AlfalfaGEDB | MS.gene91717

M. sativa cultivar XinJiangDaYe / MS.gene91717

KEGG: -
GO: GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0019538 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0071704 GO:0110165 GO:1901564 GO:1901566 GO:1901576
PFAM: PF03004.17

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene91717.t1	RDX87334.1	67.7	201	65	0	14	214	318	518	2.90E-72	282.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene91717.t1	P49690	96.0	25	1	0	313	337	116	140	6.8e-06	53.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene91717.t1	A0A371G9V1	67.7	201	65	0	14	214	318	518	2.1e-72	282.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050303	MS.gene91717	0.806208	9.20E-50	-1.69E-46
MS.gene050719	MS.gene91717	0.804538	2.06E-49	-1.69E-46
MS.gene050721	MS.gene91717	0.808547	2.94E-50	-1.69E-46
MS.gene052176	MS.gene91717	0.833429	5.36E-56	-1.69E-46
MS.gene052286	MS.gene91717	0.801071	1.07E-48	-1.69E-46
MS.gene052302	MS.gene91717	0.819398	1.19E-52	-1.69E-46
MS.gene052309	MS.gene91717	-0.80638	8.46E-50	-1.69E-46
MS.gene052358	MS.gene91717	-0.807835	4.16E-50	-1.69E-46
MS.gene052376	MS.gene91717	0.827392	1.60E-54	-1.69E-46
MS.gene052856	MS.gene91717	0.818651	1.75E-52	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene91717.t1	MTR_2g070580	65.986	147	30	3	191	337	1	127	4.71e-54	173
MS.gene91717.t1	MTR_8g019070	53.913	115	37	3	154	265	84	185	5.02e-26	103
MS.gene91717.t1	MTR_8g019070	86.000	50	7	0	13	62	25	74	1.32e-23	97.1
MS.gene91717.t1	MTR_1g006970	82.000	50	9	0	242	291	1	50	6.35e-14	65.9
MS.gene91717.t1	MTR_7g035425	32.283	127	78	3	18	139	214	337	1.88e-13	70.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 60 sgRNAs with CRISPR-Local

Find 114 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATGAACACATTGATGAAG+AGG	0.533356	7.2:+39091470	MS.gene91717:CDS
AACAAGAGAAGTTGCAGATG+AGG	0.489038	7.2:+39091328	MS.gene91717:CDS
AAGAAATTGCTCACATTATA+CGG	0.326347	7.2:+39090194	MS.gene91717:CDS
AAGTAAAACTCAGTCAACGA+CGG	0.749212	7.2:-39090774	None:intergenic
ACGTCGTCTCCCATCCAACT+TGG	0.544669	7.2:-39090513	None:intergenic
ACTATGAGTTTGGTATCTCA+GGG	0.606257	7.2:+39090052	None:intergenic
ACTGTTGGGGTTTAAAACAT+GGG	0.593401	7.2:-39091442	None:intergenic
AGAAATCGCAATTCTATGGC+TGG	0.511177	7.2:+39090600	MS.gene91717:CDS
AGATGAGGCAACAAATGCAA+CGG	0.644760	7.2:+39091343	MS.gene91717:CDS
AGTGTGTTGATCTTTGGCCT+AGG	0.508867	7.2:+39092003	MS.gene91717:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATGAACACATTGATGAAG+AGG	+	chr7.2:39091470-39091489	MS.gene91717:CDS	30.0%
AATCAGACAAAACAGTCAAA+AGG	-	chr7.2:39091895-39091914	None:intergenic	30.0%
AGAAATTCGGAAAAATTTGG+AGG	+	chr7.2:39090485-39090504	MS.gene91717:CDS	30.0%
ATGAGTCAAAGAAATCATCT+CGG	-	chr7.2:39090270-39090289	None:intergenic	30.0%
ATGCATATCACTATCCTATA+AGG	-	chr7.2:39090131-39090150	None:intergenic	30.0%
CAAACTAACAAAAAGATAGG+TGG	-	chr7.2:39091859-39091878	None:intergenic	30.0%
CTCAATTGATGCAAGAAATT+CGG	+	chr7.2:39090472-39090491	MS.gene91717:CDS	30.0%
GAAAAAAAAGGGAGGATATT+TGG	+	chr7.2:39091177-39091196	MS.gene91717:intron	30.0%
GCAAGAAATTCGGAAAAATT+TGG	+	chr7.2:39090482-39090501	MS.gene91717:CDS	30.0%
GCTGCTATTATGAAACATTT+GGG	+	chr7.2:39091402-39091421	MS.gene91717:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.2	gene	39090055	39092055	39090055	ID=MS.gene91717
chr7.2	mRNA	39090055	39092055	39090055	ID=MS.gene91717.t1;Parent=MS.gene91717
chr7.2	exon	39090055	39090092	39090055	ID=MS.gene91717.t1.exon1;Parent=MS.gene91717.t1
chr7.2	CDS	39090055	39090092	39090055	ID=cds.MS.gene91717.t1;Parent=MS.gene91717.t1
chr7.2	exon	39090168	39090294	39090168	ID=MS.gene91717.t1.exon2;Parent=MS.gene91717.t1
chr7.2	CDS	39090168	39090294	39090168	ID=cds.MS.gene91717.t1;Parent=MS.gene91717.t1
chr7.2	exon	39090396	39090677	39090396	ID=MS.gene91717.t1.exon3;Parent=MS.gene91717.t1
chr7.2	CDS	39090396	39090677	39090396	ID=cds.MS.gene91717.t1;Parent=MS.gene91717.t1
chr7.2	exon	39090753	39090854	39090753	ID=MS.gene91717.t1.exon4;Parent=MS.gene91717.t1
chr7.2	CDS	39090753	39090854	39090753	ID=cds.MS.gene91717.t1;Parent=MS.gene91717.t1
chr7.2	exon	39091044	39091129	39091044	ID=MS.gene91717.t1.exon5;Parent=MS.gene91717.t1
chr7.2	CDS	39091044	39091129	39091044	ID=cds.MS.gene91717.t1;Parent=MS.gene91717.t1
chr7.2	exon	39091323	39091618	39091323	ID=MS.gene91717.t1.exon6;Parent=MS.gene91717.t1
chr7.2	CDS	39091323	39091618	39091323	ID=cds.MS.gene91717.t1;Parent=MS.gene91717.t1
chr7.2	exon	39091973	39092055	39091973	ID=MS.gene91717.t1.exon7;Parent=MS.gene91717.t1
chr7.2	CDS	39091973	39092055	39091973	ID=cds.MS.gene91717.t1;Parent=MS.gene91717.t1

Gene Sequence

>MS.gene91717

ATGAGTTTGGTATCTCAGGGCCTGTTTGGACTGTTTCAGTTTACTTATTTGAACTTATTTATTGGAATAATTGCCTTATAGGATAGTGATATGCATATTTGACTTATTTTCAGGTTTGATCACCACACATTGGTAGTTAAAGAAATTGCTCACATTATACGGTCTCAATTAGAAGAGGGAAAACCGTCATGGAAGCAATTATCAGGAAATCACCGAGATGATTTCTTTGACTCATTCATGGTAATTATCAACTAAGTTTCTAATTATGACATAACAGAACCTCTTTAGAACAGATTTAAGCAAATAATGTTTGAACTTTTTTTCTTATCTGATTATTACAGAAAAAGTTTACATGGCAACCAGAGCATAAGGTAAAAGTGCGAAAAAACTTTGAAATAAGGGGTTCAGCTAAGATGTCTCAATTGATGCAAGAAATTCGGAAAAATTTGGAGGATAAACCAAGTTGGATGGGAGACGACGTTTGGAATGACTTGAAGCAATATTGGAAGTCCTCCACGTTCAAAAAAAAATCTCAAACAAATAAAAGAAATCGCAATTCTATGGCTGGTGCATCTCTTCACACTGGAGGATCAATTCCCCATCGTTTACATTGGAATAAAATGGTATTAAGATTTTATTATATTTCATAATATAGTATTTAAAATTAATGACACTAAAACTATTTTTATAATTTACAGAAAAAGGAAAAAGGTGCAGAACCGTCGTTGACTGAGTTTTACTTCCGTACACATCGCAAAAAGGATCAAAGTTGGGTGGGTGTGCATGCTGAATCTGCATATGTGAGTATATTATTAAATAAATAACTACCATATATGTTTGCACTCATGTGTGGCTCAAAGGAAGATTTGGCTATAGATCATATGATAATTGAAGTTATTTTGTCCACATTATTTTTTGTTTCTTCTGTTTTTTGTAAAACTGTTCAGTTTTTATTTTTTATGCATTGGACTTCTTTTATTTTCTTTTAGGACAAATTTGAACAAAAAAAGATGGACTTATCTACTCAGAATACCACATTTGGTCTAGGAGAGGATGAAGTTGACAGTCAACCAACGTATGAAATGCCAACTGATTTGGATATATGGGTAGATTCTGTTGGTAGAAAAAAAAGGGAGGATATTTGGTCTTGGATCTTATTCAAAAACCTTGATTCCATCTTCAAATCAACAAACAAATACACATGCTAATTCAGAAGAGGTTGAATTTTTGAGAAGTCAAGTGCATGCTTTAAATGTATCATTGCAAAGACAAGAACAAGAGAAGTTGCAGATGAGGCAACAAATGCAACGGCAAGAAAAAGAGATGAGCAAAACTAATAAAAAACTTGCTGCTATTATGAAACATTTGGGATTTGTTGGATCTTCTTCCCATGTTTTAAACCCCAACAGTGAATCAAATGAACACATTGATGAAGAGGACAACAATGATTTTGCTGAAGATGTTGATGAAGATAACCATGATTTTGCTGAAGATGTTGATGAAGAGGAGAACAATGTCGATGAAGATGACCATGATTTTGCTGAAGATGTTGATGAAGATAACAGTAGTTATCATATTGATAACTAGTAACTTGGAGTCTGAAATTATGGTATGTTTCTTTATTGGACTCTTTGTGTACAGTTGCCTTTTTTCACATATTAGCATATGAAGTAATTTGCTCCATTGTTGAAAATATGTGTATTATTAGTAGTATTGTTATGAATTGTACTTATTGTTCTAGGCTTGAACTTTAGAAGATCTCAGCCTCTCTAAAAGTATTCACATGGTAGAGTATGACATACCACCTATCTTTTTGTTAGTTTGCTACATTGTTTTACCTTTTGACTGTTTTGTCTGATTGATTCATTGTTGGTATTTGATTTGGGTTTTAACATATATGTCATGTTGTCCATTGTAGGTTCTGCTATCACAGGTCCAATTGGTAAGGAGTGTGTTGATCTTTGGCCTAGGATTGCAAGTGCTGCCAATGCCATTGTATGA

Protein sequence

>MS.gene91717.t1

MSLVSQGLFGLFQFDHHTLVVKEIAHIIRSQLEEGKPSWKQLSGNHRDDFFDSFMKKFTWQPEHKVKVRKNFEIRGSAKMSQLMQEIRKNLEDKPSWMGDDVWNDLKQYWKSSTFKKKSQTNKRNRNSMAGASLHTGGSIPHRLHWNKMKKEKGAEPSLTEFYFRTHRKKDQSWVGVHAESAYDKFEQKKMDLSTQNTTFGLGEDEVDSQPTQEQEKLQMRQQMQRQEKEMSKTNKKLAAIMKHLGFVGSSSHVLNPNSESNEHIDEEDNNDFAEDVDEDNHDFAEDVDEEENNVDEDDHDFAEDVDEDNSSAITGPIGKECVDLWPRIASAANAIV