Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91259.t1 | XP_024632360.1 | 65.8 | 240 | 47 | 3 | 5 | 210 | 20 | 258 | 2.30E-72 | 282 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91259.t1 | Q9MAT6 | 52.9 | 51 | 24 | 0 | 160 | 210 | 158 | 208 | 1.1e-06 | 55.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91259.t1 | A0A072VBD4 | 65.8 | 240 | 47 | 3 | 5 | 210 | 20 | 258 | 1.7e-72 | 282.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene91259 | 0.81465 | 1.38E-51 | -1.69E-46 |
| MS.gene049850 | MS.gene91259 | 0.801413 | 9.11E-49 | -1.69E-46 |
| MS.gene051332 | MS.gene91259 | 0.801839 | 7.45E-49 | -1.69E-46 |
| MS.gene051719 | MS.gene91259 | 0.806138 | 9.52E-50 | -1.69E-46 |
| MS.gene051720 | MS.gene91259 | 0.805207 | 1.49E-49 | -1.69E-46 |
| MS.gene051744 | MS.gene91259 | 0.806471 | 8.09E-50 | -1.69E-46 |
| MS.gene052519 | MS.gene91259 | 0.804161 | 2.47E-49 | -1.69E-46 |
| MS.gene052584 | MS.gene91259 | 0.805312 | 1.42E-49 | -1.69E-46 |
| MS.gene053226 | MS.gene91259 | 0.810453 | 1.14E-50 | -1.69E-46 |
| MS.gene053966 | MS.gene91259 | 0.804795 | 1.82E-49 | -1.69E-46 |
| MS.gene054651 | MS.gene91259 | 0.828725 | 7.66E-55 | -1.69E-46 |
| MS.gene056050 | MS.gene91259 | 0.80786 | 4.11E-50 | -1.69E-46 |
| MS.gene058625 | MS.gene91259 | 0.806911 | 6.54E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91259.t1 | MTR_2g084410 | 71.200 | 250 | 17 | 5 | 5 | 210 | 20 | 258 | 3.30e-112 | 322 |
| MS.gene91259.t1 | MTR_2g084375 | 70.000 | 250 | 20 | 5 | 5 | 210 | 6 | 244 | 4.61e-110 | 316 |
| MS.gene91259.t1 | MTR_2g072770 | 86.000 | 100 | 14 | 0 | 3 | 102 | 55 | 154 | 1.83e-60 | 186 |
| MS.gene91259.t1 | MTR_2g084425 | 69.079 | 152 | 13 | 2 | 3 | 125 | 221 | 367 | 6.18e-57 | 193 |
| MS.gene91259.t1 | MTR_2g084425 | 69.079 | 152 | 13 | 2 | 3 | 125 | 221 | 367 | 7.68e-57 | 193 |
| MS.gene91259.t1 | MTR_2g072760 | 58.779 | 131 | 22 | 1 | 3 | 101 | 5 | 135 | 5.09e-44 | 144 |
| MS.gene91259.t1 | MTR_3g009890 | 78.571 | 56 | 12 | 0 | 155 | 210 | 156 | 211 | 8.17e-22 | 90.5 |
| MS.gene91259.t1 | MTR_7g102610 | 29.134 | 127 | 65 | 1 | 6 | 107 | 246 | 372 | 1.02e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91259.t1 | AT2G27980 | 39.490 | 157 | 65 | 2 | 6 | 133 | 375 | 530 | 5.46e-27 | 108 |
Find 55 sgRNAs with CRISPR-Local
Find 115 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTCTGGCTACTGGGATTC+TGG | 0.255622 | 2.3:+13726673 | MS.gene91259:CDS |
| AGAGGATGCGCTCTTGGTTT+CGG | 0.354013 | 2.3:+13727442 | MS.gene91259:CDS |
| TGTCAAGGTGAAGGATCTTC+TGG | 0.356510 | 2.3:+13726658 | MS.gene91259:CDS |
| AGTGTCTGTGCTGGACTAAT+TGG | 0.366436 | 2.3:-13728370 | None:intergenic |
| GTGAAGGATCTTCTGGCTAC+TGG | 0.382782 | 2.3:+13726665 | MS.gene91259:CDS |
| TGAAATCACCCAGGACCATT+TGG | 0.397269 | 2.3:-13727192 | None:intergenic |
| TGAGAATGGAAAACTCCTTC+GGG | 0.415866 | 2.3:+13727117 | MS.gene91259:CDS |
| GATTATACTTACCTTGAGAA+TGG | 0.429569 | 2.3:+13727103 | MS.gene91259:CDS |
| AAAAGAAGAGGATGCGCTCT+TGG | 0.439362 | 2.3:+13727436 | MS.gene91259:CDS |
| ACTTCTTCCAAGAAAATAAG+AGG | 0.454192 | 2.3:+13727517 | MS.gene91259:CDS |
| TTGAGAATGGAAAACTCCTT+CGG | 0.454228 | 2.3:+13727116 | MS.gene91259:CDS |
| AGAAGATCCTTCACCTTGAC+AGG | 0.462800 | 2.3:-13726656 | None:intergenic |
| ATCCAACGGAAGACTTGAAC+AGG | 0.468127 | 2.3:-13727152 | None:intergenic |
| GTCTCTTTCAACTCCATGCA+TGG | 0.468548 | 2.3:-13727391 | None:intergenic |
| ATATATAGTCACGGTGGACC+TGG | 0.469482 | 2.3:+13728438 | MS.gene91259:CDS |
| TAAAGAGGTCCAAATGGTCC+TGG | 0.476200 | 2.3:+13727183 | MS.gene91259:CDS |
| TTATGGTGAAGCCTGGTAAG+AGG | 0.482687 | 2.3:+13726630 | None:intergenic |
| TCAGTGCATGGAACAATTGA+CGG | 0.496206 | 2.3:+13728400 | MS.gene91259:CDS |
| GTTGGATACATTGGATAAAG+AGG | 0.497086 | 2.3:+13727168 | MS.gene91259:CDS |
| GAGATATGTCAAGGGACATA+AGG | 0.497217 | 2.3:+13726709 | MS.gene91259:CDS |
| AAGTCTTCCGTTGGATACAT+TGG | 0.504489 | 2.3:+13727159 | MS.gene91259:CDS |
| TTCTCAAGGTAAGTATAATC+CGG | 0.505601 | 2.3:-13727100 | None:intergenic |
| ATTGGATAAAGAGGTCCAAA+TGG | 0.516952 | 2.3:+13727177 | MS.gene91259:CDS |
| CTGGCTACTGGGATTCTGGA+GGG | 0.517418 | 2.3:+13726677 | MS.gene91259:CDS |
| TCGCGGATTATGGTGAAGCC+TGG | 0.518339 | 2.3:+13726623 | None:intergenic |
| TAGTGCTAGTAAACGTCCTC+CGG | 0.529930 | 2.3:+13727081 | MS.gene91259:CDS |
| TGCCTGTTCAAGTCTTCCGT+TGG | 0.532331 | 2.3:+13727150 | MS.gene91259:CDS |
| TTGACAGGAAACCTCTTACC+AGG | 0.534154 | 2.3:-13726641 | None:intergenic |
| TGAAGGATCTTCTGGCTACT+GGG | 0.535951 | 2.3:+13726666 | MS.gene91259:CDS |
| AATATTTGTTTCAACTGCAG+AGG | 0.546957 | 2.3:+13727229 | MS.gene91259:CDS |
| TGGTAAGAGGTTTCCTGTCA+AGG | 0.557637 | 2.3:+13726643 | MS.gene91259:CDS |
| TCTGGCTACTGGGATTCTGG+AGG | 0.573761 | 2.3:+13726676 | MS.gene91259:CDS |
| ATTGAAAGTGAGATATGTCA+AGG | 0.573844 | 2.3:+13726700 | MS.gene91259:CDS |
| GTCAATTTCTGAATCTAACA+AGG | 0.573857 | 2.3:+13727345 | MS.gene91259:CDS |
| GAAGAACCGAGTGTCTGTGC+TGG | 0.576107 | 2.3:-13728379 | None:intergenic |
| CAGTGCATGGAACAATTGAC+GGG | 0.580953 | 2.3:+13728401 | MS.gene91259:CDS |
| GAGTTGAAAGAGACTTCTGC+AGG | 0.582564 | 2.3:+13727400 | MS.gene91259:CDS |
| CTGGGTTCTGAACAGCTGAA+AGG | 0.586271 | 2.3:+13728457 | MS.gene91259:CDS |
| TATATAGTCACGGTGGACCT+GGG | 0.588733 | 2.3:+13728439 | MS.gene91259:CDS |
| ACTAGTATGCAATCCATGCA+TGG | 0.592882 | 2.3:+13727378 | MS.gene91259:CDS |
| ACTTCTTCCAAGAAAAGAAG+AGG | 0.593684 | 2.3:+13727424 | MS.gene91259:CDS |
| AAAGAGGTCCAAATGGTCCT+GGG | 0.599169 | 2.3:+13727184 | MS.gene91259:CDS |
| GAGGTTTCCTGTCAAGGTGA+AGG | 0.604010 | 2.3:+13726649 | MS.gene91259:CDS |
| CTTTCAGCTGTTCAGAACCC+AGG | 0.626176 | 2.3:-13728456 | None:intergenic |
| ATTGACGGGAAATTTGATGA+CGG | 0.626327 | 2.3:+13728415 | MS.gene91259:CDS |
| ACACTCGGTTCTTCAGTGCA+TGG | 0.628634 | 2.3:+13728388 | MS.gene91259:CDS |
| ATTAGTCCAGCACAGACACT+CGG | 0.635032 | 2.3:+13728373 | MS.gene91259:CDS |
| TCTTTATCCAATGTATCCAA+CGG | 0.644524 | 2.3:-13727166 | None:intergenic |
| TCAATTTCTGAATCTAACAA+GGG | 0.669663 | 2.3:+13727346 | MS.gene91259:CDS |
| TTGAAAGTGAGATATGTCAA+GGG | 0.671458 | 2.3:+13726701 | MS.gene91259:CDS |
| TGATGACGGATATATAGTCA+CGG | 0.676944 | 2.3:+13728429 | MS.gene91259:CDS |
| AGGCATTCATGACATCCCGA+AGG | 0.693693 | 2.3:-13727132 | None:intergenic |
| TCAAGGTAAGTATAATCCGG+AGG | 0.695456 | 2.3:-13727097 | None:intergenic |
| ACTGCATTGTGAAATCACCC+AGG | 0.736544 | 2.3:-13727201 | None:intergenic |
| TGACGGATATATAGTCACGG+TGG | 0.799576 | 2.3:+13728432 | MS.gene91259:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTACAAGTTTAATCAAA+AGG | - | chr2.3:13727307-13727326 | None:intergenic | 15.0% |
| !!! | GTTTTGAACTTTTTTGATTT+TGG | + | chr2.3:13726738-13726757 | MS.gene91259:intron | 20.0% |
| ! | AACAAAGTTCTTATCTATGT+TGG | + | chr2.3:13728287-13728306 | MS.gene91259:intron | 25.0% |
| ! | AACTAATGGAAACAACTTAT+AGG | + | chr2.3:13728133-13728152 | MS.gene91259:intron | 25.0% |
| ! | ATTATGACATCGTTTAATCT+GGG | + | chr2.3:13727948-13727967 | MS.gene91259:intron | 25.0% |
| ! | TCAAAAAATAAGAGAGAAGA+AGG | + | chr2.3:13727466-13727485 | MS.gene91259:CDS | 25.0% |
| ! | TCAATTTCTGAATCTAACAA+GGG | + | chr2.3:13727346-13727365 | MS.gene91259:CDS | 25.0% |
| ! | TTTATTCGTAAATGATGTGT+AGG | + | chr2.3:13726832-13726851 | MS.gene91259:intron | 25.0% |
| !! | TCGTTTCTTTAATTTAGACT+TGG | + | chr2.3:13727851-13727870 | MS.gene91259:intron | 25.0% |
| !! | TGAAATATTTTTCTGTGATG+TGG | + | chr2.3:13727690-13727709 | MS.gene91259:intron | 25.0% |
| !!! | AATTTTGATGAACTGTTTGT+AGG | + | chr2.3:13727322-13727341 | MS.gene91259:intron | 25.0% |
| !!! | ATTGTTTTTTTTGCTTGTGT+GGG | + | chr2.3:13726963-13726982 | MS.gene91259:intron | 25.0% |
| !!! | ATTTTGATGAACTGTTTGTA+GGG | + | chr2.3:13727323-13727342 | MS.gene91259:intron | 25.0% |
| !!! | GATATTTGATTGACTTCTTT+TGG | + | chr2.3:13727732-13727751 | MS.gene91259:intron | 25.0% |
| !!! | TATTGTTTTTTTTGCTTGTG+TGG | + | chr2.3:13726962-13726981 | MS.gene91259:intron | 25.0% |
| !!! | TGATTCTTTTGTTTTGAAAC+TGG | + | chr2.3:13727795-13727814 | MS.gene91259:intron | 25.0% |
| !!! | TGTAATACCTCTTATTTTCT+TGG | - | chr2.3:13727527-13727546 | None:intergenic | 25.0% |
| AATATTTGTTTCAACTGCAG+AGG | + | chr2.3:13727229-13727248 | MS.gene91259:CDS | 30.0% | |
| ACTTCTTCCAAGAAAATAAG+AGG | + | chr2.3:13727517-13727536 | MS.gene91259:CDS | 30.0% | |
| AGAAACGAATCATCTATGAA+TGG | - | chr2.3:13727839-13727858 | None:intergenic | 30.0% | |
| ATTGAAAGTGAGATATGTCA+AGG | + | chr2.3:13726700-13726719 | MS.gene91259:CDS | 30.0% | |
| CATTATGACATCGTTTAATC+TGG | + | chr2.3:13727947-13727966 | MS.gene91259:intron | 30.0% | |
| GATTATACTTACCTTGAGAA+TGG | + | chr2.3:13727103-13727122 | MS.gene91259:CDS | 30.0% | |
| GGACGTATAGTCAATATTAT+TGG | - | chr2.3:13727596-13727615 | None:intergenic | 30.0% | |
| GTCAATTTCTGAATCTAACA+AGG | + | chr2.3:13727345-13727364 | MS.gene91259:CDS | 30.0% | |
| GTGAAATTGAGAATGATGTT+CGG | + | chr2.3:13726769-13726788 | MS.gene91259:intron | 30.0% | |
| TCTTTATCCAATGTATCCAA+CGG | - | chr2.3:13727169-13727188 | None:intergenic | 30.0% | |
| TTCTCAAGGTAAGTATAATC+CGG | - | chr2.3:13727103-13727122 | None:intergenic | 30.0% | |
| TTGAAAGTGAGATATGTCAA+GGG | + | chr2.3:13726701-13726720 | MS.gene91259:CDS | 30.0% | |
| !!! | GAACTTTTTTGATTTTGGTC+TGG | + | chr2.3:13726743-13726762 | MS.gene91259:intron | 30.0% |
| !!! | GGATTTTTTTTGCTATCTTG+TGG | + | chr2.3:13726790-13726809 | MS.gene91259:intron | 30.0% |
| !!! | TGTTGTTTTTTGTTGAGAGT+AGG | + | chr2.3:13727024-13727043 | MS.gene91259:intron | 30.0% |
| !!! | TTCTGCAGAAGTAGTTTTTT+CGG | - | chr2.3:13727497-13727516 | None:intergenic | 30.0% |
| AAACTCTCCTAGAGAACTAA+TGG | + | chr2.3:13728119-13728138 | MS.gene91259:intron | 35.0% | |
| AATTACATAGTGTCACAGCT+AGG | - | chr2.3:13727278-13727297 | None:intergenic | 35.0% | |
| ACAAGGTGTGATCAAAGATT+CGG | + | chr2.3:13726880-13726899 | MS.gene91259:intron | 35.0% | |
| ACTTCTTCCAAGAAAAGAAG+AGG | + | chr2.3:13727424-13727443 | MS.gene91259:CDS | 35.0% | |
| ATGTATACCCTAACTCATGA+TGG | - | chr2.3:13727617-13727636 | None:intergenic | 35.0% | |
| ATTGACGGGAAATTTGATGA+CGG | + | chr2.3:13728415-13728434 | MS.gene91259:CDS | 35.0% | |
| ATTGGATAAAGAGGTCCAAA+TGG | + | chr2.3:13727177-13727196 | MS.gene91259:CDS | 35.0% | |
| ATTTACTGCCATAAGCACAT+AGG | + | chr2.3:13728022-13728041 | MS.gene91259:intron | 35.0% | |
| GCATGCAACTCAAAAACATT+CGG | - | chr2.3:13727058-13727077 | None:intergenic | 35.0% | |
| GTTGGATACATTGGATAAAG+AGG | + | chr2.3:13727168-13727187 | MS.gene91259:CDS | 35.0% | |
| TATACGTCCATCATGAGTTA+GGG | + | chr2.3:13727607-13727626 | MS.gene91259:intron | 35.0% | |
| TCTATCATAAGTTGTGTCGA+TGG | - | chr2.3:13727926-13727945 | None:intergenic | 35.0% | |
| TTGAGAATGGAAAACTCCTT+CGG | + | chr2.3:13727116-13727135 | MS.gene91259:CDS | 35.0% | |
| ! | GTTGTTTCCATTAGTTCTCT+AGG | - | chr2.3:13728129-13728148 | None:intergenic | 35.0% |
| !! | TGATGACGGATATATAGTCA+CGG | + | chr2.3:13728429-13728448 | MS.gene91259:CDS | 35.0% |
| !!! | AATGTTTTTGAGTTGCATGC+TGG | + | chr2.3:13727058-13727077 | MS.gene91259:CDS | 35.0% |
| AACAGTCACCTATGTGCTTA+TGG | - | chr2.3:13728033-13728052 | None:intergenic | 40.0% | |
| AAGCACATAGGTGACTGTTT+GGG | + | chr2.3:13728034-13728053 | MS.gene91259:intron | 40.0% | |
| AAGTCTTCCGTTGGATACAT+TGG | + | chr2.3:13727159-13727178 | MS.gene91259:CDS | 40.0% | |
| ACTAGTATGCAATCCATGCA+TGG | + | chr2.3:13727378-13727397 | MS.gene91259:CDS | 40.0% | |
| CAAGGTGTGATCAAAGATTC+GGG | + | chr2.3:13726881-13726900 | MS.gene91259:intron | 40.0% | |
| CTATACGTCCATCATGAGTT+AGG | + | chr2.3:13727606-13727625 | MS.gene91259:intron | 40.0% | |
| GAATCAGGCAAGTAAATGGA+GGG | + | chr2.3:13726934-13726953 | MS.gene91259:intron | 40.0% | |
| GAGATATGTCAAGGGACATA+AGG | + | chr2.3:13726709-13726728 | MS.gene91259:CDS | 40.0% | |
| GTGATGTGGAAATAGAAGCA+AGG | + | chr2.3:13727704-13727723 | MS.gene91259:intron | 40.0% | |
| TAAGCACATAGGTGACTGTT+TGG | + | chr2.3:13728033-13728052 | MS.gene91259:intron | 40.0% | |
| TCAAGGTAAGTATAATCCGG+AGG | - | chr2.3:13727100-13727119 | None:intergenic | 40.0% | |
| TCAGTGCATGGAACAATTGA+CGG | + | chr2.3:13728400-13728419 | MS.gene91259:CDS | 40.0% | |
| TGAGAATGGAAAACTCCTTC+GGG | + | chr2.3:13727117-13727136 | MS.gene91259:CDS | 40.0% | |
| TTGGGAGAGCTTATGGATAT+TGG | + | chr2.3:13728052-13728071 | MS.gene91259:intron | 40.0% | |
| ! | ATCGAAAGCTTTATCGCACT+AGG | - | chr2.3:13727986-13728005 | None:intergenic | 40.0% |
| ! | CCTTGTAAATCCTTTTCTCC+CGG | - | chr2.3:13726866-13726885 | None:intergenic | 40.0% |
| ! | CGGGTATTTTGTGCTTTTGT+GGG | + | chr2.3:13726900-13726919 | MS.gene91259:intron | 40.0% |
| ! | GAAGGAGTTTTCCATTCTCA+AGG | - | chr2.3:13727117-13727136 | None:intergenic | 40.0% |
| ! | TCGGGTATTTTGTGCTTTTG+TGG | + | chr2.3:13726899-13726918 | MS.gene91259:intron | 40.0% |
| ! | TGCTTTTGTGGGAGTTGTAA+GGG | + | chr2.3:13726911-13726930 | MS.gene91259:intron | 40.0% |
| !!! | GCAGAAGTAGTTTTTTCGGA+AGG | - | chr2.3:13727493-13727512 | None:intergenic | 40.0% |
| AAAAGAAGAGGATGCGCTCT+TGG | + | chr2.3:13727436-13727455 | MS.gene91259:CDS | 45.0% | |
| AAAGAGGTCCAAATGGTCCT+GGG | + | chr2.3:13727184-13727203 | MS.gene91259:CDS | 45.0% | |
| ACTGCATTGTGAAATCACCC+AGG | - | chr2.3:13727204-13727223 | None:intergenic | 45.0% | |
| AGAAGATCCTTCACCTTGAC+AGG | - | chr2.3:13726659-13726678 | None:intergenic | 45.0% | |
| AGGGGAATCAGGCAAGTAAA+TGG | + | chr2.3:13726930-13726949 | MS.gene91259:intron | 45.0% | |
| AGTGTCTGTGCTGGACTAAT+TGG | - | chr2.3:13728373-13728392 | None:intergenic | 45.0% | |
| ATATATAGTCACGGTGGACC+TGG | + | chr2.3:13728438-13728457 | MS.gene91259:CDS | 45.0% | |
| ATCCAACGGAAGACTTGAAC+AGG | - | chr2.3:13727155-13727174 | None:intergenic | 45.0% | |
| ATTAGTCCAGCACAGACACT+CGG | + | chr2.3:13728373-13728392 | MS.gene91259:CDS | 45.0% | |
| CAGTGCATGGAACAATTGAC+GGG | + | chr2.3:13728401-13728420 | MS.gene91259:CDS | 45.0% | |
| CCGGGAGAAAAGGATTTACA+AGG | + | chr2.3:13726863-13726882 | MS.gene91259:intron | 45.0% | |
| GAGTTGAAAGAGACTTCTGC+AGG | + | chr2.3:13727400-13727419 | MS.gene91259:CDS | 45.0% | |
| GGAATCAGGCAAGTAAATGG+AGG | + | chr2.3:13726933-13726952 | MS.gene91259:intron | 45.0% | |
| GTCTCTTTCAACTCCATGCA+TGG | - | chr2.3:13727394-13727413 | None:intergenic | 45.0% | |
| GTGTGGGTTTAGCATCTTGT+AGG | + | chr2.3:13726979-13726998 | MS.gene91259:intron | 45.0% | |
| TAAAGAGGTCCAAATGGTCC+TGG | + | chr2.3:13727183-13727202 | MS.gene91259:CDS | 45.0% | |
| TAGTGCTAGTAAACGTCCTC+CGG | + | chr2.3:13727081-13727100 | MS.gene91259:CDS | 45.0% | |
| TATATAGTCACGGTGGACCT+GGG | + | chr2.3:13728439-13728458 | MS.gene91259:CDS | 45.0% | |
| TGAAATCACCCAGGACCATT+TGG | - | chr2.3:13727195-13727214 | None:intergenic | 45.0% | |
| TGACTGTTTGGGAGAGCTTA+TGG | + | chr2.3:13728045-13728064 | MS.gene91259:intron | 45.0% | |
| TGGTAAGAGGTTTCCTGTCA+AGG | + | chr2.3:13726643-13726662 | MS.gene91259:CDS | 45.0% | |
| TGTCAAGGTGAAGGATCTTC+TGG | + | chr2.3:13726658-13726677 | MS.gene91259:CDS | 45.0% | |
| TTGACAGGAAACCTCTTACC+AGG | - | chr2.3:13726644-13726663 | None:intergenic | 45.0% | |
| ! | AGCGCATCCTCTTCTTTTCT+TGG | - | chr2.3:13727434-13727453 | None:intergenic | 45.0% |
| ! | GCTTTTGTGGGAGTTGTAAG+GGG | + | chr2.3:13726912-13726931 | MS.gene91259:intron | 45.0% |
| ! | GTGCTTTTGTGGGAGTTGTA+AGG | + | chr2.3:13726910-13726929 | MS.gene91259:intron | 45.0% |
| ! | TGAAGGATCTTCTGGCTACT+GGG | + | chr2.3:13726666-13726685 | MS.gene91259:CDS | 45.0% |
| ! | TGACGGATATATAGTCACGG+TGG | + | chr2.3:13728432-13728451 | MS.gene91259:CDS | 45.0% |
| ACACTCGGTTCTTCAGTGCA+TGG | + | chr2.3:13728388-13728407 | MS.gene91259:CDS | 50.0% | |
| AGAGGATGCGCTCTTGGTTT+CGG | + | chr2.3:13727442-13727461 | MS.gene91259:CDS | 50.0% | |
| AGGCATTCATGACATCCCGA+AGG | - | chr2.3:13727135-13727154 | None:intergenic | 50.0% | |
| CAGGCAAGTAAATGGAGGGA+TGG | + | chr2.3:13726938-13726957 | MS.gene91259:intron | 50.0% | |
| CTTTCAGCTGTTCAGAACCC+AGG | - | chr2.3:13728459-13728478 | None:intergenic | 50.0% | |
| GAGGTTTCCTGTCAAGGTGA+AGG | + | chr2.3:13726649-13726668 | MS.gene91259:CDS | 50.0% | |
| TGATGTGTAGGCGCGTAAAC+CGG | + | chr2.3:13726844-13726863 | MS.gene91259:intron | 50.0% | |
| TGCCTGTTCAAGTCTTCCGT+TGG | + | chr2.3:13727150-13727169 | MS.gene91259:CDS | 50.0% | |
| TGGGAGTTGTAAGGGGAATC+AGG | + | chr2.3:13726919-13726938 | MS.gene91259:intron | 50.0% | |
| ! | GTGAAGGATCTTCTGGCTAC+TGG | + | chr2.3:13726665-13726684 | MS.gene91259:CDS | 50.0% |
| ! | TCTTCTGGCTACTGGGATTC+TGG | + | chr2.3:13726673-13726692 | MS.gene91259:CDS | 50.0% |
| !! | CTGGGTTCTGAACAGCTGAA+AGG | + | chr2.3:13728457-13728476 | MS.gene91259:CDS | 50.0% |
| CTGGCTACTGGGATTCTGGA+GGG | + | chr2.3:13726677-13726696 | MS.gene91259:CDS | 55.0% | |
| GAAGAACCGAGTGTCTGTGC+TGG | - | chr2.3:13728382-13728401 | None:intergenic | 55.0% | |
| GATGTGTAGGCGCGTAAACC+GGG | + | chr2.3:13726845-13726864 | MS.gene91259:intron | 55.0% | |
| TCTGGCTACTGGGATTCTGG+AGG | + | chr2.3:13726676-13726695 | MS.gene91259:CDS | 55.0% | |
| GGCGCGTAAACCGGGAGAAA+AGG | + | chr2.3:13726853-13726872 | MS.gene91259:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.3 | gene | 13726632 | 13728498 | 13726632 | ID=MS.gene91259 |
| chr2.3 | mRNA | 13726632 | 13728498 | 13726632 | ID=MS.gene91259.t1;Parent=MS.gene91259 |
| chr2.3 | exon | 13726632 | 13726730 | 13726632 | ID=MS.gene91259.t1.exon1;Parent=MS.gene91259.t1 |
| chr2.3 | CDS | 13726632 | 13726730 | 13726632 | ID=cds.MS.gene91259.t1;Parent=MS.gene91259.t1 |
| chr2.3 | exon | 13727046 | 13727250 | 13727046 | ID=MS.gene91259.t1.exon2;Parent=MS.gene91259.t1 |
| chr2.3 | CDS | 13727046 | 13727250 | 13727046 | ID=cds.MS.gene91259.t1;Parent=MS.gene91259.t1 |
| chr2.3 | exon | 13727344 | 13727538 | 13727344 | ID=MS.gene91259.t1.exon3;Parent=MS.gene91259.t1 |
| chr2.3 | CDS | 13727344 | 13727538 | 13727344 | ID=cds.MS.gene91259.t1;Parent=MS.gene91259.t1 |
| chr2.3 | exon | 13728365 | 13728498 | 13728365 | ID=MS.gene91259.t1.exon4;Parent=MS.gene91259.t1 |
| chr2.3 | CDS | 13728365 | 13728498 | 13728365 | ID=cds.MS.gene91259.t1;Parent=MS.gene91259.t1 |
| Gene Sequence |
| Protein sequence |
