Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32176.t1 | XP_013457098.1 | 97.8 | 325 | 7 | 0 | 1 | 325 | 1 | 325 | 3.50E-184 | 654.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32176.t1 | Q9C942 | 38.8 | 304 | 183 | 3 | 23 | 325 | 24 | 325 | 2.0e-55 | 217.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32176.t1 | I3S4R2 | 97.8 | 325 | 7 | 0 | 1 | 325 | 1 | 325 | 2.5e-184 | 654.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene32176 | 0.832652 | 8.36E-56 | -1.69E-46 |
| MS.gene049669 | MS.gene32176 | 0.815506 | 8.93E-52 | -1.69E-46 |
| MS.gene050026 | MS.gene32176 | 0.838288 | 3.14E-57 | -1.69E-46 |
| MS.gene050559 | MS.gene32176 | 0.815956 | 7.09E-52 | -1.69E-46 |
| MS.gene050561 | MS.gene32176 | 0.812943 | 3.29E-51 | -1.69E-46 |
| MS.gene050562 | MS.gene32176 | 0.809881 | 1.52E-50 | -1.69E-46 |
| MS.gene051744 | MS.gene32176 | 0.803865 | 2.84E-49 | -1.69E-46 |
| MS.gene052037 | MS.gene32176 | 0.802457 | 5.56E-49 | -1.69E-46 |
| MS.gene052333 | MS.gene32176 | 0.811919 | 5.50E-51 | -1.69E-46 |
| MS.gene052519 | MS.gene32176 | 0.803703 | 3.07E-49 | -1.69E-46 |
| MS.gene052582 | MS.gene32176 | 0.80835 | 3.23E-50 | -1.69E-46 |
| MS.gene052586 | MS.gene32176 | 0.833192 | 6.14E-56 | -1.69E-46 |
| MS.gene052685 | MS.gene32176 | 0.827302 | 1.69E-54 | -1.69E-46 |
| MS.gene053006 | MS.gene32176 | 0.824946 | 6.13E-54 | -1.69E-46 |
| MS.gene053963 | MS.gene32176 | 0.837719 | 4.40E-57 | -1.69E-46 |
| MS.gene05415 | MS.gene32176 | 0.81547 | 9.09E-52 | -1.69E-46 |
| MS.gene054236 | MS.gene32176 | 0.806404 | 8.36E-50 | -1.69E-46 |
| MS.gene054651 | MS.gene32176 | 0.818985 | 1.47E-52 | -1.69E-46 |
| MS.gene055586 | MS.gene32176 | 0.803387 | 3.57E-49 | -1.69E-46 |
| MS.gene056050 | MS.gene32176 | 0.80868 | 2.75E-50 | -1.69E-46 |
| MS.gene056174 | MS.gene32176 | 0.812735 | 3.65E-51 | -1.69E-46 |
| MS.gene056506 | MS.gene32176 | 0.812938 | 3.30E-51 | -1.69E-46 |
| MS.gene05686 | MS.gene32176 | 0.811219 | 7.81E-51 | -1.69E-46 |
| MS.gene058037 | MS.gene32176 | 0.820068 | 8.34E-53 | -1.69E-46 |
| MS.gene058979 | MS.gene32176 | 0.802537 | 5.35E-49 | -1.69E-46 |
| MS.gene059272 | MS.gene32176 | 0.800066 | 1.72E-48 | -1.69E-46 |
| MS.gene05952 | MS.gene32176 | 0.808411 | 3.14E-50 | -1.69E-46 |
| MS.gene05954 | MS.gene32176 | 0.800111 | 1.68E-48 | -1.69E-46 |
| MS.gene060412 | MS.gene32176 | 0.8167 | 4.83E-52 | -1.69E-46 |
| MS.gene060521 | MS.gene32176 | 0.825688 | 4.09E-54 | -1.69E-46 |
| MS.gene060634 | MS.gene32176 | -0.800045 | 1.73E-48 | -1.69E-46 |
| MS.gene060840 | MS.gene32176 | 0.810865 | 9.32E-51 | -1.69E-46 |
| MS.gene060879 | MS.gene32176 | 0.80619 | 9.28E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene90834 | MS.gene32176 | PPI |
| MS.gene32176 | MS.gene066454 | PPI |
| MS.gene029108 | MS.gene32176 | PPI |
| MS.gene75172 | MS.gene32176 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32176.t1 | MTR_4g089170 | 97.846 | 325 | 7 | 0 | 1 | 325 | 1 | 325 | 0.0 | 662 |
| MS.gene32176.t1 | MTR_1g088470 | 45.390 | 282 | 153 | 1 | 43 | 324 | 12 | 292 | 6.84e-84 | 256 |
| MS.gene32176.t1 | MTR_7g108770 | 44.444 | 279 | 153 | 1 | 43 | 321 | 12 | 288 | 3.48e-79 | 245 |
| MS.gene32176.t1 | MTR_1g115535 | 44.086 | 279 | 155 | 1 | 47 | 325 | 18 | 295 | 1.24e-78 | 243 |
| MS.gene32176.t1 | MTR_1g115535 | 44.086 | 279 | 155 | 1 | 47 | 325 | 22 | 299 | 1.42e-78 | 243 |
| MS.gene32176.t1 | MTR_4g127220 | 40.260 | 308 | 181 | 3 | 19 | 325 | 11 | 316 | 1.23e-77 | 240 |
| MS.gene32176.t1 | MTR_1g095110 | 42.623 | 305 | 156 | 8 | 25 | 320 | 18 | 312 | 1.27e-77 | 240 |
| MS.gene32176.t1 | MTR_6g025610 | 39.590 | 293 | 175 | 2 | 30 | 321 | 34 | 325 | 5.05e-77 | 239 |
| MS.gene32176.t1 | MTR_6g018490 | 40.727 | 275 | 162 | 1 | 47 | 321 | 62 | 335 | 1.63e-75 | 236 |
| MS.gene32176.t1 | MTR_7g007260 | 40.364 | 275 | 163 | 1 | 47 | 321 | 63 | 336 | 2.07e-74 | 233 |
| MS.gene32176.t1 | MTR_6g084420 | 39.427 | 279 | 167 | 2 | 44 | 321 | 59 | 336 | 1.55e-73 | 231 |
| MS.gene32176.t1 | MTR_1g110670 | 39.209 | 278 | 169 | 0 | 47 | 324 | 81 | 358 | 9.72e-70 | 221 |
| MS.gene32176.t1 | MTR_5g056550 | 38.129 | 278 | 172 | 0 | 47 | 324 | 115 | 392 | 3.07e-69 | 221 |
| MS.gene32176.t1 | MTR_7g007260 | 37.091 | 275 | 159 | 2 | 47 | 321 | 63 | 323 | 3.53e-63 | 203 |
| MS.gene32176.t1 | MTR_7g007260 | 36.957 | 276 | 159 | 3 | 47 | 321 | 63 | 324 | 1.09e-61 | 200 |
| MS.gene32176.t1 | MTR_5g056550 | 34.173 | 278 | 150 | 2 | 47 | 324 | 115 | 359 | 3.48e-55 | 184 |
| MS.gene32176.t1 | MTR_6g071475 | 36.972 | 284 | 165 | 9 | 43 | 323 | 118 | 390 | 5.44e-43 | 152 |
| MS.gene32176.t1 | MTR_3g109870 | 31.633 | 294 | 154 | 12 | 41 | 323 | 97 | 354 | 8.20e-30 | 117 |
| MS.gene32176.t1 | MTR_5g056550 | 35.606 | 132 | 85 | 0 | 47 | 178 | 115 | 246 | 5.27e-27 | 107 |
| MS.gene32176.t1 | MTR_5g056550 | 35.115 | 131 | 85 | 0 | 47 | 177 | 115 | 245 | 1.89e-26 | 105 |
| MS.gene32176.t1 | MTR_1g110680 | 41.791 | 67 | 39 | 0 | 257 | 323 | 38 | 104 | 2.13e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32176.t1 | AT1G11090 | 69.408 | 304 | 93 | 0 | 21 | 324 | 12 | 315 | 6.43e-162 | 454 |
| MS.gene32176.t1 | AT5G16120 | 43.706 | 286 | 159 | 2 | 37 | 321 | 53 | 337 | 1.40e-80 | 249 |
| MS.gene32176.t1 | AT5G16120 | 43.706 | 286 | 159 | 2 | 37 | 321 | 53 | 337 | 1.40e-80 | 249 |
| MS.gene32176.t1 | AT5G16120 | 43.706 | 286 | 159 | 2 | 37 | 321 | 71 | 355 | 2.49e-80 | 249 |
| MS.gene32176.t1 | AT3G62860 | 44.043 | 277 | 153 | 1 | 47 | 323 | 17 | 291 | 3.81e-80 | 248 |
| MS.gene32176.t1 | AT5G16120 | 43.706 | 286 | 159 | 2 | 37 | 321 | 85 | 369 | 4.28e-80 | 249 |
| MS.gene32176.t1 | AT2G47630 | 43.682 | 277 | 156 | 0 | 47 | 323 | 17 | 293 | 1.34e-79 | 246 |
| MS.gene32176.t1 | AT5G14980 | 40.064 | 312 | 182 | 4 | 15 | 325 | 10 | 317 | 4.92e-79 | 244 |
| MS.gene32176.t1 | AT2G39420 | 43.662 | 284 | 159 | 1 | 40 | 323 | 12 | 294 | 5.90e-79 | 243 |
| MS.gene32176.t1 | AT5G19290 | 39.414 | 307 | 178 | 3 | 23 | 325 | 16 | 318 | 5.93e-76 | 236 |
| MS.gene32176.t1 | AT3G55180 | 43.060 | 281 | 160 | 0 | 44 | 324 | 10 | 290 | 1.80e-75 | 234 |
| MS.gene32176.t1 | AT2G39410 | 42.958 | 284 | 161 | 1 | 40 | 323 | 12 | 294 | 2.34e-75 | 234 |
| MS.gene32176.t1 | AT2G39400 | 42.500 | 280 | 160 | 1 | 45 | 324 | 11 | 289 | 1.00e-73 | 230 |
| MS.gene32176.t1 | AT1G52760 | 38.889 | 306 | 184 | 3 | 21 | 325 | 22 | 325 | 1.06e-72 | 228 |
| MS.gene32176.t1 | AT3G55190 | 41.367 | 278 | 161 | 2 | 47 | 323 | 19 | 295 | 3.36e-70 | 221 |
| MS.gene32176.t1 | AT3G62860 | 44.726 | 237 | 131 | 0 | 87 | 323 | 12 | 248 | 1.13e-68 | 217 |
| MS.gene32176.t1 | AT2G47630 | 43.725 | 247 | 139 | 0 | 77 | 323 | 2 | 248 | 5.32e-67 | 213 |
| MS.gene32176.t1 | AT2G47630 | 45.148 | 237 | 130 | 0 | 87 | 323 | 32 | 268 | 1.62e-66 | 212 |
| MS.gene32176.t1 | AT1G77420 | 37.729 | 273 | 170 | 0 | 51 | 323 | 106 | 378 | 1.18e-60 | 198 |
| MS.gene32176.t1 | AT1G73480 | 39.446 | 289 | 157 | 9 | 41 | 324 | 188 | 463 | 4.06e-50 | 173 |
| MS.gene32176.t1 | AT1G18360 | 37.847 | 288 | 164 | 8 | 41 | 324 | 106 | 382 | 1.92e-48 | 167 |
| MS.gene32176.t1 | AT2G39400 | 38.679 | 212 | 129 | 1 | 45 | 256 | 11 | 221 | 6.29e-45 | 154 |
| MS.gene32176.t1 | AT5G11650 | 34.812 | 293 | 163 | 10 | 41 | 323 | 104 | 378 | 9.97e-41 | 147 |
| MS.gene32176.t1 | AT2G39410 | 38.384 | 99 | 60 | 1 | 40 | 138 | 12 | 109 | 2.40e-18 | 80.1 |
| MS.gene32176.t1 | AT5G11650 | 30.769 | 208 | 119 | 9 | 41 | 238 | 104 | 296 | 8.35e-17 | 80.1 |
Find 73 sgRNAs with CRISPR-Local
Find 88 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGAAGAGGGTTAGGTTTCT+TGG | 0.206429 | 4.4:+23052950 | None:intergenic |
| AAAGTTAAAATTTGAGGAAT+TGG | 0.255633 | 4.4:+23052530 | None:intergenic |
| TGTTTGTAGTATTCGGATTC+TGG | 0.263436 | 4.4:+23053010 | None:intergenic |
| CTACCATGCAACACAATAAA+AGG | 0.275261 | 4.4:+23052311 | None:intergenic |
| ATAGCACCTTGAAACCCTTT+TGG | 0.286890 | 4.4:+23052602 | None:intergenic |
| AAGAAGATTGAAGAAGCTTT+TGG | 0.317467 | 4.4:+23053059 | None:intergenic |
| GAGTGAAGATAAGAGTATTA+AGG | 0.332679 | 4.4:-23052234 | MS.gene32176:CDS |
| CCCATTTGAGCAAGGAAGAT+TGG | 0.341554 | 4.4:+23052830 | None:intergenic |
| TTTGTGTTGTTTGTAGTATT+CGG | 0.352130 | 4.4:+23053003 | None:intergenic |
| ATTTGAGGAATTGGCCATTT+GGG | 0.352270 | 4.4:+23052539 | None:intergenic |
| ATGAATCCTTTGAGGTATAG+AGG | 0.357188 | 4.4:-23052413 | MS.gene32176:CDS |
| TCCAATCTTCCTTGCTCAAA+TGG | 0.364325 | 4.4:-23052831 | MS.gene32176:CDS |
| TGTTTCTCTCTTGATCTTCA+AGG | 0.369035 | 4.4:-23052800 | MS.gene32176:CDS |
| AGAAAGATTCAAACTTTGTT+GGG | 0.380125 | 4.4:-23052691 | MS.gene32176:CDS |
| CTTCTTCATACCCTTACTAC+TGG | 0.381849 | 4.4:-23053042 | MS.gene32176:CDS |
| AGATCAGGTGTAGGAACAAT+AGG | 0.382799 | 4.4:+23052482 | None:intergenic |
| AAGAGTATTAAGGTGTTTGA+TGG | 0.389742 | 4.4:-23052224 | MS.gene32176:CDS |
| TATAGAGGGAAACCTAGGTT+AGG | 0.390724 | 4.4:-23052398 | MS.gene32176:CDS |
| ATGATCTTGTGAAGAGGGTT+AGG | 0.391175 | 4.4:+23052942 | None:intergenic |
| AGGGTTTCAAGGTGCTATTT+TGG | 0.399644 | 4.4:-23052597 | MS.gene32176:CDS |
| CCAATCTTCCTTGCTCAAAT+GGG | 0.405887 | 4.4:-23052830 | MS.gene32176:CDS |
| AATTTGAGGAATTGGCCATT+TGG | 0.411545 | 4.4:+23052538 | None:intergenic |
| TTGCTCAAATGAATCCTTTG+AGG | 0.411616 | 4.4:-23052421 | MS.gene32176:CDS |
| TTACTGATCCTGAGGTTAGT+AGG | 0.426605 | 4.4:-23052277 | MS.gene32176:CDS |
| GCTGATCCAAAAGGGTTTCA+AGG | 0.426607 | 4.4:-23052608 | MS.gene32176:CDS |
| ATGAGAATGTTGAAATTGTT+AGG | 0.429955 | 4.4:-23052169 | MS.gene32176:CDS |
| GGTGTGTAGCCCCAGTAGTA+AGG | 0.430506 | 4.4:+23053031 | None:intergenic |
| CAAGGAAGATTGGAGTGGAT+TGG | 0.435441 | 4.4:+23052840 | None:intergenic |
| CGTGGTGGAGTGGTAGGGTT+TGG | 0.436594 | 4.4:+23052914 | None:intergenic |
| AAGAAAGATTCAAACTTTGT+TGG | 0.440580 | 4.4:-23052692 | MS.gene32176:CDS |
| GGGAATTGTATGAAGAAGCT+AGG | 0.463498 | 4.4:-23052256 | MS.gene32176:CDS |
| GTAGGAACAATAGGCAAAGT+TGG | 0.473558 | 4.4:+23052491 | None:intergenic |
| CAAGGACATGGTCATTCTCA+AGG | 0.477582 | 4.4:-23052782 | MS.gene32176:CDS |
| CATGTGTAAAATCTCTGATA+AGG | 0.479554 | 4.4:-23052567 | MS.gene32176:CDS |
| TAGGTTTCTTGGTGTTGTGA+AGG | 0.494001 | 4.4:+23052961 | None:intergenic |
| AGAGCACGTGGTGGAGTGGT+AGG | 0.501387 | 4.4:+23052908 | None:intergenic |
| ACAGACTTATACAAAAGATC+AGG | 0.503183 | 4.4:+23052467 | None:intergenic |
| TACTGATCCTGAGGTTAGTA+GGG | 0.510507 | 4.4:-23052276 | MS.gene32176:CDS |
| TCTCTTGATCTTCAAGGACA+TGG | 0.518953 | 4.4:-23052794 | MS.gene32176:CDS |
| TTCTTCATACCCTTACTACT+GGG | 0.522282 | 4.4:-23053041 | MS.gene32176:CDS |
| CTGATAAGGTTAGACCCAAA+TGG | 0.529049 | 4.4:-23052553 | MS.gene32176:CDS |
| AGAGTATTAAGGTGTTTGAT+GGG | 0.547375 | 4.4:-23052223 | MS.gene32176:CDS |
| TTATTATCAATGGAAGAAGA+AGG | 0.549456 | 4.4:-23053094 | None:intergenic |
| ATCTTCATGATCCATGGCTA+TGG | 0.551295 | 4.4:-23052884 | MS.gene32176:CDS |
| TACAATTCCCTACTAACCTC+AGG | 0.553697 | 4.4:+23052269 | None:intergenic |
| GCTATGGCAACGACATCTCA+TGG | 0.554178 | 4.4:-23052868 | MS.gene32176:CDS |
| TAACCCTCTTCACAAGATCA+TGG | 0.557698 | 4.4:-23052940 | MS.gene32176:CDS |
| TGAATCCTTTGAGGTATAGA+GGG | 0.558623 | 4.4:-23052412 | MS.gene32176:CDS |
| TGTGAAAGTTGATCATAAGA+AGG | 0.559417 | 4.4:-23052447 | MS.gene32176:CDS |
| ATAGAGGGAAACCTAGGTTA+GGG | 0.564456 | 4.4:-23052397 | MS.gene32176:CDS |
| GCTCTCATCTTCATGATCCA+TGG | 0.570876 | 4.4:-23052890 | MS.gene32176:CDS |
| GTGTGTAGCCCCAGTAGTAA+GGG | 0.574049 | 4.4:+23053032 | None:intergenic |
| AAGCCATGATCTTGTGAAGA+GGG | 0.575206 | 4.4:+23052937 | None:intergenic |
| GGTTTCCCTCTATACCTCAA+AGG | 0.583565 | 4.4:+23052407 | None:intergenic |
| AGATGTCGTTGCCATAGCCA+TGG | 0.594829 | 4.4:+23052873 | None:intergenic |
| GAAGATTGGAGTGGATTGGA+AGG | 0.598909 | 4.4:+23052844 | None:intergenic |
| GAGCACGTGGTGGAGTGGTA+GGG | 0.602375 | 4.4:+23052909 | None:intergenic |
| TTGAGCAAGGAAGATTGGAG+TGG | 0.603705 | 4.4:+23052835 | None:intergenic |
| TGAGGTATAGAGGGAAACCT+AGG | 0.603962 | 4.4:-23052403 | MS.gene32176:CDS |
| TGATGTTGTTACTGATCCTG+AGG | 0.606341 | 4.4:-23052285 | MS.gene32176:CDS |
| GAAGCCATGATCTTGTGAAG+AGG | 0.612962 | 4.4:+23052936 | None:intergenic |
| GAAACCTAGGTTAGGGACTG+TGG | 0.619142 | 4.4:-23052390 | MS.gene32176:CDS |
| AAGCGAAACCCATTTGAGCA+AGG | 0.634300 | 4.4:+23052822 | None:intergenic |
| TGTACAACAAGGTCAACGCT+AGG | 0.645731 | 4.4:+23052743 | None:intergenic |
| TTATATGGTGAATCAATGGG+TGG | 0.653291 | 4.4:-23052656 | MS.gene32176:CDS |
| GATGAGAGCACGTGGTGGAG+TGG | 0.655445 | 4.4:+23052904 | None:intergenic |
| TTATACAAAAGATCAGGTGT+AGG | 0.656762 | 4.4:+23052473 | None:intergenic |
| ACCTAGGTTAGGGACTGTGG+TGG | 0.660831 | 4.4:-23052387 | MS.gene32176:CDS |
| TCTTCATACCCTTACTACTG+GGG | 0.662115 | 4.4:-23053040 | MS.gene32176:CDS |
| ATGAAGATGAGAGCACGTGG+TGG | 0.668357 | 4.4:+23052899 | None:intergenic |
| TCCACCACAGTCCCTAACCT+AGG | 0.684411 | 4.4:+23052386 | None:intergenic |
| AGAGACAATCTTGTACAACA+AGG | 0.707656 | 4.4:+23052732 | None:intergenic |
| ATCATGAAGATGAGAGCACG+TGG | 0.766597 | 4.4:+23052896 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGTTAAAATTTGAGGAAT+TGG | + | chr4.4:23052688-23052707 | None:intergenic | 20.0% |
| !! | GCTAAAAAAGTTAAAATTTG+AGG | + | chr4.4:23052694-23052713 | None:intergenic | 20.0% |
| !!! | TTTTTATATGGTGAATCAAT+GGG | - | chr4.4:23052556-23052575 | MS.gene32176:CDS | 20.0% |
| !!! | TTTTTTATATGGTGAATCAA+TGG | - | chr4.4:23052555-23052574 | MS.gene32176:CDS | 20.0% |
| ! | AAGAAAGATTCAAACTTTGT+TGG | - | chr4.4:23052523-23052542 | MS.gene32176:CDS | 25.0% |
| ! | AGAAAGATTCAAACTTTGTT+GGG | - | chr4.4:23052524-23052543 | MS.gene32176:CDS | 25.0% |
| ! | ATGAGAATGTTGAAATTGTT+AGG | - | chr4.4:23053046-23053065 | MS.gene32176:CDS | 25.0% |
| ! | GATTCACCATATAAAAAACA+AGG | + | chr4.4:23052553-23052572 | None:intergenic | 25.0% |
| !! | TTATCAGAGATTTTACACAT+GGG | + | chr4.4:23052649-23052668 | None:intergenic | 25.0% |
| !!! | TTTGTGTTGTTTGTAGTATT+CGG | + | chr4.4:23052215-23052234 | None:intergenic | 25.0% |
| ACAGACTTATACAAAAGATC+AGG | + | chr4.4:23052751-23052770 | None:intergenic | 30.0% | |
| CATGTGTAAAATCTCTGATA+AGG | - | chr4.4:23052648-23052667 | MS.gene32176:CDS | 30.0% | |
| TTATACAAAAGATCAGGTGT+AGG | + | chr4.4:23052745-23052764 | None:intergenic | 30.0% | |
| ! | AAGAAGATTGAAGAAGCTTT+TGG | + | chr4.4:23052159-23052178 | None:intergenic | 30.0% |
| ! | AGAGTATTAAGGTGTTTGAT+GGG | - | chr4.4:23052992-23053011 | MS.gene32176:CDS | 30.0% |
| ! | ATTCATTTTGCTGATCCAAA+AGG | - | chr4.4:23052598-23052617 | MS.gene32176:CDS | 30.0% |
| ! | CTTATCAGAGATTTTACACA+TGG | + | chr4.4:23052650-23052669 | None:intergenic | 30.0% |
| ! | TGTGAAAGTTGATCATAAGA+AGG | - | chr4.4:23052768-23052787 | MS.gene32176:CDS | 30.0% |
| ! | TTAGGAATGATATTTTGCAG+TGG | - | chr4.4:23053064-23053083 | MS.gene32176:CDS | 30.0% |
| ! | TTCATTTTGCTGATCCAAAA+GGG | - | chr4.4:23052599-23052618 | MS.gene32176:CDS | 30.0% |
| !! | AAGAGTATTAAGGTGTTTGA+TGG | - | chr4.4:23052991-23053010 | MS.gene32176:CDS | 30.0% |
| !! | ATGATGCATTCTTTGCTTTT+TGG | - | chr4.4:23053015-23053034 | MS.gene32176:CDS | 30.0% |
| !! | GAGTGAAGATAAGAGTATTA+AGG | - | chr4.4:23052981-23053000 | MS.gene32176:CDS | 30.0% |
| AATTTGAGGAATTGGCCATT+TGG | + | chr4.4:23052680-23052699 | None:intergenic | 35.0% | |
| AGAGACAATCTTGTACAACA+AGG | + | chr4.4:23052486-23052505 | None:intergenic | 35.0% | |
| ATTTGAGGAATTGGCCATTT+GGG | + | chr4.4:23052679-23052698 | None:intergenic | 35.0% | |
| CTACCATGCAACACAATAAA+AGG | + | chr4.4:23052907-23052926 | None:intergenic | 35.0% | |
| TGTTTCTCTCTTGATCTTCA+AGG | - | chr4.4:23052415-23052434 | MS.gene32176:CDS | 35.0% | |
| TGTTTGTAGTATTCGGATTC+TGG | + | chr4.4:23052208-23052227 | None:intergenic | 35.0% | |
| TTATATGGTGAATCAATGGG+TGG | - | chr4.4:23052559-23052578 | MS.gene32176:CDS | 35.0% | |
| TTCTTCATACCCTTACTACT+GGG | - | chr4.4:23052174-23052193 | MS.gene32176:CDS | 35.0% | |
| TTGCTCAAATGAATCCTTTG+AGG | - | chr4.4:23052794-23052813 | MS.gene32176:CDS | 35.0% | |
| ! | CTTCCTTTTATTGTGTTGCA+TGG | - | chr4.4:23052901-23052920 | MS.gene32176:CDS | 35.0% |
| !! | ATGAATCCTTTGAGGTATAG+AGG | - | chr4.4:23052802-23052821 | MS.gene32176:CDS | 35.0% |
| !! | GGGTTACTGATATTTTGAGT+AGG | - | chr4.4:23052860-23052879 | MS.gene32176:CDS | 35.0% |
| !! | TGAATCCTTTGAGGTATAGA+GGG | - | chr4.4:23052803-23052822 | MS.gene32176:CDS | 35.0% |
| !! | TGTTGTGAAGGTTGATTTTG+TGG | + | chr4.4:23052245-23052264 | None:intergenic | 35.0% |
| !!! | GGGTTGCCTTGTTTTTTATA+TGG | - | chr4.4:23052544-23052563 | MS.gene32176:CDS | 35.0% |
| AAGCCATGATCTTGTGAAGA+GGG | + | chr4.4:23052281-23052300 | None:intergenic | 40.0% | |
| AGATCAGGTGTAGGAACAAT+AGG | + | chr4.4:23052736-23052755 | None:intergenic | 40.0% | |
| ATAGAGGGAAACCTAGGTTA+GGG | - | chr4.4:23052818-23052837 | MS.gene32176:CDS | 40.0% | |
| ATCTTCATGATCCATGGCTA+TGG | - | chr4.4:23052331-23052350 | MS.gene32176:CDS | 40.0% | |
| ATGATCTTGTGAAGAGGGTT+AGG | + | chr4.4:23052276-23052295 | None:intergenic | 40.0% | |
| CCAATCTTCCTTGCTCAAAT+GGG | - | chr4.4:23052385-23052404 | MS.gene32176:CDS | 40.0% | |
| CTGATAAGGTTAGACCCAAA+TGG | - | chr4.4:23052662-23052681 | MS.gene32176:CDS | 40.0% | |
| CTTCTTCATACCCTTACTAC+TGG | - | chr4.4:23052173-23052192 | MS.gene32176:CDS | 40.0% | |
| GGGAATTGTATGAAGAAGCT+AGG | - | chr4.4:23052959-23052978 | MS.gene32176:CDS | 40.0% | |
| GTAGGAACAATAGGCAAAGT+TGG | + | chr4.4:23052727-23052746 | None:intergenic | 40.0% | |
| TAACCCTCTTCACAAGATCA+TGG | - | chr4.4:23052275-23052294 | MS.gene32176:CDS | 40.0% | |
| TACAATTCCCTACTAACCTC+AGG | + | chr4.4:23052949-23052968 | None:intergenic | 40.0% | |
| TACTGATCCTGAGGTTAGTA+GGG | - | chr4.4:23052939-23052958 | MS.gene32176:CDS | 40.0% | |
| TATAGAGGGAAACCTAGGTT+AGG | - | chr4.4:23052817-23052836 | MS.gene32176:CDS | 40.0% | |
| TCCAATCTTCCTTGCTCAAA+TGG | - | chr4.4:23052384-23052403 | MS.gene32176:CDS | 40.0% | |
| TCTCTTGATCTTCAAGGACA+TGG | - | chr4.4:23052421-23052440 | MS.gene32176:CDS | 40.0% | |
| TCTTCATACCCTTACTACTG+GGG | - | chr4.4:23052175-23052194 | MS.gene32176:CDS | 40.0% | |
| TGATGTTGTTACTGATCCTG+AGG | - | chr4.4:23052930-23052949 | MS.gene32176:CDS | 40.0% | |
| TTACTGATCCTGAGGTTAGT+AGG | - | chr4.4:23052938-23052957 | MS.gene32176:CDS | 40.0% | |
| ! | ATAGCACCTTGAAACCCTTT+TGG | + | chr4.4:23052616-23052635 | None:intergenic | 40.0% |
| !! | TAGGTTTCTTGGTGTTGTGA+AGG | + | chr4.4:23052257-23052276 | None:intergenic | 40.0% |
| !!! | AGGGTTTCAAGGTGCTATTT+TGG | - | chr4.4:23052618-23052637 | MS.gene32176:CDS | 40.0% |
| AAGCGAAACCCATTTGAGCA+AGG | + | chr4.4:23052396-23052415 | None:intergenic | 45.0% | |
| CAAGGAAGATTGGAGTGGAT+TGG | + | chr4.4:23052378-23052397 | None:intergenic | 45.0% | |
| CAAGGACATGGTCATTCTCA+AGG | - | chr4.4:23052433-23052452 | MS.gene32176:CDS | 45.0% | |
| CCCATTTGAGCAAGGAAGAT+TGG | + | chr4.4:23052388-23052407 | None:intergenic | 45.0% | |
| GAAGCCATGATCTTGTGAAG+AGG | + | chr4.4:23052282-23052301 | None:intergenic | 45.0% | |
| GCTCTCATCTTCATGATCCA+TGG | - | chr4.4:23052325-23052344 | MS.gene32176:CDS | 45.0% | |
| GCTGATCCAAAAGGGTTTCA+AGG | - | chr4.4:23052607-23052626 | MS.gene32176:CDS | 45.0% | |
| GGTTTCCCTCTATACCTCAA+AGG | + | chr4.4:23052811-23052830 | None:intergenic | 45.0% | |
| GTGAAGAGGGTTAGGTTTCT+TGG | + | chr4.4:23052268-23052287 | None:intergenic | 45.0% | |
| TGAGGTATAGAGGGAAACCT+AGG | - | chr4.4:23052812-23052831 | MS.gene32176:CDS | 45.0% | |
| TGTACAACAAGGTCAACGCT+AGG | + | chr4.4:23052475-23052494 | None:intergenic | 45.0% | |
| TTGAGCAAGGAAGATTGGAG+TGG | + | chr4.4:23052383-23052402 | None:intergenic | 45.0% | |
| ! | ATCATGAAGATGAGAGCACG+TGG | + | chr4.4:23052322-23052341 | None:intergenic | 45.0% |
| !! | GAAGATTGGAGTGGATTGGA+AGG | + | chr4.4:23052374-23052393 | None:intergenic | 45.0% |
| AGATGTCGTTGCCATAGCCA+TGG | + | chr4.4:23052345-23052364 | None:intergenic | 50.0% | |
| GAAACCTAGGTTAGGGACTG+TGG | - | chr4.4:23052825-23052844 | MS.gene32176:CDS | 50.0% | |
| GCTATGGCAACGACATCTCA+TGG | - | chr4.4:23052347-23052366 | MS.gene32176:CDS | 50.0% | |
| GTGTGTAGCCCCAGTAGTAA+GGG | + | chr4.4:23052186-23052205 | None:intergenic | 50.0% | |
| ! | ATGAAGATGAGAGCACGTGG+TGG | + | chr4.4:23052319-23052338 | None:intergenic | 50.0% |
| !! | GACTGTGGTGGAGCTTTTGA+GGG | - | chr4.4:23052840-23052859 | MS.gene32176:CDS | 50.0% |
| ACCTAGGTTAGGGACTGTGG+TGG | - | chr4.4:23052828-23052847 | MS.gene32176:CDS | 55.0% | |
| GGTGTGTAGCCCCAGTAGTA+AGG | + | chr4.4:23052187-23052206 | None:intergenic | 55.0% | |
| TCCACCACAGTCCCTAACCT+AGG | + | chr4.4:23052832-23052851 | None:intergenic | 55.0% | |
| !! | GGACTGTGGTGGAGCTTTTG+AGG | - | chr4.4:23052839-23052858 | MS.gene32176:CDS | 55.0% |
| ! | AGAGCACGTGGTGGAGTGGT+AGG | + | chr4.4:23052310-23052329 | None:intergenic | 60.0% |
| ! | CGTGGTGGAGTGGTAGGGTT+TGG | + | chr4.4:23052304-23052323 | None:intergenic | 60.0% |
| ! | GAGCACGTGGTGGAGTGGTA+GGG | + | chr4.4:23052309-23052328 | None:intergenic | 60.0% |
| ! | GATGAGAGCACGTGGTGGAG+TGG | + | chr4.4:23052314-23052333 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 23052130 | 23053107 | 23052130 | ID=MS.gene32176 |
| chr4.4 | mRNA | 23052130 | 23053107 | 23052130 | ID=MS.gene32176.t1;Parent=MS.gene32176 |
| chr4.4 | exon | 23052130 | 23053107 | 23052130 | ID=MS.gene32176.t1.exon1;Parent=MS.gene32176.t1 |
| chr4.4 | CDS | 23052130 | 23053107 | 23052130 | ID=cds.MS.gene32176.t1;Parent=MS.gene32176.t1 |
| Gene Sequence |
| Protein sequence |
