Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50852.t1 | XP_003598007.1 | 93.8 | 322 | 4 | 1 | 1 | 306 | 1 | 322 | 5.80E-165 | 590.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50852.t1 | Q9S9N9 | 47.1 | 310 | 147 | 6 | 6 | 301 | 13 | 319 | 2.9e-72 | 273.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50852.t1 | G7IYC6 | 93.8 | 322 | 4 | 1 | 1 | 306 | 1 | 322 | 4.2e-165 | 590.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055370 | MS.gene50852 | 0.802884 | 4.54E-49 | -1.69E-46 |
| MS.gene058752 | MS.gene50852 | 0.927875 | 6.38E-92 | -1.69E-46 |
| MS.gene05960 | MS.gene50852 | -0.822854 | 1.90E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene50852 | MS.gene26989 | PPI |
| MS.gene24249 | MS.gene50852 | PPI |
| MS.gene50852 | MS.gene069864 | PPI |
| MS.gene50852 | MS.gene65685 | PPI |
| MS.gene50852 | MS.gene24248 | PPI |
| MS.gene50852 | MS.gene02017 | PPI |
| MS.gene50852 | MS.gene36346 | PPI |
| MS.gene50852 | MS.gene053809 | PPI |
| MS.gene50852 | MS.gene63037 | PPI |
| MS.gene50852 | MS.gene90701 | PPI |
| MS.gene96654 | MS.gene50852 | PPI |
| MS.gene50852 | MS.gene72939 | PPI |
| MS.gene76529 | MS.gene50852 | PPI |
| MS.gene50852 | MS.gene26988 | PPI |
| MS.gene50852 | MS.gene90702 | PPI |
| MS.gene50852 | MS.gene02799 | PPI |
| MS.gene003216 | MS.gene50852 | PPI |
| MS.gene50852 | MS.gene85144 | PPI |
| MS.gene50852 | MS.gene02801 | PPI |
| MS.gene50852 | MS.gene27251 | PPI |
| MS.gene50852 | MS.gene27250 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50852.t1 | MTR_3g005210 | 93.789 | 322 | 4 | 1 | 1 | 306 | 1 | 322 | 0.0 | 610 |
| MS.gene50852.t1 | MTR_3g005170 | 86.562 | 320 | 27 | 1 | 3 | 306 | 7 | 326 | 0.0 | 565 |
| MS.gene50852.t1 | MTR_3g005170 | 86.469 | 303 | 26 | 1 | 4 | 306 | 8 | 295 | 0.0 | 530 |
| MS.gene50852.t1 | MTR_3g005170 | 86.081 | 273 | 22 | 1 | 3 | 259 | 7 | 279 | 1.71e-172 | 479 |
| MS.gene50852.t1 | MTR_8g062440 | 67.925 | 318 | 85 | 2 | 5 | 306 | 7 | 323 | 1.07e-160 | 451 |
| MS.gene50852.t1 | MTR_8g062440 | 67.712 | 319 | 85 | 3 | 5 | 306 | 7 | 324 | 1.22e-158 | 446 |
| MS.gene50852.t1 | MTR_8g062110 | 66.352 | 318 | 90 | 2 | 5 | 306 | 8 | 324 | 2.96e-156 | 439 |
| MS.gene50852.t1 | MTR_8g062110 | 66.352 | 318 | 90 | 2 | 5 | 306 | 17 | 333 | 3.73e-156 | 439 |
| MS.gene50852.t1 | MTR_4g077100 | 63.522 | 318 | 100 | 1 | 5 | 306 | 10 | 327 | 1.08e-154 | 436 |
| MS.gene50852.t1 | MTR_4g077130 | 62.462 | 325 | 103 | 2 | 1 | 306 | 1 | 325 | 2.54e-152 | 429 |
| MS.gene50852.t1 | MTR_8g062440 | 66.790 | 271 | 73 | 2 | 5 | 259 | 7 | 276 | 4.71e-129 | 370 |
| MS.gene50852.t1 | MTR_4g077100 | 62.731 | 271 | 85 | 1 | 5 | 259 | 10 | 280 | 3.05e-127 | 364 |
| MS.gene50852.t1 | MTR_8g062110 | 64.576 | 271 | 79 | 2 | 5 | 259 | 8 | 277 | 7.10e-127 | 363 |
| MS.gene50852.t1 | MTR_8g062110 | 64.576 | 271 | 79 | 2 | 5 | 259 | 8 | 277 | 7.26e-127 | 363 |
| MS.gene50852.t1 | MTR_8g062110 | 69.737 | 228 | 68 | 1 | 79 | 306 | 12 | 238 | 1.52e-115 | 333 |
| MS.gene50852.t1 | MTR_4g006940 | 47.742 | 310 | 145 | 6 | 6 | 301 | 17 | 323 | 4.70e-89 | 269 |
| MS.gene50852.t1 | MTR_5g072620 | 44.410 | 322 | 157 | 5 | 3 | 305 | 2 | 320 | 6.22e-87 | 263 |
| MS.gene50852.t1 | MTR_8g062110 | 67.956 | 181 | 57 | 1 | 79 | 259 | 12 | 191 | 4.75e-86 | 256 |
| MS.gene50852.t1 | MTR_2g104960 | 44.688 | 320 | 160 | 6 | 1 | 306 | 15 | 331 | 1.53e-84 | 258 |
| MS.gene50852.t1 | MTR_3g031650 | 40.810 | 321 | 168 | 5 | 3 | 304 | 2 | 319 | 2.59e-79 | 244 |
| MS.gene50852.t1 | MTR_5g056600 | 38.801 | 317 | 173 | 5 | 7 | 304 | 5 | 319 | 4.80e-79 | 243 |
| MS.gene50852.t1 | MTR_2g101330 | 41.139 | 316 | 162 | 6 | 6 | 301 | 5 | 316 | 5.40e-79 | 243 |
| MS.gene50852.t1 | MTR_0685s0030 | 64.024 | 164 | 59 | 0 | 143 | 306 | 1 | 164 | 1.53e-76 | 231 |
| MS.gene50852.t1 | MTR_1g022440 | 39.252 | 321 | 170 | 6 | 3 | 301 | 5 | 322 | 2.71e-76 | 237 |
| MS.gene50852.t1 | MTR_4g006940 | 47.566 | 267 | 124 | 5 | 6 | 259 | 17 | 280 | 6.18e-74 | 229 |
| MS.gene50852.t1 | MTR_4g006940 | 47.566 | 267 | 124 | 5 | 6 | 259 | 17 | 280 | 6.18e-74 | 229 |
| MS.gene50852.t1 | MTR_1g022445 | 37.879 | 330 | 172 | 8 | 3 | 304 | 5 | 329 | 7.54e-71 | 223 |
| MS.gene50852.t1 | MTR_3g031650 | 42.751 | 269 | 132 | 5 | 3 | 252 | 2 | 267 | 1.02e-70 | 220 |
| MS.gene50852.t1 | MTR_4g009040 | 40.252 | 318 | 164 | 7 | 2 | 300 | 9 | 319 | 2.04e-70 | 221 |
| MS.gene50852.t1 | MTR_4g009040 | 39.752 | 322 | 164 | 7 | 2 | 300 | 9 | 323 | 1.15e-69 | 219 |
| MS.gene50852.t1 | MTR_4g009690 | 40.379 | 317 | 164 | 6 | 2 | 300 | 9 | 318 | 9.29e-63 | 201 |
| MS.gene50852.t1 | MTR_2g028620 | 37.538 | 325 | 173 | 9 | 5 | 305 | 9 | 327 | 1.79e-61 | 198 |
| MS.gene50852.t1 | MTR_4g009690 | 40.252 | 318 | 164 | 7 | 2 | 300 | 9 | 319 | 6.29e-61 | 197 |
| MS.gene50852.t1 | MTR_4g092080 | 36.728 | 324 | 173 | 8 | 7 | 301 | 15 | 335 | 2.44e-57 | 188 |
| MS.gene50852.t1 | MTR_3g011130 | 77.586 | 116 | 25 | 1 | 81 | 195 | 30 | 145 | 4.22e-55 | 176 |
| MS.gene50852.t1 | MTR_7g074880 | 34.557 | 327 | 178 | 9 | 6 | 304 | 8 | 326 | 1.09e-54 | 181 |
| MS.gene50852.t1 | MTR_7g074820 | 35.276 | 326 | 180 | 8 | 6 | 304 | 8 | 329 | 4.04e-54 | 179 |
| MS.gene50852.t1 | MTR_4g081440 | 37.309 | 327 | 161 | 11 | 7 | 295 | 25 | 345 | 4.67e-54 | 180 |
| MS.gene50852.t1 | MTR_2g028620 | 40.590 | 271 | 131 | 9 | 5 | 251 | 9 | 273 | 5.77e-54 | 179 |
| MS.gene50852.t1 | MTR_4g081440 | 37.003 | 327 | 161 | 11 | 7 | 295 | 21 | 340 | 9.77e-54 | 179 |
| MS.gene50852.t1 | MTR_7g074730 | 34.769 | 325 | 182 | 8 | 6 | 304 | 8 | 328 | 1.10e-52 | 176 |
| MS.gene50852.t1 | MTR_7g074850 | 34.251 | 327 | 182 | 9 | 6 | 304 | 8 | 329 | 7.39e-52 | 173 |
| MS.gene50852.t1 | MTR_0685s0030 | 62.393 | 117 | 44 | 0 | 143 | 259 | 1 | 117 | 3.72e-49 | 159 |
| MS.gene50852.t1 | MTR_7g074710 | 35.294 | 272 | 152 | 6 | 6 | 256 | 8 | 276 | 2.71e-45 | 156 |
| MS.gene50852.t1 | MTR_4g077150 | 40.183 | 219 | 76 | 6 | 62 | 278 | 2 | 167 | 6.38e-43 | 145 |
| MS.gene50852.t1 | MTR_4g023730 | 33.571 | 280 | 156 | 7 | 2 | 256 | 4 | 278 | 6.29e-39 | 140 |
| MS.gene50852.t1 | MTR_7g074870 | 31.250 | 288 | 169 | 9 | 41 | 304 | 6 | 288 | 1.81e-34 | 127 |
| MS.gene50852.t1 | MTR_5g029990 | 27.869 | 305 | 184 | 8 | 1 | 284 | 7 | 296 | 1.18e-33 | 125 |
| MS.gene50852.t1 | MTR_0164s0070 | 48.413 | 126 | 48 | 1 | 6 | 114 | 5 | 130 | 2.04e-33 | 122 |
| MS.gene50852.t1 | MTR_1g099230 | 86.567 | 67 | 9 | 0 | 76 | 142 | 31 | 97 | 4.74e-32 | 117 |
| MS.gene50852.t1 | MTR_6g406250 | 29.260 | 311 | 186 | 10 | 5 | 290 | 54 | 355 | 9.12e-32 | 121 |
| MS.gene50852.t1 | MTR_6g406250 | 32.821 | 195 | 107 | 5 | 5 | 178 | 54 | 245 | 3.79e-27 | 107 |
| MS.gene50852.t1 | MTR_2g013250 | 29.758 | 289 | 168 | 6 | 6 | 259 | 7 | 295 | 1.17e-26 | 107 |
| MS.gene50852.t1 | MTR_2g013230 | 29.758 | 289 | 168 | 7 | 6 | 259 | 8 | 296 | 3.90e-25 | 103 |
| MS.gene50852.t1 | MTR_7g117190 | 30.640 | 297 | 162 | 11 | 6 | 262 | 7 | 299 | 1.27e-23 | 99.4 |
| MS.gene50852.t1 | MTR_2g013260 | 30.034 | 293 | 162 | 7 | 6 | 259 | 8 | 296 | 1.78e-23 | 97.8 |
| MS.gene50852.t1 | MTR_2g013260 | 30.034 | 293 | 162 | 7 | 6 | 259 | 8 | 296 | 6.01e-23 | 97.4 |
| MS.gene50852.t1 | MTR_7g117190 | 30.201 | 298 | 164 | 11 | 6 | 263 | 7 | 300 | 6.49e-23 | 96.7 |
| MS.gene50852.t1 | MTR_8g062490 | 58.000 | 50 | 21 | 0 | 211 | 260 | 68 | 117 | 3.34e-12 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50852.t1 | AT5G19440 | 71.069 | 318 | 76 | 1 | 5 | 306 | 9 | 326 | 9.70e-168 | 469 |
| MS.gene50852.t1 | AT1G51410 | 68.770 | 317 | 83 | 1 | 6 | 306 | 9 | 325 | 1.98e-165 | 462 |
| MS.gene50852.t1 | AT1G09510 | 50.784 | 319 | 141 | 1 | 2 | 304 | 4 | 322 | 3.10e-110 | 323 |
| MS.gene50852.t1 | AT1G66800 | 51.438 | 313 | 132 | 2 | 5 | 301 | 7 | 315 | 1.47e-103 | 305 |
| MS.gene50852.t1 | AT1G09480 | 49.201 | 313 | 143 | 1 | 5 | 301 | 7 | 319 | 3.88e-103 | 305 |
| MS.gene50852.t1 | AT1G09480 | 49.201 | 313 | 143 | 1 | 5 | 301 | 54 | 366 | 1.21e-102 | 305 |
| MS.gene50852.t1 | AT1G09490 | 48.882 | 313 | 144 | 1 | 5 | 301 | 7 | 319 | 2.17e-102 | 303 |
| MS.gene50852.t1 | AT1G09500 | 49.216 | 319 | 143 | 3 | 5 | 304 | 7 | 325 | 3.83e-102 | 302 |
| MS.gene50852.t1 | AT1G09500 | 50.000 | 272 | 119 | 1 | 5 | 259 | 7 | 278 | 2.47e-92 | 275 |
| MS.gene50852.t1 | AT4G35420 | 44.654 | 318 | 155 | 5 | 6 | 305 | 8 | 322 | 1.97e-91 | 275 |
| MS.gene50852.t1 | AT1G15950 | 46.645 | 313 | 150 | 6 | 3 | 301 | 10 | 319 | 1.42e-84 | 258 |
| MS.gene50852.t1 | AT1G15950 | 46.645 | 313 | 150 | 6 | 3 | 301 | 10 | 319 | 1.42e-84 | 258 |
| MS.gene50852.t1 | AT5G58490 | 43.125 | 320 | 160 | 5 | 5 | 305 | 8 | 324 | 4.46e-82 | 251 |
| MS.gene50852.t1 | AT1G15950 | 46.078 | 306 | 148 | 6 | 3 | 294 | 10 | 312 | 5.88e-81 | 249 |
| MS.gene50852.t1 | AT1G09500 | 45.645 | 287 | 137 | 3 | 37 | 304 | 5 | 291 | 1.68e-80 | 246 |
| MS.gene50852.t1 | AT1G80820 | 44.444 | 315 | 158 | 6 | 1 | 301 | 3 | 314 | 2.99e-80 | 246 |
| MS.gene50852.t1 | AT1G09490 | 44.803 | 279 | 138 | 1 | 39 | 301 | 10 | 288 | 3.87e-80 | 245 |
| MS.gene50852.t1 | AT2G02400 | 37.963 | 324 | 175 | 7 | 1 | 304 | 1 | 318 | 2.99e-73 | 228 |
| MS.gene50852.t1 | AT1G15950 | 47.037 | 270 | 127 | 5 | 3 | 259 | 10 | 276 | 1.28e-71 | 223 |
| MS.gene50852.t1 | AT1G15950 | 46.403 | 278 | 132 | 6 | 3 | 267 | 10 | 283 | 2.10e-71 | 223 |
| MS.gene50852.t1 | AT1G68540 | 38.435 | 294 | 161 | 4 | 8 | 282 | 6 | 298 | 3.98e-71 | 223 |
| MS.gene50852.t1 | AT1G15950 | 47.547 | 265 | 123 | 5 | 6 | 257 | 13 | 274 | 5.70e-71 | 221 |
| MS.gene50852.t1 | AT1G80820 | 44.485 | 272 | 135 | 5 | 1 | 259 | 3 | 271 | 6.77e-66 | 208 |
| MS.gene50852.t1 | AT5G42800 | 37.383 | 321 | 176 | 6 | 6 | 304 | 8 | 325 | 2.36e-64 | 207 |
| MS.gene50852.t1 | AT2G33590 | 39.185 | 319 | 169 | 6 | 6 | 305 | 9 | 321 | 5.84e-63 | 202 |
| MS.gene50852.t1 | AT1G25460 | 36.422 | 313 | 178 | 6 | 8 | 301 | 6 | 316 | 1.78e-62 | 201 |
| MS.gene50852.t1 | AT2G33600 | 40.062 | 322 | 162 | 8 | 6 | 305 | 9 | 321 | 3.56e-59 | 192 |
| MS.gene50852.t1 | AT1G76470 | 40.252 | 318 | 159 | 9 | 6 | 299 | 7 | 317 | 1.23e-58 | 191 |
| MS.gene50852.t1 | AT1G15950 | 44.843 | 223 | 119 | 4 | 81 | 301 | 1 | 221 | 3.40e-53 | 174 |
| MS.gene50852.t1 | AT1G61720 | 34.356 | 326 | 180 | 7 | 3 | 300 | 10 | 329 | 2.51e-51 | 172 |
| MS.gene50852.t1 | AT4G27250 | 33.232 | 328 | 182 | 9 | 7 | 303 | 14 | 335 | 4.32e-47 | 161 |
| MS.gene50852.t1 | AT4G27250 | 33.234 | 337 | 180 | 11 | 7 | 303 | 14 | 345 | 7.37e-47 | 161 |
| MS.gene50852.t1 | AT2G45400 | 32.899 | 307 | 181 | 5 | 3 | 284 | 37 | 343 | 1.43e-44 | 155 |
| MS.gene50852.t1 | AT2G45400 | 33.571 | 280 | 161 | 5 | 3 | 257 | 37 | 316 | 1.31e-43 | 152 |
| MS.gene50852.t1 | AT1G68540 | 38.021 | 192 | 116 | 3 | 93 | 282 | 1 | 191 | 1.20e-41 | 144 |
| MS.gene50852.t1 | AT2G23910 | 29.478 | 268 | 170 | 5 | 7 | 259 | 11 | 274 | 5.76e-41 | 144 |
| MS.gene50852.t1 | AT2G23910 | 29.699 | 266 | 168 | 5 | 7 | 257 | 11 | 272 | 8.10e-41 | 143 |
| MS.gene50852.t1 | AT2G23910 | 29.478 | 268 | 170 | 5 | 7 | 259 | 11 | 274 | 9.75e-41 | 144 |
| MS.gene50852.t1 | AT4G30470 | 29.412 | 272 | 174 | 5 | 2 | 259 | 6 | 273 | 1.78e-39 | 140 |
| MS.gene50852.t1 | AT2G45400 | 36.073 | 219 | 117 | 4 | 3 | 198 | 37 | 255 | 5.11e-36 | 130 |
| MS.gene50852.t1 | AT2G23910 | 28.761 | 226 | 142 | 5 | 49 | 259 | 19 | 240 | 1.54e-30 | 116 |
| MS.gene50852.t1 | AT2G45400 | 29.630 | 270 | 167 | 4 | 38 | 284 | 17 | 286 | 2.41e-28 | 111 |
| MS.gene50852.t1 | AT5G14700 | 25.965 | 285 | 178 | 10 | 5 | 262 | 54 | 332 | 2.16e-25 | 104 |
| MS.gene50852.t1 | AT5G14700 | 27.397 | 219 | 132 | 7 | 2 | 197 | 51 | 265 | 7.53e-21 | 90.9 |
Find 0 sgRNAs with CRISPR-Local
Find 137 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATAATCAAATCAAACAT+AGG | + | 21095:13246-13265 | None:intergenic | 15.0% |
| !! | TAATAATCAAATCAAACATA+GGG | + | 21095:13245-13264 | None:intergenic | 15.0% |
| !! | TATAAATGTAAATACAGAAA+TGG | + | 21095:15114-15133 | None:intergenic | 15.0% |
| !! | TATTTAATACATACAGAAAA+AGG | - | 21095:14697-14716 | MS.gene50852:CDS | 15.0% |
| !!! | AATTAAGTGTTTCTAAAATA+AGG | - | 21095:14990-15009 | MS.gene50852:CDS | 15.0% |
| !!! | TATGTTTGATTTGATTATTA+TGG | - | 21095:13245-13264 | MS.gene50852:intron | 15.0% |
| !! | AATTATTAATCTTACTTCTC+TGG | + | 21095:14518-14537 | None:intergenic | 20.0% |
| !! | ATTATTAATCTTACTTCTCT+GGG | + | 21095:14517-14536 | None:intergenic | 20.0% |
| !! | CCATTACAATAAAACAAAAA+TGG | + | 21095:14098-14117 | None:intergenic | 20.0% |
| !! | GAAAAATTTCAACAATTTAG+AGG | - | 21095:14739-14758 | MS.gene50852:CDS | 20.0% |
| !! | GTAATTAATTACCATTAATC+AGG | + | 21095:14076-14095 | None:intergenic | 20.0% |
| !! | TAAAATTCAATAAGCAACAA+TGG | + | 21095:14199-14218 | None:intergenic | 20.0% |
| !! | TAAAGAAAACAACATTGATA+TGG | - | 21095:13974-13993 | MS.gene50852:intron | 20.0% |
| !! | TGATAGCATAATTTATTACA+TGG | + | 21095:13861-13880 | None:intergenic | 20.0% |
| !!! | CCATTTTTGTTTTATTGTAA+TGG | - | 21095:14095-14114 | MS.gene50852:intron | 20.0% |
| !!! | TGCACTTTTTAACATATATT+CGG | - | 21095:14790-14809 | MS.gene50852:CDS | 20.0% |
| ! | AACATTTCCAAATTCTACTT+TGG | - | 21095:14343-14362 | MS.gene50852:CDS | 25.0% |
| ! | AAGTATAGCAACTTTAAATG+TGG | - | 21095:15015-15034 | MS.gene50852:intron | 25.0% |
| ! | AATTCAGTGCTAAAAATGAA+AGG | - | 21095:14639-14658 | MS.gene50852:intron | 25.0% |
| ! | ACATTTCCAAATTCTACTTT+GGG | - | 21095:14344-14363 | MS.gene50852:CDS | 25.0% |
| ! | ACGAAAAATTCAGTACAAAT+TGG | + | 21095:14948-14967 | None:intergenic | 25.0% |
| ! | ATGTATTAAATAAACAACCC+TGG | + | 21095:14689-14708 | None:intergenic | 25.0% |
| ! | ATTATGTTCCTAAATGAATG+CGG | - | 21095:14562-14581 | MS.gene50852:intron | 25.0% |
| ! | CATAATTTATTACATGGCAT+TGG | + | 21095:13855-13874 | None:intergenic | 25.0% |
| ! | GGATATTAAACAACATTTGT+AGG | + | 21095:15046-15065 | None:intergenic | 25.0% |
| ! | TAACCATTAACCTATGATTT+CGG | + | 21095:15067-15086 | None:intergenic | 25.0% |
| ! | TACAGAAGACATAAAAATAG+AGG | + | 21095:14903-14922 | None:intergenic | 25.0% |
| ! | TCATATCAAACGAAAATAAC+AGG | + | 21095:14156-14175 | None:intergenic | 25.0% |
| ! | TGTTTAATATCCGAAATCAT+AGG | - | 21095:15054-15073 | MS.gene50852:intron | 25.0% |
| !! | ACATTTAAAGTTGCTATACT+TGG | + | 21095:15016-15035 | None:intergenic | 25.0% |
| !! | ATATCAGTTTTCCAAAGAAA+AGG | - | 21095:15233-15252 | MS.gene50852:intron | 25.0% |
| !! | GAAACCATGTTTTACATATT+GGG | + | 21095:14824-14843 | None:intergenic | 25.0% |
| !! | TGAAACCATGTTTTACATAT+TGG | + | 21095:14825-14844 | None:intergenic | 25.0% |
| !! | TGATTTTGTAAGTTTAGCTA+GGG | + | 21095:13649-13668 | None:intergenic | 25.0% |
| AATAAGCAACAATGGATGTT+GGG | + | 21095:14191-14210 | None:intergenic | 30.0% | |
| ATAAGAATCCGCATTCATTT+AGG | + | 21095:14573-14592 | None:intergenic | 30.0% | |
| CAAATATGTTTGTGTTCAAG+AGG | - | 21095:14262-14281 | MS.gene50852:CDS | 30.0% | |
| CATCACTAATATTTGATCCA+GGG | - | 21095:14669-14688 | MS.gene50852:CDS | 30.0% | |
| GAAGACATAAAAATAGAGGA+AGG | + | 21095:14899-14918 | None:intergenic | 30.0% | |
| GCAATTCTAAACCTGATTAA+TGG | - | 21095:14062-14081 | MS.gene50852:intron | 30.0% | |
| GGAGAGATTACAATTATTCA+AGG | - | 21095:13324-13343 | MS.gene50852:intron | 30.0% | |
| TATCCGAAATCATAGGTTAA+TGG | - | 21095:15061-15080 | MS.gene50852:intron | 30.0% | |
| TCATCACTAATATTTGATCC+AGG | - | 21095:14668-14687 | MS.gene50852:intron | 30.0% | |
| TCTTTGACATCATGATAGAA+GGG | + | 21095:13421-13440 | None:intergenic | 30.0% | |
| TGTCAACTATATATGTTACC+AGG | - | 21095:15181-15200 | MS.gene50852:intron | 30.0% | |
| TTTAACATATATTCGGCTTC+TGG | - | 21095:14797-14816 | MS.gene50852:CDS | 30.0% | |
| ! | AGCAAGGACTAAATTGTTTT+TGG | - | 21095:13727-13746 | MS.gene50852:intron | 30.0% |
| ! | GTGATTTTGTAAGTTTAGCT+AGG | + | 21095:13650-13669 | None:intergenic | 30.0% |
| ! | TCTTTGGAAAACTGATATGT+AGG | + | 21095:15231-15250 | None:intergenic | 30.0% |
| !!! | TAATGGTTTTGTTCCAATGT+CGG | - | 21095:13813-13832 | MS.gene50852:CDS | 30.0% |
| AAAGAAAAGGCAAAGAGCTT+GGG | - | 21095:15246-15265 | MS.gene50852:CDS | 35.0% | |
| AACCATTAGCTAGCATGTTA+TGG | + | 21095:13801-13820 | None:intergenic | 35.0% | |
| AACTGATATGTAGGCACATA+TGG | + | 21095:15222-15241 | None:intergenic | 35.0% | |
| AAGGCAAATCTACTTGAACA+GGG | - | 21095:13343-13362 | MS.gene50852:intron | 35.0% | |
| AATGAATGCGGATTCTTATC+TGG | - | 21095:14574-14593 | MS.gene50852:intron | 35.0% | |
| AGAGAAGAGAATGACTTACT+TGG | + | 21095:13072-13091 | None:intergenic | 35.0% | |
| ATAAGCAACAATGGATGTTG+GGG | + | 21095:14190-14209 | None:intergenic | 35.0% | |
| ATGTTTGTGTACCTGTATCA+AGG | + | 21095:14328-14347 | None:intergenic | 35.0% | |
| CAATAAGCAACAATGGATGT+TGG | + | 21095:14192-14211 | None:intergenic | 35.0% | |
| CACTGAATTGAGTTTCAAAC+AGG | + | 21095:14628-14647 | None:intergenic | 35.0% | |
| CCATAACATCTTCAATAGCA+AGG | - | 21095:13711-13730 | MS.gene50852:intron | 35.0% | |
| CTAGGGAGATACGTTTAATT+TGG | + | 21095:13632-13651 | None:intergenic | 35.0% | |
| GAGAAGAGAATGACTTACTT+GGG | + | 21095:13071-13090 | None:intergenic | 35.0% | |
| GGGAATTGAATATACTCCTT+TGG | - | 21095:15266-15285 | MS.gene50852:CDS | 35.0% | |
| GTCTTTGACATCATGATAGA+AGG | + | 21095:13422-13441 | None:intergenic | 35.0% | |
| TATATATGTTACCAGGTGTG+CGG | - | 21095:15188-15207 | MS.gene50852:intron | 35.0% | |
| TGGACCCAATATGTAAAACA+TGG | - | 21095:14817-14836 | MS.gene50852:CDS | 35.0% | |
| ! | TTCACAGATGTTTTGCTACT+GGG | - | 21095:14841-14860 | MS.gene50852:CDS | 35.0% |
| ! | TTCCAAATTCTACTTTGGGA+TGG | - | 21095:14348-14367 | MS.gene50852:CDS | 35.0% |
| ! | TTTCACAGATGTTTTGCTAC+TGG | - | 21095:14840-14859 | MS.gene50852:CDS | 35.0% |
| !! | CCTTGCTATTGAAGATGTTA+TGG | + | 21095:13714-13733 | None:intergenic | 35.0% |
| !! | TCCAAATTCTACTTTGGGAT+GGG | - | 21095:14349-14368 | MS.gene50852:CDS | 35.0% |
| !! | TTTATTACATGGCATTGGCA+TGG | + | 21095:13850-13869 | None:intergenic | 35.0% |
| AACCACTTGGTTAAGCTTGA+AGG | - | 21095:13295-13314 | MS.gene50852:intron | 40.0% | |
| AAGACAACACGTTTCAGTGA+TGG | + | 21095:13514-13533 | None:intergenic | 40.0% | |
| ACCAAGTGGTTGATCTTCTT+CGG | + | 21095:13286-13305 | None:intergenic | 40.0% | |
| ACCCATCCCAAAGTAGAATT+TGG | + | 21095:14353-14372 | None:intergenic | 40.0% | |
| ACGGACATAGACACAAACAT+CGG | + | 21095:13206-13225 | None:intergenic | 40.0% | |
| AGAGAGCTATTATCTGCAGA+AGG | + | 21095:14300-14319 | None:intergenic | 40.0% | |
| AGCTAGTGGAAGACATTGTT+TGG | - | 21095:14424-14443 | MS.gene50852:intron | 40.0% | |
| ATCTTCTTCGGATCATCTAC+AGG | + | 21095:13274-13293 | None:intergenic | 40.0% | |
| ATTAACCCAGCAATGGTCAT+AGG | - | 21095:14002-14021 | MS.gene50852:intron | 40.0% | |
| ATTCTCGTACGCCAGAATAT+GGG | + | 21095:14399-14418 | None:intergenic | 40.0% | |
| CAAAGAAAAGGCAAAGAGCT+TGG | - | 21095:15245-15264 | MS.gene50852:CDS | 40.0% | |
| CAAGGCAAATCTACTTGAAC+AGG | - | 21095:13342-13361 | MS.gene50852:intron | 40.0% | |
| CTTTAACAGTGTAACCACGA+TGG | + | 21095:13035-13054 | None:intergenic | 40.0% | |
| GGTTACTATTAACCCAGCAA+TGG | - | 21095:13995-14014 | MS.gene50852:intron | 40.0% | |
| GTATGCGGTTTCGAAAACAT+TGG | - | 21095:13926-13945 | MS.gene50852:CDS | 40.0% | |
| GTCCATAACATGCTAGCTAA+TGG | - | 21095:13796-13815 | MS.gene50852:CDS | 40.0% | |
| TGTTGCAAATGCCCATATTC+TGG | - | 21095:14385-14404 | MS.gene50852:intron | 40.0% | |
| TTAACCCAGCAATGGTCATA+GGG | - | 21095:14003-14022 | MS.gene50852:intron | 40.0% | |
| TTGATTGATCCTGCACTCAA+CGG | - | 21095:13454-13473 | MS.gene50852:intron | 40.0% | |
| TTGCTACTGGGTAACTTGAA+TGG | - | 21095:14853-14872 | MS.gene50852:intron | 40.0% | |
| ! | ATGTTGTTGTTGACGAGACT+TGG | - | 21095:13584-13603 | MS.gene50852:intron | 40.0% |
| ! | CAAGCTCTTTGCCTTTTCTT+TGG | + | 21095:15247-15266 | None:intergenic | 40.0% |
| ! | CTTCAGGTTACATAGCTTCA+TGG | - | 21095:12992-13011 | MS.gene50852:CDS | 40.0% |
| ACAACAACATCAGGAGTTCG+AGG | + | 21095:13574-13593 | None:intergenic | 45.0% | |
| ACTGTTTCAGCTGTGGTATG+CGG | - | 21095:13911-13930 | MS.gene50852:CDS | 45.0% | |
| AGCAACGTTGTGTGTGTAAC+TGG | - | 21095:12967-12986 | MS.gene50852:CDS | 45.0% | |
| CACCTTCAAGCTTAACCAAG+TGG | + | 21095:13300-13319 | None:intergenic | 45.0% | |
| CATAGACACAAACATCGGAC+AGG | + | 21095:13201-13220 | None:intergenic | 45.0% | |
| CATTCTCGTACGCCAGAATA+TGG | + | 21095:14400-14419 | None:intergenic | 45.0% | |
| CCACAGCTGAAACAGTCAAT+AGG | + | 21095:13907-13926 | None:intergenic | 45.0% | |
| CTCTCTCACTTCCTTGATAC+AGG | - | 21095:14314-14333 | MS.gene50852:CDS | 45.0% | |
| GATCAATCAACTCAGCCTGA+GGG | + | 21095:13444-13463 | None:intergenic | 45.0% | |
| GCCTTGAACAGCAGAATCAA+AGG | + | 21095:13371-13390 | None:intergenic | 45.0% | |
| GCCTTTGATTCTGCTGTTCA+AGG | - | 21095:13367-13386 | MS.gene50852:intron | 45.0% | |
| GGGTCAAAACGTATGAAGCA+CGG | + | 21095:13225-13244 | None:intergenic | 45.0% | |
| GTCTCGTCAACAACAACATC+AGG | + | 21095:13583-13602 | None:intergenic | 45.0% | |
| TACGAGAATGCTTCAGCTAG+TGG | - | 21095:14410-14429 | MS.gene50852:intron | 45.0% | |
| TCATGATGTCAAAGACCCTC+AGG | - | 21095:13426-13445 | MS.gene50852:intron | 45.0% | |
| TCCGAAGAAGATCAACCACT+TGG | - | 21095:13282-13301 | MS.gene50852:intron | 45.0% | |
| TCCTTGATGCTCACTTCCAA+AGG | + | 21095:15285-15304 | None:intergenic | 45.0% | |
| TTGCAGCAGCACTTGTGTTT+AGG | + | 21095:14046-14065 | None:intergenic | 45.0% | |
| ! | ACGTTTCAGTGATGGCGATT+TGG | + | 21095:13506-13525 | None:intergenic | 45.0% |
| ! | CCTATTGACTGTTTCAGCTG+TGG | - | 21095:13904-13923 | MS.gene50852:CDS | 45.0% |
| ! | TCCTTTGGAAGTGAGCATCA+AGG | - | 21095:15281-15300 | MS.gene50852:CDS | 45.0% |
| !! | CATGTTATGGACTAGCGCAT+TGG | + | 21095:13788-13807 | None:intergenic | 45.0% |
| !! | GGTTAAGCTTGAAGGTGCTA+AGG | - | 21095:13303-13322 | MS.gene50852:intron | 45.0% |
| !! | TTTAGGACTGGTTGCAAGAG+AGG | + | 21095:14029-14048 | None:intergenic | 45.0% |
| CAGTGTAACCACGATGGAGA+AGG | + | 21095:13029-13048 | None:intergenic | 50.0% | |
| GGATCAATCAACTCAGCCTG+AGG | + | 21095:13445-13464 | None:intergenic | 50.0% | |
| GTGTGTGTAACTGGAGCTTC+AGG | - | 21095:12976-12995 | MS.gene50852:CDS | 50.0% | |
| GTTCGTTACCTTCTCCATCG+TGG | - | 21095:13018-13037 | MS.gene50852:CDS | 50.0% | |
| TCTGCTGTTCAAGGCTGTCA+AGG | - | 21095:13376-13395 | MS.gene50852:intron | 50.0% | |
| TGACTTACTTGGGTCGCGAA+CGG | + | 21095:13061-13080 | None:intergenic | 50.0% | |
| ! | CATTGGCTGAAGAAGCTGCA+TGG | - | 21095:13943-13962 | MS.gene50852:CDS | 50.0% |
| ! | GCAGCACTTGTGTTTAGGAC+TGG | + | 21095:14041-14060 | None:intergenic | 50.0% |
| ! | TCTCTGGGAGTTGCAACGAA+GGG | + | 21095:14502-14521 | None:intergenic | 50.0% |
| ! | TTCTCTGGGAGTTGCAACGA+AGG | + | 21095:14503-14522 | None:intergenic | 50.0% |
| !! | TTGAGAGTACCGTTGAGTGC+AGG | + | 21095:13466-13485 | None:intergenic | 50.0% |
| AGAGGCCCTATGACCATTGC+TGG | + | 21095:14011-14030 | None:intergenic | 55.0% | |
| GAGGCCCTATGACCATTGCT+GGG | + | 21095:14010-14029 | None:intergenic | 55.0% | |
| GGCACACACTTTGCCGACAT+TGG | + | 21095:13829-13848 | None:intergenic | 55.0% | |
| CGCAACAGCAGCAGCAGAAG+AGG | + | 21095:13539-13558 | None:intergenic | 60.0% | |
| CTTACTTGGGTCGCGAACGG+TGG | + | 21095:13058-13077 | None:intergenic | 60.0% | |
| TGGCTTATCGTCCGCACACC+TGG | + | 21095:15202-15221 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 21095 | gene | 12961 | 15347 | 12961 | ID=MS.gene50852 |
| 21095 | mRNA | 12961 | 15347 | 12961 | ID=MS.gene50852.t1;Parent=MS.gene50852 |
| 21095 | exon | 15236 | 15347 | 15236 | ID=MS.gene50852.t1.exon1;Parent=MS.gene50852.t1 |
| 21095 | CDS | 15236 | 15347 | 15236 | ID=cds.MS.gene50852.t1;Parent=MS.gene50852.t1 |
| 21095 | exon | 14909 | 15030 | 14909 | ID=MS.gene50852.t1.exon2;Parent=MS.gene50852.t1 |
| 21095 | CDS | 14909 | 15030 | 14909 | ID=cds.MS.gene50852.t1;Parent=MS.gene50852.t1 |
| 21095 | exon | 14669 | 14860 | 14669 | ID=MS.gene50852.t1.exon3;Parent=MS.gene50852.t1 |
| 21095 | CDS | 14669 | 14860 | 14669 | ID=cds.MS.gene50852.t1;Parent=MS.gene50852.t1 |
| 21095 | exon | 14225 | 14387 | 14225 | ID=MS.gene50852.t1.exon4;Parent=MS.gene50852.t1 |
| 21095 | CDS | 14225 | 14387 | 14225 | ID=cds.MS.gene50852.t1;Parent=MS.gene50852.t1 |
| 21095 | exon | 13786 | 13972 | 13786 | ID=MS.gene50852.t1.exon5;Parent=MS.gene50852.t1 |
| 21095 | CDS | 13786 | 13972 | 13786 | ID=cds.MS.gene50852.t1;Parent=MS.gene50852.t1 |
| 21095 | exon | 12961 | 13105 | 12961 | ID=MS.gene50852.t1.exon6;Parent=MS.gene50852.t1 |
| 21095 | CDS | 12961 | 13105 | 12961 | ID=cds.MS.gene50852.t1;Parent=MS.gene50852.t1 |
| Gene Sequence |
| Protein sequence |
