AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene91236

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene91236.t1 MTR_5g074580 93.333 360 24 0 1 360 1 360 0.0 697
MS.gene91236.t1 MTR_5g074680 84.401 359 56 0 1 359 1 359 0.0 639
MS.gene91236.t1 MTR_5g074600 82.222 360 63 1 1 360 1 359 0.0 618
MS.gene91236.t1 MTR_5g074540 76.111 360 67 2 1 360 1 341 0.0 565
MS.gene91236.t1 MTR_5g074610 73.889 360 60 3 1 360 1 326 0.0 543
MS.gene91236.t1 MTR_4g079160 63.989 361 123 5 1 360 1 355 1.97e-169 476
MS.gene91236.t1 MTR_4g033200 49.727 366 175 6 1 360 1 363 2.87e-117 344
MS.gene91236.t1 MTR_7g014570 48.424 349 173 4 12 360 11 352 6.38e-117 343
MS.gene91236.t1 MTR_4g033015 49.454 366 176 6 1 360 1 363 5.67e-116 341
MS.gene91236.t1 MTR_4g088200 46.742 353 182 5 12 360 11 361 3.53e-115 339
MS.gene91236.t1 MTR_1g076940 46.027 365 188 7 1 360 1 361 9.29e-113 333
MS.gene91236.t1 MTR_4g033150 48.626 364 176 6 3 360 5 363 1.48e-112 332
MS.gene91236.t1 MTR_7g014510 46.307 352 181 5 12 360 11 357 5.53e-112 330
MS.gene91236.t1 MTR_4g088190 47.753 356 177 5 12 360 11 364 5.25e-109 323
MS.gene91236.t1 MTR_7g024520 45.531 358 185 5 1 358 1 348 6.27e-108 320
MS.gene91236.t1 MTR_7g024500 44.413 358 189 5 1 358 1 348 7.14e-108 320
MS.gene91236.t1 MTR_4g088345 45.682 359 190 4 3 360 2 356 2.10e-107 319
MS.gene91236.t1 MTR_4g033170 45.730 363 186 6 1 360 3 357 1.84e-98 296
MS.gene91236.t1 MTR_4g088340 45.104 337 180 4 25 360 1 333 3.46e-98 295
MS.gene91236.t1 MTR_4g033085 44.353 363 191 6 1 360 3 357 2.50e-94 285
MS.gene91236.t1 MTR_3g083620 37.389 337 204 4 21 356 27 357 3.27e-77 242
MS.gene91236.t1 MTR_4g038440 39.429 350 202 7 15 360 25 368 1.27e-76 240
MS.gene91236.t1 MTR_0079s0070 39.645 338 194 7 27 360 3 334 4.69e-74 233
MS.gene91236.t1 MTR_0017s0100 38.000 350 207 6 15 360 25 368 5.68e-70 223
MS.gene91236.t1 MTR_0794s0020 42.570 249 133 5 3 245 5 249 8.43e-65 206
MS.gene91236.t1 MTR_1g076930 41.597 238 135 3 25 259 1 237 2.88e-60 194
MS.gene91236.t1 MTR_7g118300 32.424 330 209 9 32 355 47 368 4.75e-47 164
MS.gene91236.t1 MTR_4g038440 36.694 248 152 3 15 259 25 270 1.18e-45 157
MS.gene91236.t1 MTR_0591s0010 30.816 331 190 7 32 341 46 358 2.02e-45 160
MS.gene91236.t1 MTR_7g118320 30.675 326 207 10 31 345 30 347 5.67e-45 158
MS.gene91236.t1 MTR_3g092900 30.247 324 209 9 32 346 34 349 6.46e-45 158
MS.gene91236.t1 MTR_8g068870 28.852 357 195 8 20 345 20 348 2.44e-44 156
MS.gene91236.t1 MTR_5g098170 29.969 327 209 9 32 347 33 350 2.99e-44 156
MS.gene91236.t1 MTR_8g068750 29.070 344 187 6 32 345 46 362 3.81e-44 156
MS.gene91236.t1 MTR_8g068690 30.503 318 208 7 32 341 45 357 4.52e-42 150
MS.gene91236.t1 MTR_8g024160 34.409 279 166 8 86 359 61 327 5.20e-42 149
MS.gene91236.t1 MTR_1g096310 28.313 332 220 7 27 347 34 358 9.09e-42 150
MS.gene91236.t1 MTR_1g036490 31.070 383 210 13 5 359 13 369 1.18e-40 147
MS.gene91236.t1 MTR_6g078850 30.275 327 207 10 32 345 50 368 1.47e-40 149
MS.gene91236.t1 MTR_1g036460 29.921 381 233 11 1 359 1 369 5.80e-40 145
MS.gene91236.t1 MTR_7g012090 28.531 354 214 11 27 355 34 373 6.56e-40 145
MS.gene91236.t1 MTR_3g021430 29.972 357 224 11 1 346 1 342 1.32e-39 144
MS.gene91236.t1 MTR_7g012070 29.392 296 184 8 74 355 89 373 3.71e-39 143
MS.gene91236.t1 MTR_7g012040 28.446 341 225 9 27 355 33 366 4.94e-39 142
MS.gene91236.t1 MTR_2g055940 30.120 249 159 6 115 359 125 362 3.27e-38 140
MS.gene91236.t1 MTR_3g021440 30.938 320 209 8 34 347 43 356 2.58e-37 138
MS.gene91236.t1 MTR_7g011900 27.356 329 225 8 27 347 34 356 1.43e-36 136
MS.gene91236.t1 MTR_1g036510 36.816 201 122 3 147 347 174 369 4.24e-36 135
MS.gene91236.t1 MTR_7g011990 29.388 245 167 4 116 359 127 366 6.70e-36 134
MS.gene91236.t1 MTR_7g012020 26.531 343 235 9 27 359 33 368 2.47e-35 132
MS.gene91236.t1 MTR_2g072790 30.218 321 209 8 32 345 27 339 1.88e-34 130
MS.gene91236.t1 MTR_8g068570 38.462 169 94 5 162 327 156 317 3.60e-32 123
MS.gene91236.t1 MTR_8g068730 26.163 344 165 6 32 345 46 330 2.18e-31 121
MS.gene91236.t1 MTR_3g096050 28.000 350 232 12 8 345 2 343 2.81e-30 119
MS.gene91236.t1 MTR_3g096070 27.920 351 208 13 8 345 2 320 6.97e-29 114
MS.gene91236.t1 MTR_8g068600 26.809 235 150 7 40 260 28 254 2.29e-22 95.9
MS.gene91236.t1 MTR_1g050220 33.758 157 90 3 194 350 151 293 1.47e-21 94.0
MS.gene91236.t1 MTR_8g068620 37.168 113 70 1 150 262 2 113 5.04e-21 87.4
MS.gene91236.t1 MTR_7g012020 25.820 244 173 5 27 263 33 275 5.32e-21 92.4
MS.gene91236.t1 MTR_8g068690 26.360 239 166 6 32 262 45 281 7.53e-21 91.7
MS.gene91236.t1 MTR_8g068740 23.958 288 133 5 32 289 46 277 5.52e-19 86.3
MS.gene91236.t1 MTR_3g096050 27.481 262 176 9 8 259 2 259 4.15e-18 83.6
MS.gene91236.t1 MTR_1g036510 33.628 113 74 1 147 259 174 285 5.19e-15 75.1
MS.gene91236.t1 MTR_4g025570 42.268 97 51 4 261 356 122 214 1.19e-13 69.7
MS.gene91236.t1 MTR_7g012020 25.000 212 151 5 27 231 33 243 1.26e-13 70.5
MS.gene91236.t1 MTR_8g068760 40.230 87 49 1 259 345 135 218 5.91e-13 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene91236.t1 AT4G35160 34.771 371 221 9 4 359 16 380 5.32e-66 214
MS.gene91236.t1 AT4G35150 33.243 367 189 9 4 359 2 323 1.64e-60 197
MS.gene91236.t1 AT1G51990 33.553 304 190 7 63 360 65 362 5.25e-48 166
MS.gene91236.t1 AT1G51990 33.553 304 190 7 63 360 65 362 6.49e-48 166
MS.gene91236.t1 AT5G54160 31.562 320 208 8 32 346 34 347 1.80e-47 165
MS.gene91236.t1 AT1G33030 33.231 325 198 12 32 346 21 336 2.70e-42 151
MS.gene91236.t1 AT1G77520 28.418 373 240 10 2 359 20 380 1.15e-40 147
MS.gene91236.t1 AT3G53140 30.887 327 204 10 32 345 27 344 3.32e-39 143
MS.gene91236.t1 AT5G53810 31.897 348 211 13 30 359 38 377 1.80e-36 136
MS.gene91236.t1 AT1G63140 29.491 373 236 11 2 359 20 380 8.71e-34 129
MS.gene91236.t1 AT1G63140 29.491 373 236 11 2 359 40 400 1.05e-33 129
MS.gene91236.t1 AT1G21130 29.429 333 204 12 32 346 40 359 1.67e-33 128
MS.gene91236.t1 AT1G77530 30.027 373 234 11 2 359 20 380 2.08e-33 128
MS.gene91236.t1 AT1G21110 28.267 329 205 12 32 342 40 355 2.29e-30 119
MS.gene91236.t1 AT5G37170 33.803 213 129 7 151 359 29 233 2.62e-30 116
MS.gene91236.t1 AT1G21100 27.928 333 209 12 32 346 40 359 5.04e-30 118
MS.gene91236.t1 AT1G21120 28.228 333 208 12 32 346 40 359 5.58e-30 118
MS.gene91236.t1 AT5G37170 33.803 213 129 7 151 359 129 333 8.06e-30 117
MS.gene91236.t1 AT1G21120 28.228 333 208 12 32 346 88 407 1.23e-29 118
MS.gene91236.t1 AT1G62900 35.577 208 129 3 153 359 1 204 3.05e-29 112
MS.gene91236.t1 AT1G76790 27.190 331 206 10 32 341 30 346 1.83e-28 114
MS.gene91236.t1 AT5G37170 34.946 186 109 6 181 359 5 185 8.90e-27 105
MS.gene91236.t1 AT1G33030 29.661 236 154 8 32 259 21 252 6.66e-20 88.6
MS.gene91236.t1 AT1G33030 29.661 236 154 8 32 259 21 252 9.80e-20 88.2
MS.gene91236.t1 AT1G63140 26.471 272 177 9 2 259 40 302 1.67e-14 73.9
MS.gene91236.t1 AT1G21130 27.160 243 154 8 32 259 40 274 2.40e-12 67.4

Find 68 sgRNAs with CRISPR-Local

Find 82 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAACATTCTCTTCATTATTT+TGG 0.038167 5.1:-57249045 None:intergenic
CTTAAATGTGTTGTTGATTT+AGG 0.154523 5.1:+57249136 MS.gene91236:CDS
CGACACACGGGATGTTGATA+TGG 0.233179 5.1:+57249482 MS.gene91236:CDS
AGAGACCTTAAGCCTAAAAT+TGG 0.252210 5.1:-57250184 None:intergenic
CCATAATTGTGTATGATATC+AGG 0.254841 5.1:-57249163 None:intergenic
CCTGATATCATACACAATTA+TGG 0.284388 5.1:+57249163 MS.gene91236:CDS
ATGCGAATAATGACTCATTC+TGG 0.312409 5.1:+57249262 MS.gene91236:CDS
CGTGGCATCAATTCTCTACT+TGG 0.365039 5.1:+57249428 MS.gene91236:CDS
GCTTTGAGCTTTGAGTAAAT+TGG 0.373576 5.1:-57249071 None:intergenic
TGCAGTGGATATTGCATGAT+TGG 0.384572 5.1:+57249915 MS.gene91236:intron
TGCCACGGGTTTGTCAAAAC+TGG 0.395490 5.1:-57249412 None:intergenic
ATGGATTAAGTTGATTTCTT+CGG 0.409901 5.1:+57250135 MS.gene91236:CDS
TGCTAAATCATTCCCACAAA+TGG 0.411413 5.1:+57249672 MS.gene91236:CDS
ATTCAATGGATTGGAGTCAT+TGG 0.421743 5.1:+57249609 MS.gene91236:CDS
TCAAAGCTCAAAGCCACATA+TGG 0.423149 5.1:+57249080 MS.gene91236:CDS
AAGAGAGAAACGAGAAAGAA+TGG 0.424421 5.1:+57250116 MS.gene91236:CDS
TGCATCCGTATTACTACTTA+AGG 0.425584 5.1:+57249345 MS.gene91236:CDS
TTGGAGTCATTGGTTGATGT+TGG 0.427653 5.1:+57249619 MS.gene91236:CDS
AACAAAATGGCGTCTGTTGG+AGG 0.433773 5.1:-57249787 None:intergenic
TTTGTTGATTGAAAAGTGTA+GGG 0.454603 5.1:+57249582 MS.gene91236:CDS
GTTGATGTTGGAGGAGGCAC+AGG 0.457563 5.1:+57249631 MS.gene91236:CDS
ATTGTCCTTAAGTAGTAATA+CGG 0.459915 5.1:-57249350 None:intergenic
AGTGAGAATTTAAACTATGT+TGG 0.463618 5.1:+57249742 MS.gene91236:CDS
CTTCTTTGATATGTTGATGA+TGG 0.474685 5.1:+57250078 MS.gene91236:CDS
AAGACACTGCACTCCATTTG+TGG 0.477005 5.1:-57249685 None:intergenic
TGTGTCGTTTCAAATGTTGT+AGG 0.487417 5.1:-57249466 None:intergenic
ACGAATGGCGTCACGCTCAT+TGG 0.491626 5.1:-57249373 None:intergenic
TAGGGGAGTATTCAATGGAT+TGG 0.495288 5.1:+57249600 MS.gene91236:CDS
GACACACGGGATGTTGATAT+GGG 0.503724 5.1:+57249483 MS.gene91236:CDS
AAGTGTAGGGGAGTATTCAA+TGG 0.504991 5.1:+57249595 MS.gene91236:CDS
TGAAAATGTGATTCCATATG+TGG 0.508708 5.1:-57249093 None:intergenic
AAACTTATTCAATGAGTCCA+TGG 0.509220 5.1:+57249534 MS.gene91236:CDS
ATAGCAAAGAAAGGTAAAGA+AGG 0.509576 5.1:+57249983 MS.gene91236:CDS
AGACACTGCACTCCATTTGT+GGG 0.511364 5.1:-57249684 None:intergenic
CATGTTGTCGATGGCTTGCA+AGG 0.511966 5.1:+57249718 MS.gene91236:CDS
GAGAATTTAAACTATGTTGG+TGG 0.520299 5.1:+57249745 MS.gene91236:CDS
TTCAACAAAATGGCGTCTGT+TGG 0.520911 5.1:-57249790 None:intergenic
AGGCACAGGGACCATGGCAA+AGG 0.525336 5.1:+57249645 MS.gene91236:CDS
AAAGAAAGGTAAAGAAGGGA+AGG 0.534278 5.1:+57249988 MS.gene91236:CDS
ATTTGTTGATTGAAAAGTGT+AGG 0.534400 5.1:+57249581 MS.gene91236:CDS
TCGAGCATCGCATGCACGAA+TGG 0.541584 5.1:-57249388 None:intergenic
ATTAAGTTGATTTCTTCGGC+TGG 0.550414 5.1:+57250139 MS.gene91236:CDS
GATCTACCACATGTTGTCGA+TGG 0.552326 5.1:+57249709 MS.gene91236:CDS
GAGTCATTGGTTGATGTTGG+AGG 0.554899 5.1:+57249622 MS.gene91236:CDS
ATGGTGTTGGAAAGTGAGAA+GGG 0.555376 5.1:+57250025 MS.gene91236:CDS
TCATTGGTTGATGTTGGAGG+AGG 0.559528 5.1:+57249625 MS.gene91236:CDS
CATGGTGTTGGAAAGTGAGA+AGG 0.565194 5.1:+57250024 MS.gene91236:CDS
TTGATGATGGTAGTACTCAC+AGG 0.567324 5.1:+57250091 MS.gene91236:CDS
TTTAGCAAGGGCCTTTGCCA+TGG 0.572788 5.1:-57249656 None:intergenic
AACAACACATTTAAGTGACA+TGG 0.577803 5.1:-57249128 None:intergenic
AAGGATGCAATAGCAAAGAA+AGG 0.578531 5.1:+57249974 MS.gene91236:CDS
AAGTAGTAATACGGATGCAT+CGG 0.581276 5.1:-57249341 None:intergenic
TAGCAAAGAAAGGTAAAGAA+GGG 0.583690 5.1:+57249984 MS.gene91236:CDS
TCATTATTCGCATCAAGCGA+TGG 0.586198 5.1:-57249252 None:intergenic
TTTGTGGGAATGATTTAGCA+AGG 0.587728 5.1:-57249669 None:intergenic
TAATCGAGCATCACTTGCCA+TGG 0.588822 5.1:-57249551 None:intergenic
TTGTGGGAATGATTTAGCAA+GGG 0.591958 5.1:-57249668 None:intergenic
TGGAGGAGGCACAGGGACCA+TGG 0.591972 5.1:+57249639 MS.gene91236:CDS
AAGTAGAGAATTGATGCCAC+GGG 0.597289 5.1:-57249426 None:intergenic
GATTGTGATAGACATGGTGT+TGG 0.599108 5.1:+57250012 MS.gene91236:CDS
CAAGTAGAGAATTGATGCCA+CGG 0.608243 5.1:-57249427 None:intergenic
ACAACATTTGAAACGACACA+CGG 0.615695 5.1:+57249469 MS.gene91236:CDS
TTGTTGATTGAAAAGTGTAG+GGG 0.631295 5.1:+57249583 MS.gene91236:CDS
TGCAAGCCATCGACAACATG+TGG 0.637297 5.1:-57249715 None:intergenic
TTGATGTTGGAGGAGGCACA+GGG 0.656877 5.1:+57249632 MS.gene91236:CDS
CAACATTTGAAACGACACAC+GGG 0.671406 5.1:+57249470 MS.gene91236:CDS
TTTAAATTTAGAGTCACGCG+CGG 0.701266 5.1:-57249512 None:intergenic
GAAGGTGATTGTGATAGACA+TGG 0.741542 5.1:+57250006 MS.gene91236:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATATTAAGGAATTGTA+AGG + chr5.1:57249955-57249974 MS.gene91236:CDS 15.0%
!! ATGAATGTGTAAAAATATTA+AGG + chr5.1:57249945-57249964 MS.gene91236:CDS 15.0%
!!! AACATTCTCTTCATTATTTT+GGG - chr5.1:57249047-57249066 None:intergenic 20.0%
! AGTGAGAATTTAAACTATGT+TGG + chr5.1:57249742-57249761 MS.gene91236:CDS 25.0%
! ATTGTCCTTAAGTAGTAATA+CGG - chr5.1:57249353-57249372 None:intergenic 25.0%
!! ACACTTTTCAATCAACAAAT+TGG - chr5.1:57249581-57249600 None:intergenic 25.0%
!! ACATTTTACCTTCAACAAAA+TGG - chr5.1:57249803-57249822 None:intergenic 25.0%
!! ATTTGTTGATTGAAAAGTGT+AGG + chr5.1:57249581-57249600 MS.gene91236:CDS 25.0%
!! CAACATTCTCTTCATTATTT+TGG - chr5.1:57249048-57249067 None:intergenic 25.0%
!! TACAAGATTACTCCAATTTT+AGG + chr5.1:57250172-57250191 MS.gene91236:CDS 25.0%
!! TTTGTTGATTGAAAAGTGTA+GGG + chr5.1:57249582-57249601 MS.gene91236:CDS 25.0%
!!! AATAAGTTTTGAGAGTGATA+TGG - chr5.1:57249194-57249213 None:intergenic 25.0%
!!! ATGGATTAAGTTGATTTCTT+CGG + chr5.1:57250135-57250154 MS.gene91236:CDS 25.0%
!!! CTTAAATGTGTTGTTGATTT+AGG + chr5.1:57249136-57249155 MS.gene91236:CDS 25.0%
AAACTTATTCAATGAGTCCA+TGG + chr5.1:57249534-57249553 MS.gene91236:CDS 30.0%
AACAACACATTTAAGTGACA+TGG - chr5.1:57249131-57249150 None:intergenic 30.0%
AAGTCTGAATAAAATTGCAG+TGG + chr5.1:57249900-57249919 MS.gene91236:intron 30.0%
ATAGCAAAGAAAGGTAAAGA+AGG + chr5.1:57249983-57250002 MS.gene91236:CDS 30.0%
CCATAATTGTGTATGATATC+AGG - chr5.1:57249166-57249185 None:intergenic 30.0%
CCTGATATCATACACAATTA+TGG + chr5.1:57249163-57249182 MS.gene91236:CDS 30.0%
GAGAATTTAAACTATGTTGG+TGG + chr5.1:57249745-57249764 MS.gene91236:CDS 30.0%
TAGCAAAGAAAGGTAAAGAA+GGG + chr5.1:57249984-57250003 MS.gene91236:CDS 30.0%
TGAAAATGTGATTCCATATG+TGG - chr5.1:57249096-57249115 None:intergenic 30.0%
! CTTCTTTGATATGTTGATGA+TGG + chr5.1:57250078-57250097 MS.gene91236:CDS 30.0%
! TTACTCCAATTTTAGGCTTA+AGG + chr5.1:57250179-57250198 MS.gene91236:CDS 30.0%
! TTGTTGATTGAAAAGTGTAG+GGG + chr5.1:57249583-57249602 MS.gene91236:CDS 30.0%
AAAGAAAGGTAAAGAAGGGA+AGG + chr5.1:57249988-57250007 MS.gene91236:CDS 35.0%
AAGAGAGAAACGAGAAAGAA+TGG + chr5.1:57250116-57250135 MS.gene91236:CDS 35.0%
AAGGATGCAATAGCAAAGAA+AGG + chr5.1:57249974-57249993 MS.gene91236:CDS 35.0%
AAGTAGTAATACGGATGCAT+CGG - chr5.1:57249344-57249363 None:intergenic 35.0%
AGAGACCTTAAGCCTAAAAT+TGG - chr5.1:57250187-57250206 None:intergenic 35.0%
ATGCGAATAATGACTCATTC+TGG + chr5.1:57249262-57249281 MS.gene91236:CDS 35.0%
TGCATCCGTATTACTACTTA+AGG + chr5.1:57249345-57249364 MS.gene91236:CDS 35.0%
TGCTAAATCATTCCCACAAA+TGG + chr5.1:57249672-57249691 MS.gene91236:CDS 35.0%
TTGTGGGAATGATTTAGCAA+GGG - chr5.1:57249671-57249690 None:intergenic 35.0%
TTTGTGGGAATGATTTAGCA+AGG - chr5.1:57249672-57249691 None:intergenic 35.0%
! ACAACATTTGAAACGACACA+CGG + chr5.1:57249469-57249488 MS.gene91236:CDS 35.0%
! TTTAAATTTAGAGTCACGCG+CGG - chr5.1:57249515-57249534 None:intergenic 35.0%
!! ATTAAGTTGATTTCTTCGGC+TGG + chr5.1:57250139-57250158 MS.gene91236:CDS 35.0%
!! ATTCAATGGATTGGAGTCAT+TGG + chr5.1:57249609-57249628 MS.gene91236:CDS 35.0%
!! CATGTTTTTGAAGGGTGAAT+TGG - chr5.1:57249226-57249245 None:intergenic 35.0%
!! GCTTTGAGCTTTGAGTAAAT+TGG - chr5.1:57249074-57249093 None:intergenic 35.0%
!! GGATGAAGCATGTTTTTGAA+GGG - chr5.1:57249234-57249253 None:intergenic 35.0%
!! TGGATGAAGCATGTTTTTGA+AGG - chr5.1:57249235-57249254 None:intergenic 35.0%
!! TGTGTCGTTTCAAATGTTGT+AGG - chr5.1:57249469-57249488 None:intergenic 35.0%
AAGTAGAGAATTGATGCCAC+GGG - chr5.1:57249429-57249448 None:intergenic 40.0%
CAAGTAGAGAATTGATGCCA+CGG - chr5.1:57249430-57249449 None:intergenic 40.0%
GAAGGTGATTGTGATAGACA+TGG + chr5.1:57250006-57250025 MS.gene91236:CDS 40.0%
GATTGTGATAGACATGGTGT+TGG + chr5.1:57250012-57250031 MS.gene91236:CDS 40.0%
TCAAAGCTCAAAGCCACATA+TGG + chr5.1:57249080-57249099 MS.gene91236:CDS 40.0%
TCATTATTCGCATCAAGCGA+TGG - chr5.1:57249255-57249274 None:intergenic 40.0%
TGCAGTGGATATTGCATGAT+TGG + chr5.1:57249915-57249934 MS.gene91236:intron 40.0%
TTCAACAAAATGGCGTCTGT+TGG - chr5.1:57249793-57249812 None:intergenic 40.0%
! ATGGTGTTGGAAAGTGAGAA+GGG + chr5.1:57250025-57250044 MS.gene91236:CDS 40.0%
! CAACATTTGAAACGACACAC+GGG + chr5.1:57249470-57249489 MS.gene91236:CDS 40.0%
! TTGGAGTCATTGGTTGATGT+TGG + chr5.1:57249619-57249638 MS.gene91236:CDS 40.0%
!! AACAGACGCCATTTTGTTGA+AGG + chr5.1:57249792-57249811 MS.gene91236:CDS 40.0%
!! AAGTGTAGGGGAGTATTCAA+TGG + chr5.1:57249595-57249614 MS.gene91236:CDS 40.0%
!! TAGGGGAGTATTCAATGGAT+TGG + chr5.1:57249600-57249619 MS.gene91236:CDS 40.0%
!! TTGATGATGGTAGTACTCAC+AGG + chr5.1:57250091-57250110 MS.gene91236:CDS 40.0%
AACAAAATGGCGTCTGTTGG+AGG - chr5.1:57249790-57249809 None:intergenic 45.0%
AAGACACTGCACTCCATTTG+TGG - chr5.1:57249688-57249707 None:intergenic 45.0%
AGACACTGCACTCCATTTGT+GGG - chr5.1:57249687-57249706 None:intergenic 45.0%
CGTGGCATCAATTCTCTACT+TGG + chr5.1:57249428-57249447 MS.gene91236:CDS 45.0%
GACACACGGGATGTTGATAT+GGG + chr5.1:57249483-57249502 MS.gene91236:CDS 45.0%
GATCTACCACATGTTGTCGA+TGG + chr5.1:57249709-57249728 MS.gene91236:CDS 45.0%
TAATCGAGCATCACTTGCCA+TGG - chr5.1:57249554-57249573 None:intergenic 45.0%
! CATGGTGTTGGAAAGTGAGA+AGG + chr5.1:57250024-57250043 MS.gene91236:CDS 45.0%
! GAGTCATTGGTTGATGTTGG+AGG + chr5.1:57249622-57249641 MS.gene91236:CDS 45.0%
! TCATTGGTTGATGTTGGAGG+AGG + chr5.1:57249625-57249644 MS.gene91236:CDS 45.0%
!! ATCCAGTTTTGACAAACCCG+TGG + chr5.1:57249410-57249429 MS.gene91236:CDS 45.0%
CGACACACGGGATGTTGATA+TGG + chr5.1:57249482-57249501 MS.gene91236:CDS 50.0%
TGCAAGCCATCGACAACATG+TGG - chr5.1:57249718-57249737 None:intergenic 50.0%
TGCCACGGGTTTGTCAAAAC+TGG - chr5.1:57249415-57249434 None:intergenic 50.0%
TTTAGCAAGGGCCTTTGCCA+TGG - chr5.1:57249659-57249678 None:intergenic 50.0%
! CATGTTGTCGATGGCTTGCA+AGG + chr5.1:57249718-57249737 MS.gene91236:CDS 50.0%
! TTGATGTTGGAGGAGGCACA+GGG + chr5.1:57249632-57249651 MS.gene91236:CDS 50.0%
ACGAATGGCGTCACGCTCAT+TGG - chr5.1:57249376-57249395 None:intergenic 55.0%
! GTTGATGTTGGAGGAGGCAC+AGG + chr5.1:57249631-57249650 MS.gene91236:CDS 55.0%
! TCGAGCATCGCATGCACGAA+TGG - chr5.1:57249391-57249410 None:intergenic 55.0%
AGGCACAGGGACCATGGCAA+AGG + chr5.1:57249645-57249664 MS.gene91236:CDS 60.0%
! TGGAGGAGGCACAGGGACCA+TGG + chr5.1:57249639-57249658 MS.gene91236:CDS 65.0%


Chromosome Type Strat End Strand Name
chr5.1 gene 57249037 57250225 57249037 ID=MS.gene91236
chr5.1 mRNA 57249037 57250225 57249037 ID=MS.gene91236.t1;Parent=MS.gene91236
chr5.1 exon 57249037 57249813 57249037 ID=MS.gene91236.t1.exon1;Parent=MS.gene91236.t1
chr5.1 CDS 57249037 57249813 57249037 ID=cds.MS.gene91236.t1;Parent=MS.gene91236.t1
chr5.1 exon 57249920 57250225 57249920 ID=MS.gene91236.t1.exon2;Parent=MS.gene91236.t1
chr5.1 CDS 57249920 57250225 57249920 ID=cds.MS.gene91236.t1;Parent=MS.gene91236.t1
Gene Sequence

>MS.gene91236

ATGGAATCCCAAAATAATGAAGAGAATGTTGCTTCCAATTTACTCAAAGCTCAAAGCCACATATGGAATCACATTTTCAACTTCATAAATTCCATGTCACTTAAATGTGTTGTTGATTTAGGCATACCTGATATCATACACAATTATGGAAAATCCATATCACTCTCAAAACTTATTTCTTTGCTACCAATTCACCCTTCAAAAACATGCTTCATCCATCGCTTGATGCGAATAATGACTCATTCTGGTTTCTTCTCTCAACATAATGTTTCAGAGAATGAGCTAGAAATTGAGTATATGTTAACCGATGCATCCGTATTACTACTTAAGGACAATCCAATGAGCGTGACGCCATTCGTGCATGCGATGCTCGATCCAGTTTTGACAAACCCGTGGCATCAATTCTCTACTTGGTTAAAAAATGATGATCCTACAACATTTGAAACGACACACGGGATGTTGATATGGGATTATACCGCGCGTGACTCTAAATTTAAAAACTTATTCAATGAGTCCATGGCAAGTGATGCTCGATTAGTGACCAATTTGTTGATTGAAAAGTGTAGGGGAGTATTCAATGGATTGGAGTCATTGGTTGATGTTGGAGGAGGCACAGGGACCATGGCAAAGGCCCTTGCTAAATCATTCCCACAAATGGAGTGCAGTGTCTTTGATCTACCACATGTTGTCGATGGCTTGCAAGGTAGTGAGAATTTAAACTATGTTGGTGGAGACATGTTTAAAGAAATTCCTCCAACAGACGCCATTTTGTTGAAGGTAAAATGTTACAACATTCATTTAAATATATGTGAATATTTCACGTTACGTATTTTCTTTTATCTATGTTCTTTAGTAATCAATCAAAGTCTGAATAAAATTGCAGTGGATATTGCATGATTGGAATGACGATGAATGTGTAAAAATATTAAGGAATTGTAAGGATGCAATAGCAAAGAAAGGTAAAGAAGGGAAGGTGATTGTGATAGACATGGTGTTGGAAAGTGAGAAGGGAAACATTAAAGAATCAGTTGAAACACAACTCTTCTTTGATATGTTGATGATGGTAGTACTCACAGGAAAAGAGAGAAACGAGAAAGAATGGATTAAGTTGATTTCTTCGGCTGGTTTTAGTGACTACAAGATTACTCCAATTTTAGGCTTAAGGTCTCTAATTGAGATATATCCATAA
Protein sequence

>MS.gene91236.t1

MESQNNEENVASNLLKAQSHIWNHIFNFINSMSLKCVVDLGIPDIIHNYGKSISLSKLISLLPIHPSKTCFIHRLMRIMTHSGFFSQHNVSENELEIEYMLTDASVLLLKDNPMSVTPFVHAMLDPVLTNPWHQFSTWLKNDDPTTFETTHGMLIWDYTARDSKFKNLFNESMASDARLVTNLLIEKCRGVFNGLESLVDVGGGTGTMAKALAKSFPQMECSVFDLPHVVDGLQGSENLNYVGGDMFKEIPPTDAILLKWILHDWNDDECVKILRNCKDAIAKKGKEGKVIVIDMVLESEKGNIKESVETQLFFDMLMMVVLTGKERNEKEWIKLISSAGFSDYKITPILGLRSLIEIYP