AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene39411

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene39411.t1 MTR_4g089170 98.462 325 5 0 1 325 1 325 0.0 665
MS.gene39411.t1 MTR_1g088470 45.745 282 152 1 43 324 12 292 2.24e-84 258
MS.gene39411.t1 MTR_7g108770 44.803 279 152 1 43 321 12 288 1.70e-79 246
MS.gene39411.t1 MTR_1g115535 44.444 279 154 1 47 325 22 299 6.58e-79 243
MS.gene39411.t1 MTR_1g115535 44.444 279 154 1 47 325 18 295 6.92e-79 243
MS.gene39411.t1 MTR_1g095110 42.951 305 155 8 25 320 18 312 7.07e-78 241
MS.gene39411.t1 MTR_4g127220 40.584 308 180 3 19 325 11 316 8.03e-78 241
MS.gene39411.t1 MTR_6g025610 39.590 293 175 2 30 321 34 325 4.73e-77 239
MS.gene39411.t1 MTR_6g018490 40.727 275 162 1 47 321 62 335 1.48e-75 236
MS.gene39411.t1 MTR_7g007260 40.364 275 163 1 47 321 63 336 2.30e-74 233
MS.gene39411.t1 MTR_6g084420 39.427 279 167 2 44 321 59 336 2.51e-73 230
MS.gene39411.t1 MTR_1g110670 38.754 289 177 0 36 324 70 358 6.05e-70 222
MS.gene39411.t1 MTR_5g056550 38.489 278 171 0 47 324 115 392 1.70e-69 222
MS.gene39411.t1 MTR_7g007260 37.091 275 159 2 47 321 63 323 3.45e-63 203
MS.gene39411.t1 MTR_7g007260 36.957 276 159 3 47 321 63 324 1.45e-61 199
MS.gene39411.t1 MTR_5g056550 34.532 278 149 2 47 324 115 359 1.83e-55 184
MS.gene39411.t1 MTR_6g071475 36.620 284 166 9 43 323 118 390 1.34e-42 151
MS.gene39411.t1 MTR_3g109870 31.293 294 155 12 41 323 97 354 3.18e-29 115
MS.gene39411.t1 MTR_5g056550 35.606 132 85 0 47 178 115 246 5.66e-27 107
MS.gene39411.t1 MTR_5g056550 35.115 131 85 0 47 177 115 245 1.93e-26 105
MS.gene39411.t1 MTR_1g110680 43.284 67 38 0 257 323 38 104 9.76e-12 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene39411.t1 AT1G11090 69.737 304 92 0 21 324 12 315 4.84e-162 455
MS.gene39411.t1 AT5G16120 43.706 286 159 2 37 321 53 337 1.96e-80 248
MS.gene39411.t1 AT5G16120 43.706 286 159 2 37 321 53 337 1.96e-80 248
MS.gene39411.t1 AT3G62860 44.404 277 152 1 47 323 17 291 2.08e-80 248
MS.gene39411.t1 AT5G16120 43.706 286 159 2 37 321 71 355 3.56e-80 248
MS.gene39411.t1 AT5G16120 43.706 286 159 2 37 321 85 369 3.72e-80 249
MS.gene39411.t1 AT2G47630 44.043 277 155 0 47 323 17 293 7.16e-80 247
MS.gene39411.t1 AT2G39420 44.014 284 158 1 40 323 12 294 1.89e-79 245
MS.gene39411.t1 AT5G14980 40.385 312 181 4 15 325 10 317 2.31e-79 245
MS.gene39411.t1 AT3G55180 43.416 281 159 0 44 324 10 290 5.72e-76 236
MS.gene39411.t1 AT5G19290 39.414 307 178 3 23 325 16 318 5.99e-76 236
MS.gene39411.t1 AT2G39410 43.310 284 160 1 40 323 12 294 8.54e-76 235
MS.gene39411.t1 AT2G39400 42.857 280 159 1 45 324 11 289 2.91e-74 231
MS.gene39411.t1 AT1G52760 39.216 306 183 3 21 325 22 325 3.91e-73 229
MS.gene39411.t1 AT3G55190 41.727 278 160 2 47 323 19 295 5.84e-71 223
MS.gene39411.t1 AT3G62860 45.148 237 130 0 87 323 12 248 6.44e-69 218
MS.gene39411.t1 AT2G47630 44.130 247 138 0 77 323 2 248 3.13e-67 213
MS.gene39411.t1 AT2G47630 45.570 237 129 0 87 323 32 268 9.84e-67 213
MS.gene39411.t1 AT1G77420 38.095 273 169 0 51 323 106 378 1.33e-60 198
MS.gene39411.t1 AT1G73480 39.100 289 158 9 41 324 188 463 9.70e-50 172
MS.gene39411.t1 AT1G18360 37.500 288 165 8 41 324 106 382 5.76e-48 166
MS.gene39411.t1 AT2G39400 38.679 212 129 1 45 256 11 221 6.29e-45 154
MS.gene39411.t1 AT5G11650 34.812 293 163 10 41 323 104 378 1.81e-40 146
MS.gene39411.t1 AT2G39410 38.384 99 60 1 40 138 12 109 2.26e-18 80.1
MS.gene39411.t1 AT5G11650 30.769 208 119 9 41 238 104 296 8.85e-17 79.7

Find 74 sgRNAs with CRISPR-Local

Find 88 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTTGTAGTATTCAGATTC+TGG 0.125806 4.2:+21715760 None:intergenic
GTGAAGAGGGTTAGGTTTCT+TGG 0.206429 4.2:+21715700 None:intergenic
AAAGTTAAAATTTGAGGAAT+TGG 0.255633 4.2:+21715280 None:intergenic
CTACCATGCAACACAATAAA+AGG 0.284140 4.2:+21715061 None:intergenic
ATAGCACCTTGAAACCCTTT+TGG 0.286890 4.2:+21715352 None:intergenic
AAGAAGATTGAAGAAGCTTT+TGG 0.317467 4.2:+21715809 None:intergenic
CGTGGTGGGGTGGTAGGGTT+TGG 0.335829 4.2:+21715664 None:intergenic
CCCATTTGAGCAAGGAAGAT+TGG 0.341554 4.2:+21715580 None:intergenic
ATTTGAGGAATTGGCCATTT+GGG 0.352270 4.2:+21715289 None:intergenic
ATGAATCCTTTGAGGTATAG+AGG 0.357188 4.2:-21715163 MS.gene39411:CDS
GAGTGATGATAAGACTATTA+AGG 0.359998 4.2:-21714984 MS.gene39411:CDS
TCCAATCTTCCTTGCTCAAA+TGG 0.364325 4.2:-21715581 MS.gene39411:CDS
TGTTTCTCTCTTGATCTTCA+AGG 0.369035 4.2:-21715550 MS.gene39411:CDS
CTTCTTCATACCCTTACTAC+TGG 0.381849 4.2:-21715792 MS.gene39411:CDS
AGATCAGGTGTAGGAACAAT+AGG 0.382799 4.2:+21715232 None:intergenic
AAGACTATTAAGGTGTTTGA+TGG 0.389742 4.2:-21714974 MS.gene39411:CDS
TATAGAGGGAAACCTAGGTT+AGG 0.390724 4.2:-21715148 MS.gene39411:CDS
ATGATCTTGTGAAGAGGGTT+AGG 0.391175 4.2:+21715692 None:intergenic
AGGGTTTCAAGGTGCTATTT+TGG 0.399644 4.2:-21715347 MS.gene39411:CDS
CCAATCTTCCTTGCTCAAAT+GGG 0.405887 4.2:-21715580 MS.gene39411:CDS
GTTTGTAGTATTCAGATTCT+GGG 0.409432 4.2:+21715761 None:intergenic
AATTTGAGGAATTGGCCATT+TGG 0.411545 4.2:+21715288 None:intergenic
TTGCTCAAATGAATCCTTTG+AGG 0.411616 4.2:-21715171 MS.gene39411:CDS
AAGAAAGATTCAAACTTTGT+TGG 0.421169 4.2:-21715442 MS.gene39411:CDS
AGAGCACGTGGTGGGGTGGT+AGG 0.424495 4.2:+21715658 None:intergenic
TTACTGATCCTGAGGTTAGT+AGG 0.426605 4.2:-21715027 MS.gene39411:CDS
GCTGATCCAAAAGGGTTTCA+AGG 0.426607 4.2:-21715358 MS.gene39411:CDS
GGGGTGTAGCCCCAGTAGTA+AGG 0.428895 4.2:+21715781 None:intergenic
ATGAGAATGTTGAAATTGTT+AGG 0.429955 4.2:-21714919 MS.gene39411:CDS
GGGAATTGTATGAAGAAGCT+AGG 0.463498 4.2:-21715006 MS.gene39411:CDS
TATGTGTAAAATCTCTGATA+AGG 0.464943 4.2:-21715317 MS.gene39411:CDS
CAAGGAAGATTGGAGTGGAT+TGG 0.465945 4.2:+21715590 None:intergenic
GTAGGAACAATAGGCAAAGT+TGG 0.473558 4.2:+21715241 None:intergenic
CAAGGACATGGTCATTCTCA+AGG 0.477582 4.2:-21715532 MS.gene39411:CDS
GAGCACGTGGTGGGGTGGTA+GGG 0.481270 4.2:+21715659 None:intergenic
TAGGTTTCTTGGTGTTGTGA+AGG 0.494001 4.2:+21715711 None:intergenic
ACAGACTTATACAAAAGATC+AGG 0.503183 4.2:+21715217 None:intergenic
TACTGATCCTGAGGTTAGTA+GGG 0.510507 4.2:-21715026 MS.gene39411:CDS
TCTCTTGATCTTCAAGGACA+TGG 0.518953 4.2:-21715544 MS.gene39411:CDS
TTCTTCATACCCTTACTACT+GGG 0.522282 4.2:-21715791 MS.gene39411:CDS
CTGATAAGGTTAGACCCAAA+TGG 0.529049 4.2:-21715303 MS.gene39411:CDS
AGACTATTAAGGTGTTTGAT+GGG 0.547375 4.2:-21714973 MS.gene39411:CDS
TTATTATCAATGGAAGAAGA+AGG 0.549456 4.2:-21715844 None:intergenic
ATCTTCATGATCCATGGCTA+TGG 0.551295 4.2:-21715634 MS.gene39411:CDS
GCTATGGCAACGACATCTCA+TGG 0.552006 4.2:-21715618 MS.gene39411:CDS
TACAATTCCCTACTAACCTC+AGG 0.553697 4.2:+21715019 None:intergenic
TAACCCTCTTCACAAGATCA+TGG 0.557698 4.2:-21715690 MS.gene39411:CDS
TGAATCCTTTGAGGTATAGA+GGG 0.558623 4.2:-21715162 MS.gene39411:CDS
TGTGAAAGTTGATCATAAGA+AGG 0.559417 4.2:-21715197 MS.gene39411:CDS
ATAGAGGGAAACCTAGGTTA+GGG 0.564456 4.2:-21715147 MS.gene39411:CDS
GCTCTCATCTTCATGATCCA+TGG 0.570876 4.2:-21715640 MS.gene39411:CDS
AAGCCATGATCTTGTGAAGA+GGG 0.575206 4.2:+21715687 None:intergenic
GGGTGTAGCCCCAGTAGTAA+GGG 0.576488 4.2:+21715782 None:intergenic
TTTGTAGTATTCAGATTCTG+GGG 0.581983 4.2:+21715762 None:intergenic
GGTTTCCCTCTATACCTCAA+AGG 0.583565 4.2:+21715157 None:intergenic
AGATGTCGTTGCCATAGCCA+TGG 0.594829 4.2:+21715623 None:intergenic
TTGAGCAAGGAAGATTGGAG+TGG 0.603705 4.2:+21715585 None:intergenic
TGAGGTATAGAGGGAAACCT+AGG 0.603962 4.2:-21715153 MS.gene39411:CDS
TGATGTTGTTACTGATCCTG+AGG 0.606341 4.2:-21715035 MS.gene39411:CDS
GAAGCCATGATCTTGTGAAG+AGG 0.612962 4.2:+21715686 None:intergenic
TGAAGATGAGAGCACGTGGT+GGG 0.613453 4.2:+21715650 None:intergenic
GAAACCTAGGTTAGGGACTG+TGG 0.619142 4.2:-21715140 MS.gene39411:CDS
AAGCGAAACCCATTTGAGCA+AGG 0.634300 4.2:+21715572 None:intergenic
TGTACAACAAGGTCAACGCT+AGG 0.645731 4.2:+21715493 None:intergenic
TTATATGGTGAATCAATGGG+TGG 0.653291 4.2:-21715406 MS.gene39411:CDS
GATGAGAGCACGTGGTGGGG+TGG 0.655445 4.2:+21715654 None:intergenic
TTATACAAAAGATCAGGTGT+AGG 0.656762 4.2:+21715223 None:intergenic
ACCTAGGTTAGGGACTGTGG+TGG 0.660831 4.2:-21715137 MS.gene39411:CDS
TCTTCATACCCTTACTACTG+GGG 0.662115 4.2:-21715790 MS.gene39411:CDS
GAAGATGAGAGCACGTGGTG+GGG 0.666350 4.2:+21715651 None:intergenic
ATGAAGATGAGAGCACGTGG+TGG 0.684343 4.2:+21715649 None:intergenic
TCCACCACAGTCCCTAACCT+AGG 0.684411 4.2:+21715136 None:intergenic
AGAGACAATCTTGTACAACA+AGG 0.707656 4.2:+21715482 None:intergenic
ATCATGAAGATGAGAGCACG+TGG 0.766597 4.2:+21715646 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAGTTAAAATTTGAGGAAT+TGG + chr4.2:21715438-21715457 None:intergenic 20.0%
!! GCTAAAAAAGTTAAAATTTG+AGG + chr4.2:21715444-21715463 None:intergenic 20.0%
!!! TTTTTATATGGTGAATCAAT+GGG - chr4.2:21715306-21715325 MS.gene39411:CDS 20.0%
!!! TTTTTTATATGGTGAATCAA+TGG - chr4.2:21715305-21715324 MS.gene39411:CDS 20.0%
! AAGAAAGATTCAAACTTTGT+TGG - chr4.2:21715273-21715292 MS.gene39411:CDS 25.0%
! ATGAGAATGTTGAAATTGTT+AGG - chr4.2:21715796-21715815 MS.gene39411:CDS 25.0%
! GATTCACCATATAAAAAACA+AGG + chr4.2:21715303-21715322 None:intergenic 25.0%
! TATGTGTAAAATCTCTGATA+AGG - chr4.2:21715398-21715417 MS.gene39411:CDS 25.0%
!! TTATCAGAGATTTTACACAT+AGG + chr4.2:21715399-21715418 None:intergenic 25.0%
ACAGACTTATACAAAAGATC+AGG + chr4.2:21715501-21715520 None:intergenic 30.0%
GAGTGATGATAAGACTATTA+AGG - chr4.2:21715731-21715750 MS.gene39411:CDS 30.0%
GTTTGTAGTATTCAGATTCT+GGG + chr4.2:21714957-21714976 None:intergenic 30.0%
TGTTTGTAGTATTCAGATTC+TGG + chr4.2:21714958-21714977 None:intergenic 30.0%
TTATACAAAAGATCAGGTGT+AGG + chr4.2:21715495-21715514 None:intergenic 30.0%
TTTGTAGTATTCAGATTCTG+GGG + chr4.2:21714956-21714975 None:intergenic 30.0%
! AAGAAGATTGAAGAAGCTTT+TGG + chr4.2:21714909-21714928 None:intergenic 30.0%
! AAGACTATTAAGGTGTTTGA+TGG - chr4.2:21715741-21715760 MS.gene39411:CDS 30.0%
! AGACTATTAAGGTGTTTGAT+GGG - chr4.2:21715742-21715761 MS.gene39411:CDS 30.0%
! ATTCATTTTGCTGATCCAAA+AGG - chr4.2:21715348-21715367 MS.gene39411:CDS 30.0%
! TGTGAAAGTTGATCATAAGA+AGG - chr4.2:21715518-21715537 MS.gene39411:CDS 30.0%
! TTAGGAATGATATTTTGCAG+TGG - chr4.2:21715814-21715833 MS.gene39411:CDS 30.0%
! TTCATTTTGCTGATCCAAAA+GGG - chr4.2:21715349-21715368 MS.gene39411:CDS 30.0%
!! ATGATGCATTCTTTGCTTTT+TGG - chr4.2:21715765-21715784 MS.gene39411:CDS 30.0%
!!! GGATTGCCTTGTTTTTTATA+TGG - chr4.2:21715294-21715313 MS.gene39411:CDS 30.0%
AATTTGAGGAATTGGCCATT+TGG + chr4.2:21715430-21715449 None:intergenic 35.0%
AGAGACAATCTTGTACAACA+AGG + chr4.2:21715236-21715255 None:intergenic 35.0%
ATTTGAGGAATTGGCCATTT+GGG + chr4.2:21715429-21715448 None:intergenic 35.0%
CTACCATGCAACACAATAAA+AGG + chr4.2:21715657-21715676 None:intergenic 35.0%
TGTTTCTCTCTTGATCTTCA+AGG - chr4.2:21715165-21715184 MS.gene39411:CDS 35.0%
TTATATGGTGAATCAATGGG+TGG - chr4.2:21715309-21715328 MS.gene39411:CDS 35.0%
TTCTTCATACCCTTACTACT+GGG - chr4.2:21714924-21714943 MS.gene39411:CDS 35.0%
TTGCTCAAATGAATCCTTTG+AGG - chr4.2:21715544-21715563 MS.gene39411:CDS 35.0%
! CTACCTTTTATTGTGTTGCA+TGG - chr4.2:21715651-21715670 MS.gene39411:CDS 35.0%
!! ATGAATCCTTTGAGGTATAG+AGG - chr4.2:21715552-21715571 MS.gene39411:CDS 35.0%
!! GGGTTACTGATATTTTGAGT+AGG - chr4.2:21715610-21715629 MS.gene39411:CDS 35.0%
!! TGAATCCTTTGAGGTATAGA+GGG - chr4.2:21715553-21715572 MS.gene39411:CDS 35.0%
!! TGTTGTGAAGGTTGATTTTG+TGG + chr4.2:21714995-21715014 None:intergenic 35.0%
AAGCCATGATCTTGTGAAGA+GGG + chr4.2:21715031-21715050 None:intergenic 40.0%
AGATCAGGTGTAGGAACAAT+AGG + chr4.2:21715486-21715505 None:intergenic 40.0%
ATAGAGGGAAACCTAGGTTA+GGG - chr4.2:21715568-21715587 MS.gene39411:CDS 40.0%
ATCTTCATGATCCATGGCTA+TGG - chr4.2:21715081-21715100 MS.gene39411:CDS 40.0%
ATGATCTTGTGAAGAGGGTT+AGG + chr4.2:21715026-21715045 None:intergenic 40.0%
CCAATCTTCCTTGCTCAAAT+GGG - chr4.2:21715135-21715154 MS.gene39411:CDS 40.0%
CTGATAAGGTTAGACCCAAA+TGG - chr4.2:21715412-21715431 MS.gene39411:CDS 40.0%
CTTCTTCATACCCTTACTAC+TGG - chr4.2:21714923-21714942 MS.gene39411:CDS 40.0%
GGGAATTGTATGAAGAAGCT+AGG - chr4.2:21715709-21715728 MS.gene39411:CDS 40.0%
GTAGGAACAATAGGCAAAGT+TGG + chr4.2:21715477-21715496 None:intergenic 40.0%
TAACCCTCTTCACAAGATCA+TGG - chr4.2:21715025-21715044 MS.gene39411:CDS 40.0%
TACAATTCCCTACTAACCTC+AGG + chr4.2:21715699-21715718 None:intergenic 40.0%
TACTGATCCTGAGGTTAGTA+GGG - chr4.2:21715689-21715708 MS.gene39411:CDS 40.0%
TATAGAGGGAAACCTAGGTT+AGG - chr4.2:21715567-21715586 MS.gene39411:CDS 40.0%
TCCAATCTTCCTTGCTCAAA+TGG - chr4.2:21715134-21715153 MS.gene39411:CDS 40.0%
TCTCTTGATCTTCAAGGACA+TGG - chr4.2:21715171-21715190 MS.gene39411:CDS 40.0%
TCTTCATACCCTTACTACTG+GGG - chr4.2:21714925-21714944 MS.gene39411:CDS 40.0%
TGATGTTGTTACTGATCCTG+AGG - chr4.2:21715680-21715699 MS.gene39411:CDS 40.0%
TTACTGATCCTGAGGTTAGT+AGG - chr4.2:21715688-21715707 MS.gene39411:CDS 40.0%
! ATAGCACCTTGAAACCCTTT+TGG + chr4.2:21715366-21715385 None:intergenic 40.0%
!! TAGGTTTCTTGGTGTTGTGA+AGG + chr4.2:21715007-21715026 None:intergenic 40.0%
!!! AGGGTTTCAAGGTGCTATTT+TGG - chr4.2:21715368-21715387 MS.gene39411:CDS 40.0%
AAGCGAAACCCATTTGAGCA+AGG + chr4.2:21715146-21715165 None:intergenic 45.0%
CAAGGAAGATTGGAGTGGAT+TGG + chr4.2:21715128-21715147 None:intergenic 45.0%
CAAGGACATGGTCATTCTCA+AGG - chr4.2:21715183-21715202 MS.gene39411:CDS 45.0%
CCCATTTGAGCAAGGAAGAT+TGG + chr4.2:21715138-21715157 None:intergenic 45.0%
GAAGCCATGATCTTGTGAAG+AGG + chr4.2:21715032-21715051 None:intergenic 45.0%
GCTCTCATCTTCATGATCCA+TGG - chr4.2:21715075-21715094 MS.gene39411:CDS 45.0%
GCTGATCCAAAAGGGTTTCA+AGG - chr4.2:21715357-21715376 MS.gene39411:CDS 45.0%
GGTTTCCCTCTATACCTCAA+AGG + chr4.2:21715561-21715580 None:intergenic 45.0%
GTGAAGAGGGTTAGGTTTCT+TGG + chr4.2:21715018-21715037 None:intergenic 45.0%
TGAGGTATAGAGGGAAACCT+AGG - chr4.2:21715562-21715581 MS.gene39411:CDS 45.0%
TGTACAACAAGGTCAACGCT+AGG + chr4.2:21715225-21715244 None:intergenic 45.0%
TTGAGCAAGGAAGATTGGAG+TGG + chr4.2:21715133-21715152 None:intergenic 45.0%
! ATCATGAAGATGAGAGCACG+TGG + chr4.2:21715072-21715091 None:intergenic 45.0%
AGATGTCGTTGCCATAGCCA+TGG + chr4.2:21715095-21715114 None:intergenic 50.0%
GAAACCTAGGTTAGGGACTG+TGG - chr4.2:21715575-21715594 MS.gene39411:CDS 50.0%
GCTATGGCAACGACATCTCA+TGG - chr4.2:21715097-21715116 MS.gene39411:CDS 50.0%
! ATGAAGATGAGAGCACGTGG+TGG + chr4.2:21715069-21715088 None:intergenic 50.0%
! TGAAGATGAGAGCACGTGGT+GGG + chr4.2:21715068-21715087 None:intergenic 50.0%
!! GACTGTGGTGGAGCTTTTGA+GGG - chr4.2:21715590-21715609 MS.gene39411:CDS 50.0%
ACCTAGGTTAGGGACTGTGG+TGG - chr4.2:21715578-21715597 MS.gene39411:CDS 55.0%
GGGTGTAGCCCCAGTAGTAA+GGG + chr4.2:21714936-21714955 None:intergenic 55.0%
TCCACCACAGTCCCTAACCT+AGG + chr4.2:21715582-21715601 None:intergenic 55.0%
! GAAGATGAGAGCACGTGGTG+GGG + chr4.2:21715067-21715086 None:intergenic 55.0%
!! GGACTGTGGTGGAGCTTTTG+AGG - chr4.2:21715589-21715608 MS.gene39411:CDS 55.0%
GGGGTGTAGCCCCAGTAGTA+AGG + chr4.2:21714937-21714956 None:intergenic 60.0%
! AGAGCACGTGGTGGGGTGGT+AGG + chr4.2:21715060-21715079 None:intergenic 65.0%
! CGTGGTGGGGTGGTAGGGTT+TGG + chr4.2:21715054-21715073 None:intergenic 65.0%
! GAGCACGTGGTGGGGTGGTA+GGG + chr4.2:21715059-21715078 None:intergenic 65.0%
! GATGAGAGCACGTGGTGGGG+TGG + chr4.2:21715064-21715083 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 21714880 21715857 21714880 ID=MS.gene39411
chr4.2 mRNA 21714880 21715857 21714880 ID=MS.gene39411.t1;Parent=MS.gene39411
chr4.2 exon 21714880 21715857 21714880 ID=MS.gene39411.t1.exon1;Parent=MS.gene39411.t1
chr4.2 CDS 21714880 21715857 21714880 ID=cds.MS.gene39411.t1;Parent=MS.gene39411.t1
Gene Sequence

>MS.gene39411

ATGGAAGAAGAAGGAGAAAAACAACACCAAAAGCTTCTTCAATCTTCTTCATACCCTTACTACTGGGGCTACACCCCAGAATCTGAATACTACAAACAACACAAAATCATATCCACAAAATCAACCTTCACAACACCAAGAAACCTAACCCTCTTCACAAGATCATGGCTTCCAAACCCTACCACCCCACCACGTGCTCTCATCTTCATGATCCATGGCTATGGCAACGACATCTCATGGACTTTCCAATCCACTCCAATCTTCCTTGCTCAAATGGGTTTCGCTTGTTTCTCTCTTGATCTTCAAGGACATGGTCATTCTCAAGGTTTAAAAGCTTTTGTTCCTAGCGTTGACCTTGTTGTACAAGATTGTCTCTCTTTCTTTAATTCTGTTAAGAAAGATTCAAACTTTGTTGGATTGCCTTGTTTTTTATATGGTGAATCAATGGGTGGTGCTATCTGTCTGTTGATTCATTTTGCTGATCCAAAAGGGTTTCAAGGTGCTATTTTGGTAGCACCTATGTGTAAAATCTCTGATAAGGTTAGACCCAAATGGCCAATTCCTCAAATTTTAACTTTTTTAGCTAAATTCTTTCCAACTTTGCCTATTGTTCCTACACCTGATCTTTTGTATAAGTCTGTGAAAGTTGATCATAAGAAGGTTATTGCTCAAATGAATCCTTTGAGGTATAGAGGGAAACCTAGGTTAGGGACTGTGGTGGAGCTTTTGAGGGTTACTGATATTTTGAGTAGGAAGCTTTGTGATGTTGAACTACCTTTTATTGTGTTGCATGGTAGTGCTGATGTTGTTACTGATCCTGAGGTTAGTAGGGAATTGTATGAAGAAGCTAGGAGTGATGATAAGACTATTAAGGTGTTTGATGGGATGATGCATTCTTTGCTTTTTGGTGAAACTGATGAGAATGTTGAAATTGTTAGGAATGATATTTTGCAGTGGTTGAATGCTAGATGCAAGTGA
Protein sequence

>MS.gene39411.t1

MEEEGEKQHQKLLQSSSYPYYWGYTPESEYYKQHKIISTKSTFTTPRNLTLFTRSWLPNPTTPPRALIFMIHGYGNDISWTFQSTPIFLAQMGFACFSLDLQGHGHSQGLKAFVPSVDLVVQDCLSFFNSVKKDSNFVGLPCFLYGESMGGAICLLIHFADPKGFQGAILVAPMCKISDKVRPKWPIPQILTFLAKFFPTLPIVPTPDLLYKSVKVDHKKVIAQMNPLRYRGKPRLGTVVELLRVTDILSRKLCDVELPFIVLHGSADVVTDPEVSRELYEEARSDDKTIKVFDGMMHSLLFGETDENVEIVRNDILQWLNARCK