Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91281.t1 | XP_013470010.1 | 80.3 | 851 | 54 | 3 | 1 | 737 | 1 | 851 | 0.00E+00 | 1132.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91281.t1 | P48786 | 45.5 | 492 | 207 | 12 | 167 | 618 | 524 | 994 | 2.2e-94 | 348.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91281.t1 | A0A072VRI3 | 80.3 | 851 | 54 | 3 | 1 | 737 | 1 | 851 | 0.0e+00 | 1132.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene91281.t1 | TF | HB-PHD |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene91281 | 0.808194 | 3.49E-50 | -1.69E-46 |
| MS.gene049159 | MS.gene91281 | 0.810039 | 1.41E-50 | -1.69E-46 |
| MS.gene051198 | MS.gene91281 | 0.802871 | 4.57E-49 | -1.69E-46 |
| MS.gene053008 | MS.gene91281 | 0.848943 | 4.44E-60 | -1.69E-46 |
| MS.gene053079 | MS.gene91281 | 0.802261 | 6.10E-49 | -1.69E-46 |
| MS.gene054775 | MS.gene91281 | 0.803088 | 4.12E-49 | -1.69E-46 |
| MS.gene054943 | MS.gene91281 | 0.81502 | 1.15E-51 | -1.69E-46 |
| MS.gene055513 | MS.gene91281 | 0.818014 | 2.45E-52 | -1.69E-46 |
| MS.gene055926 | MS.gene91281 | 0.816067 | 6.70E-52 | -1.69E-46 |
| MS.gene056045 | MS.gene91281 | 0.800822 | 1.20E-48 | -1.69E-46 |
| MS.gene056308 | MS.gene91281 | 0.804 | 2.67E-49 | -1.69E-46 |
| MS.gene057034 | MS.gene91281 | 0.806914 | 6.53E-50 | -1.69E-46 |
| MS.gene058146 | MS.gene91281 | 0.80377 | 2.97E-49 | -1.69E-46 |
| MS.gene059570 | MS.gene91281 | 0.819215 | 1.31E-52 | -1.69E-46 |
| MS.gene059725 | MS.gene91281 | 0.81788 | 2.62E-52 | -1.69E-46 |
| MS.gene060296 | MS.gene91281 | 0.848676 | 5.27E-60 | -1.69E-46 |
| MS.gene060802 | MS.gene91281 | 0.806507 | 7.95E-50 | -1.69E-46 |
| MS.gene060803 | MS.gene91281 | 0.801908 | 7.21E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91281.t1 | MTR_1g107015 | 92.881 | 604 | 33 | 3 | 133 | 729 | 243 | 843 | 0.0 | 1068 |
| MS.gene91281.t1 | MTR_1g107015 | 95.804 | 143 | 6 | 0 | 1 | 143 | 1 | 143 | 3.06e-81 | 277 |
| MS.gene91281.t1 | MTR_1g107015 | 92.881 | 604 | 33 | 3 | 133 | 729 | 218 | 818 | 0.0 | 1066 |
| MS.gene91281.t1 | MTR_1g107015 | 94.915 | 118 | 6 | 0 | 26 | 143 | 1 | 118 | 1.04e-63 | 228 |
| MS.gene91281.t1 | MTR_1g107015 | 92.881 | 604 | 33 | 3 | 133 | 729 | 318 | 918 | 0.0 | 1065 |
| MS.gene91281.t1 | MTR_1g107015 | 93.706 | 143 | 9 | 0 | 1 | 143 | 76 | 218 | 1.00e-78 | 271 |
| MS.gene91281.t1 | MTR_2g038000 | 30.464 | 453 | 216 | 10 | 168 | 612 | 172 | 533 | 1.04e-53 | 197 |
| MS.gene91281.t1 | MTR_6g453220 | 50.000 | 102 | 34 | 4 | 101 | 196 | 50 | 140 | 2.94e-15 | 79.7 |
| MS.gene91281.t1 | MTR_6g453210 | 75.610 | 41 | 10 | 0 | 1 | 41 | 73 | 113 | 1.70e-13 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91281.t1 | AT3G19510 | 44.576 | 507 | 219 | 14 | 146 | 612 | 183 | 667 | 1.89e-104 | 336 |
| MS.gene91281.t1 | AT3G19510 | 44.576 | 507 | 219 | 14 | 146 | 612 | 183 | 667 | 1.89e-104 | 336 |
| MS.gene91281.t1 | AT4G29940 | 41.808 | 177 | 95 | 2 | 139 | 308 | 102 | 277 | 4.44e-41 | 161 |
| MS.gene91281.t1 | AT4G29940 | 41.808 | 177 | 95 | 2 | 139 | 308 | 102 | 277 | 5.47e-41 | 161 |
Find 172 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGGGATCTATTTCAAAATT+TGG | 0.074634 | 1.3:+73282351 | MS.gene91281:CDS |
| GAGGATTTGACTCCAGTTTC+TGG | 0.158776 | 1.3:+73283638 | MS.gene91281:CDS |
| TTCAATCCTGTAATAAGATT+TGG | 0.213047 | 1.3:-73281729 | None:intergenic |
| GATGATGTTAAGAACTTTAA+AGG | 0.214262 | 1.3:+73283539 | MS.gene91281:CDS |
| TGGTGACCCTGGAGTTATTT+TGG | 0.234456 | 1.3:-73284201 | None:intergenic |
| GAACTTGTTAACGACTTGTT+AGG | 0.256613 | 1.3:+73282803 | MS.gene91281:CDS |
| TCAATCCTGTAATAAGATTT+GGG | 0.261891 | 1.3:-73281728 | None:intergenic |
| AGAAAGCTTGGCGCAAGAAC+TGG | 0.299690 | 1.3:+73284899 | MS.gene91281:CDS |
| TAATTTGCGTCGCAGAATTT+CGG | 0.302386 | 1.3:-73282323 | None:intergenic |
| GAGCTACTGGATCCACCTTC+TGG | 0.306748 | 1.3:+73280029 | MS.gene91281:CDS |
| AGCACCCCAAATCTTATTAC+AGG | 0.308418 | 1.3:+73281723 | MS.gene91281:intron |
| GACTTACTTCATACAGCTTT+TGG | 0.314803 | 1.3:-73283688 | None:intergenic |
| CTCAATCTTTGATTGCTTAC+CGG | 0.331704 | 1.3:+73290138 | MS.gene91281:CDS |
| GTCTCTCTCTTACTGATTCC+TGG | 0.333479 | 1.3:+73282831 | MS.gene91281:CDS |
| TCAGAATCAAACAAAGATTC+AGG | 0.338756 | 1.3:-73282400 | None:intergenic |
| TGTGCATCCTTCAAGTGTTT+TGG | 0.348033 | 1.3:-73284309 | None:intergenic |
| CCAGCAGCTGTAGCTGCTTC+GGG | 0.350968 | 1.3:-73283164 | None:intergenic |
| GGATCTTGCTGCTACAATTA+AGG | 0.352745 | 1.3:+73283472 | MS.gene91281:CDS |
| TCCAGCAGCTGTAGCTGCTT+CGG | 0.353688 | 1.3:-73283165 | None:intergenic |
| GAATTTGATTTCACTTGAAC+AGG | 0.365153 | 1.3:-73279999 | None:intergenic |
| GCCCGTTGAATCTCCTTCTC+TGG | 0.369302 | 1.3:-73282295 | None:intergenic |
| GACAGTTCATCGGTTATAGA+TGG | 0.390879 | 1.3:-73283587 | None:intergenic |
| TGAATCTTTGTTTGATTCTG+AGG | 0.392645 | 1.3:+73282402 | MS.gene91281:CDS |
| TTCGCATCCTCTGGAGCATC+AGG | 0.392731 | 1.3:-73283248 | None:intergenic |
| CCTTCAACCTTCGCATCCTC+TGG | 0.393078 | 1.3:-73283257 | None:intergenic |
| TTATAGGTTGACAAATGGTT+TGG | 0.393912 | 1.3:+73289791 | MS.gene91281:intron |
| CTTGAAGGATGCACAGAATC+TGG | 0.394345 | 1.3:+73284317 | MS.gene91281:CDS |
| GAGCTGAAAATAAAGGAGAT+AGG | 0.394447 | 1.3:+73289945 | MS.gene91281:CDS |
| GAGCAGGAACAGATTGTGTT+TGG | 0.396385 | 1.3:-73280127 | None:intergenic |
| GGACTAATGATTAGTTCAAC+TGG | 0.405013 | 1.3:+73279717 | None:intergenic |
| CCCGAAGCAGCTACAGCTGC+TGG | 0.412983 | 1.3:+73283164 | MS.gene91281:CDS |
| GACAGTGGAGCTGAAAATAA+AGG | 0.414026 | 1.3:+73289890 | MS.gene91281:CDS |
| GTATCTTTAGCACCAGGATT+GGG | 0.417924 | 1.3:-73283410 | None:intergenic |
| TGGGTATCACCAGCTCTGTT+TGG | 0.419475 | 1.3:+73282612 | MS.gene91281:CDS |
| AATCAAAGATTGAGCCGTTA+TGG | 0.420656 | 1.3:-73290129 | None:intergenic |
| AGGATTTGACTCCAGTTTCT+GGG | 0.422311 | 1.3:+73283639 | MS.gene91281:CDS |
| ACTTGGAGAAGCTGTTGTTC+AGG | 0.422804 | 1.3:+73284367 | MS.gene91281:CDS |
| TTATTTGAGGCGTTTCCATT+TGG | 0.424610 | 1.3:-73284221 | None:intergenic |
| GAAACGAGTGATGCAGTTAC+TGG | 0.424624 | 1.3:+73280092 | MS.gene91281:CDS |
| GATTTCACTTGAACAGGAAC+GGG | 0.425167 | 1.3:-73279993 | None:intergenic |
| CCAGAGGATGCGAAGGTTGA+AGG | 0.427357 | 1.3:+73283257 | MS.gene91281:CDS |
| TCTTTAGCAGAGCCAGATCT+TGG | 0.428193 | 1.3:+73283611 | MS.gene91281:CDS |
| TTTGATTGCTTACCGGTAGC+TGG | 0.429095 | 1.3:+73290145 | MS.gene91281:CDS |
| CATCATCACTAGTATCACTA+TGG | 0.433662 | 1.3:-73284130 | None:intergenic |
| ATGCTGATGGGTGTTCCTCT+TGG | 0.436575 | 1.3:-73284258 | None:intergenic |
| GATCCCGATGCTCCCAATCC+TGG | 0.436787 | 1.3:+73283398 | MS.gene91281:CDS |
| ATCTGCTTCTGAGAAATTTG+AGG | 0.440404 | 1.3:+73283313 | MS.gene91281:CDS |
| TTCTCAGTCGTAAAATCGTT+GGG | 0.440583 | 1.3:-73279753 | None:intergenic |
| CTCAGAGTCAGATGTGAAAT+CGG | 0.442930 | 1.3:-73283450 | None:intergenic |
| AAATTCTGTGAATGAGCTAC+TGG | 0.443097 | 1.3:+73280016 | MS.gene91281:CDS |
| CTCCCTTATAGGTTGACAAA+TGG | 0.447598 | 1.3:+73289786 | MS.gene91281:intron |
| GAAAGCGGAGCTGAAAATAA+AGG | 0.453174 | 1.3:+73289938 | MS.gene91281:CDS |
| ACTTGAACAGGAACGGGTTG+TGG | 0.457052 | 1.3:-73279987 | None:intergenic |
| TCACCCACCAAAACACTTGA+AGG | 0.460627 | 1.3:+73284302 | MS.gene91281:CDS |
| GAAAAGAAATGTTGAAAGGC+TGG | 0.463300 | 1.3:+73283661 | MS.gene91281:CDS |
| TCATCTTTGCAATCACATCC+TGG | 0.464187 | 1.3:-73282773 | None:intergenic |
| TAGTAGCCAACACTTTGGTC+TGG | 0.464284 | 1.3:-73282552 | None:intergenic |
| TCATGTAAGGAGGCCAGTCC+AGG | 0.466183 | 1.3:+73289842 | MS.gene91281:CDS |
| TACAGCTGCTGGAAGTATCT+TGG | 0.467307 | 1.3:+73283175 | MS.gene91281:CDS |
| AAACCCCAAGCTCGAAGAAA+AGG | 0.472897 | 1.3:+73290065 | MS.gene91281:CDS |
| TCAATACATGGGTCTTCCTT+CGG | 0.473784 | 1.3:+73283352 | MS.gene91281:CDS |
| GCACCAGGATTGGGAGCATC+GGG | 0.473958 | 1.3:-73283401 | None:intergenic |
| AGTATCTTTAGCACCAGGAT+TGG | 0.476428 | 1.3:-73283411 | None:intergenic |
| AAATCCTCTTCACCAAGATC+TGG | 0.477201 | 1.3:-73283623 | None:intergenic |
| GCGTTTCCATTTGGTGACCC+TGG | 0.477588 | 1.3:-73284212 | None:intergenic |
| TCTGAGAAATTTGAGGATCC+AGG | 0.479451 | 1.3:+73283320 | MS.gene91281:CDS |
| AACTTGTTAACGACTTGTTA+GGG | 0.483719 | 1.3:+73282804 | MS.gene91281:CDS |
| CTTCTCAGTCGTAAAATCGT+TGG | 0.484570 | 1.3:-73279754 | None:intergenic |
| ATGTATTGATCCTCATGGCC+TGG | 0.487322 | 1.3:-73283338 | None:intergenic |
| GCAGACATCTGAAGCAGGGC+TGG | 0.488443 | 1.3:+73290105 | MS.gene91281:CDS |
| AGCACCAGGATTGGGAGCAT+CGG | 0.491856 | 1.3:-73283402 | None:intergenic |
| GTTCCTCTTGGCAGTACGGC+GGG | 0.492474 | 1.3:-73284246 | None:intergenic |
| GAGCCGCAGACATCTGAAGC+AGG | 0.495421 | 1.3:+73290100 | MS.gene91281:CDS |
| AGGAGATAATGCTTCGCAGC+AGG | 0.495905 | 1.3:+73289910 | MS.gene91281:CDS |
| TCTCTCTCTTACTGATTCCT+GGG | 0.498409 | 1.3:+73282832 | MS.gene91281:CDS |
| TTATTGCTTGTGCCAGCTAC+CGG | 0.500696 | 1.3:-73290157 | None:intergenic |
| AAGTATCTTGGATCACAACC+TGG | 0.500741 | 1.3:+73283187 | MS.gene91281:CDS |
| AGCTGAAAATAAAGGAGATA+GGG | 0.501616 | 1.3:+73289946 | MS.gene91281:CDS |
| GACAGAGAACAAAGTGTGCT+TGG | 0.502185 | 1.3:+73279837 | MS.gene91281:CDS |
| ATAACTCCAGGGTCACCAAA+TGG | 0.504477 | 1.3:+73284206 | MS.gene91281:CDS |
| GGATCTTCATACAATAAACT+TGG | 0.506409 | 1.3:+73284350 | MS.gene91281:CDS |
| GCCAGAGAAGGAGATTCAAC+GGG | 0.508450 | 1.3:+73282294 | MS.gene91281:CDS |
| TACTAGTGATGATGAAGATT+GGG | 0.508913 | 1.3:+73284139 | MS.gene91281:CDS |
| GGGTGTTCCTCTTGGCAGTA+CGG | 0.509060 | 1.3:-73284250 | None:intergenic |
| GTTCCGACATTCATCATGTA+AGG | 0.513678 | 1.3:+73289829 | MS.gene91281:CDS |
| GAAAGCTTGGCGCAAGAACT+GGG | 0.514904 | 1.3:+73284900 | MS.gene91281:CDS |
| ACTGCATCTCTCATTTCGCC+AGG | 0.515178 | 1.3:-73279942 | None:intergenic |
| GCGTCGCAGAATTTCGGACT+TGG | 0.515667 | 1.3:-73282317 | None:intergenic |
| ATTATTAGTAGCCAACACTT+TGG | 0.517226 | 1.3:-73282557 | None:intergenic |
| ATACTAGTGATGATGAAGAT+TGG | 0.521341 | 1.3:+73284138 | MS.gene91281:CDS |
| CTGCGGCTTACAGTTCCACC+TGG | 0.522100 | 1.3:+73282731 | MS.gene91281:intron |
| GGTTTGGCAATTCTCGTTGG+AGG | 0.524613 | 1.3:+73289807 | MS.gene91281:CDS |
| TACAGTTCCACCTGGCGATG+AGG | 0.529326 | 1.3:+73282739 | MS.gene91281:intron |
| CATAACCAACCCTCATCGCC+AGG | 0.530946 | 1.3:-73282749 | None:intergenic |
| TGATTTCACTTGAACAGGAA+CGG | 0.534261 | 1.3:-73279994 | None:intergenic |
| CTGGGAAAAGAAATGTTGAA+AGG | 0.535766 | 1.3:+73283657 | MS.gene91281:CDS |
| TGGCATACACGGGATAAGCT+TGG | 0.538222 | 1.3:-73281778 | None:intergenic |
| AATGGTTTGGCAATTCTCGT+TGG | 0.540198 | 1.3:+73289804 | MS.gene91281:CDS |
| TTGGATTCGTTATGTGCTGA+AGG | 0.540214 | 1.3:+73282370 | MS.gene91281:CDS |
| AGTACGGCGGGAATTATTTG+AGG | 0.542860 | 1.3:-73284234 | None:intergenic |
| ACGGACCGCAAAAGAAAGCT+TGG | 0.543668 | 1.3:+73284887 | MS.gene91281:CDS |
| ATTCGTTATGTGCTGAAGGA+AGG | 0.544325 | 1.3:+73282374 | MS.gene91281:CDS |
| AATTCTGTTATTCAACTGCC+TGG | 0.546096 | 1.3:+73279924 | MS.gene91281:CDS |
| GAATCTTTGTTTGATTCTGA+GGG | 0.547335 | 1.3:+73282403 | MS.gene91281:CDS |
| AGGTAGTAATGCTTCACAGC+AGG | 0.547657 | 1.3:+73289862 | MS.gene91281:CDS |
| AGGCCATGAGGATCAATACA+TGG | 0.550655 | 1.3:+73283340 | MS.gene91281:CDS |
| AGAGCCAGATCTTGGTGAAG+AGG | 0.552428 | 1.3:+73283619 | MS.gene91281:CDS |
| TTCGCAACATCTCCAGAAGG+TGG | 0.552717 | 1.3:-73280041 | None:intergenic |
| TTGTGGTTGTTCTTCAACAA+GGG | 0.552863 | 1.3:-73279970 | None:intergenic |
| ACAGTTCCACCTGGCGATGA+GGG | 0.553392 | 1.3:+73282740 | MS.gene91281:intron |
| TTCCACCTGGCGATGAGGGT+TGG | 0.555753 | 1.3:+73282744 | MS.gene91281:CDS |
| AGCCAGAGAAGGAGATTCAA+CGG | 0.560164 | 1.3:+73282293 | MS.gene91281:CDS |
| TGTGATGGTGCTTGTGACCG+TGG | 0.564071 | 1.3:+73282592 | MS.gene91281:CDS |
| AGATGTGACATCATCTTGTC+CGG | 0.564545 | 1.3:-73283507 | None:intergenic |
| TCTTCAGTATCTTTAGCACC+AGG | 0.564626 | 1.3:-73283416 | None:intergenic |
| GGAGCATCAACTAGTTGCCC+AGG | 0.565317 | 1.3:+73290021 | MS.gene91281:CDS |
| TGCTGTGAAGCATTACTACC+TGG | 0.569191 | 1.3:-73289860 | None:intergenic |
| CATCTTTGCAATCACATCCT+GGG | 0.569916 | 1.3:-73282772 | None:intergenic |
| CAATCCTGTAATAAGATTTG+GGG | 0.570994 | 1.3:-73281727 | None:intergenic |
| CTGACCGCCAAAATAACTCC+AGG | 0.571543 | 1.3:+73284194 | MS.gene91281:CDS |
| ATTAGTTCTCAAAACGAACC+TGG | 0.572921 | 1.3:+73280068 | MS.gene91281:CDS |
| GACCCATGTATTGATCCTCA+TGG | 0.576189 | 1.3:-73283343 | None:intergenic |
| TCGCAGCAGGCCAGTGAAAG+CGG | 0.580172 | 1.3:+73289923 | MS.gene91281:CDS |
| GTGATGGTGCTTGTGACCGT+GGG | 0.581507 | 1.3:+73282593 | MS.gene91281:CDS |
| TCTACTTGGAGTAGCAGTGT+CGG | 0.582959 | 1.3:-73284162 | None:intergenic |
| TGATGTCACATCTGCACCGT+TGG | 0.585319 | 1.3:+73283517 | MS.gene91281:CDS |
| TGAAGCATTACTACCTGGAC+TGG | 0.585531 | 1.3:-73289855 | None:intergenic |
| TGTTCCTCTTGGCAGTACGG+CGG | 0.587710 | 1.3:-73284247 | None:intergenic |
| ATGGAGGATCCAAACAGAGC+TGG | 0.587853 | 1.3:-73282621 | None:intergenic |
| ATTGTGTTTGGTCTTCAACA+AGG | 0.590483 | 1.3:-73280115 | None:intergenic |
| GTTGTGGTTGTTCTTCAACA+AGG | 0.591435 | 1.3:-73279971 | None:intergenic |
| TCTTCCTTCGGAAGATTCAG+AGG | 0.592723 | 1.3:+73283364 | MS.gene91281:CDS |
| AAGAAAATCAATATCCAGAA+CGG | 0.595382 | 1.3:+73284868 | MS.gene91281:CDS |
| TGCTAAAGATGACAGTTCAT+CGG | 0.595530 | 1.3:-73283597 | None:intergenic |
| ACTGCATCACTCGTTTCACC+AGG | 0.602033 | 1.3:-73280086 | None:intergenic |
| TTACTGTCTTCAGTTAACAA+TGG | 0.602560 | 1.3:-73282640 | None:intergenic |
| CTGTCTTCAGTTAACAATGG+AGG | 0.604628 | 1.3:-73282637 | None:intergenic |
| TCGCAGCAAGCCACTGACAG+CGG | 0.604697 | 1.3:+73289977 | MS.gene91281:CDS |
| AGCCGCAGACATCTGAAGCA+GGG | 0.606461 | 1.3:+73290101 | MS.gene91281:CDS |
| AGGTGAAAACAAAGGAGAGA+CGG | 0.611195 | 1.3:+73290000 | MS.gene91281:CDS |
| AATGATATAATTCTCTGTGA+TGG | 0.615057 | 1.3:+73282577 | MS.gene91281:CDS |
| AATCATCTGAAGGAAGTCCC+AGG | 0.615967 | 1.3:-73283205 | None:intergenic |
| CCTCCTTACATGATGAATGT+CGG | 0.617098 | 1.3:-73289832 | None:intergenic |
| TCATCCTCTGAATCTTCCGA+AGG | 0.620563 | 1.3:-73283368 | None:intergenic |
| ATTAAGGATAACATGTCCAC+CGG | 0.621242 | 1.3:+73283488 | MS.gene91281:CDS |
| CGATTTCACATCTGACTCTG+AGG | 0.622480 | 1.3:+73283451 | MS.gene91281:CDS |
| GAAGCAGGGCTGGTCCATAA+CGG | 0.623774 | 1.3:+73290115 | MS.gene91281:CDS |
| CTAGTTGCCCAGGAGACAAG+TGG | 0.625230 | 1.3:+73290031 | MS.gene91281:CDS |
| TGAGGGAGAGATTGATAGCG+AGG | 0.625849 | 1.3:+73282420 | MS.gene91281:CDS |
| AAAATGCCAGACCAAAGTGT+TGG | 0.625899 | 1.3:+73282546 | MS.gene91281:CDS |
| CAGCAAGCCACTGACAGCGG+AGG | 0.628403 | 1.3:+73289980 | MS.gene91281:CDS |
| CTCTCTTACTGATTCCTGGG+AGG | 0.630007 | 1.3:+73282835 | MS.gene91281:CDS |
| TCATCGTCAGAATCATCTGA+AGG | 0.631384 | 1.3:-73283215 | None:intergenic |
| GCTGAAAATAAAGGAGATAG+GGG | 0.633536 | 1.3:+73289947 | MS.gene91281:CDS |
| TGATGCTCCAGAGGATGCGA+AGG | 0.634645 | 1.3:+73283250 | MS.gene91281:CDS |
| TCACAGCAGGCCAATGACAG+TGG | 0.635719 | 1.3:+73289875 | MS.gene91281:CDS |
| ACAAAGTGTGCTTGGTACTG+TGG | 0.637548 | 1.3:+73279845 | MS.gene91281:CDS |
| TTATAATCCTGATGCTCCAG+AGG | 0.638161 | 1.3:+73283241 | MS.gene91281:CDS |
| TGTGACATCATCTTGTCCGG+TGG | 0.646990 | 1.3:-73283504 | None:intergenic |
| AAGTTCTTAACATCATCCAA+CGG | 0.647331 | 1.3:-73283533 | None:intergenic |
| CCGACATTCATCATGTAAGG+AGG | 0.650409 | 1.3:+73289832 | MS.gene91281:CDS |
| GGCCATGAGGATCAATACAT+GGG | 0.661032 | 1.3:+73283341 | MS.gene91281:CDS |
| GATGAGGGTTGGTTATGCCC+AGG | 0.661408 | 1.3:+73282755 | MS.gene91281:CDS |
| AGTATCTTGGATCACAACCT+GGG | 0.671806 | 1.3:+73283188 | MS.gene91281:CDS |
| ATTTGAGGATCCAGGCCATG+AGG | 0.675316 | 1.3:+73283328 | MS.gene91281:CDS |
| GAGGATGCGAAGGTTGAAGG+AGG | 0.677573 | 1.3:+73283260 | MS.gene91281:CDS |
| TGACCGCCAAAATAACTCCA+GGG | 0.677588 | 1.3:+73284195 | MS.gene91281:CDS |
| AGCCCTGCTTCAGATGTCTG+CGG | 0.678843 | 1.3:-73290103 | None:intergenic |
| AACAGAGCTGGTGATACCCA+CGG | 0.684036 | 1.3:-73282609 | None:intergenic |
| ATTCCCGCCGTACTGCCAAG+AGG | 0.692868 | 1.3:+73284243 | MS.gene91281:CDS |
| GACAGCGGAGGTGAAAACAA+AGG | 0.703274 | 1.3:+73289992 | MS.gene91281:CDS |
| AACCAACCCTCATCGCCAGG+TGG | 0.710395 | 1.3:-73282746 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 73279723 | 73290204 | 73279723 | ID=MS.gene91281 |
| chr1.3 | mRNA | 73279723 | 73290204 | 73279723 | ID=MS.gene91281.t1;Parent=MS.gene91281 |
| chr1.3 | exon | 73279723 | 73280151 | 73279723 | ID=MS.gene91281.t1.exon1;Parent=MS.gene91281.t1 |
| chr1.3 | CDS | 73279723 | 73280151 | 73279723 | ID=cds.MS.gene91281.t1;Parent=MS.gene91281.t1 |
| chr1.3 | exon | 73281725 | 73281792 | 73281725 | ID=MS.gene91281.t1.exon2;Parent=MS.gene91281.t1 |
| chr1.3 | CDS | 73281725 | 73281792 | 73281725 | ID=cds.MS.gene91281.t1;Parent=MS.gene91281.t1 |
| chr1.3 | exon | 73282279 | 73282444 | 73282279 | ID=MS.gene91281.t1.exon3;Parent=MS.gene91281.t1 |
| chr1.3 | CDS | 73282279 | 73282444 | 73282279 | ID=cds.MS.gene91281.t1;Parent=MS.gene91281.t1 |
| chr1.3 | exon | 73282535 | 73282658 | 73282535 | ID=MS.gene91281.t1.exon4;Parent=MS.gene91281.t1 |
| chr1.3 | CDS | 73282535 | 73282658 | 73282535 | ID=cds.MS.gene91281.t1;Parent=MS.gene91281.t1 |
| chr1.3 | exon | 73282744 | 73282856 | 73282744 | ID=MS.gene91281.t1.exon5;Parent=MS.gene91281.t1 |
| chr1.3 | CDS | 73282744 | 73282856 | 73282744 | ID=cds.MS.gene91281.t1;Parent=MS.gene91281.t1 |
| chr1.3 | exon | 73283155 | 73283703 | 73283155 | ID=MS.gene91281.t1.exon6;Parent=MS.gene91281.t1 |
| chr1.3 | CDS | 73283155 | 73283703 | 73283155 | ID=cds.MS.gene91281.t1;Parent=MS.gene91281.t1 |
| chr1.3 | exon | 73284122 | 73284388 | 73284122 | ID=MS.gene91281.t1.exon7;Parent=MS.gene91281.t1 |
| chr1.3 | CDS | 73284122 | 73284388 | 73284122 | ID=cds.MS.gene91281.t1;Parent=MS.gene91281.t1 |
| chr1.3 | exon | 73284849 | 73284938 | 73284849 | ID=MS.gene91281.t1.exon8;Parent=MS.gene91281.t1 |
| chr1.3 | CDS | 73284849 | 73284938 | 73284849 | ID=cds.MS.gene91281.t1;Parent=MS.gene91281.t1 |
| chr1.3 | exon | 73289797 | 73290204 | 73289797 | ID=MS.gene91281.t1.exon9;Parent=MS.gene91281.t1 |
| chr1.3 | CDS | 73289797 | 73290204 | 73289797 | ID=cds.MS.gene91281.t1;Parent=MS.gene91281.t1 |
| Gene Sequence |
| Protein sequence |
