Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90774.t1 | XP_013446118.1 | 99.7 | 332 | 1 | 0 | 1 | 332 | 1 | 332 | 1.30E-172 | 616.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90774.t1 | Q38942 | 85.6 | 333 | 47 | 1 | 1 | 332 | 1 | 333 | 6.5e-152 | 538.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90774.t1 | A0A072U2U6 | 99.7 | 332 | 1 | 0 | 1 | 332 | 1 | 332 | 9.6e-173 | 616.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene90774 | MS.gene86831 | PPI |
| MS.gene90774 | MS.gene62514 | PPI |
| MS.gene90774 | MS.gene55320 | PPI |
| MS.gene022537 | MS.gene90774 | PPI |
| MS.gene07517 | MS.gene90774 | PPI |
| MS.gene060071 | MS.gene90774 | PPI |
| MS.gene90774 | MS.gene92360 | PPI |
| MS.gene90774 | MS.gene85897 | PPI |
| MS.gene90774 | MS.gene066387 | PPI |
| MS.gene90774 | MS.gene79186 | PPI |
| MS.gene90774 | MS.gene00617 | PPI |
| MS.gene90774 | MS.gene060067 | PPI |
| MS.gene90774 | MS.gene024963 | PPI |
| MS.gene90774 | MS.gene072058 | PPI |
| MS.gene90774 | MS.gene004979 | PPI |
| MS.gene90774 | MS.gene047200 | PPI |
| MS.gene90774 | MS.gene060069 | PPI |
| MS.gene90774 | MS.gene046944 | PPI |
| MS.gene90774 | MS.gene61568 | PPI |
| MS.gene90774 | MS.gene40528 | PPI |
| MS.gene90774 | MS.gene065809 | PPI |
| MS.gene90774 | MS.gene000251 | PPI |
| MS.gene024963 | MS.gene90774 | PPI |
| MS.gene90774 | MS.gene53114 | PPI |
| MS.gene90774 | MS.gene79188 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90774.t1 | MTR_8g068875 | 99.398 | 332 | 2 | 0 | 1 | 332 | 1 | 332 | 0.0 | 703 |
| MS.gene90774.t1 | MTR_1g492860 | 87.952 | 332 | 38 | 1 | 1 | 332 | 1 | 330 | 0.0 | 611 |
| MS.gene90774.t1 | MTR_2g008410 | 85.266 | 319 | 46 | 1 | 15 | 332 | 17 | 335 | 0.0 | 599 |
| MS.gene90774.t1 | MTR_2g008410 | 80.564 | 319 | 43 | 2 | 15 | 332 | 17 | 317 | 0.0 | 555 |
| MS.gene90774.t1 | MTR_2g008410 | 88.476 | 269 | 31 | 0 | 64 | 332 | 2 | 270 | 0.0 | 527 |
| MS.gene90774.t1 | MTR_2g008410 | 82.900 | 269 | 28 | 1 | 64 | 332 | 2 | 252 | 6.59e-171 | 483 |
| MS.gene90774.t1 | MTR_8g068855 | 96.855 | 159 | 5 | 0 | 373 | 531 | 81 | 239 | 1.90e-111 | 331 |
| MS.gene90774.t1 | MTR_5g005120 | 34.295 | 312 | 186 | 6 | 18 | 318 | 15 | 318 | 4.12e-57 | 194 |
| MS.gene90774.t1 | MTR_5g043000 | 27.586 | 319 | 216 | 7 | 8 | 319 | 2 | 312 | 1.79e-27 | 113 |
| MS.gene90774.t1 | MTR_2g436510 | 24.516 | 310 | 191 | 11 | 13 | 309 | 159 | 438 | 1.50e-12 | 70.1 |
| MS.gene90774.t1 | MTR_6g004040 | 34.211 | 114 | 70 | 1 | 28 | 141 | 105 | 213 | 2.32e-11 | 67.0 |
| MS.gene90774.t1 | MTR_2g012630 | 33.333 | 114 | 71 | 1 | 28 | 141 | 104 | 212 | 4.94e-11 | 66.2 |
| MS.gene90774.t1 | MTR_2g012630 | 33.333 | 114 | 71 | 1 | 28 | 141 | 104 | 212 | 5.42e-11 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90774.t1 | AT1G80670 | 84.384 | 333 | 51 | 1 | 1 | 332 | 1 | 333 | 0.0 | 610 |
| MS.gene90774.t1 | AT4G38090 | 74.375 | 160 | 40 | 1 | 373 | 531 | 74 | 233 | 2.57e-83 | 259 |
| MS.gene90774.t1 | AT1G15850 | 72.143 | 140 | 37 | 1 | 1 | 138 | 1 | 140 | 3.31e-66 | 211 |
| MS.gene90774.t1 | AT3G19590 | 35.714 | 322 | 188 | 7 | 9 | 319 | 2 | 315 | 1.99e-59 | 200 |
| MS.gene90774.t1 | AT4G38090 | 79.091 | 110 | 22 | 1 | 373 | 481 | 74 | 183 | 1.46e-56 | 187 |
| MS.gene90774.t1 | AT1G49910 | 33.962 | 318 | 191 | 7 | 13 | 319 | 5 | 314 | 2.12e-55 | 189 |
| MS.gene90774.t1 | AT4G38090 | 79.121 | 91 | 18 | 1 | 373 | 462 | 74 | 164 | 4.54e-45 | 157 |
| MS.gene90774.t1 | AT1G69400 | 26.059 | 307 | 207 | 7 | 18 | 315 | 7 | 302 | 4.41e-28 | 114 |
| MS.gene90774.t1 | AT1G69400 | 25.197 | 254 | 166 | 7 | 18 | 258 | 7 | 249 | 3.53e-21 | 94.0 |
| MS.gene90774.t1 | AT1G11160 | 34.211 | 114 | 70 | 1 | 28 | 141 | 104 | 212 | 7.57e-13 | 72.0 |
| MS.gene90774.t1 | AT1G11160 | 24.583 | 240 | 160 | 8 | 68 | 299 | 12 | 238 | 2.31e-12 | 70.5 |
| MS.gene90774.t1 | AT1G11160 | 34.211 | 114 | 70 | 1 | 28 | 141 | 104 | 212 | 7.69e-13 | 72.0 |
| MS.gene90774.t1 | AT1G11160 | 24.583 | 240 | 160 | 8 | 68 | 299 | 12 | 238 | 2.75e-12 | 70.1 |
| MS.gene90774.t1 | AT1G11160 | 34.211 | 114 | 70 | 1 | 28 | 141 | 62 | 170 | 7.77e-13 | 72.0 |
| MS.gene90774.t1 | AT1G11160 | 34.211 | 114 | 70 | 1 | 28 | 141 | 104 | 212 | 7.83e-13 | 72.0 |
| MS.gene90774.t1 | AT1G11160 | 24.583 | 240 | 160 | 8 | 68 | 299 | 12 | 238 | 2.61e-12 | 70.1 |
| MS.gene90774.t1 | AT1G61210 | 34.211 | 114 | 70 | 1 | 28 | 141 | 104 | 212 | 1.58e-12 | 70.9 |
| MS.gene90774.t1 | AT4G15900 | 23.871 | 310 | 193 | 10 | 13 | 309 | 165 | 444 | 1.80e-12 | 70.1 |
| MS.gene90774.t1 | AT1G61210 | 34.211 | 114 | 70 | 1 | 28 | 141 | 104 | 212 | 2.47e-12 | 70.5 |
| MS.gene90774.t1 | AT1G61210 | 34.211 | 114 | 70 | 1 | 28 | 141 | 104 | 212 | 2.51e-12 | 70.5 |
| MS.gene90774.t1 | AT5G67320 | 21.656 | 314 | 213 | 7 | 13 | 303 | 254 | 557 | 4.84e-12 | 68.9 |
| MS.gene90774.t1 | AT5G23430 | 33.628 | 113 | 70 | 1 | 29 | 141 | 106 | 213 | 1.46e-11 | 67.8 |
| MS.gene90774.t1 | AT5G23430 | 33.628 | 113 | 70 | 1 | 29 | 141 | 106 | 213 | 1.47e-11 | 67.8 |
| MS.gene90774.t1 | AT5G23430 | 33.628 | 113 | 70 | 1 | 29 | 141 | 106 | 213 | 1.47e-11 | 67.8 |
| MS.gene90774.t1 | AT3G16650 | 22.876 | 306 | 200 | 9 | 13 | 309 | 159 | 437 | 2.03e-11 | 66.6 |
| MS.gene90774.t1 | AT5G08390 | 33.628 | 113 | 70 | 1 | 29 | 141 | 106 | 213 | 2.10e-11 | 67.4 |
Find 127 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATATTGAATTTCAGGTATTT+TGG | 0.175352 | 8.3:+34201740 | MS.gene90774:intron |
| CACATCTTGTCTGATATTTC+AGG | 0.189087 | 8.3:-34189468 | None:intergenic |
| TCATAATTGCTGGGCTTATA+AGG | 0.245654 | 8.3:+34199342 | MS.gene90774:CDS |
| ATTTCCTTGTCGCTACTTCC+TGG | 0.247445 | 8.3:+34186379 | MS.gene90774:CDS |
| TATTACCGGATGGAAATTTA+AGG | 0.288149 | 8.3:-34190166 | None:intergenic |
| GTCAACAGACCGAGTATAAA+AGG | 0.294586 | 8.3:+34189434 | MS.gene90774:intron |
| TATTCTGCCATTTCTACTTC+AGG | 0.310585 | 8.3:+34201463 | MS.gene90774:CDS |
| GCATACCGCGTAAGCATATA+TGG | 0.318779 | 8.3:-34190533 | None:intergenic |
| GGAGGATTAGTCAGGGCTTA+TGG | 0.319341 | 8.3:+34201782 | MS.gene90774:CDS |
| CCTTGGCCTTGCACTAGAAT+TGG | 0.334393 | 8.3:-34197903 | None:intergenic |
| CCGATCAACATGTCTTCTTT+CGG | 0.336166 | 8.3:+34186179 | None:intergenic |
| GGAAGTAGCGACAAGGAAAT+TGG | 0.350526 | 8.3:-34186376 | None:intergenic |
| TGCAACATTACCTCTGAATC+TGG | 0.350579 | 8.3:-34197463 | None:intergenic |
| GTCTATAGGTTTGCTATGAT+TGG | 0.355699 | 8.3:+34193496 | MS.gene90774:intron |
| CTTCAATTCTCTGCTACAAT+TGG | 0.357202 | 8.3:-34203257 | None:intergenic |
| GTAGAAATGGCAGAATATAT+TGG | 0.357352 | 8.3:-34201457 | None:intergenic |
| CCTTAGCATGTTCAGGTCCT+TGG | 0.358887 | 8.3:-34197920 | None:intergenic |
| TGCACTAGAATTGGAATTTG+AGG | 0.369295 | 8.3:-34197894 | None:intergenic |
| ATTACCTCATAGGATTTGTT+TGG | 0.383763 | 8.3:-34186224 | None:intergenic |
| GCGACAAGGAAATTGGCTTT+AGG | 0.385636 | 8.3:-34186369 | None:intergenic |
| ATGTAGTTCTTTGCTGTAGT+TGG | 0.387737 | 8.3:-34193543 | None:intergenic |
| CAAAGGCTACTCATAATTGC+TGG | 0.395686 | 8.3:+34199332 | MS.gene90774:CDS |
| GCAACTACCTTAGCATGTTC+AGG | 0.398396 | 8.3:-34197927 | None:intergenic |
| TTGTATAGACACATGGAAAC+TGG | 0.404882 | 8.3:+34197849 | MS.gene90774:intron |
| ATCTATTCCTGAAGTAGAAA+TGG | 0.405084 | 8.3:-34201470 | None:intergenic |
| GAAGTTCCCTTTGACTTACT+TGG | 0.414507 | 8.3:+34202010 | MS.gene90774:CDS |
| AATGCATAGCATTACCTCAT+AGG | 0.420572 | 8.3:-34186234 | None:intergenic |
| CAGCAATTATGAGTAGCCTT+TGG | 0.422951 | 8.3:-34199331 | None:intergenic |
| GACATTGTATAACATCGATC+AGG | 0.430312 | 8.3:-34188402 | None:intergenic |
| ATTGAATGTACCACAAGGTA+TGG | 0.430485 | 8.3:-34190500 | None:intergenic |
| AATGCATTACGGGTTGATCA+TGG | 0.445220 | 8.3:-34186558 | None:intergenic |
| GCGTTAGGTATTGGGATACT+AGG | 0.449325 | 8.3:+34188349 | MS.gene90774:intron |
| TGAAGGTTCACCATCATCAT+TGG | 0.449328 | 8.3:-34201419 | None:intergenic |
| CGCTACTTCCTGGGATAACC+AGG | 0.451267 | 8.3:+34186389 | MS.gene90774:CDS |
| AATGATGATGGTGAACCTTC+AGG | 0.453113 | 8.3:+34201421 | MS.gene90774:CDS |
| GAGTAATGGTGGTTGTGATC+AGG | 0.457877 | 8.3:+34201494 | MS.gene90774:CDS |
| ATCATGGGAAATTGAAGCCT+TGG | 0.458810 | 8.3:-34186542 | None:intergenic |
| AATTGAAGCCTTGGGTGTAC+TGG | 0.459351 | 8.3:-34186533 | None:intergenic |
| TGAAGGTGTTGTGCTCTGCT+TGG | 0.460595 | 8.3:+34186671 | MS.gene90774:intron |
| TAGGCACTGGAGGATTAGTC+AGG | 0.464593 | 8.3:+34201774 | MS.gene90774:CDS |
| TTCAGGAGGTTGTGACAAGC+AGG | 0.466291 | 8.3:+34186717 | MS.gene90774:CDS |
| TTTCCTTGTCGCTACTTCCT+GGG | 0.467449 | 8.3:+34186380 | MS.gene90774:CDS |
| ATCCATGCAATCTCTTTGAT+AGG | 0.470416 | 8.3:-34186799 | None:intergenic |
| TGTGGTACATTCAATAATGA+TGG | 0.470459 | 8.3:+34190508 | MS.gene90774:CDS |
| CTTCAACTTGCAGAATCCTC+AGG | 0.486798 | 8.3:+34188476 | MS.gene90774:CDS |
| GGGAGTTGTTGAGTATGCAC+TGG | 0.487395 | 8.3:-34188381 | None:intergenic |
| TGCTCTGCTTGGAAAGATGA+TGG | 0.491720 | 8.3:+34186682 | MS.gene90774:CDS |
| AGAATTGGAATTTGAGGCAA+AGG | 0.492256 | 8.3:-34197888 | None:intergenic |
| ACATCTTGTCTGATATTTCA+GGG | 0.499390 | 8.3:-34189467 | None:intergenic |
| CAAAGAGATTGCATGGATAC+CGG | 0.503787 | 8.3:+34186804 | MS.gene90774:CDS |
| TGCTTTGTTGTGCATCATCA+AGG | 0.506986 | 8.3:-34190089 | None:intergenic |
| GGTGAACCTTCAGGTACGGC+TGG | 0.510327 | 8.3:+34201430 | MS.gene90774:CDS |
| TTTAGGACTGAAAGAAAGAC+TGG | 0.514761 | 8.3:-34186352 | None:intergenic |
| CAACTCCTTAAATTTCCATC+CGG | 0.514790 | 8.3:+34190161 | MS.gene90774:CDS |
| CTCCTATCAAAGAGATTGCA+TGG | 0.517842 | 8.3:+34186797 | MS.gene90774:CDS |
| AACAGGTAGGGGATCAATAT+CGG | 0.518719 | 8.3:+34201395 | MS.gene90774:intron |
| AGAAAGACTGGAAATAGAAT+CGG | 0.522597 | 8.3:-34186340 | None:intergenic |
| GGCTCAATAGAGGGAAGGGT+TGG | 0.523184 | 8.3:+34190057 | MS.gene90774:CDS |
| CTGTAGGTTGGCTCAATAGA+GGG | 0.523662 | 8.3:+34190048 | MS.gene90774:intron |
| GAGTACTCCAAGTAAGTCAA+AGG | 0.524758 | 8.3:-34202017 | None:intergenic |
| GGTGGAATCAAATTAGGCAC+TGG | 0.526846 | 8.3:+34201761 | MS.gene90774:CDS |
| CCTGTAGGTTGGCTCAATAG+AGG | 0.529343 | 8.3:+34190047 | MS.gene90774:intron |
| ACTTGGAGTACTCTACCATC+AGG | 0.530701 | 8.3:+34202027 | MS.gene90774:CDS |
| TGACCGAGCTGAGAAATTGG+AGG | 0.535069 | 8.3:+34203222 | MS.gene90774:CDS |
| CAATATCGGTCCAATGATGA+TGG | 0.537565 | 8.3:+34201409 | MS.gene90774:CDS |
| TGCAAAATGTAGGTGCCAAT+GGG | 0.540519 | 8.3:+34201983 | MS.gene90774:intron |
| TTTGCAACTGCTGGATCTGA+CGG | 0.543216 | 8.3:+34190306 | MS.gene90774:CDS |
| TCATGGGAAATTGAAGCCTT+GGG | 0.543744 | 8.3:-34186541 | None:intergenic |
| ATGAAGCAAGATTATGATAC+GGG | 0.544351 | 8.3:+34203160 | MS.gene90774:CDS |
| AATGTAGGTGCCAATGGGTG+TGG | 0.545761 | 8.3:+34201988 | MS.gene90774:intron |
| GTTTGCTATGATTGGAGCAA+AGG | 0.546194 | 8.3:+34193504 | MS.gene90774:CDS |
| GAGACATCCTCTGATGGTTG+TGG | 0.546885 | 8.3:+34188428 | MS.gene90774:CDS |
| AAATCCAAACAAATCCTATG+AGG | 0.547226 | 8.3:+34186220 | MS.gene90774:CDS |
| ATGCATTACGGGTTGATCAT+GGG | 0.548915 | 8.3:-34186557 | None:intergenic |
| CATGAAGCAAGATTATGATA+CGG | 0.552558 | 8.3:+34203159 | MS.gene90774:CDS |
| AAGGGAACTTCCACACCCAT+TGG | 0.558066 | 8.3:-34201998 | None:intergenic |
| TCATGCATAGCAACGGTCAC+GGG | 0.559382 | 8.3:-34186772 | None:intergenic |
| GTGCAAAATGTAGGTGCCAA+TGG | 0.562081 | 8.3:+34201982 | MS.gene90774:intron |
| TTGAATGTACCACAAGGTAT+GGG | 0.565862 | 8.3:-34190499 | None:intergenic |
| TTGTTAGGTTCGGGATCCAA+AGG | 0.567626 | 8.3:+34199315 | MS.gene90774:intron |
| CCAAGGACCTGAACATGCTA+AGG | 0.570688 | 8.3:+34197920 | MS.gene90774:CDS |
| ATCATGCATAGCAACGGTCA+CGG | 0.570899 | 8.3:-34186773 | None:intergenic |
| AAAGGCTACTCATAATTGCT+GGG | 0.573085 | 8.3:+34199333 | MS.gene90774:CDS |
| ATCTTGTTTGTATAGACACA+TGG | 0.573419 | 8.3:+34197842 | MS.gene90774:intron |
| ATCAACTTTAAAAGTAACCA+TGG | 0.577405 | 8.3:-34203197 | None:intergenic |
| TAACGATACCTGGTTATCCC+AGG | 0.577658 | 8.3:-34186397 | None:intergenic |
| GTAGCTAAAAGACTCATCTC+CGG | 0.579801 | 8.3:-34186823 | None:intergenic |
| TATCCTCCAATTTCTCAGCT+CGG | 0.580898 | 8.3:-34203225 | None:intergenic |
| AGTACTCCAAGTAAGTCAAA+GGG | 0.581416 | 8.3:-34202016 | None:intergenic |
| ATCTGGAAAATATTCAGAGA+TGG | 0.586813 | 8.3:-34197446 | None:intergenic |
| GGTTGCCCTCCAGACAAAAG+TGG | 0.588940 | 8.3:-34186751 | None:intergenic |
| GAAGACAATCAGATTCCTAT+CGG | 0.589539 | 8.3:-34188457 | None:intergenic |
| CATATATATGCACTTACCAC+AGG | 0.593393 | 8.3:+34193563 | MS.gene90774:CDS |
| CAAATTCCAATTCTAGTGCA+AGG | 0.594956 | 8.3:+34197897 | MS.gene90774:CDS |
| AAGACTGGAAATAGAATCGG+TGG | 0.606098 | 8.3:-34186337 | None:intergenic |
| GGTTGGCTCAATAGAGGGAA+GGG | 0.612759 | 8.3:+34190053 | MS.gene90774:intron |
| AGACATCCTCTGATGGTTGT+GGG | 0.614239 | 8.3:+34188429 | MS.gene90774:CDS |
| TTCAGGAATAGATAGAGTAA+TGG | 0.614320 | 8.3:+34201480 | MS.gene90774:CDS |
| AGGTTGGCTCAATAGAGGGA+AGG | 0.615075 | 8.3:+34190052 | MS.gene90774:intron |
| GGAATCAAATTAGGCACTGG+AGG | 0.620300 | 8.3:+34201764 | MS.gene90774:CDS |
| TTGTTGAGTATGCACTGGGT+TGG | 0.621738 | 8.3:-34188376 | None:intergenic |
| AGGAATAGATAGAGTAATGG+TGG | 0.624510 | 8.3:+34201483 | MS.gene90774:CDS |
| GCAGTTCCCACAACCATCAG+AGG | 0.624752 | 8.3:-34188435 | None:intergenic |
| TGTTGTTACCAGTACACCCA+AGG | 0.625135 | 8.3:+34186525 | MS.gene90774:CDS |
| GGAGTTGTTGAGTATGCACT+GGG | 0.626401 | 8.3:-34188380 | None:intergenic |
| GGGTAAAGATGACATATCCA+TGG | 0.627852 | 8.3:+34203180 | MS.gene90774:CDS |
| CATCTTGTCTGATATTTCAG+GGG | 0.629801 | 8.3:-34189466 | None:intergenic |
| ACATTGTATAACATCGATCA+GGG | 0.631495 | 8.3:-34188401 | None:intergenic |
| CTATGATTGGAGCAAAGGTG+CGG | 0.636918 | 8.3:+34193509 | MS.gene90774:CDS |
| AGGCACTGGAGGATTAGTCA+GGG | 0.639494 | 8.3:+34201775 | MS.gene90774:CDS |
| GGACAGTAAACAGAGACTCA+AGG | 0.644768 | 8.3:+34190350 | MS.gene90774:CDS |
| AGGAGCATCATGCATAGCAA+CGG | 0.647992 | 8.3:-34186779 | None:intergenic |
| CCAATTCTAGTGCAAGGCCA+AGG | 0.649312 | 8.3:+34197903 | MS.gene90774:CDS |
| ATATCTCATTACTTTCTCTG+TGG | 0.654168 | 8.3:-34190131 | None:intergenic |
| TGTAGTCAGCCCATACCTTG+TGG | 0.658844 | 8.3:+34190490 | MS.gene90774:CDS |
| GTCAGTGAGACATCCTCTGA+TGG | 0.664484 | 8.3:+34188422 | MS.gene90774:CDS |
| GTGACAAGCAGGCTAAGATG+TGG | 0.674018 | 8.3:+34186728 | MS.gene90774:CDS |
| GGATTAGTCAGGGCTTATGG+AGG | 0.675051 | 8.3:+34201785 | MS.gene90774:CDS |
| TGTTGGGAGATATCAAAGAA+CGG | 0.679052 | 8.3:+34186499 | MS.gene90774:CDS |
| TGATGGTGAACCTTCAGGTA+CGG | 0.683336 | 8.3:+34201426 | MS.gene90774:CDS |
| TATCCCAGGAAGTAGCGACA+AGG | 0.692122 | 8.3:-34186383 | None:intergenic |
| CTGGAAATAGAATCGGTGGG+TGG | 0.693399 | 8.3:-34186333 | None:intergenic |
| TGGTTCCATATATGCTTACG+CGG | 0.709671 | 8.3:+34190528 | MS.gene90774:CDS |
| AACTTGCCTTGTGAAAACAA+AGG | 0.713384 | 8.3:+34201838 | MS.gene90774:CDS |
| TGGTTGTGGGAACTGCCGAT+AGG | 0.714062 | 8.3:+34188442 | MS.gene90774:CDS |
| TCATTATTGAATGTACCACA+AGG | 0.728862 | 8.3:-34190505 | None:intergenic |
| AGACTGGAAATAGAATCGGT+GGG | 0.750574 | 8.3:-34186336 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 34186188 | 34203294 | 34186188 | ID=MS.gene90774 |
| chr8.3 | mRNA | 34186188 | 34203294 | 34186188 | ID=MS.gene90774.t1;Parent=MS.gene90774 |
| chr8.3 | exon | 34186188 | 34186241 | 34186188 | ID=MS.gene90774.t1.exon1;Parent=MS.gene90774.t1 |
| chr8.3 | CDS | 34186188 | 34186241 | 34186188 | ID=cds.MS.gene90774.t1;Parent=MS.gene90774.t1 |
| chr8.3 | exon | 34186324 | 34186410 | 34186324 | ID=MS.gene90774.t1.exon2;Parent=MS.gene90774.t1 |
| chr8.3 | CDS | 34186324 | 34186410 | 34186324 | ID=cds.MS.gene90774.t1;Parent=MS.gene90774.t1 |
| chr8.3 | exon | 34186493 | 34186570 | 34186493 | ID=MS.gene90774.t1.exon3;Parent=MS.gene90774.t1 |
| chr8.3 | CDS | 34186493 | 34186570 | 34186493 | ID=cds.MS.gene90774.t1;Parent=MS.gene90774.t1 |
| chr8.3 | exon | 34186676 | 34186869 | 34186676 | ID=MS.gene90774.t1.exon4;Parent=MS.gene90774.t1 |
| chr8.3 | CDS | 34186676 | 34186869 | 34186676 | ID=cds.MS.gene90774.t1;Parent=MS.gene90774.t1 |
| chr8.3 | exon | 34188356 | 34188497 | 34188356 | ID=MS.gene90774.t1.exon5;Parent=MS.gene90774.t1 |
| chr8.3 | CDS | 34188356 | 34188497 | 34188356 | ID=cds.MS.gene90774.t1;Parent=MS.gene90774.t1 |
| chr8.3 | exon | 34189442 | 34189522 | 34189442 | ID=MS.gene90774.t1.exon6;Parent=MS.gene90774.t1 |
| chr8.3 | CDS | 34189442 | 34189522 | 34189442 | ID=cds.MS.gene90774.t1;Parent=MS.gene90774.t1 |
| chr8.3 | exon | 34190054 | 34190182 | 34190054 | ID=MS.gene90774.t1.exon7;Parent=MS.gene90774.t1 |
| chr8.3 | CDS | 34190054 | 34190182 | 34190054 | ID=cds.MS.gene90774.t1;Parent=MS.gene90774.t1 |
| chr8.3 | exon | 34190294 | 34190371 | 34190294 | ID=MS.gene90774.t1.exon8;Parent=MS.gene90774.t1 |
| chr8.3 | CDS | 34190294 | 34190371 | 34190294 | ID=cds.MS.gene90774.t1;Parent=MS.gene90774.t1 |
| chr8.3 | exon | 34190478 | 34190549 | 34190478 | ID=MS.gene90774.t1.exon9;Parent=MS.gene90774.t1 |
| chr8.3 | CDS | 34190478 | 34190549 | 34190478 | ID=cds.MS.gene90774.t1;Parent=MS.gene90774.t1 |
| chr8.3 | exon | 34193504 | 34193584 | 34193504 | ID=MS.gene90774.t1.exon10;Parent=MS.gene90774.t1 |
| chr8.3 | CDS | 34193504 | 34193584 | 34193504 | ID=cds.MS.gene90774.t1;Parent=MS.gene90774.t1 |
| chr8.3 | exon | 34197434 | 34197474 | 34197434 | ID=MS.gene90774.t1.exon11;Parent=MS.gene90774.t1 |
| chr8.3 | CDS | 34197434 | 34197474 | 34197434 | ID=cds.MS.gene90774.t1;Parent=MS.gene90774.t1 |
| chr8.3 | exon | 34197857 | 34197941 | 34197857 | ID=MS.gene90774.t1.exon12;Parent=MS.gene90774.t1 |
| chr8.3 | CDS | 34197857 | 34197941 | 34197857 | ID=cds.MS.gene90774.t1;Parent=MS.gene90774.t1 |
| chr8.3 | exon | 34199322 | 34199363 | 34199322 | ID=MS.gene90774.t1.exon13;Parent=MS.gene90774.t1 |
| chr8.3 | CDS | 34199322 | 34199363 | 34199322 | ID=cds.MS.gene90774.t1;Parent=MS.gene90774.t1 |
| chr8.3 | exon | 34201400 | 34201515 | 34201400 | ID=MS.gene90774.t1.exon14;Parent=MS.gene90774.t1 |
| chr8.3 | CDS | 34201400 | 34201515 | 34201400 | ID=cds.MS.gene90774.t1;Parent=MS.gene90774.t1 |
| chr8.3 | exon | 34201754 | 34201859 | 34201754 | ID=MS.gene90774.t1.exon15;Parent=MS.gene90774.t1 |
| chr8.3 | CDS | 34201754 | 34201859 | 34201754 | ID=cds.MS.gene90774.t1;Parent=MS.gene90774.t1 |
| chr8.3 | exon | 34201995 | 34202048 | 34201995 | ID=MS.gene90774.t1.exon16;Parent=MS.gene90774.t1 |
| chr8.3 | CDS | 34201995 | 34202048 | 34201995 | ID=cds.MS.gene90774.t1;Parent=MS.gene90774.t1 |
| chr8.3 | exon | 34203136 | 34203294 | 34203136 | ID=MS.gene90774.t1.exon17;Parent=MS.gene90774.t1 |
| chr8.3 | CDS | 34203136 | 34203294 | 34203136 | ID=cds.MS.gene90774.t1;Parent=MS.gene90774.t1 |
| Gene Sequence |
| Protein sequence |
