AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene50830

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene50830.t1 MTR_3g005170 98.131 321 6 0 2 322 3 323 0.0 648
MS.gene50830.t1 MTR_3g005210 91.167 317 28 0 6 322 3 319 0.0 597
MS.gene50830.t1 MTR_3g005170 88.474 321 6 1 2 322 3 292 0.0 564
MS.gene50830.t1 MTR_3g005170 97.834 277 6 0 2 278 3 279 0.0 559
MS.gene50830.t1 MTR_8g062440 72.500 320 87 1 3 322 2 320 5.32e-173 485
MS.gene50830.t1 MTR_8g062110 71.118 322 92 1 1 322 1 321 1.64e-171 481
MS.gene50830.t1 MTR_8g062110 71.118 322 92 1 1 322 10 330 1.80e-171 481
MS.gene50830.t1 MTR_4g077100 68.323 322 102 0 1 322 3 324 1.95e-171 481
MS.gene50830.t1 MTR_8g062440 72.274 321 87 2 3 322 2 321 4.95e-171 480
MS.gene50830.t1 MTR_4g077130 68.012 322 103 0 1 322 1 322 4.22e-169 475
MS.gene50830.t1 MTR_4g077100 68.345 278 88 0 1 278 3 280 3.46e-146 415
MS.gene50830.t1 MTR_8g062110 71.223 278 79 1 1 278 1 277 3.93e-145 413
MS.gene50830.t1 MTR_8g062110 71.223 278 79 1 1 278 1 277 6.16e-145 412
MS.gene50830.t1 MTR_8g062440 66.026 312 97 2 3 306 2 312 2.86e-144 412
MS.gene50830.t1 MTR_8g062110 70.796 226 65 1 97 322 11 235 3.32e-116 337
MS.gene50830.t1 MTR_4g006940 50.633 316 147 6 7 320 15 323 2.43e-95 288
MS.gene50830.t1 MTR_5g072620 47.678 323 163 5 5 324 1 320 9.75e-93 281
MS.gene50830.t1 MTR_8g062110 70.879 182 52 1 97 278 11 191 6.31e-90 269
MS.gene50830.t1 MTR_2g104960 47.692 325 161 6 2 324 13 330 1.89e-89 273
MS.gene50830.t1 MTR_3g031650 42.947 319 176 5 5 320 1 316 4.11e-85 261
MS.gene50830.t1 MTR_2g101330 43.168 322 175 6 9 326 5 322 7.28e-85 261
MS.gene50830.t1 MTR_5g056600 41.009 317 180 6 10 322 5 318 2.28e-82 254
MS.gene50830.t1 MTR_4g006940 51.292 271 124 5 9 278 17 280 4.03e-81 249
MS.gene50830.t1 MTR_4g006940 51.292 271 124 5 9 278 17 280 4.03e-81 249
MS.gene50830.t1 MTR_1g022440 40.123 324 185 5 3 320 2 322 1.09e-80 251
MS.gene50830.t1 MTR_4g009040 42.994 314 169 7 9 319 13 319 1.31e-77 242
MS.gene50830.t1 MTR_3g031650 44.815 270 143 5 5 271 1 267 5.02e-77 239
MS.gene50830.t1 MTR_1g022445 38.138 333 193 6 3 327 2 329 2.97e-76 239
MS.gene50830.t1 MTR_4g009040 42.453 318 169 7 9 319 13 323 6.73e-76 238
MS.gene50830.t1 MTR_0685s0030 64.596 161 57 0 162 322 1 161 1.50e-74 229
MS.gene50830.t1 MTR_4g009690 43.131 313 169 6 9 319 13 318 1.15e-70 224
MS.gene50830.t1 MTR_2g028620 40.122 329 183 9 2 322 3 325 2.95e-69 221
MS.gene50830.t1 MTR_4g009690 42.994 314 169 7 9 319 13 319 5.32e-69 220
MS.gene50830.t1 MTR_4g092080 37.888 322 184 7 10 318 15 333 1.22e-61 201
MS.gene50830.t1 MTR_2g028620 43.321 277 143 9 2 270 3 273 1.28e-61 201
MS.gene50830.t1 MTR_7g074820 36.000 325 193 7 9 322 8 328 2.27e-58 193
MS.gene50830.t1 MTR_4g081440 37.576 330 171 10 10 314 21 340 2.40e-58 193
MS.gene50830.t1 MTR_4g081440 38.182 330 170 11 10 314 25 345 4.01e-58 193
MS.gene50830.t1 MTR_7g074880 34.356 326 194 8 9 322 8 325 4.23e-57 189
MS.gene50830.t1 MTR_3g011130 80.172 116 22 1 100 214 30 145 6.34e-56 180
MS.gene50830.t1 MTR_7g074850 34.663 326 196 8 9 322 8 328 4.12e-55 184
MS.gene50830.t1 MTR_7g074730 34.259 324 199 7 9 322 8 327 2.50e-54 182
MS.gene50830.t1 MTR_7g074710 37.132 272 163 5 9 275 8 276 8.28e-52 176
MS.gene50830.t1 MTR_0685s0030 63.248 117 43 0 162 278 1 117 1.51e-49 163
MS.gene50830.t1 MTR_4g077150 48.023 177 40 4 99 275 21 145 1.26e-45 154
MS.gene50830.t1 MTR_4g023730 34.752 282 168 7 4 275 3 278 5.36e-44 155
MS.gene50830.t1 MTR_0164s0070 53.175 126 58 1 9 133 5 130 3.25e-38 136
MS.gene50830.t1 MTR_7g074870 31.119 286 186 7 44 322 6 287 1.16e-37 137
MS.gene50830.t1 MTR_1g099230 95.161 62 3 0 100 161 36 97 4.88e-34 124
MS.gene50830.t1 MTR_6g406250 29.022 317 195 11 8 309 54 355 1.51e-32 125
MS.gene50830.t1 MTR_2g013250 31.741 293 173 6 9 278 7 295 3.06e-32 124
MS.gene50830.t1 MTR_5g029990 26.073 303 202 7 7 303 10 296 2.15e-30 118
MS.gene50830.t1 MTR_7g117190 31.987 297 174 9 9 281 7 299 3.08e-30 119
MS.gene50830.t1 MTR_2g013260 30.717 293 176 6 9 278 8 296 4.63e-30 117
MS.gene50830.t1 MTR_7g117190 31.410 312 181 10 9 296 7 309 8.32e-30 117
MS.gene50830.t1 MTR_2g013230 30.872 298 169 7 9 278 8 296 1.66e-29 117
MS.gene50830.t1 MTR_2g013260 30.104 289 183 5 9 278 8 296 2.04e-29 117
MS.gene50830.t1 MTR_6g406250 32.000 200 118 5 8 197 54 245 4.11e-27 108
MS.gene50830.t1 MTR_8g062710 46.250 80 32 2 9 88 20 88 8.77e-14 67.8
MS.gene50830.t1 MTR_8g062490 51.562 64 31 0 216 279 54 117 1.41e-13 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene50830.t1 AT5G19440 76.636 321 75 0 2 322 3 323 0.0 525
MS.gene50830.t1 AT1G51410 75.776 322 78 0 1 322 1 322 0.0 525
MS.gene50830.t1 AT1G09510 53.333 315 147 0 6 320 5 319 2.15e-120 352
MS.gene50830.t1 AT1G09480 53.968 315 145 0 6 320 5 319 7.29e-120 350
MS.gene50830.t1 AT1G09480 53.968 315 145 0 6 320 52 366 1.53e-119 351
MS.gene50830.t1 AT1G09490 53.651 315 146 0 6 320 5 319 1.03e-117 345
MS.gene50830.t1 AT1G66800 53.651 315 142 1 6 320 5 315 2.91e-112 331
MS.gene50830.t1 AT1G09500 52.201 318 149 3 6 320 5 322 4.76e-111 328
MS.gene50830.t1 AT1G09500 53.650 274 126 1 6 278 5 278 1.92e-101 301
MS.gene50830.t1 AT4G35420 46.106 321 168 4 9 327 8 325 1.00e-94 286
MS.gene50830.t1 AT1G09490 49.821 279 140 0 42 320 10 288 4.21e-94 283
MS.gene50830.t1 AT1G15950 48.137 322 158 6 1 320 5 319 8.82e-91 277
MS.gene50830.t1 AT1G15950 48.137 322 158 6 1 320 5 319 8.82e-91 277
MS.gene50830.t1 AT5G58490 46.177 327 170 5 1 324 1 324 1.39e-89 273
MS.gene50830.t1 AT1G09500 48.592 284 143 3 40 320 5 288 3.25e-88 268
MS.gene50830.t1 AT1G15950 47.619 315 156 6 1 313 5 312 4.14e-87 267
MS.gene50830.t1 AT1G80820 47.003 317 159 7 6 320 5 314 4.76e-86 264
MS.gene50830.t1 AT1G15950 48.746 279 135 5 1 278 5 276 1.26e-78 243
MS.gene50830.t1 AT1G15950 48.084 287 140 6 1 286 5 283 1.28e-78 244
MS.gene50830.t1 AT1G15950 48.736 277 134 5 1 276 5 274 5.33e-78 242
MS.gene50830.t1 AT2G02400 40.881 318 178 7 9 322 6 317 9.53e-78 243
MS.gene50830.t1 AT1G68540 41.077 297 165 5 11 301 6 298 5.76e-75 235
MS.gene50830.t1 AT1G80820 47.445 274 136 6 6 278 5 271 1.78e-72 227
MS.gene50830.t1 AT2G33590 41.325 317 177 6 9 322 9 319 3.00e-69 221
MS.gene50830.t1 AT5G42800 38.318 321 189 5 8 322 7 324 2.11e-67 218
MS.gene50830.t1 AT1G76470 42.722 316 170 9 9 318 7 317 6.33e-65 209
MS.gene50830.t1 AT2G33600 41.195 318 176 7 9 322 9 319 1.11e-63 206
MS.gene50830.t1 AT1G25460 37.380 313 191 5 11 320 6 316 3.64e-63 205
MS.gene50830.t1 AT1G61720 35.093 322 191 6 10 319 14 329 1.56e-55 186
MS.gene50830.t1 AT4G27250 35.366 328 191 9 10 322 14 335 2.65e-55 185
MS.gene50830.t1 AT4G27250 35.015 337 190 10 10 322 14 345 9.96e-55 184
MS.gene50830.t1 AT1G15950 44.395 223 120 4 100 320 1 221 9.99e-51 170
MS.gene50830.t1 AT2G45400 32.680 306 197 3 7 303 38 343 1.88e-46 162
MS.gene50830.t1 AT2G45400 33.692 279 176 3 7 276 38 316 1.21e-45 159
MS.gene50830.t1 AT2G23910 29.670 273 181 6 7 276 8 272 4.31e-42 149
MS.gene50830.t1 AT2G23910 29.670 273 181 6 7 276 8 272 4.81e-42 149
MS.gene50830.t1 AT2G23910 29.670 273 181 6 7 276 8 272 1.07e-41 149
MS.gene50830.t1 AT4G30470 29.617 287 190 6 7 290 8 285 1.47e-40 145
MS.gene50830.t1 AT2G45400 35.484 217 133 2 7 216 38 254 3.01e-38 138
MS.gene50830.t1 AT1G68540 36.979 192 118 3 112 301 1 191 1.05e-37 135
MS.gene50830.t1 AT2G23910 28.755 233 155 6 47 276 14 238 3.11e-31 120
MS.gene50830.t1 AT2G45400 29.259 270 184 2 41 303 17 286 1.39e-30 119
MS.gene50830.t1 AT5G14700 27.551 294 193 10 1 281 46 332 6.18e-29 115
MS.gene50830.t1 AT5G14700 29.778 225 144 7 1 216 46 265 3.33e-24 101

Find 100 sgRNAs with CRISPR-Local

Find 263 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCCATCCCAAACTAGAATT+TGG 0.171474 3.4:-899521 None:intergenic
GACATTTCCAAATTCTAGTT+TGG 0.253982 3.4:+899514 MS.gene50830:CDS
AACCAAGTGGTCAACCTTCT+TGG 0.257463 3.4:-898443 None:intergenic
CATTCTCGTACGCCAGAATA+TGG 0.258064 3.4:-899568 None:intergenic
ATTGCTGCTGTTGCGTATAA+TGG 0.272149 3.4:+898703 MS.gene50830:CDS
GCAATTCTAAACCTGATTAA+TGG 0.275531 3.4:+899023 MS.gene50830:CDS
AATTATTAATCTTACTTCTC+TGG 0.283324 3.4:-899686 None:intergenic
AGTTGAACCTTTGACTATCT+TGG 0.304852 3.4:+902219 MS.gene50830:CDS
TCTTTGGAAACCTGATATAT+AGG 0.308566 3.4:-900878 None:intergenic
TAAAGAAAACAACATTGATA+TGG 0.308617 3.4:+898935 MS.gene50830:CDS
CTTCAGGTTACATCGCTTCA+TGG 0.319947 3.4:+898044 MS.gene50830:CDS
TTGCAGCAGCACTTGTGTTT+AGG 0.321177 3.4:-899004 None:intergenic
TGTTGCAAATGCCCATATTC+TGG 0.323215 3.4:+899556 MS.gene50830:CDS
GTAATTAATTACCATTAATC+AGG 0.328588 3.4:-899034 None:intergenic
TACAAGATTCTGGAGCAATT+TGG 0.353417 3.4:+902132 MS.gene50830:intron
ATTAACCCAGCAATGGTCAT+AGG 0.359026 3.4:+898963 MS.gene50830:CDS
GCCTTTGATTCTGTTGTTCA+AGG 0.362009 3.4:+898526 MS.gene50830:CDS
GTCCTTGACATCATGATAGA+AGG 0.366719 3.4:-898578 None:intergenic
TGGTCATGTGGCATTCAAAC+TGG 0.369573 3.4:+902152 MS.gene50830:CDS
GTATGTGTGACTGGCGCTTC+AGG 0.374333 3.4:+898028 MS.gene50830:CDS
CCCATTTGGTCTCCTCAGTC+AGG 0.376067 3.4:-902310 None:intergenic
CCCCACTGTGAGCATGGTTC+TGG 0.383475 3.4:+902267 MS.gene50830:CDS
ACCAAGTGGTCAACCTTCTT+GGG 0.387248 3.4:-898442 None:intergenic
ACATTTCCAAATTCTAGTTT+GGG 0.393375 3.4:+899515 MS.gene50830:CDS
AGAGGCCCTATGACCATTGC+TGG 0.404733 3.4:-898969 None:intergenic
ATTATTAATCTTACTTCTCT+GGG 0.410205 3.4:-899685 None:intergenic
GGAGAGATTGCAACTGTTCA+AGG 0.418796 3.4:+898483 MS.gene50830:CDS
GCCGTATGTGCCTATATATC+AGG 0.426554 3.4:+900868 MS.gene50830:CDS
GGGACTTGAGTATACTCCTT+TGG 0.434471 3.4:+900916 MS.gene50830:CDS
GACCACTTGGTTAAGCTTGA+AGG 0.439383 3.4:+898454 MS.gene50830:CDS
AAGGTTCAACTGTAGGTTGA+TGG 0.444705 3.4:-902207 None:intergenic
AGATGGTGGATACGAGATGA+TGG 0.446678 3.4:-902183 None:intergenic
CAAAGAAAAGGCGAAAAGCT+TGG 0.447824 3.4:+900895 MS.gene50830:CDS
TCCCAAGAAGGTTGACCACT+TGG 0.453559 3.4:+898441 MS.gene50830:CDS
GAGAAAATGAGCAGCAACTT+GGG 0.454229 3.4:+897998 None:intergenic
AGACAAGACGTTTGAGTGAT+GGG 0.455678 3.4:-898669 None:intergenic
AAAGAAAAGGCGAAAAGCTT+GGG 0.461360 3.4:+900896 MS.gene50830:CDS
AGAGAAAATGAGCAGCAACT+TGG 0.464708 3.4:+897997 None:intergenic
TCCAAATTCTAGTTTGGGAT+GGG 0.474083 3.4:+899520 MS.gene50830:CDS
TTCCAAATTCTAGTTTGGGA+TGG 0.486809 3.4:+899519 MS.gene50830:CDS
ATATCAGGTTTCCAAAGAAA+AGG 0.488979 3.4:+900883 MS.gene50830:CDS
TTGAGAGTCCCTTTGAGAGC+AGG 0.491416 3.4:-898622 None:intergenic
ATTGTTTCAGCTGTGGTATG+TGG 0.496971 3.4:+898872 MS.gene50830:intron
ATTCTCGTACGCCAGAATAT+GGG 0.502026 3.4:-899567 None:intergenic
TTGATTGATCCTGCTCTCAA+AGG 0.509724 3.4:+898613 MS.gene50830:CDS
GTCTCATCGACAACAACATC+AGG 0.511018 3.4:-898739 None:intergenic
TTTAGGACTGGTTGCAAGAG+AGG 0.512693 3.4:-898987 None:intergenic
ACCTGATATATAGGCACATA+CGG 0.513032 3.4:-900869 None:intergenic
TGATTGATCCTGCTCTCAAA+GGG 0.514573 3.4:+898614 MS.gene50830:CDS
TCATGATGTCAAGGACCCTC+AGG 0.517650 3.4:+898585 MS.gene50830:CDS
GCAGCACTTGTGTTTAGGAC+TGG 0.518349 3.4:-898999 None:intergenic
AAGACAAGACGTTTGAGTGA+TGG 0.518377 3.4:-898670 None:intergenic
TCTGTTGTTCAAGGTTGTCA+TGG 0.518898 3.4:+898535 MS.gene50830:CDS
TACGAGAATGCTTCAGCTAG+TGG 0.527796 3.4:+899581 MS.gene50830:CDS
GTCCGATTGCTTCTTAATCG+TGG 0.529226 3.4:+898070 MS.gene50830:CDS
GATGGTGGATACGAGATGAT+GGG 0.529512 3.4:-902182 None:intergenic
GGTTAAGCTTGAAGGTGCTA+AGG 0.535332 3.4:+898462 MS.gene50830:CDS
ATTTGGTCTCCTCAGTCAGG+TGG 0.539336 3.4:-902307 None:intergenic
TCCTTGATGCTCACTTCCAA+AGG 0.541588 3.4:-900932 None:intergenic
TTAACCCAGCAATGGTCATA+GGG 0.542832 3.4:+898964 MS.gene50830:CDS
TGAGCATGGTTCTGGTACAA+TGG 0.547511 3.4:+902275 MS.gene50830:CDS
AGTTAACCCCACTGTGAGCA+TGG 0.549378 3.4:+902261 MS.gene50830:CDS
CAAGGCAAATCTACTTGAAG+AGG 0.550142 3.4:+898501 MS.gene50830:CDS
GGAAATGTTGTATGTGTGAC+TGG 0.550828 3.4:+898019 MS.gene50830:CDS
GAGCATGGTTCTGGTACAAT+GGG 0.559885 3.4:+902276 MS.gene50830:CDS
GACAAGACGTTTGAGTGATG+GGG 0.560252 3.4:-898668 None:intergenic
TCCCTTCTATCATGATGTCA+AGG 0.565747 3.4:+898576 MS.gene50830:CDS
AACTGTAGGTTGATGGAAGA+TGG 0.567391 3.4:-902200 None:intergenic
ACCTTGAACAACAGAATCAA+AGG 0.567407 3.4:-898527 None:intergenic
ATGGTGGATACGAGATGATG+GGG 0.569450 3.4:-902181 None:intergenic
ATGTTGTTGTCGATGAGACT+TGG 0.571264 3.4:+898743 MS.gene50830:CDS
TTTGGTCTCCTCAGTCAGGT+GGG 0.576603 3.4:-902306 None:intergenic
ATAGTCAAAGGTTCAACTGT+AGG 0.576968 3.4:-902214 None:intergenic
TTCGTCTCCAAGATAGTCAA+AGG 0.577414 3.4:-902226 None:intergenic
TCTGGAGCAATTTGGTCATG+TGG 0.579125 3.4:+902140 MS.gene50830:CDS
CATTGGCTGAAGAAGCTGCA+TGG 0.580278 3.4:+898904 MS.gene50830:CDS
TCCTTGACATCATGATAGAA+GGG 0.582694 3.4:-898577 None:intergenic
ACCAGAACCATGCTCACAGT+GGG 0.592739 3.4:-902268 None:intergenic
TTCTCTGGGAGTTGCAACGA+AGG 0.598543 3.4:-899671 None:intergenic
GTATGTGGTTTCAAAGACAT+TGG 0.606075 3.4:+898887 MS.gene50830:CDS
ACAACAACATCAGGAGTTCG+AGG 0.607925 3.4:-898730 None:intergenic
CACCTTCAAGCTTAACCAAG+TGG 0.608434 3.4:-898456 None:intergenic
GCCTGTAGATGATCCCAAGA+AGG 0.612585 3.4:+898429 MS.gene50830:intron
AGCCACGATTAAGAAGCAAT+CGG 0.615772 3.4:-898072 None:intergenic
TCCTTTGGAAGTGAGCATCA+AGG 0.622590 3.4:+900931 MS.gene50830:CDS
CACACTACTCAGAAGTTGTG+AGG 0.628161 3.4:+899630 MS.gene50830:CDS
AATACTTGGATCGCGAACGG+TGG 0.629535 3.4:-898107 None:intergenic
GAGGCCCTATGACCATTGCT+GGG 0.631385 3.4:-898968 None:intergenic
GGATCAATCAATTCAGCCTG+AGG 0.632382 3.4:-898601 None:intergenic
GGTTACTATTAACCCAGCAA+TGG 0.635018 3.4:+898956 MS.gene50830:CDS
TGGTGGATACGAGATGATGG+GGG 0.640636 3.4:-902180 None:intergenic
ACAAATACTTGGATCGCGAA+CGG 0.645774 3.4:-898110 None:intergenic
TCTCTGGGAGTTGCAACGAA+GGG 0.653512 3.4:-899670 None:intergenic
AAGGCAAATCTACTTGAAGA+GGG 0.656212 3.4:+898502 MS.gene50830:CDS
GCAGACATCCCACCTGACTG+AGG 0.672248 3.4:+902298 MS.gene50830:CDS
AACTATGTTTACCAGATGTG+CGG 0.691679 3.4:+900838 MS.gene50830:intron
GATCAATCAATTCAGCCTGA+GGG 0.692249 3.4:-898600 None:intergenic
TACCAGAACCATGCTCACAG+TGG 0.694449 3.4:-902269 None:intergenic
TGTAGGTTGATGGAAGATGG+TGG 0.699035 3.4:-902197 None:intergenic
CCAGAACCATGCTCACAGTG+GGG 0.728251 3.4:-902267 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTATAAATCATTTACAAA+AGG - chr3.4:901948-901967 None:intergenic 10.0%
!! ATTATAAATCATTTACAAAA+GGG - chr3.4:901947-901966 None:intergenic 10.0%
!! GTAAAAGAATGTTTATATAA+CGG - chr3.4:901802-901821 None:intergenic 15.0%
!! TAAGAAAAATATCACTTAAT+TGG - chr3.4:901887-901906 None:intergenic 15.0%
!! TATAAATGTAAATACAGAAA+CGG - chr3.4:900755-900774 None:intergenic 15.0%
!! TGCAAATAGTTAATTAATTT+GGG - chr3.4:901538-901557 None:intergenic 15.0%
!! TTGCAAATAGTTAATTAATT+TGG - chr3.4:901539-901558 None:intergenic 15.0%
!!! ATTAAGTGTTTCTAAAAATA+CGG + chr3.4:900628-900647 MS.gene50830:intron 15.0%
!!! TTGAAAAGATAAGTTATTTT+GGG - chr3.4:901644-901663 None:intergenic 15.0%
!!! TTTGAAAAGATAAGTTATTT+TGG - chr3.4:901645-901664 None:intergenic 15.0%
!! AAGTGTAGTTAATATTGTAT+GGG - chr3.4:901978-901997 None:intergenic 20.0%
!! AATAGAATCTCTCAAAATAA+GGG + chr3.4:899984-900003 MS.gene50830:intron 20.0%
!! AATTATTAATCTTACTTCTC+TGG - chr3.4:899689-899708 None:intergenic 20.0%
!! AATTCAATATAATTTCAGTC+CGG - chr3.4:898275-898294 None:intergenic 20.0%
!! ACTATCATATAGTTAAAGTA+TGG + chr3.4:900187-900206 MS.gene50830:intron 20.0%
!! ACTATTTATAGTTTACATTG+TGG + chr3.4:901609-901628 MS.gene50830:intron 20.0%
!! ATTATTAATCTTACTTCTCT+GGG - chr3.4:899688-899707 None:intergenic 20.0%
!! CAATTTAATGCTAAAATGAA+AGG + chr3.4:899810-899829 MS.gene50830:intron 20.0%
!! CTATCATATAGTTAAAGTAT+GGG + chr3.4:900188-900207 MS.gene50830:intron 20.0%
!! GGTTTAAATTAAATCTAGAT+TGG + chr3.4:901075-901094 MS.gene50830:intron 20.0%
!! GTAATTAATTACCATTAATC+AGG - chr3.4:899037-899056 None:intergenic 20.0%
!! TAAAGAAAACAACATTGATA+TGG + chr3.4:898935-898954 MS.gene50830:CDS 20.0%
!! TTTACATAACAAGATTGTAA+AGG + chr3.4:899952-899971 MS.gene50830:intron 20.0%
!!! AAATAAAGCTTTAAAGAATG+TGG - chr3.4:899776-899795 None:intergenic 20.0%
!!! AAGCTTTCTAAACAATTTTA+TGG + chr3.4:902105-902124 MS.gene50830:intron 20.0%
!!! AATAGTTAATTAATTTGGGA+TGG - chr3.4:901534-901553 None:intergenic 20.0%
!!! ATAACTTATCTTTTCAAACA+AGG + chr3.4:901647-901666 MS.gene50830:intron 20.0%
!!! GTGTTTTGGTTATTATTTTA+GGG + chr3.4:901176-901195 MS.gene50830:intron 20.0%
!!! GTTAAAAAGTACAGAAATAA+TGG - chr3.4:900395-900414 None:intergenic 20.0%
!!! TAACGAATATTTTCAATTGA+TGG + chr3.4:901579-901598 MS.gene50830:intron 20.0%
!!! TCATGGATTGAAATTATTAT+TGG + chr3.4:898310-898329 MS.gene50830:intron 20.0%
!!! TGTACTGAATTTTTCATTTT+GGG + chr3.4:900593-900612 MS.gene50830:intron 20.0%
!!! TGTGTTTTGGTTATTATTTT+AGG + chr3.4:901175-901194 MS.gene50830:intron 20.0%
!!! TTGTACTGAATTTTTCATTT+TGG + chr3.4:900592-900611 MS.gene50830:intron 20.0%
! AAACTCAAGTATGTGAAATA+AGG + chr3.4:901054-901073 MS.gene50830:intron 25.0%
! AAAGGGTAATAAATAGTTGA+TGG - chr3.4:901915-901934 None:intergenic 25.0%
! AATTGAAAGCTACTAAAAGT+AGG + chr3.4:899168-899187 MS.gene50830:intron 25.0%
! ACAAAAGGGAGAAAAAAAAA+AGG - chr3.4:901933-901952 None:intergenic 25.0%
! ATAACACCTTCTATCATATT+GGG + chr3.4:900489-900508 MS.gene50830:intron 25.0%
! ATTAAATCTAGATTGGTACT+AGG + chr3.4:901082-901101 MS.gene50830:intron 25.0%
! ATTCAATATAATTTCAGTCC+GGG - chr3.4:898274-898293 None:intergenic 25.0%
! ATTGAAAGCTACTAAAAGTA+GGG + chr3.4:899169-899188 MS.gene50830:intron 25.0%
! ATTGAAATTATTATTGGTGG+TGG + chr3.4:898316-898335 MS.gene50830:intron 25.0%
! CAAAAGGGAGAAAAAAAAAA+GGG - chr3.4:901932-901951 None:intergenic 25.0%
! CAAGTGTAGTTAATATTGTA+TGG - chr3.4:901979-901998 None:intergenic 25.0%
! CAATAGAATCTCTCAAAATA+AGG + chr3.4:899983-900002 MS.gene50830:intron 25.0%
! GAAAGAAAAAGACAAATACT+TGG - chr3.4:898124-898143 None:intergenic 25.0%
! GAGTATAAAACAACATTTCT+AGG - chr3.4:900675-900694 None:intergenic 25.0%
! TATAACACCTTCTATCATAT+TGG + chr3.4:900488-900507 MS.gene50830:intron 25.0%
! TATTAGGAACTAAAACAAAG+TGG - chr3.4:901354-901373 None:intergenic 25.0%
! TCTTTAATGTATACGGAAAA+AGG + chr3.4:899868-899887 MS.gene50830:intron 25.0%
! TGGATTGAAATTATTATTGG+TGG + chr3.4:898313-898332 MS.gene50830:intron 25.0%
!! AAGACGAAATATATTTTACC+AGG + chr3.4:901757-901776 MS.gene50830:intron 25.0%
!! AATAAGGGAAAGTACATTAA+TGG + chr3.4:899999-900018 MS.gene50830:intron 25.0%
!! ACAAGGAAAATTTAAAGCAA+AGG + chr3.4:901664-901683 MS.gene50830:intron 25.0%
!! GTTTTATACTCGAAAATCAT+AGG + chr3.4:900684-900703 MS.gene50830:intron 25.0%
!! TCTCAAATTATAAGTCGTTT+TGG + chr3.4:901822-901841 MS.gene50830:intron 25.0%
!! TGTCTATTTCCTTTAATTTC+TGG + chr3.4:899259-899278 MS.gene50830:intron 25.0%
!! TTGAGTTTTTCCAAGTTATT+AGG - chr3.4:901370-901389 None:intergenic 25.0%
!!! ACATTTCCAAATTCTAGTTT+GGG + chr3.4:899515-899534 MS.gene50830:CDS 25.0%
!!! GGTTGTTTCTTTAATGTATA+CGG + chr3.4:899861-899880 MS.gene50830:intron 25.0%
!!! TGTTTTAGTTCCTAATAACT+TGG + chr3.4:901357-901376 MS.gene50830:intron 25.0%
AAAGACTACAAACGAAAGTA+TGG + chr3.4:901696-901715 MS.gene50830:intron 30.0%
AACAACAAGCCAGAAATTAA+AGG - chr3.4:899271-899290 None:intergenic 30.0%
AACATGAGCTATAAATCGAA+AGG - chr3.4:900347-900366 None:intergenic 30.0%
AACATGGAGACACAAATTAA+AGG - chr3.4:900994-901013 None:intergenic 30.0%
AAGTTACCCAATATGATAGA+AGG - chr3.4:900498-900517 None:intergenic 30.0%
AATGATCACAATGAAAAACG+CGG + chr3.4:902012-902031 MS.gene50830:intron 30.0%
ACAATGAAGCTAGAAATAAC+AGG - chr3.4:899351-899370 None:intergenic 30.0%
ACAGAATGATGAATCATGTA+GGG - chr3.4:900732-900751 None:intergenic 30.0%
ACTCGAAAATCATAGGTTAA+TGG + chr3.4:900691-900710 MS.gene50830:intron 30.0%
ATAAGTCATTCTTCATGGTT+TGG + chr3.4:901112-901131 MS.gene50830:intron 30.0%
ATAGAGAACATATCAACTAG+GGG - chr3.4:900164-900183 None:intergenic 30.0%
ATATCAGGTTTCCAAAGAAA+AGG + chr3.4:900883-900902 MS.gene50830:CDS 30.0%
ATTGATTATACAGACCAAGT+TGG - chr3.4:900097-900116 None:intergenic 30.0%
CAAATATGTTTGTGTTCAAG+AGG + chr3.4:899430-899449 MS.gene50830:intron 30.0%
CTGAAATAAGTCATTCTTCA+TGG + chr3.4:901107-901126 MS.gene50830:intron 30.0%
GATAGAGAACATATCAACTA+GGG - chr3.4:900165-900184 None:intergenic 30.0%
GCAATTCTAAACCTGATTAA+TGG + chr3.4:899023-899042 MS.gene50830:CDS 30.0%
GTTGAATATGAAGCTTATTC+AGG + chr3.4:901720-901739 MS.gene50830:intron 30.0%
TAACTATAATCACCTTCTAG+CGG + chr3.4:900050-900069 MS.gene50830:intron 30.0%
TACAGAAGACACAAAAATAG+AGG - chr3.4:900545-900564 None:intergenic 30.0%
TATATTCTATGCATCCAACT+TGG + chr3.4:900080-900099 MS.gene50830:intron 30.0%
TATGAAAGGGAAAAAGAAAG+TGG + chr3.4:901319-901338 MS.gene50830:intron 30.0%
TGATAGAGAACATATCAACT+AGG - chr3.4:900166-900185 None:intergenic 30.0%
TTATGGTCTTTACAAGATTC+TGG + chr3.4:902122-902141 MS.gene50830:intron 30.0%
! AATATGTATGTGTCCTGTTT+TGG + chr3.4:898340-898359 MS.gene50830:intron 30.0%
! AGTTAAGGTAATCTGTGTTT+TGG + chr3.4:901162-901181 MS.gene50830:intron 30.0%
! CAATCTTGTTATGTAAAGCA+AGG - chr3.4:899949-899968 None:intergenic 30.0%
! CATTGCTAATAGTTGATTCA+GGG + chr3.4:899840-899859 MS.gene50830:intron 30.0%
! CTTTCTAGCAATTCTGAAAA+GGG - chr3.4:901205-901224 None:intergenic 30.0%
! GACATTTCCAAATTCTAGTT+TGG + chr3.4:899514-899533 MS.gene50830:CDS 30.0%
! TAATTAATTTGGGATGGAGA+GGG - chr3.4:901528-901547 None:intergenic 30.0%
! TCATTGCTAATAGTTGATTC+AGG + chr3.4:899839-899858 MS.gene50830:intron 30.0%
! TCTTTCTAGCAATTCTGAAA+AGG - chr3.4:901206-901225 None:intergenic 30.0%
! TCTTTGGAAACCTGATATAT+AGG - chr3.4:900881-900900 None:intergenic 30.0%
! TTAATTAATTTGGGATGGAG+AGG - chr3.4:901529-901548 None:intergenic 30.0%
! TTTCTAGCAATTCTGAAAAG+GGG - chr3.4:901204-901223 None:intergenic 30.0%
!! AAAACAACATTTCTAGGACT+TGG - chr3.4:900669-900688 None:intergenic 30.0%
!! AATTCAAAACCGTTTTTGAG+AGG - chr3.4:898813-898832 None:intergenic 30.0%
!!! TTGAGTTTTTTCACAAGCAT+AGG - chr3.4:901042-901061 None:intergenic 30.0%
AAAGAAAAGGCGAAAAGCTT+GGG + chr3.4:900896-900915 MS.gene50830:CDS 35.0%
AACAACAACTATTGCTGATC+TGG + chr3.4:899226-899245 MS.gene50830:intron 35.0%
AACTATAATCACCTTCTAGC+GGG + chr3.4:900051-900070 MS.gene50830:intron 35.0%
AACTATGTTTACCAGATGTG+CGG + chr3.4:900838-900857 MS.gene50830:intron 35.0%
AAGGCAAATCTACTTGAAGA+GGG + chr3.4:898502-898521 MS.gene50830:CDS 35.0%
ACAGGAAATATACTCTCATC+TGG - chr3.4:899333-899352 None:intergenic 35.0%
ACCTGATATATAGGCACATA+CGG - chr3.4:900872-900891 None:intergenic 35.0%
ACCTTGAACAACAGAATCAA+AGG - chr3.4:898530-898549 None:intergenic 35.0%
AGTTGAACCTTTGACTATCT+TGG + chr3.4:902219-902238 MS.gene50830:CDS 35.0%
ATAGTCAAAGGTTCAACTGT+AGG - chr3.4:902217-902236 None:intergenic 35.0%
ATCAACAAGAGTTGTCTATG+TGG - chr3.4:902085-902104 None:intergenic 35.0%
ATGATCACAATGAAAAACGC+GGG + chr3.4:902013-902032 MS.gene50830:intron 35.0%
ATGGAACAGTGAATGAGTTA+AGG + chr3.4:901147-901166 MS.gene50830:intron 35.0%
ATGTGTGTTCCTCTCAAAAA+CGG + chr3.4:898801-898820 MS.gene50830:intron 35.0%
CACATCTATGTGGATGAATT+GGG + chr3.4:900276-900295 MS.gene50830:intron 35.0%
CATATTGCTAGATGCAGAAA+AGG - chr3.4:899133-899152 None:intergenic 35.0%
GAAGACACAAAAATAGAGGA+AGG - chr3.4:900541-900560 None:intergenic 35.0%
GACAGAATGATGAATCATGT+AGG - chr3.4:900733-900752 None:intergenic 35.0%
GAGCTTCTATTATCTACAGA+AGG - chr3.4:899468-899487 None:intergenic 35.0%
GTATGTGGTTTCAAAGACAT+TGG + chr3.4:898887-898906 MS.gene50830:CDS 35.0%
TCAACAAGAGTTGTCTATGT+GGG - chr3.4:902084-902103 None:intergenic 35.0%
TCACCAATGTTGTAAGTGAT+TGG - chr3.4:902039-902058 None:intergenic 35.0%
TCCTTGACATCATGATAGAA+GGG - chr3.4:898580-898599 None:intergenic 35.0%
TGAACATTATGACTCAACCT+TGG - chr3.4:901267-901286 None:intergenic 35.0%
TTTAACACATATTCAGCCTC+TGG + chr3.4:900409-900428 MS.gene50830:intron 35.0%
! CTTTTCTGCATCTAGCAATA+TGG + chr3.4:899131-899150 MS.gene50830:intron 35.0%
!! TACAAGATTCTGGAGCAATT+TGG + chr3.4:902132-902151 MS.gene50830:intron 35.0%
!! TCCAAATTCTAGTTTGGGAT+GGG + chr3.4:899520-899539 MS.gene50830:CDS 35.0%
!! TTCCAAATTCTAGTTTGGGA+TGG + chr3.4:899519-899538 MS.gene50830:CDS 35.0%
AAACCATGTGTTACGTACTG+GGG - chr3.4:900436-900455 None:intergenic 40.0%
AAGACAAGACGTTTGAGTGA+TGG - chr3.4:898673-898692 None:intergenic 40.0%
ACAAACACCAACACCAAAAC+AGG - chr3.4:898356-898375 None:intergenic 40.0%
ACAAATACTTGGATCGCGAA+CGG - chr3.4:898113-898132 None:intergenic 40.0%
ACCCATCCCAAACTAGAATT+TGG - chr3.4:899524-899543 None:intergenic 40.0%
AGACAAGACGTTTGAGTGAT+GGG - chr3.4:898672-898691 None:intergenic 40.0%
AGCCACGATTAAGAAGCAAT+CGG - chr3.4:898075-898094 None:intergenic 40.0%
AGGGAAAAAGAAAGTGGAAC+AGG + chr3.4:901325-901344 MS.gene50830:intron 40.0%
AGTTTCTCTATTCAACCTCG+AGG - chr3.4:901457-901476 None:intergenic 40.0%
ATATATATGCTCCCGCTAGA+AGG - chr3.4:900065-900084 None:intergenic 40.0%
ATCACAAGCGAAGCATATCT+TGG - chr3.4:901300-901319 None:intergenic 40.0%
ATCTATGTGGATGAATTGGG+AGG + chr3.4:900279-900298 MS.gene50830:intron 40.0%
ATGTTGTTGTCGATGAGACT+TGG + chr3.4:898743-898762 MS.gene50830:CDS 40.0%
ATTAACCCAGCAATGGTCAT+AGG + chr3.4:898963-898982 MS.gene50830:CDS 40.0%
ATTCTCGTACGCCAGAATAT+GGG - chr3.4:899570-899589 None:intergenic 40.0%
ATTGCTGCTGTTGCGTATAA+TGG + chr3.4:898703-898722 MS.gene50830:CDS 40.0%
ATTGTTTCAGCTGTGGTATG+TGG + chr3.4:898872-898891 MS.gene50830:intron 40.0%
CAAAGAAAAGGCGAAAAGCT+TGG + chr3.4:900895-900914 MS.gene50830:CDS 40.0%
CAAGGCAAATCTACTTGAAG+AGG + chr3.4:898501-898520 MS.gene50830:CDS 40.0%
CCACAGCTGAAACAATCAAT+AGG - chr3.4:898868-898887 None:intergenic 40.0%
CCATGTCCATCAACTAAACA+TGG - chr3.4:901010-901029 None:intergenic 40.0%
CTCTTTCACTTCATTGATGC+AGG + chr3.4:899485-899504 MS.gene50830:intron 40.0%
GAAACCATGTGTTACGTACT+GGG - chr3.4:900437-900456 None:intergenic 40.0%
GATCAATCAATTCAGCCTGA+GGG - chr3.4:898603-898622 None:intergenic 40.0%
GCACATCTATGTGGATGAAT+TGG + chr3.4:900275-900294 MS.gene50830:intron 40.0%
GCCTTTGATTCTGTTGTTCA+AGG + chr3.4:898526-898545 MS.gene50830:CDS 40.0%
GCTTCGCTTGTGATATGAAA+GGG + chr3.4:901306-901325 MS.gene50830:intron 40.0%
GGAAATGTTGTATGTGTGAC+TGG + chr3.4:898019-898038 MS.gene50830:CDS 40.0%
GGACTTGGCACATTTATACT+TGG - chr3.4:900654-900673 None:intergenic 40.0%
GGTTACTATTAACCCAGCAA+TGG + chr3.4:898956-898975 MS.gene50830:CDS 40.0%
GTATCTAACCTAATACCTCG+AGG + chr3.4:901439-901458 MS.gene50830:intron 40.0%
GTCCTTGACATCATGATAGA+AGG - chr3.4:898581-898600 None:intergenic 40.0%
GTGTCTCCATGTTTAGTTGA+TGG + chr3.4:901001-901020 MS.gene50830:intron 40.0%
TCAATTCGTCCACAAACACT+TGG - chr3.4:900216-900235 None:intergenic 40.0%
TCCCTTCTATCATGATGTCA+AGG + chr3.4:898576-898595 MS.gene50830:CDS 40.0%
TCTGTTGTTCAAGGTTGTCA+TGG + chr3.4:898535-898554 MS.gene50830:CDS 40.0%
TGAAACCATGTGTTACGTAC+TGG - chr3.4:900438-900457 None:intergenic 40.0%
TGATTGATCCTGCTCTCAAA+GGG + chr3.4:898614-898633 MS.gene50830:CDS 40.0%
TGCATTCACCAAACCTCTAT+GGG - chr3.4:900128-900147 None:intergenic 40.0%
TGCTTCGCTTGTGATATGAA+AGG + chr3.4:901305-901324 MS.gene50830:intron 40.0%
TGTTGCAAATGCCCATATTC+TGG + chr3.4:899556-899575 MS.gene50830:CDS 40.0%
TTAACCCAGCAATGGTCATA+GGG + chr3.4:898964-898983 MS.gene50830:CDS 40.0%
TTCGTCTCCAAGATAGTCAA+AGG - chr3.4:902229-902248 None:intergenic 40.0%
TTGATTGATCCTGCTCTCAA+AGG + chr3.4:898613-898632 MS.gene50830:CDS 40.0%
TTGCATTCACCAAACCTCTA+TGG - chr3.4:900129-900148 None:intergenic 40.0%
! AAGGTTCAACTGTAGGTTGA+TGG - chr3.4:902210-902229 None:intergenic 40.0%
! CAAGCTTTTCGCCTTTTCTT+TGG - chr3.4:900897-900916 None:intergenic 40.0%
! CCTATTGATTGTTTCAGCTG+TGG + chr3.4:898865-898884 MS.gene50830:intron 40.0%
! CGAGGTATTAGGTTAGATAC+TGG - chr3.4:901439-901458 None:intergenic 40.0%
! CTATTCAACCTCGAGGTATT+AGG - chr3.4:901450-901469 None:intergenic 40.0%
!! AACTGTAGGTTGATGGAAGA+TGG - chr3.4:902203-902222 None:intergenic 40.0%
!! CCATGTTTAGTTGATGGACA+TGG + chr3.4:901007-901026 MS.gene50830:intron 40.0%
!! GGTTTGGTTTGTACTCTTGA+TGG + chr3.4:901128-901147 MS.gene50830:intron 40.0%
!!! TATGTGTCCTGTTTTGGTGT+TGG + chr3.4:898346-898365 MS.gene50830:intron 40.0%
AACCAAGTGGTCAACCTTCT+TGG - chr3.4:898446-898465 None:intergenic 45.0%
ACAACAACATCAGGAGTTCG+AGG - chr3.4:898733-898752 None:intergenic 45.0%
ACCAAGTGGTCAACCTTCTT+GGG - chr3.4:898445-898464 None:intergenic 45.0%
ACCTTCTTGGGATCATCTAC+AGG - chr3.4:898433-898452 None:intergenic 45.0%
AGAAACTCCAGTGTCTCTCT+TGG + chr3.4:901470-901489 MS.gene50830:intron 45.0%
AGCGAAGCATATCTTGGAGA+AGG - chr3.4:901294-901313 None:intergenic 45.0%
ATAATTTCAGTCCGGGTGTC+TGG - chr3.4:898267-898286 None:intergenic 45.0%
CACACTACTCAGAAGTTGTG+AGG + chr3.4:899630-899649 MS.gene50830:CDS 45.0%
CACCTTCAAGCTTAACCAAG+TGG - chr3.4:898459-898478 None:intergenic 45.0%
CAGTGTCTCTCTTGGAAGAT+GGG + chr3.4:901478-901497 MS.gene50830:intron 45.0%
CATTCTCGTACGCCAGAATA+TGG - chr3.4:899571-899590 None:intergenic 45.0%
CGTAACACATGGTTTCACTG+AGG + chr3.4:900441-900460 MS.gene50830:intron 45.0%
GACAAGACGTTTGAGTGATG+GGG - chr3.4:898671-898690 None:intergenic 45.0%
GACCACTTGGTTAAGCTTGA+AGG + chr3.4:898454-898473 MS.gene50830:CDS 45.0%
GCATTCACCAAACCTCTATG+GGG - chr3.4:900127-900146 None:intergenic 45.0%
GCCGTATGTGCCTATATATC+AGG + chr3.4:900868-900887 MS.gene50830:CDS 45.0%
GCGAAGCATATCTTGGAGAA+GGG - chr3.4:901293-901312 None:intergenic 45.0%
GGAGAGATTGCAACTGTTCA+AGG + chr3.4:898483-898502 MS.gene50830:CDS 45.0%
GGATCAATCAATTCAGCCTG+AGG - chr3.4:898604-898623 None:intergenic 45.0%
GGGACTTGAGTATACTCCTT+TGG + chr3.4:900916-900935 MS.gene50830:CDS 45.0%
GGGCCAATCACTTACAACAT+TGG + chr3.4:902033-902052 MS.gene50830:intron 45.0%
GTATGGGTACCAAGTGTTTG+TGG + chr3.4:900204-900223 MS.gene50830:intron 45.0%
GTCCGATTGCTTCTTAATCG+TGG + chr3.4:898070-898089 MS.gene50830:CDS 45.0%
GTCTCATCGACAACAACATC+AGG - chr3.4:898742-898761 None:intergenic 45.0%
GTTTATATAACGGTGCCTCG+AGG - chr3.4:901792-901811 None:intergenic 45.0%
TACCATACGAAGCACAGACA+CGG - chr3.4:898381-898400 None:intergenic 45.0%
TACGAGAATGCTTCAGCTAG+TGG + chr3.4:899581-899600 MS.gene50830:CDS 45.0%
TCAATCTGACATCCCCATAG+AGG + chr3.4:900112-900131 MS.gene50830:intron 45.0%
TCCTTGATGCTCACTTCCAA+AGG - chr3.4:900935-900954 None:intergenic 45.0%
TCGAAAGGTGATCAAGTCTG+AGG - chr3.4:900332-900351 None:intergenic 45.0%
TGGTCATGTGGCATTCAAAC+TGG + chr3.4:902152-902171 MS.gene50830:CDS 45.0%
TGTGACTGAGCACATCTATG+TGG + chr3.4:900266-900285 MS.gene50830:intron 45.0%
TTGCAGCAGCACTTGTGTTT+AGG - chr3.4:899007-899026 None:intergenic 45.0%
! CTTCAGGTTACATCGCTTCA+TGG + chr3.4:898044-898063 MS.gene50830:CDS 45.0%
! TCCTTTGGAAGTGAGCATCA+AGG + chr3.4:900931-900950 MS.gene50830:CDS 45.0%
! TCTGGAGCAATTTGGTCATG+TGG + chr3.4:902140-902159 MS.gene50830:CDS 45.0%
!! AGATGGTGGATACGAGATGA+TGG - chr3.4:902186-902205 None:intergenic 45.0%
!! ATGGTGGATACGAGATGATG+GGG - chr3.4:902184-902203 None:intergenic 45.0%
!! GAGCATGGTTCTGGTACAAT+GGG + chr3.4:902276-902295 MS.gene50830:CDS 45.0%
!! GATGGTGGATACGAGATGAT+GGG - chr3.4:902185-902204 None:intergenic 45.0%
!! GGTTAAGCTTGAAGGTGCTA+AGG + chr3.4:898462-898481 MS.gene50830:CDS 45.0%
!! TGAGCATGGTTCTGGTACAA+TGG + chr3.4:902275-902294 MS.gene50830:CDS 45.0%
!! TGTAGGTTGATGGAAGATGG+TGG - chr3.4:902200-902219 None:intergenic 45.0%
!! TTTAGGACTGGTTGCAAGAG+AGG - chr3.4:898990-899009 None:intergenic 45.0%
!! AAAAAACAAAAAAAAAAAAA+AGG + chr3.4:901388-901407 MS.gene50830:intron 5.0%
!! AAATAATAATTATTATTGAT+TGG - chr3.4:898194-898213 None:intergenic 5.0%
!! TTATATATATATATATATCA+TGG + chr3.4:898293-898312 MS.gene50830:intron 5.0%
AATACTTGGATCGCGAACGG+TGG - chr3.4:898110-898129 None:intergenic 50.0%
ACCAGAACCATGCTCACAGT+GGG - chr3.4:902271-902290 None:intergenic 50.0%
AGTTAACCCCACTGTGAGCA+TGG + chr3.4:902261-902280 MS.gene50830:CDS 50.0%
ATGACTCAACCTTGGTCACG+CGG - chr3.4:901259-901278 None:intergenic 50.0%
CCAGTGTCTCTCTTGGAAGA+TGG + chr3.4:901477-901496 MS.gene50830:intron 50.0%
CCATCTTCCAAGAGAGACAC+TGG - chr3.4:901480-901499 None:intergenic 50.0%
CTGACATCCCCATAGAGGTT+TGG + chr3.4:900117-900136 MS.gene50830:intron 50.0%
GCCTGTAGATGATCCCAAGA+AGG + chr3.4:898429-898448 MS.gene50830:intron 50.0%
GGTGATCAAGTCTGAGGAAC+AGG - chr3.4:900326-900345 None:intergenic 50.0%
TACCAGAACCATGCTCACAG+TGG - chr3.4:902272-902291 None:intergenic 50.0%
TCATGATGTCAAGGACCCTC+AGG + chr3.4:898585-898604 MS.gene50830:CDS 50.0%
TCCCAAGAAGGTTGACCACT+TGG + chr3.4:898441-898460 MS.gene50830:CDS 50.0%
TGAATGAGACACCAGACACC+CGG + chr3.4:898253-898272 MS.gene50830:intron 50.0%
! CATTGGCTGAAGAAGCTGCA+TGG + chr3.4:898904-898923 MS.gene50830:CDS 50.0%
! GCAGCACTTGTGTTTAGGAC+TGG - chr3.4:899002-899021 None:intergenic 50.0%
! TCTCTGGGAGTTGCAACGAA+GGG - chr3.4:899673-899692 None:intergenic 50.0%
! TGGTGGATACGAGATGATGG+GGG - chr3.4:902183-902202 None:intergenic 50.0%
! TTCTCTGGGAGTTGCAACGA+AGG - chr3.4:899674-899693 None:intergenic 50.0%
! TTGAGAGTCCCTTTGAGAGC+AGG - chr3.4:898625-898644 None:intergenic 50.0%
ACCAGGTTGTTGTGTCCTCG+AGG + chr3.4:901774-901793 MS.gene50830:intron 55.0%
AGAGGCCCTATGACCATTGC+TGG - chr3.4:898972-898991 None:intergenic 55.0%
CCAGAACCATGCTCACAGTG+GGG - chr3.4:902270-902289 None:intergenic 55.0%
CGGCTTATCATCCGCACATC+TGG - chr3.4:900852-900871 None:intergenic 55.0%
GAGGCCCTATGACCATTGCT+GGG - chr3.4:898971-898990 None:intergenic 55.0%
GGACCCCAGTACGTAACACA+TGG + chr3.4:900430-900449 MS.gene50830:intron 55.0%
GTATGTGTGACTGGCGCTTC+AGG + chr3.4:898028-898047 MS.gene50830:CDS 55.0%
GTCCGTGTCTGTGCTTCGTA+TGG + chr3.4:898376-898395 MS.gene50830:intron 55.0%
TGTTACGTACTGGGGTCCAG+AGG - chr3.4:900428-900447 None:intergenic 55.0%
! TCTCTAGCGAGAGCACAACG+AGG + chr3.4:901228-901247 MS.gene50830:intron 55.0%
CCCCACTGTGAGCATGGTTC+TGG + chr3.4:902267-902286 MS.gene50830:CDS 60.0%
GAGGAAACACCGCGTGACCA+AGG + chr3.4:901247-901266 MS.gene50830:intron 60.0%
GCCTCGAGGACACAACAACC+TGG - chr3.4:901778-901797 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr3.4 gene 898004 902318 898004 ID=MS.gene50830
chr3.4 mRNA 898004 902318 898004 ID=MS.gene50830.t1;Parent=MS.gene50830
chr3.4 exon 898004 898124 898004 ID=MS.gene50830.t1.exon1;Parent=MS.gene50830.t1
chr3.4 CDS 898004 898124 898004 ID=cds.MS.gene50830.t1;Parent=MS.gene50830.t1
chr3.4 exon 898437 898798 898437 ID=MS.gene50830.t1.exon2;Parent=MS.gene50830.t1
chr3.4 CDS 898437 898798 898437 ID=cds.MS.gene50830.t1;Parent=MS.gene50830.t1
chr3.4 exon 898882 899044 898882 ID=MS.gene50830.t1.exon3;Parent=MS.gene50830.t1
chr3.4 CDS 898882 899044 898882 ID=cds.MS.gene50830.t1;Parent=MS.gene50830.t1
chr3.4 exon 899507 899693 899507 ID=MS.gene50830.t1.exon4;Parent=MS.gene50830.t1
chr3.4 CDS 899507 899693 899507 ID=cds.MS.gene50830.t1;Parent=MS.gene50830.t1
chr3.4 exon 900853 900981 900853 ID=MS.gene50830.t1.exon5;Parent=MS.gene50830.t1
chr3.4 CDS 900853 900981 900853 ID=cds.MS.gene50830.t1;Parent=MS.gene50830.t1
chr3.4 exon 902138 902318 902138 ID=MS.gene50830.t1.exon6;Parent=MS.gene50830.t1
chr3.4 CDS 902138 902318 902138 ID=cds.MS.gene50830.t1;Parent=MS.gene50830.t1
Gene Sequence

>MS.gene50830

ATGAGCAGCAACTTGGGAAATGTTGTATGTGTGACTGGCGCTTCAGGTTACATCGCTTCATGGCTCGTCCGATTGCTTCTTAATCGTGGCTACACTGTTAAAGCCACCGTTCGCGATCCAAGTATTTGTCTTTTTCTTTCATTTCACTTCTCTTCTGATCTATCAATCACTCACTCACACATCAACACCAATCAATAATAATTATTATTTCAGAAAATTGTATAATTCAATGTTTTGTTTTCACATGTATGAATGAGACACCAGACACCCGGACTGAAATTATATTGAATTATATATATATATATATCATGGATTGAAATTATTATTGGTGGTGGTAATATGTATGTGTCCTGTTTTGGTGTTGGTGTTTGTGTCCGTGTCTGTGCTTCGTATGGTATATGTTTGATTTGATTATAATTGTGTCTGCCTGTAGATGATCCCAAGAAGGTTGACCACTTGGTTAAGCTTGAAGGTGCTAAGGAGAGATTGCAACTGTTCAAGGCAAATCTACTTGAAGAGGGTGCCTTTGATTCTGTTGTTCAAGGTTGTCATGGTGTCTTTCACACTGCATCTCCCTTCTATCATGATGTCAAGGACCCTCAGGCTGAATTGATTGATCCTGCTCTCAAAGGGACTCTCAATGTTCTCAACTCATGTGCTAAATCCCCATCACTCAAACGTCTTGTCTTAACATCTTCTATTGCTGCTGTTGCGTATAATGGAAAACCTCGAACTCCTGATGTTGTTGTCGATGAGACTTGGTTTACTGATGCTGATTTATGTGCTAAATCAAACGTATGTGTGTTCCTCTCAAAAACGGTTTTGAATTATGCTATCATGATCTTTGACTTCTTTCTATTTCCTATTGATTGTTTCAGCTGTGGTATGTGGTTTCAAAGACATTGGCTGAAGAAGCTGCATGGAAATTTGTTAAAGAAAACAACATTGATATGGTTACTATTAACCCAGCAATGGTCATAGGGCCTCTCTTGCAACCAGTCCTAAACACAAGTGCTGCTGCAATTCTAAACCTGATTAATGGTAATTAATTACAATTCTAAACGCAGCAAATACTCTTATTATCTTTCTGTGTCTACATCTTGCATATTATTTTTCTTGTCAGCTACCTTTTCTGCATCTAGCAATATGGAAAGATATAAAAAAAATTGAAAGCTACTAAAAGTAGGGTTAGATAAGTACAAGATATGTACATTTTAATCGTAACAACAACTATTGCTGATCTGGATGATATGAGTGTCTATTTCCTTTAATTTCTGGCTTGTTGTTGATAGTTGTTTAATTGTAATCGTAACAGTTATTGTTGAGCCAGATGAGAGTATATTTCCTGTTATTTCTAGCTTCATTGTTGCTTGTTGTGTTTTCTTTTGTTGTTATTTTAATGAATATTAGCAGTTCTTATGTACTTCAAATATGTTTGTGTTCAAGAGGACAAGATTTTGTCCTTCTGTAGATAATAGAAGCTCTTTCACTTCATTGATGCAGGTGCACAGACATTTCCAAATTCTAGTTTGGGATGGGTCAATGTGAAAGATGTTGCAAATGCCCATATTCTGGCGTACGAGAATGCTTCAGCTAGTGGAAGACATTGTTTAGTTGAGAGAGTAGCACACTACTCAGAAGTTGTGAGGATTTTACGTGAACTGTACCCTTCGTTGCAACTCCCAGAGAAGTAAGATTAATAATTTCGATAACTGAAAGATTGCATATAATTTATGTTCTTATATGAATGCTAATTCTCATCTGATGTGCCACATTCTTTAAAGCTTTATTTACTTGTTTGAAACTCAATTTAATGCTAAAATGAAAGGATTTAGTCATTGCTAATAGTTGATTCAGGGTTGTTTCTTTAATGTATACGGAAAAAGGTAACTAAGTGAAAAATGCAGAAAAATTTCAACAATTGAATGTTTTAGAATAAATGCCTTGCTTTACATAACAAGATTGTAAAGGTTTATATACAATAGAATCTCTCAAAATAAGGGAAAGTACATTAATGGTAATAAACAAAGAGATGAATTCTAATTGTAACTATAATCACCTTCTAGCGGGAGCATATATATTCTATGCATCCAACTTGGTCTGTATAATCAATCTGACATCCCCATAGAGGTTTGGTGAATGCAACTTCATATTTGTCCCCTAGTTGATATGTTCTCTATCAGACTATCATATAGTTAAAGTATGGGTACCAAGTGTTTGTGGACGAATTGATTCATTTGAGTTGTTTTCTATGTGCTTGCTTGTGACTGAGCACATCTATGTGGATGAATTGGGAGGTTGCTTTATGTTATCTGATGACCTGTTCCTCAGACTTGATCACCTTTCGATTTATAGCTCATGTTAATTAGCTTTACTTCAGTATAACTACCATTATTTCTGTACTTTTTAACACATATTCAGCCTCTGGACCCCAGTACGTAACACATGGTTTCACTGAGGTTTTACTAATTTCTTTTTCAATAATATAACACCTTCTATCATATTGGGTAACTTGAATGTCATGATGACTTGCACCTTCCTCTATTTTTGTGTCTTCTGTACATTAATTGTTATGCAAAATTGCTAATTTGTACTGAATTTTTCATTTTGGGATTCATTGCTGAATTAAGTGTTTCTAAAAATACGGCCAAGTATAAATGTGCCAAGTCCTAGAAATGTTGTTTTATACTCGAAAATCATAGGTTAATGGTTACTATAAGATGAGCCCTACATGATTCATCATTCTGTCCGTTTCTGTATTTACATTTATATAATAATTTAAATATTTATAGTTTAATCTGTTTAGATTTTTCTAATATCGTTTTCACTTTGTCAACTATGTTTACCAGATGTGCGGATGATAAGCCGTATGTGCCTATATATCAGGTTTCCAAAGAAAAGGCGAAAAGCTTGGGACTTGAGTATACTCCTTTGGAAGTGAGCATCAAGGAGACTGTTGAAAGTTTGAAAGAAAAGAAGTTCGTCAACCTTTAATTTGTGTCTCCATGTTTAGTTGATGGACATGGCTTTTGATGCCTATGCTTGTGAAAAAACTCAAGTATGTGAAATAAGGTTTAAATTAAATCTAGATTGGTACTAGGTACTGAAATAAGTCATTCTTCATGGTTTGGTTTGTACTCTTGATGGAACAGTGAATGAGTTAAGGTAATCTGTGTTTTGGTTATTATTTTAGGGTTCCCCTTTTCAGAATTGCTAGAAAGAGCTCTCTAGCGAGAGCACAACGAGGAAACACCGCGTGACCAAGGTTGAGTCATAATGTTCAAAACCCTTCTCCAAGATATGCTTCGCTTGTGATATGAAAGGGAAAAAGAAAGTGGAACAGGCTTCCACTTTGTTTTAGTTCCTAATAACTTGGAAAAACTCAAAAAACAAAAAAAAAAAAAAGGATTTCTTGAAAACTATTCTCGATGTCCAGTATCTAACCTAATACCTCGAGGTTGAATAGAGAAACTCCAGTGTCTCTCTTGGAAGATGGGCTGTTCTCTCAAAAACTATTCATACCCTCTCCATCCCAAATTAATTAACTATTTGCAAAAAGAAAAAATGTCTCAAAATAACGAATATTTTCAATTGATGGAACATTAACTATTTATAGTTTACATTGTGGAATTGATGTCCCAAAATAACTTATCTTTTCAAACAAGGAAAATTTAAAGCAAAGGTTGATTGCTAAAGACTACAAACGAAAGTATGGAGTTGAATATGAAGCTTATTCAGGTCACAAATTTCTCTAAGACGAAATATATTTTACCAGGTTGTTGTGTCCTCGAGGCACCGTTATATAAACATTCTTTTACTCTCAAATTATAAGTCGTTTTGGAGAAAAAATATGTCATAAATTATAAGTCGCTTTACAATACCAATTAAGTGATATTTTTCTTACTACACCATCAACTATTTATTACCCTTTTTTTTTTCTCCCTTTTGTAAATGATTTATAATTTCTTTTTCCCATACAATATTAACTACACTTGTTAATTTGTGTGAAATGATCACAATGAAAAACGCGGGCCAATCACTTACAACATTGGTGATTTTGTCAAGATAAAGTGTTTGCCCACATAGACAACTCTTGTTGATAAGCTTTCTAAACAATTTTATGGTCTTTACAAGATTCTGGAGCAATTTGGTCATGTGGCATTCAAACTGGAATTTCCCCCATCATCTCGTATCCACCATCTTCCATCAACCTACAGTTGAACCTTTGACTATCTTGGAGACGAAGTTAGAGCATTCAGTTAACCCCACTGTGAGCATGGTTCTGGTACAATGGGCAGACATCCCACCTGACTGA
Protein sequence

>MS.gene50830.t1

MSSNLGNVVCVTGASGYIASWLVRLLLNRGYTVKATVRDPNDPKKVDHLVKLEGAKERLQLFKANLLEEGAFDSVVQGCHGVFHTASPFYHDVKDPQAELIDPALKGTLNVLNSCAKSPSLKRLVLTSSIAAVAYNGKPRTPDVVVDETWFTDADLCAKSNLWYVVSKTLAEEAAWKFVKENNIDMVTINPAMVIGPLLQPVLNTSAAAILNLINGAQTFPNSSLGWVNVKDVANAHILAYENASASGRHCLVERVAHYSEVVRILRELYPSLQLPEKCADDKPYVPIYQVSKEKAKSLGLEYTPLEVSIKETVESLKEKKFWSNLVMWHSNWNFPHHLVSTIFHQPTVEPLTILETKLEHSVNPTVSMVLVQWADIPPD