AlfalfaGEDB | MS.gene91309

M. sativa cultivar XinJiangDaYe / MS.gene91309

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene91309.t1	XP_013469983.1	92.1	76	6	0	1	76	38	113	1.80E-30	141.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene91309.t1	A0A072VQS7	92.1	76	6	0	1	76	38	113	1.3e-30	141.4

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050363	MS.gene91309	0.826457	2.68E-54	-1.69E-46
MS.gene051946	MS.gene91309	0.814711	1.34E-51	-1.69E-46
MS.gene053826	MS.gene91309	0.809592	1.75E-50	-1.69E-46
MS.gene055401	MS.gene91309	0.802646	5.08E-49	-1.69E-46
MS.gene055549	MS.gene91309	0.805672	1.19E-49	-1.69E-46
MS.gene055550	MS.gene91309	0.806941	6.44E-50	-1.69E-46
MS.gene056310	MS.gene91309	0.806582	7.67E-50	-1.69E-46
MS.gene056311	MS.gene91309	0.809611	1.74E-50	-1.69E-46
MS.gene056408	MS.gene91309	0.818108	2.33E-52	-1.69E-46
MS.gene057014	MS.gene91309	0.824282	8.78E-54	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene91309.t1	MTR_1g106215	92.105	76	6	0	1	76	38	113	2.95e-47	145

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 23 sgRNAs with CRISPR-Local

Find 22 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AATGTTGTTGAAATTCGTTG+AGG	0.696246	1.3:+72979136	None:intergenic
AGAAGCAGCAGCACTGGCAG+TGG	0.577609	1.3:+72979175	None:intergenic
AGACCTGGTTCTTCTATGAG+AGG	0.610651	1.3:+72979298	None:intergenic
AGCATAAGAAGCAGCAGCAC+TGG	0.414803	1.3:+72979169	None:intergenic
AGCTGTCACAATGATGCCTC+TGG	0.415269	1.3:+72979208	None:intergenic
ATGTTGTTGAAATTCGTTGA+GGG	0.532601	1.3:+72979137	None:intergenic
ATTTGGTAATGATGGAAGTT+TGG	0.326402	1.3:-72979237	MS.gene91309:CDS
CTGTCACAATGATGCCTCTG+GGG	0.650846	1.3:+72979210	None:intergenic
GAAATTCGTTGAGGGTGGTT+GGG	0.490978	1.3:+72979145	None:intergenic
GAGCACAGATTTGGTAATGA+TGG	0.406744	1.3:-72979245	MS.gene91309:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATGTTGTTGAAATTCGTTG+AGG	+	chr1.3:72979317-72979336	None:intergenic	30.0%
ATGTTGTTGAAATTCGTTGA+GGG	+	chr1.3:72979316-72979335	None:intergenic	30.0%
TTGGAATCTGACTCATTAAC+AGG	-	chr1.3:72979127-72979146	MS.gene91309:CDS	35.0%
GAGTTCTTAGAGCACAGATT+TGG	-	chr1.3:72979196-72979215	MS.gene91309:CDS	40.0%
TTGTTGAAATTCGTTGAGGG+TGG	+	chr1.3:72979313-72979332	None:intergenic	40.0%
GAAATTCGTTGAGGGTGGTT+GGG	+	chr1.3:72979308-72979327	None:intergenic	45.0%
GATCCTCTCATAGAAGAACC+AGG	-	chr1.3:72979149-72979168	MS.gene91309:CDS	45.0%
TGAAATTCGTTGAGGGTGGT+TGG	+	chr1.3:72979309-72979328	None:intergenic	45.0%
AGCATAAGAAGCAGCAGCAC+TGG	+	chr1.3:72979284-72979303	None:intergenic	50.0%
AGCTGTCACAATGATGCCTC+TGG	+	chr1.3:72979245-72979264	None:intergenic	50.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.3	gene	72979121	72979351	72979121	ID=MS.gene91309
chr1.3	mRNA	72979121	72979351	72979121	ID=MS.gene91309.t1;Parent=MS.gene91309
chr1.3	exon	72979121	72979351	72979121	ID=MS.gene91309.t1.exon1;Parent=MS.gene91309.t1
chr1.3	CDS	72979121	72979351	72979121	ID=cds.MS.gene91309.t1;Parent=MS.gene91309.t1

Gene Sequence	>MS.gene91309 ATGTTATTGGAATCTGACTCATTAACAGGATCCTCTCATAGAAGAACCAGGTCTGATTTTCAGCAACCCACAACTGAGTTCTTAGAGCACAGATTTGGTAATGATGGAAGTTTGGTTAGCCCCAGAGGCATCATTGTGACAGCTCTGCCTCCGACCACTGCCAGTGCTGCTGCTTCTTATGCTACCCAACCACCCTCAACGAATTTCAACAACATTCGCAAACACAAATGA
Protein sequence	>MS.gene91309.t1 MLLESDSLTGSSHRRTRSDFQQPTTEFLEHRFGNDGSLVSPRGIIVTALPPTTASAAASYATQPPSTNFNNIRKHK