4.05e-63 202
MS.gene50831.t1 AT1G25460 38.225 293 161 5 8 282 6 296 4.32e-62 199
MS.gene50831.t1 AT2G33600 40.062 322 162 8 6 305 9 321 1.14e-58 191
MS.gene50831.t1 AT1G76470 40.252 318 159 9 6 299 7 317 2.39e-58 190
MS.gene50831.t1 AT1G15950 44.395 223 120 4 81 301 1 221 1.99e-52 172
MS.gene50831.t1 AT1G61720 34.356 326 180 7 3 300 10 329 3.53e-51 172
MS.gene50831.t1 AT4G27250 33.232 328 182 9 7 303 14 335 1.25e-46 160
MS.gene50831.t1 AT4G27250 33.234 337 180 11 7 303 14 345 2.80e-46 160
MS.gene50831.t1 AT2G45400 32.573 307 182 5 3 284 37 343 1.76e-43 152
MS.gene50831.t1 AT2G45400 33.929 280 160 5 3 257 37 316 2.94e-43 151
MS.gene50831.t1 AT1G68540 38.021 192 116 3 93 282 1 191 1.65e-41 143
MS.gene50831.t1 AT2G23910 29.478 268 170 5 7 259 11 274 7.51e-41 143
MS.gene50831.t1 AT2G23910 29.699 266 168 5 7 257 11 272 9.60e-41 143
MS.gene50831.t1 AT2G23910 29.478 268 170 5 7 259 11 274 1.35e-40 144
MS.gene50831.t1 AT4G30470 29.412 272 174 5 2 259 6 273 2.93e-39 140
MS.gene50831.t1 AT2G45400 36.073 219 117 4 3 198 37 255 1.11e-35 129
MS.gene50831.t1 AT2G23910 28.761 226 142 5 49 259 19 240 1.44e-30 116
MS.gene50831.t1 AT2G45400 29.259 270 168 4 38 284 17 286 1.89e-27 108
MS.gene50831.t1 AT5G14700 25.965 285 178 10 5 262 54 332 3.04e-25 103
MS.gene50831.t1 AT5G14700 27.397 219 132 7 2 197 51 265 1.11e-20 90.1

Find 64 sgRNAs with CRISPR-Local

Find 137 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTAGGGAGATACGTTTAATT+TGG 0.229039 3.4:-912908 None:intergenic
CAAAGAAAAGGCAACGAGTT+TGG 0.233787 3.4:+914541 MS.gene50831:CDS
ACCCATCCCAAAGTAGAATT+TGG 0.245483 3.4:-913646 None:intergenic
CATTCTCGTATGCCAGAATA+TGG 0.267945 3.4:-913693 None:intergenic
GCAATTCTAAACCTGATTAA+TGG 0.275531 3.4:+913351 MS.gene50831:CDS
AATTATTAATCTTACTTCTC+TGG 0.299337 3.4:-913811 None:intergenic
TAAAGAAAACAACATTGATA+TGG 0.308617 3.4:+913263 MS.gene50831:CDS
AACATTTCCAAATTCTACTT+TGG 0.318580 3.4:+913639 MS.gene50831:CDS
TTGCAGCAGCACTTGTGTTT+AGG 0.321177 3.4:-913332 None:intergenic
TGTTGCAAATGCCCATATTC+TGG 0.323215 3.4:+913681 MS.gene50831:CDS
GTAATTAATTACCATTAATC+AGG 0.328588 3.4:-913362 None:intergenic
AAAGAAAAGGCAACGAGTTT+GGG 0.334596 3.4:+914542 MS.gene50831:CDS
CAAGGCAAATCTACTTGAAC+AGG 0.339055 3.4:+912621 MS.gene50831:CDS
GCCTTTGATTCTGCTGTTCA+AGG 0.346135 3.4:+912646 MS.gene50831:CDS
ATTAACCCAGCAATGGTCAT+AGG 0.359026 3.4:+913291 MS.gene50831:CDS
AACTGATATGTAGGCACATA+TGG 0.371044 3.4:-914515 None:intergenic
AGCTAGTGGAAGACATTGTT+TGG 0.373238 3.4:+913720 MS.gene50831:CDS
AGCAACGTTGTGTGTGTAAC+TGG 0.375079 3.4:+912246 MS.gene50831:CDS
ACCAAGTGGTTGATCTTCTT+CGG 0.375522 3.4:-912562 None:intergenic
ACATTTCCAAATTCTACTTT+GGG 0.382077 3.4:+913640 MS.gene50831:CDS
AGAGGCCCTATGACCATTGC+TGG 0.404733 3.4:-913297 None:intergenic
ATTATTAATCTTACTTCTCT+GGG 0.410205 3.4:-913810 None:intergenic
GGGAATTGAATATACTCCTT+TGG 0.411555 3.4:+914562 MS.gene50831:CDS
ACGTTTCAGTGATGGCGATT+TGG 0.412461 3.4:-912782 None:intergenic
GTGTGTGTAACTGGCGCTTC+AGG 0.413471 3.4:+912255 MS.gene50831:CDS
AACCACTTGGTTAAGCTTGA+AGG 0.417225 3.4:+912574 MS.gene50831:CDS
CTTCAGGTTACATAGCTTCA+TGG 0.422476 3.4:+912271 MS.gene50831:CDS
TCTTTGGAAAACTGATATGT+AGG 0.433529 3.4:-914524 None:intergenic
TCCAAATTCTACTTTGGGAT+GGG 0.448702 3.4:+913645 MS.gene50831:CDS
GGAGAGATTACAATTATTCA+AGG 0.452632 3.4:+912603 MS.gene50831:CDS
CGCAACAGCAGCAGCAGAAG+AGG 0.476034 3.4:-912815 None:intergenic
TTCCAAATTCTACTTTGGGA+TGG 0.486039 3.4:+913644 MS.gene50831:CDS
GTCTCGTCAACAACAACATC+AGG 0.489728 3.4:-912859 None:intergenic
TCCTTGATGCTCACTTCCAA+AGG 0.501654 3.4:-914578 None:intergenic
TTTAGGACTGGTTGCAAGAG+AGG 0.512693 3.4:-913315 None:intergenic
GCAGCACTTGTGTTTAGGAC+TGG 0.518349 3.4:-913327 None:intergenic
TACGAGAATGCTTCAGCTAG+TGG 0.518867 3.4:+913706 MS.gene50831:CDS
TCTGCTGTTCAAGGCTGTCA+AGG 0.530516 3.4:+912655 MS.gene50831:CDS
GGTTAAGCTTGAAGGTGCTA+AGG 0.535332 3.4:+912582 MS.gene50831:CDS
ATGTTGTTGTTGACGAGACT+TGG 0.540828 3.4:+912863 MS.gene50831:CDS
TTAACCCAGCAATGGTCATA+GGG 0.542832 3.4:+913292 MS.gene50831:CDS
ATTCTCGTATGCCAGAATAT+GGG 0.546372 3.4:-913692 None:intergenic
GCCTTGAACAGCAGAATCAA+AGG 0.555036 3.4:-912647 None:intergenic
AAGACAACACGTTTCAGTGA+TGG 0.558880 3.4:-912790 None:intergenic
TGAATTACTTGGGTCGCGAA+CGG 0.571601 3.4:-912337 None:intergenic
TTGAGAGTACCGTTGAGTGC+AGG 0.577644 3.4:-912742 None:intergenic
CACCTTCAAGCTTAACCAAG+TGG 0.579342 3.4:-912576 None:intergenic
CATTGGCTGAAGAAGCTGCA+TGG 0.580278 3.4:+913232 MS.gene50831:CDS
CAGTGTAACCACGATGGAGA+AGG 0.586371 3.4:-912305 None:intergenic
TTCTCTGGGAGTTGCAACGA+AGG 0.598543 3.4:-913796 None:intergenic
ATTACTTGGGTCGCGAACGG+TGG 0.610197 3.4:-912334 None:intergenic
TCCTTTGGAAGTGAGCATCA+AGG 0.611448 3.4:+914577 MS.gene50831:CDS
TCCGAAGAAGATCAACCACT+TGG 0.626562 3.4:+912561 MS.gene50831:CDS
ACAACAACATCAGGAGTTCG+AGG 0.628925 3.4:-912850 None:intergenic
GAGGCCCTATGACCATTGCT+GGG 0.631385 3.4:-913296 None:intergenic
GGTTACTATTAACCCAGCAA+TGG 0.635018 3.4:+913284 MS.gene50831:CDS
TTGATTGATCCTGCACTCAA+CGG 0.644648 3.4:+912733 MS.gene50831:CDS
GTTCGTTTCCTTCTCCATCG+TGG 0.644846 3.4:+912297 MS.gene50831:CDS
ACTGTTTCAGCTGTGGTATG+CGG 0.647792 3.4:+913200 MS.gene50831:intron
TCTCTGGGAGTTGCAACGAA+GGG 0.653512 3.4:-913795 None:intergenic
TATATATGTTACCAGGTGTG+CGG 0.694634 3.4:+914484 MS.gene50831:intron
CTTTAACAGTGTAACCACGA+TGG 0.707935 3.4:-912311 None:intergenic
GTATGCGGTTTCGAAAACAT+TGG 0.716031 3.4:+913215 MS.gene50831:CDS
AAGGCAAATCTACTTGAACA+GGG 0.722044 3.4:+912622 MS.gene50831:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATAATCAAATCAAACAT+AGG - chr3.4:912525-912544 None:intergenic 15.0%
!! ATTTATTACATGATTAATCA+TGG - chr3.4:913140-913159 None:intergenic 15.0%
!! TAATAATCAAATCAAACATA+GGG - chr3.4:912524-912543 None:intergenic 15.0%
!! TATAAATGTAAATACAGAAA+TGG - chr3.4:914410-914429 None:intergenic 15.0%
!! TATTTAATACATACAGAAAA+AGG + chr3.4:913993-914012 MS.gene50831:intron 15.0%
!!! AATTAAGTGTTTCTAAAATA+AGG + chr3.4:914286-914305 MS.gene50831:intron 15.0%
!!! TATGTTTGATTTGATTATTA+TGG + chr3.4:912524-912543 MS.gene50831:intron 15.0%
!! AATTATTAATCTTACTTCTC+TGG - chr3.4:913814-913833 None:intergenic 20.0%
!! ACGAAAAATTAAGTACAAAT+TGG - chr3.4:914244-914263 None:intergenic 20.0%
!! ATTATTAATCTTACTTCTCT+GGG - chr3.4:913813-913832 None:intergenic 20.0%
!! CCATTACAATAAAACAAAAA+TGG - chr3.4:913387-913406 None:intergenic 20.0%
!! GAAAAATTTCAACAATTTAG+AGG + chr3.4:914035-914054 MS.gene50831:intron 20.0%
!! GTAATTAATTACCATTAATC+AGG - chr3.4:913365-913384 None:intergenic 20.0%
!! TAAAATTCAATAAGCAACAA+TGG - chr3.4:913494-913513 None:intergenic 20.0%
!! TAAAGAAAACAACATTGATA+TGG + chr3.4:913263-913282 MS.gene50831:CDS 20.0%
!!! CCATTTTTGTTTTATTGTAA+TGG + chr3.4:913384-913403 MS.gene50831:intron 20.0%
!!! TGCACTTTTTAACATATATT+CGG + chr3.4:914086-914105 MS.gene50831:intron 20.0%
! AACATTTCCAAATTCTACTT+TGG + chr3.4:913639-913658 MS.gene50831:CDS 25.0%
! AAGTATAGCAACTTTAAATG+TGG + chr3.4:914311-914330 MS.gene50831:intron 25.0%
! AATTCAGTGCTAAAAATGAA+AGG + chr3.4:913935-913954 MS.gene50831:intron 25.0%
! ACATTTCCAAATTCTACTTT+GGG + chr3.4:913640-913659 MS.gene50831:CDS 25.0%
! ATGTATTAAATAAACAACCC+TGG - chr3.4:913985-914004 None:intergenic 25.0%
! ATTATGTTCCTAAATGAATG+CGG + chr3.4:913858-913877 MS.gene50831:intron 25.0%
! GGATATTAAACAACATTTGT+AGG - chr3.4:914342-914361 None:intergenic 25.0%
! TAACCATTAACCTATGATTT+CGG - chr3.4:914363-914382 None:intergenic 25.0%
! TACAGAAGACATAAAAATAG+AGG - chr3.4:914199-914218 None:intergenic 25.0%
! TCATATCAAACGAAAATAAC+AGG - chr3.4:913445-913464 None:intergenic 25.0%
! TGTTTAATATCCGAAATCAT+AGG + chr3.4:914350-914369 MS.gene50831:intron 25.0%
!! ACATTTAAAGTTGCTATACT+TGG - chr3.4:914312-914331 None:intergenic 25.0%
!! ATATCAGTTTTCCAAAGAAA+AGG + chr3.4:914529-914548 MS.gene50831:CDS 25.0%
!! GAAACCATGTTTTACATATT+GGG - chr3.4:914120-914139 None:intergenic 25.0%
!! TGAAACCATGTTTTACATAT+TGG - chr3.4:914121-914140 None:intergenic 25.0%
!! TGATTTTGTAAGTTTAGCTA+GGG - chr3.4:912928-912947 None:intergenic 25.0%
AATAAGCAACAATGGATGTT+GGG - chr3.4:913486-913505 None:intergenic 30.0%
AGAGAAGAGAATGAATTACT+TGG - chr3.4:912351-912370 None:intergenic 30.0%
ATAAGAATCCGCATTCATTT+AGG - chr3.4:913869-913888 None:intergenic 30.0%
CATCACTAATATTTGATCCA+GGG + chr3.4:913965-913984 MS.gene50831:intron 30.0%
GAAGACATAAAAATAGAGGA+AGG - chr3.4:914195-914214 None:intergenic 30.0%
GAGAAGAGAATGAATTACTT+GGG - chr3.4:912350-912369 None:intergenic 30.0%
GCAATTCTAAACCTGATTAA+TGG + chr3.4:913351-913370 MS.gene50831:CDS 30.0%
GGAGAGATTACAATTATTCA+AGG + chr3.4:912603-912622 MS.gene50831:CDS 30.0%
GTTTCTATGTGCTTCAAATA+TGG + chr3.4:913544-913563 MS.gene50831:intron 30.0%
TACATGATTAATCATGGCAT+TGG - chr3.4:913134-913153 None:intergenic 30.0%
TATCCGAAATCATAGGTTAA+TGG + chr3.4:914357-914376 MS.gene50831:intron 30.0%
TCATCACTAATATTTGATCC+AGG + chr3.4:913964-913983 MS.gene50831:intron 30.0%
TCTTTGACATCATGATAGAA+GGG - chr3.4:912700-912719 None:intergenic 30.0%
TGTCAACTATATATGTTACC+AGG + chr3.4:914477-914496 MS.gene50831:intron 30.0%
TTTAACATATATTCGGCTTC+TGG + chr3.4:914093-914112 MS.gene50831:intron 30.0%
! AGCAAGGACTAAATTGTTTT+TGG + chr3.4:913006-913025 MS.gene50831:intron 30.0%
! GTGATTTTGTAAGTTTAGCT+AGG - chr3.4:912929-912948 None:intergenic 30.0%
! TCTTTGGAAAACTGATATGT+AGG - chr3.4:914527-914546 None:intergenic 30.0%
!!! TAATGGTTTTGTTCCAATGT+CGG + chr3.4:913092-913111 MS.gene50831:intron 30.0%
AAAGAAAAGGCAACGAGTTT+GGG + chr3.4:914542-914561 MS.gene50831:CDS 35.0%
AACTGATATGTAGGCACATA+TGG - chr3.4:914518-914537 None:intergenic 35.0%
AAGGCAAATCTACTTGAACA+GGG + chr3.4:912622-912641 MS.gene50831:CDS 35.0%
AATGAATGCGGATTCTTATC+TGG + chr3.4:913870-913889 MS.gene50831:intron 35.0%
ATAAGCAACAATGGATGTTG+GGG - chr3.4:913485-913504 None:intergenic 35.0%
ATGTTTGTGTACCTGTATCA+AGG - chr3.4:913624-913643 None:intergenic 35.0%
ATTCTCGTATGCCAGAATAT+GGG - chr3.4:913695-913714 None:intergenic 35.0%
CAAATATGGTTGTGTTCAAG+AGG + chr3.4:913558-913577 MS.gene50831:intron 35.0%
CAATAAGCAACAATGGATGT+TGG - chr3.4:913487-913506 None:intergenic 35.0%
CACTGAATTGAGTTTCAAAC+AGG - chr3.4:913924-913943 None:intergenic 35.0%
CCATAACATCTTCAATAGCA+AGG + chr3.4:912990-913009 MS.gene50831:intron 35.0%
CTAGGGAGATACGTTTAATT+TGG - chr3.4:912911-912930 None:intergenic 35.0%
GGGAATTGAATATACTCCTT+TGG + chr3.4:914562-914581 MS.gene50831:CDS 35.0%
GTCTTTGACATCATGATAGA+AGG - chr3.4:912701-912720 None:intergenic 35.0%
TATATATGTTACCAGGTGTG+CGG + chr3.4:914484-914503 MS.gene50831:intron 35.0%
TGGACCCAATATGTAAAACA+TGG + chr3.4:914113-914132 MS.gene50831:intron 35.0%
! TTCACAGATGTTTTGCTACT+GGG + chr3.4:914137-914156 MS.gene50831:intron 35.0%
! TTCCAAATTCTACTTTGGGA+TGG + chr3.4:913644-913663 MS.gene50831:CDS 35.0%
! TTTCACAGATGTTTTGCTAC+TGG + chr3.4:914136-914155 MS.gene50831:intron 35.0%
!! CCTTGCTATTGAAGATGTTA+TGG - chr3.4:912993-913012 None:intergenic 35.0%
!! TCCAAATTCTACTTTGGGAT+GGG + chr3.4:913645-913664 MS.gene50831:CDS 35.0%
AACCACTTGGTTAAGCTTGA+AGG + chr3.4:912574-912593 MS.gene50831:CDS 40.0%
AAGACAACACGTTTCAGTGA+TGG - chr3.4:912793-912812 None:intergenic 40.0%
ACCAAGTGGTTGATCTTCTT+CGG - chr3.4:912565-912584 None:intergenic 40.0%
ACCCATCCCAAAGTAGAATT+TGG - chr3.4:913649-913668 None:intergenic 40.0%
ACGGACATAGACACAAACAT+CGG - chr3.4:912485-912504 None:intergenic 40.0%
AGAGAGCTATTATCTGCAGA+AGG - chr3.4:913596-913615 None:intergenic 40.0%
AGCTAGTGGAAGACATTGTT+TGG + chr3.4:913720-913739 MS.gene50831:CDS 40.0%
ATCTTCTTCGGATCATCTAC+AGG - chr3.4:912553-912572 None:intergenic 40.0%
ATTAACCCAGCAATGGTCAT+AGG + chr3.4:913291-913310 MS.gene50831:CDS 40.0%
CAAAGAAAAGGCAACGAGTT+TGG + chr3.4:914541-914560 MS.gene50831:CDS 40.0%
CAAGGCAAATCTACTTGAAC+AGG + chr3.4:912621-912640 MS.gene50831:CDS 40.0%
CATTCTCGTATGCCAGAATA+TGG - chr3.4:913696-913715 None:intergenic 40.0%
CTTTAACAGTGTAACCACGA+TGG - chr3.4:912314-912333 None:intergenic 40.0%
GGTTACTATTAACCCAGCAA+TGG + chr3.4:913284-913303 MS.gene50831:CDS 40.0%
GTATGCGGTTTCGAAAACAT+TGG + chr3.4:913215-913234 MS.gene50831:CDS 40.0%
GTGCATAACATGCTAGCTAA+TGG + chr3.4:913075-913094 MS.gene50831:intron 40.0%
TGTTGCAAATGCCCATATTC+TGG + chr3.4:913681-913700 MS.gene50831:CDS 40.0%
TTAACCCAGCAATGGTCATA+GGG + chr3.4:913292-913311 MS.gene50831:CDS 40.0%
TTGATTGATCCTGCACTCAA+CGG + chr3.4:912733-912752 MS.gene50831:CDS 40.0%
TTGCTACTGGGTAACTTGAA+TGG + chr3.4:914149-914168 MS.gene50831:intron 40.0%
! ATGTTGTTGTTGACGAGACT+TGG + chr3.4:912863-912882 MS.gene50831:CDS 40.0%
! CAAACTCGTTGCCTTTTCTT+TGG - chr3.4:914543-914562 None:intergenic 40.0%
! CTTCAGGTTACATAGCTTCA+TGG + chr3.4:912271-912290 MS.gene50831:CDS 40.0%
!! GATTAATCATGGCATTGGCA+TGG - chr3.4:913129-913148 None:intergenic 40.0%
ACAACAACATCAGGAGTTCG+AGG - chr3.4:912853-912872 None:intergenic 45.0%
ACTGTTTCAGCTGTGGTATG+CGG + chr3.4:913200-913219 MS.gene50831:intron 45.0%
AGCAACGTTGTGTGTGTAAC+TGG + chr3.4:912246-912265 MS.gene50831:CDS 45.0%
CACCTTCAAGCTTAACCAAG+TGG - chr3.4:912579-912598 None:intergenic 45.0%
CATAGACACAAACATCGGAC+AGG - chr3.4:912480-912499 None:intergenic 45.0%
CATGTTATGCACTAGCGCAT+TGG - chr3.4:913067-913086 None:intergenic 45.0%
CCACAGCTGAAACAGTCAAT+AGG - chr3.4:913196-913215 None:intergenic 45.0%
CTCTCTCACTTCCTTGATAC+AGG + chr3.4:913610-913629 MS.gene50831:intron 45.0%
GATCAATCAACTCAGCCTGA+GGG - chr3.4:912723-912742 None:intergenic 45.0%
GCCTTGAACAGCAGAATCAA+AGG - chr3.4:912650-912669 None:intergenic 45.0%
GCCTTTGATTCTGCTGTTCA+AGG + chr3.4:912646-912665 MS.gene50831:CDS 45.0%
GGGTCAAAACGTATGAAGCA+CGG - chr3.4:912504-912523 None:intergenic 45.0%
GTCTCGTCAACAACAACATC+AGG - chr3.4:912862-912881 None:intergenic 45.0%
TACGAGAATGCTTCAGCTAG+TGG + chr3.4:913706-913725 MS.gene50831:CDS 45.0%
TCATGATGTCAAAGACCCTC+AGG + chr3.4:912705-912724 MS.gene50831:intron 45.0%
TCCGAAGAAGATCAACCACT+TGG + chr3.4:912561-912580 MS.gene50831:CDS 45.0%
TCCTTGATGCTCACTTCCAA+AGG - chr3.4:914581-914600 None:intergenic 45.0%
TGAATTACTTGGGTCGCGAA+CGG - chr3.4:912340-912359 None:intergenic 45.0%
TTGCAGCAGCACTTGTGTTT+AGG - chr3.4:913335-913354 None:intergenic 45.0%
! ACGTTTCAGTGATGGCGATT+TGG - chr3.4:912785-912804 None:intergenic 45.0%
! CCTATTGACTGTTTCAGCTG+TGG + chr3.4:913193-913212 MS.gene50831:intron 45.0%
! TCCTTTGGAAGTGAGCATCA+AGG + chr3.4:914577-914596 MS.gene50831:CDS 45.0%
!! GGTTAAGCTTGAAGGTGCTA+AGG + chr3.4:912582-912601 MS.gene50831:CDS 45.0%
!! TTTAGGACTGGTTGCAAGAG+AGG - chr3.4:913318-913337 None:intergenic 45.0%
CAGTGTAACCACGATGGAGA+AGG - chr3.4:912308-912327 None:intergenic 50.0%
GGATCAATCAACTCAGCCTG+AGG - chr3.4:912724-912743 None:intergenic 50.0%
GTTCGTTTCCTTCTCCATCG+TGG + chr3.4:912297-912316 MS.gene50831:CDS 50.0%
TCTGCTGTTCAAGGCTGTCA+AGG + chr3.4:912655-912674 MS.gene50831:CDS 50.0%
! CATTGGCTGAAGAAGCTGCA+TGG + chr3.4:913232-913251 MS.gene50831:CDS 50.0%
! GCAGCACTTGTGTTTAGGAC+TGG - chr3.4:913330-913349 None:intergenic 50.0%
! TCTCTGGGAGTTGCAACGAA+GGG - chr3.4:913798-913817 None:intergenic 50.0%
! TTCTCTGGGAGTTGCAACGA+AGG - chr3.4:913799-913818 None:intergenic 50.0%
!! TTGAGAGTACCGTTGAGTGC+AGG - chr3.4:912745-912764 None:intergenic 50.0%
AGAGGCCCTATGACCATTGC+TGG - chr3.4:913300-913319 None:intergenic 55.0%
ATTACTTGGGTCGCGAACGG+TGG - chr3.4:912337-912356 None:intergenic 55.0%
GAGGCCCTATGACCATTGCT+GGG - chr3.4:913299-913318 None:intergenic 55.0%
GGCACACACTTTGCCGACAT+TGG - chr3.4:913108-913127 None:intergenic 55.0%
GTGTGTGTAACTGGCGCTTC+AGG + chr3.4:912255-912274 MS.gene50831:CDS 55.0%
CGCAACAGCAGCAGCAGAAG+AGG - chr3.4:912818-912837 None:intergenic 60.0%
TGGCTTATCGTCCGCACACC+TGG - chr3.4:914498-914517 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr3.4 gene 912240 914643 912240 ID=MS.gene50831
chr3.4 mRNA 912240 914643 912240 ID=MS.gene50831.t1;Parent=MS.gene50831
chr3.4 exon 912240 912351 912240 ID=MS.gene50831.t1.exon1;Parent=MS.gene50831.t1
chr3.4 CDS 912240 912351 912240 ID=cds.MS.gene50831.t1;Parent=MS.gene50831.t1
chr3.4 exon 912557 912678 912557 ID=MS.gene50831.t1.exon2;Parent=MS.gene50831.t1
chr3.4 CDS 912557 912678 912557 ID=cds.MS.gene50831.t1;Parent=MS.gene50831.t1
chr3.4 exon 912727 912918 912727 ID=MS.gene50831.t1.exon3;Parent=MS.gene50831.t1
chr3.4 CDS 912727 912918 912727 ID=cds.MS.gene50831.t1;Parent=MS.gene50831.t1
chr3.4 exon 913210 913372 913210 ID=MS.gene50831.t1.exon4;Parent=MS.gene50831.t1
chr3.4 CDS 913210 913372 913210 ID=cds.MS.gene50831.t1;Parent=MS.gene50831.t1
chr3.4 exon 913632 913818 913632 ID=MS.gene50831.t1.exon5;Parent=MS.gene50831.t1
chr3.4 CDS 913632 913818 913632 ID=cds.MS.gene50831.t1;Parent=MS.gene50831.t1
chr3.4 exon 914499 914643 914499 ID=MS.gene50831.t1.exon6;Parent=MS.gene50831.t1
chr3.4 CDS 914499 914643 914499 ID=cds.MS.gene50831.t1;Parent=MS.gene50831.t1
Gene Sequence

>MS.gene50831

ATGAACAGCAACGTTGTGTGTGTAACTGGCGCTTCAGGTTACATAGCTTCATGGCTCGTTCGTTTCCTTCTCCATCGTGGTTACACTGTTAAAGCCACCGTTCGCGACCCAAGTAATTCATTCTCTTCTCTTTTGATCTTTATAACACAAACACTTGTGATCAAAGATATTTCTAGTGTCAGACGTATAATTACACTGAATTAATTAAGTCATTGTTTAAAGTTAATGTGTCTATCTCCTGTCCGATGTTTGTGTCTATGTCCGTGCTTCATACGTTTTGACCCTATGTTTGATTTGATTATTATGGCTGCCTGTAGATGATCCGAAGAAGATCAACCACTTGGTTAAGCTTGAAGGTGCTAAGGAGAGATTACAATTATTCAAGGCAAATCTACTTGAACAGGGAGCCTTTGATTCTGCTGTTCAAGGCTGTCAAGGTGTCTTTCACACTGCATCTCCCTTCTATCATGATGTCAAAGACCCTCAGGCTGAGTTGATTGATCCTGCACTCAACGGTACTCTCAATGTTCTCAAATCATGTGCCAAATCGCCATCACTGAAACGTGTTGTCTTAACCTCTTCTGCTGCTGCTGTTGCGTACAATGAAAAGCCTCGAACTCCTGATGTTGTTGTTGACGAGACTTGGTTTACTGATGCTGATTTCTGTGCCAAATTAAACGTATCTCCCTAGCTAAACTTACAAAATCACACAATTTAGTCATAAAGTACATAAAAATTTGTCAATTTAGTCCATAACATCTTCAATAGCAAGGACTAAATTGTTTTTGGAGTTAGTGTTTCAATCTTAAATGTATCTTCTTCAGCCAATGCGCTAGTGCATAACATGCTAGCTAATGGTTTTGTTCCAATGTCGGCAAAGTGTGTGCCATGCCAATGCCATGATTAATCATGTAATAAATTATGCTATCATGCTCTTTGAATTCTTTCTATTTCCTATTGACTGTTTCAGCTGTGGTATGCGGTTTCGAAAACATTGGCTGAAGAAGCTGCATGGAAATTTGTTAAAGAAAACAACATTGATATGGTTACTATTAACCCAGCAATGGTCATAGGGCCTCTCTTGCAACCAGTCCTAAACACAAGTGCTGCTGCAATTCTAAACCTGATTAATGGTAATTAATTACCATTTTTGTTTTATTGTAATGGTAACAATTATTGTTGAGCTAGATGAGAGTATATTTCCTGTTATTTTCGTTTGATATGAGTATGACATCGATTTTTCCCCAACATCCATTGTTGCTTATTGAATTTTATTCTGTTTGCTATTTCAATGAATATTAGCAGTTTCTATGTGCTTCAAATATGGTTGTGTTCAAGAGGACAAGATTTTGTCCTTCTGCAGATAATAGCTCTCTCACTTCCTTGATACAGGTACACAAACATTTCCAAATTCTACTTTGGGATGGGTGTATGTGAAAGATGTTGCAAATGCCCATATTCTGGCATACGAGAATGCTTCAGCTAGTGGAAGACATTGTTTGGTTGAGAGTGTAGCGCACTACTCAGAAATTGTGAAGATTTTACGTGAACTGTACCCTTCGTTGCAACTCCCAGAGAAGTAAGATTAATAATTTCAATAACTGAAAGATTGCATATAATTATGTTCCTAAATGAATGCGGATTCTTATCTGGTGTGCGTCATTCTTTAAAGCTCTCTTTACCTGTTTGAAACTCAATTCAGTGCTAAAAATGAAAGGATTCAGTCATCACTAATATTTGATCCAGGGTTGTTTATTTAATACATACAGAAAAAGGTAATTAAGTGAAAAATGCAGAAAAATTTCAACAATTTAGAGGTTAACTACAGTATAACTTTTATTACTTTTGCACTTTTTAACATATATTCGGCTTCTGGACCCAATATGTAAAACATGGTTTCACAGATGTTTTGCTACTGGGTAACTTGAATGGCATGATCATGACTTTGCACACCTTCCTCTATTTTTATGTCTTCTGTAGATTAATTGTTATGCAAAATTGCCAATTTGTACTTAATTTTTCGTTTGAAATTGAAACTCATTACTTAATTAAGTGTTTCTAAAATAAGGCCAAGTATAGCAACTTTAAATGTGGCTAGTCCTACAAATGTTGTTTAATATCCGAAATCATAGGTTAATGGTTACTATAAAATGATTCATCATTCTGTCCATTTCTGTATTTACATTTATATATTTCTAGTTTAATTTGTTTAGATTTTTCTAATATCGTCTTCACTTTGTCAACTATATATGTTACCAGGTGTGCGGACGATAAGCCATATGTGCCTACATATCAGTTTTCCAAAGAAAAGGCAACGAGTTTGGGAATTGAATATACTCCTTTGGAAGTGAGCATCAAGGAAACTGTTGAAAGTTTGAAAGAAAAGAAGTTCGTCAACTTTTGA

Protein sequence

>MS.gene50831.t1

MNSNVVCVTGASGYIASWLVRFLLHRGYTVKATVRDPNDPKKINHLVKLEGAKERLQLFKANLLEQGAFDSAVQGCQGAELIDPALNGTLNVLKSCAKSPSLKRVVLTSSAAAVAYNEKPRTPDVVVDETWFTDADFCAKLNLWYAVSKTLAEEAAWKFVKENNIDMVTINPAMVIGPLLQPVLNTSAAAILNLINGTQTFPNSTLGWVYVKDVANAHILAYENASASGRHCLVESVAHYSEIVKILRELYPSLQLPEKCADDKPYVPTYQFSKEKATSLGIEYTPLEVSIKETVESLKEKKFVNF