Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91717.t1 | RDX87334.1 | 67.7 | 201 | 65 | 0 | 14 | 214 | 318 | 518 | 2.90E-72 | 282.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91717.t1 | P49690 | 96.0 | 25 | 1 | 0 | 313 | 337 | 116 | 140 | 6.8e-06 | 53.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91717.t1 | A0A371G9V1 | 67.7 | 201 | 65 | 0 | 14 | 214 | 318 | 518 | 2.1e-72 | 282.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050303 | MS.gene91717 | 0.806208 | 9.20E-50 | -1.69E-46 |
| MS.gene050719 | MS.gene91717 | 0.804538 | 2.06E-49 | -1.69E-46 |
| MS.gene050721 | MS.gene91717 | 0.808547 | 2.94E-50 | -1.69E-46 |
| MS.gene052176 | MS.gene91717 | 0.833429 | 5.36E-56 | -1.69E-46 |
| MS.gene052286 | MS.gene91717 | 0.801071 | 1.07E-48 | -1.69E-46 |
| MS.gene052302 | MS.gene91717 | 0.819398 | 1.19E-52 | -1.69E-46 |
| MS.gene052309 | MS.gene91717 | -0.80638 | 8.46E-50 | -1.69E-46 |
| MS.gene052358 | MS.gene91717 | -0.807835 | 4.16E-50 | -1.69E-46 |
| MS.gene052376 | MS.gene91717 | 0.827392 | 1.60E-54 | -1.69E-46 |
| MS.gene052856 | MS.gene91717 | 0.818651 | 1.75E-52 | -1.69E-46 |
| MS.gene052858 | MS.gene91717 | 0.807566 | 4.75E-50 | -1.69E-46 |
| MS.gene053294 | MS.gene91717 | 0.81044 | 1.15E-50 | -1.69E-46 |
| MS.gene057079 | MS.gene91717 | 0.802056 | 6.72E-49 | -1.69E-46 |
| MS.gene05795 | MS.gene91717 | 0.814362 | 1.60E-51 | -1.69E-46 |
| MS.gene061040 | MS.gene91717 | -0.810723 | 1.00E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91717.t1 | MTR_2g070580 | 65.986 | 147 | 30 | 3 | 191 | 337 | 1 | 127 | 4.71e-54 | 173 |
| MS.gene91717.t1 | MTR_8g019070 | 53.913 | 115 | 37 | 3 | 154 | 265 | 84 | 185 | 5.02e-26 | 103 |
| MS.gene91717.t1 | MTR_8g019070 | 86.000 | 50 | 7 | 0 | 13 | 62 | 25 | 74 | 1.32e-23 | 97.1 |
| MS.gene91717.t1 | MTR_1g006970 | 82.000 | 50 | 9 | 0 | 242 | 291 | 1 | 50 | 6.35e-14 | 65.9 |
| MS.gene91717.t1 | MTR_7g035425 | 32.283 | 127 | 78 | 3 | 18 | 139 | 214 | 337 | 1.88e-13 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 60 sgRNAs with CRISPR-Local
Find 114 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTGCTATTATGAAACATT+TGG | 0.271782 | 7.2:+39091401 | MS.gene91717:CDS |
| TCGTTTACATTGGAATAAAA+TGG | 0.272094 | 7.2:+39090656 | MS.gene91717:CDS |
| TACTATGAGTTTGGTATCTC+AGG | 0.320254 | 7.2:+39090051 | None:intergenic |
| ATTACAAACTACTATGAGTT+TGG | 0.324634 | 7.2:+39090042 | None:intergenic |
| AAGAAATTGCTCACATTATA+CGG | 0.326347 | 7.2:+39090194 | MS.gene91717:CDS |
| CTTCCGTACACATCGCAAAA+AGG | 0.331253 | 7.2:+39090794 | MS.gene91717:CDS |
| TGATTTCTTTGACTCATTCA+TGG | 0.333269 | 7.2:+39090273 | MS.gene91717:CDS |
| TAAAAGAAATCGCAATTCTA+TGG | 0.339144 | 7.2:+39090596 | MS.gene91717:CDS |
| GTAAGGAGTGTGTTGATCTT+TGG | 0.351346 | 7.2:+39091997 | MS.gene91717:CDS |
| ATGAAACATTTGGGATTTGT+TGG | 0.353696 | 7.2:+39091411 | MS.gene91717:CDS |
| CCGTCATGGAAGCAATTATC+AGG | 0.356730 | 7.2:+39090238 | MS.gene91717:CDS |
| CTCAATTGATGCAAGAAATT+CGG | 0.357495 | 7.2:+39090472 | MS.gene91717:CDS |
| TGTTCATTTGATTCACTGTT+GGG | 0.362974 | 7.2:-39091456 | None:intergenic |
| TTGGTATCTCAGGGCCTGTT+TGG | 0.371809 | 7.2:+39090061 | MS.gene91717:CDS |
| GGAATGACTTGAAGCAATAT+TGG | 0.376576 | 7.2:+39090538 | MS.gene91717:CDS |
| GCTGCTATTATGAAACATTT+GGG | 0.395533 | 7.2:+39091402 | MS.gene91717:CDS |
| CACTGTTGGGGTTTAAAACA+TGG | 0.404795 | 7.2:-39091443 | None:intergenic |
| GTTGGATGGGAGACGACGTT+TGG | 0.440500 | 7.2:+39090517 | MS.gene91717:CDS |
| TCAACACACTCCTTACCAAT+TGG | 0.449997 | 7.2:-39091990 | None:intergenic |
| TCTACTCAGAATACCACATT+TGG | 0.453989 | 7.2:+39091074 | MS.gene91717:CDS |
| CAATTCCCCATCGTTTACAT+TGG | 0.470029 | 7.2:+39090646 | MS.gene91717:CDS |
| GTGTTCATTTGATTCACTGT+TGG | 0.485047 | 7.2:-39091457 | None:intergenic |
| TACATGGCAACCAGAGCATA+AGG | 0.485592 | 7.2:+39090404 | MS.gene91717:CDS |
| TTTATTCCAATGTAAACGAT+GGG | 0.487087 | 7.2:-39090652 | None:intergenic |
| AACAAGAGAAGTTGCAGATG+AGG | 0.489038 | 7.2:+39091328 | MS.gene91717:CDS |
| TAAACTGAAACAGTCCAAAC+AGG | 0.492800 | 7.2:-39090075 | None:intergenic |
| TTGGCAGCACTTGCAATCCT+AGG | 0.493302 | 7.2:-39092020 | None:intergenic |
| TCTGCTATCACAGGTCCAAT+TGG | 0.496330 | 7.2:+39091975 | MS.gene91717:CDS |
| GGAGGATAAACCAAGTTGGA+TGG | 0.507490 | 7.2:+39090503 | MS.gene91717:CDS |
| CAACATCTTCAGCAAAATCA+TGG | 0.507886 | 7.2:-39091530 | None:intergenic |
| CAACATCTTCAGCAAAATCA+TGG | 0.508374 | 7.2:-39091584 | None:intergenic |
| AGTGTGTTGATCTTTGGCCT+AGG | 0.508867 | 7.2:+39092003 | MS.gene91717:CDS |
| AGAAATCGCAATTCTATGGC+TGG | 0.511177 | 7.2:+39090600 | MS.gene91717:CDS |
| TGCTGAAGATGTTGATGAAG+AGG | 0.520424 | 7.2:+39091539 | MS.gene91717:CDS |
| AAATGAACACATTGATGAAG+AGG | 0.533356 | 7.2:+39091470 | MS.gene91717:CDS |
| ACGTCGTCTCCCATCCAACT+TGG | 0.544669 | 7.2:-39090513 | None:intergenic |
| ATTGTAGGTTCTGCTATCAC+AGG | 0.547291 | 7.2:+39091966 | MS.gene91717:intron |
| CAGAATCAACACTCATACAA+TGG | 0.548660 | 7.2:-39092045 | None:intergenic |
| CAGAATACCACATTTGGTCT+AGG | 0.549997 | 7.2:+39091080 | MS.gene91717:CDS |
| GAGGATAAACCAAGTTGGAT+GGG | 0.558345 | 7.2:+39090504 | MS.gene91717:CDS |
| ATTTGGAGGATAAACCAAGT+TGG | 0.565075 | 7.2:+39090499 | MS.gene91717:CDS |
| CCTGATAATTGCTTCCATGA+CGG | 0.572248 | 7.2:-39090238 | None:intergenic |
| TATCACAGGTCCAATTGGTA+AGG | 0.581708 | 7.2:+39091980 | MS.gene91717:CDS |
| GGTGCATCTCTTCACACTGG+AGG | 0.584504 | 7.2:+39090621 | MS.gene91717:CDS |
| GTTCATTTGATTCACTGTTG+GGG | 0.584708 | 7.2:-39091455 | None:intergenic |
| CAACACTCATACAATGGCAT+TGG | 0.586391 | 7.2:-39092039 | None:intergenic |
| ACTGTTGGGGTTTAAAACAT+GGG | 0.593401 | 7.2:-39091442 | None:intergenic |
| ATCCTCTCCTAGACCAAATG+TGG | 0.599587 | 7.2:-39091087 | None:intergenic |
| TAGAAGAGGGAAAACCGTCA+TGG | 0.601838 | 7.2:+39090224 | MS.gene91717:CDS |
| ACTATGAGTTTGGTATCTCA+GGG | 0.606257 | 7.2:+39090052 | None:intergenic |
| TTTCTTTAACTACCAATGTG+TGG | 0.607987 | 7.2:-39090177 | None:intergenic |
| GCTGGTGCATCTCTTCACAC+TGG | 0.609772 | 7.2:+39090618 | MS.gene91717:CDS |
| TATACGGTCTCAATTAGAAG+AGG | 0.616182 | 7.2:+39090210 | MS.gene91717:CDS |
| CAGGTTTGATCACCACACAT+TGG | 0.634316 | 7.2:+39090165 | MS.gene91717:intron |
| TACCACATTTGGTCTAGGAG+AGG | 0.638679 | 7.2:+39091085 | MS.gene91717:CDS |
| AGATGAGGCAACAAATGCAA+CGG | 0.644760 | 7.2:+39091343 | MS.gene91717:CDS |
| ATACGGTCTCAATTAGAAGA+GGG | 0.649151 | 7.2:+39090211 | MS.gene91717:CDS |
| ATGAGTCAAAGAAATCATCT+CGG | 0.652827 | 7.2:-39090267 | None:intergenic |
| TTATTCCAATGTAAACGATG+GGG | 0.656802 | 7.2:-39090651 | None:intergenic |
| AAGTAAAACTCAGTCAACGA+CGG | 0.749212 | 7.2:-39090774 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTATAATTTACAGAAAA+AGG | + | chr7.2:39090737-39090756 | MS.gene91717:intron | 10.0% |
| !! | ACTTATTTGAACTTATTTAT+TGG | + | chr7.2:39090097-39090116 | MS.gene91717:intron | 15.0% |
| !!! | AGTTTTTATTTTTTATGCAT+TGG | + | chr7.2:39091000-39091019 | MS.gene91717:intron | 15.0% |
| !! | AATTTACAGAAAAAGGAAAA+AGG | + | chr7.2:39090744-39090763 | MS.gene91717:intron | 20.0% |
| !! | AGAAGAAACAAAAAATAATG+TGG | - | chr7.2:39090961-39090980 | None:intergenic | 20.0% |
| !! | ATATGCTAATATGTGAAAAA+AGG | - | chr7.2:39091702-39091721 | None:intergenic | 20.0% |
| !! | ATTATGGTATGTTTCTTTAT+TGG | + | chr7.2:39091658-39091677 | MS.gene91717:intron | 20.0% |
| !! | CAAATTTGAACAAAAAAAGA+TGG | + | chr7.2:39091046-39091065 | MS.gene91717:CDS | 20.0% |
| !! | TATTACAGAAAAAGTTTACA+TGG | + | chr7.2:39090388-39090407 | MS.gene91717:intron | 20.0% |
| !!! | AATACACATATTTTCAACAA+TGG | - | chr7.2:39091738-39091757 | None:intergenic | 20.0% |
| !!! | GACTTCTTTTATTTTCTTTT+AGG | + | chr7.2:39091022-39091041 | MS.gene91717:intron | 20.0% |
| ! | AAGAAATTGCTCACATTATA+CGG | + | chr7.2:39090194-39090213 | MS.gene91717:CDS | 25.0% |
| ! | TAAAAGAAATCGCAATTCTA+TGG | + | chr7.2:39090596-39090615 | MS.gene91717:CDS | 25.0% |
| ! | TAGCAAACTAACAAAAAGAT+AGG | - | chr7.2:39091862-39091881 | None:intergenic | 25.0% |
| ! | TATTGGAATAATTGCCTTAT+AGG | + | chr7.2:39090114-39090133 | MS.gene91717:intron | 25.0% |
| ! | TCGTTTACATTGGAATAAAA+TGG | + | chr7.2:39090656-39090675 | MS.gene91717:CDS | 25.0% |
| ! | TGAATTGTACTTATTGTTCT+AGG | + | chr7.2:39091774-39091793 | MS.gene91717:intron | 25.0% |
| ! | TTCATTGTTGGTATTTGATT+TGG | + | chr7.2:39091917-39091936 | MS.gene91717:intron | 25.0% |
| ! | TTTATTCCAATGTAAACGAT+GGG | - | chr7.2:39090655-39090674 | None:intergenic | 25.0% |
| !! | ATTCTGTTGGTAGAAAAAAA+AGG | + | chr7.2:39091165-39091184 | MS.gene91717:intron | 25.0% |
| !! | CATATTGATAACTAGTAACT+TGG | + | chr7.2:39091627-39091646 | MS.gene91717:intron | 25.0% |
| !! | TCATTGTTGGTATTTGATTT+GGG | + | chr7.2:39091918-39091937 | MS.gene91717:intron | 25.0% |
| !! | TTCTGTTGGTAGAAAAAAAA+GGG | + | chr7.2:39091166-39091185 | MS.gene91717:intron | 25.0% |
| !! | TTTTATTCCAATGTAAACGA+TGG | - | chr7.2:39090656-39090675 | None:intergenic | 25.0% |
| !!! | CGAAAAAACTTTGAAATAAG+GGG | + | chr7.2:39090435-39090454 | MS.gene91717:CDS | 25.0% |
| !!! | GCGAAAAAACTTTGAAATAA+GGG | + | chr7.2:39090434-39090453 | MS.gene91717:CDS | 25.0% |
| !!! | TGCATATTTGACTTATTTTC+AGG | + | chr7.2:39090146-39090165 | MS.gene91717:intron | 25.0% |
| !!! | TGCGAAAAAACTTTGAAATA+AGG | + | chr7.2:39090433-39090452 | MS.gene91717:CDS | 25.0% |
| !!! | TTGAGATTTTTTTTTGAACG+TGG | - | chr7.2:39090571-39090590 | None:intergenic | 25.0% |
| !!! | TTTGTTTGTTGATTTGAAGA+TGG | - | chr7.2:39091231-39091250 | None:intergenic | 25.0% |
| AAATGAACACATTGATGAAG+AGG | + | chr7.2:39091470-39091489 | MS.gene91717:CDS | 30.0% | |
| AATCAGACAAAACAGTCAAA+AGG | - | chr7.2:39091895-39091914 | None:intergenic | 30.0% | |
| AGAAATTCGGAAAAATTTGG+AGG | + | chr7.2:39090485-39090504 | MS.gene91717:CDS | 30.0% | |
| ATGAGTCAAAGAAATCATCT+CGG | - | chr7.2:39090270-39090289 | None:intergenic | 30.0% | |
| ATGCATATCACTATCCTATA+AGG | - | chr7.2:39090131-39090150 | None:intergenic | 30.0% | |
| CAAACTAACAAAAAGATAGG+TGG | - | chr7.2:39091859-39091878 | None:intergenic | 30.0% | |
| CTCAATTGATGCAAGAAATT+CGG | + | chr7.2:39090472-39090491 | MS.gene91717:CDS | 30.0% | |
| GAAAAAAAAGGGAGGATATT+TGG | + | chr7.2:39091177-39091196 | MS.gene91717:intron | 30.0% | |
| GCAAGAAATTCGGAAAAATT+TGG | + | chr7.2:39090482-39090501 | MS.gene91717:CDS | 30.0% | |
| GCTGCTATTATGAAACATTT+GGG | + | chr7.2:39091402-39091421 | MS.gene91717:CDS | 30.0% | |
| TGATTTCTTTGACTCATTCA+TGG | + | chr7.2:39090273-39090292 | MS.gene91717:CDS | 30.0% | |
| TGCTGCTATTATGAAACATT+TGG | + | chr7.2:39091401-39091420 | MS.gene91717:CDS | 30.0% | |
| TGTTCATTTGATTCACTGTT+GGG | - | chr7.2:39091459-39091478 | None:intergenic | 30.0% | |
| TTATTCCAATGTAAACGATG+GGG | - | chr7.2:39090654-39090673 | None:intergenic | 30.0% | |
| TTTCTTTAACTACCAATGTG+TGG | - | chr7.2:39090180-39090199 | None:intergenic | 30.0% | |
| ! | ATGAAACATTTGGGATTTGT+TGG | + | chr7.2:39091411-39091430 | MS.gene91717:CDS | 30.0% |
| ! | TAACTTGGAGTCTGAAATTA+TGG | + | chr7.2:39091642-39091661 | MS.gene91717:intron | 30.0% |
| ! | TTGATTTGAAGATGGAATCA+AGG | - | chr7.2:39091223-39091242 | None:intergenic | 30.0% |
| ! | TTGTCTGATTGATTCATTGT+TGG | + | chr7.2:39091905-39091924 | MS.gene91717:intron | 30.0% |
| !! | TGCTTAAATCTGTTCTAAAG+AGG | - | chr7.2:39090337-39090356 | None:intergenic | 30.0% |
| !!! | AGATTTTTTTTTGAACGTGG+AGG | - | chr7.2:39090568-39090587 | None:intergenic | 30.0% |
| AAAAAGGATCAAAGTTGGGT+GGG | + | chr7.2:39090810-39090829 | MS.gene91717:CDS | 35.0% | |
| AAGTAAAACTCAGTCAACGA+CGG | - | chr7.2:39090777-39090796 | None:intergenic | 35.0% | |
| ACCCATATATCCAAATCAGT+TGG | - | chr7.2:39091143-39091162 | None:intergenic | 35.0% | |
| ATACGGTCTCAATTAGAAGA+GGG | + | chr7.2:39090211-39090230 | MS.gene91717:CDS | 35.0% | |
| ATCGCAAAAAGGATCAAAGT+TGG | + | chr7.2:39090805-39090824 | MS.gene91717:CDS | 35.0% | |
| ATTTGGAGGATAAACCAAGT+TGG | + | chr7.2:39090499-39090518 | MS.gene91717:CDS | 35.0% | |
| CAACATCTTCAGCAAAATCA+TGG | - | chr7.2:39091500-39091519 | None:intergenic | 35.0% | |
| CACATGAGTGCAAACATATA+TGG | - | chr7.2:39090885-39090904 | None:intergenic | 35.0% | |
| GATATATGGGTAGATTCTGT+TGG | + | chr7.2:39091152-39091171 | MS.gene91717:intron | 35.0% | |
| GGAATGACTTGAAGCAATAT+TGG | + | chr7.2:39090538-39090557 | MS.gene91717:CDS | 35.0% | |
| GTATGAAATGCCAACTGATT+TGG | + | chr7.2:39091130-39091149 | MS.gene91717:intron | 35.0% | |
| GTGTTCATTTGATTCACTGT+TGG | - | chr7.2:39091460-39091479 | None:intergenic | 35.0% | |
| GTTCATTTGATTCACTGTTG+GGG | - | chr7.2:39091458-39091477 | None:intergenic | 35.0% | |
| TAAACTGAAACAGTCCAAAC+AGG | - | chr7.2:39090078-39090097 | None:intergenic | 35.0% | |
| TACACATGCTAATTCAGAAG+AGG | + | chr7.2:39091251-39091270 | MS.gene91717:intron | 35.0% | |
| TATACGGTCTCAATTAGAAG+AGG | + | chr7.2:39090210-39090229 | MS.gene91717:CDS | 35.0% | |
| TATATGTTTGCACTCATGTG+TGG | + | chr7.2:39090885-39090904 | MS.gene91717:intron | 35.0% | |
| TATGTCATGTTGTCCATTGT+AGG | + | chr7.2:39091951-39091970 | MS.gene91717:intron | 35.0% | |
| TCGCAAAAAGGATCAAAGTT+GGG | + | chr7.2:39090806-39090825 | MS.gene91717:CDS | 35.0% | |
| TCTACTCAGAATACCACATT+TGG | + | chr7.2:39091074-39091093 | MS.gene91717:CDS | 35.0% | |
| ! | ACTGTTGGGGTTTAAAACAT+GGG | - | chr7.2:39091445-39091464 | None:intergenic | 35.0% |
| ! | TGTTGGTAGAAAAAAAAGGG+AGG | + | chr7.2:39091169-39091188 | MS.gene91717:intron | 35.0% |
| !! | CCATGTGAATACTTTTAGAG+AGG | - | chr7.2:39091822-39091841 | None:intergenic | 35.0% |
| !! | CCTCTCTAAAAGTATTCACA+TGG | + | chr7.2:39091819-39091838 | MS.gene91717:intron | 35.0% |
| !! | GCCAACTGATTTGGATATAT+GGG | + | chr7.2:39091139-39091158 | MS.gene91717:intron | 35.0% |
| !! | TGCCAACTGATTTGGATATA+TGG | + | chr7.2:39091138-39091157 | MS.gene91717:intron | 35.0% |
| AAAGGGAGGATATTTGGTCT+TGG | + | chr7.2:39091183-39091202 | MS.gene91717:intron | 40.0% | |
| AACAAGAGAAGTTGCAGATG+AGG | + | chr7.2:39091328-39091347 | MS.gene91717:CDS | 40.0% | |
| AGAAATCGCAATTCTATGGC+TGG | + | chr7.2:39090600-39090619 | MS.gene91717:CDS | 40.0% | |
| AGATGAGGCAACAAATGCAA+CGG | + | chr7.2:39091343-39091362 | MS.gene91717:CDS | 40.0% | |
| ATTGTAGGTTCTGCTATCAC+AGG | + | chr7.2:39091966-39091985 | MS.gene91717:intron | 40.0% | |
| CAAAAAGGATCAAAGTTGGG+TGG | + | chr7.2:39090809-39090828 | MS.gene91717:CDS | 40.0% | |
| CAATTCCCCATCGTTTACAT+TGG | + | chr7.2:39090646-39090665 | MS.gene91717:CDS | 40.0% | |
| CAGAATACCACATTTGGTCT+AGG | + | chr7.2:39091080-39091099 | MS.gene91717:CDS | 40.0% | |
| CCTGATAATTGCTTCCATGA+CGG | - | chr7.2:39090241-39090260 | None:intergenic | 40.0% | |
| TATCACAGGTCCAATTGGTA+AGG | + | chr7.2:39091980-39091999 | MS.gene91717:CDS | 40.0% | |
| TCAACACACTCCTTACCAAT+TGG | - | chr7.2:39091993-39092012 | None:intergenic | 40.0% | |
| TCAGTTGGCATTTCATACGT+TGG | - | chr7.2:39091128-39091147 | None:intergenic | 40.0% | |
| TGTGATAGCAGAACCTACAA+TGG | - | chr7.2:39091967-39091986 | None:intergenic | 40.0% | |
| ! | CACTGTTGGGGTTTAAAACA+TGG | - | chr7.2:39091446-39091465 | None:intergenic | 40.0% |
| ! | GAGGATAAACCAAGTTGGAT+GGG | + | chr7.2:39090504-39090523 | MS.gene91717:CDS | 40.0% |
| ! | GATCCTTTTTGCGATGTGTA+CGG | - | chr7.2:39090800-39090819 | None:intergenic | 40.0% |
| ! | GTAAGGAGTGTGTTGATCTT+TGG | + | chr7.2:39091997-39092016 | MS.gene91717:CDS | 40.0% |
| ! | TGCTGAAGATGTTGATGAAG+AGG | + | chr7.2:39091506-39091525 | MS.gene91717:CDS | 40.0% |
| ATCCTCTCCTAGACCAAATG+TGG | - | chr7.2:39091090-39091109 | None:intergenic | 45.0% | |
| CAGGTTTGATCACCACACAT+TGG | + | chr7.2:39090165-39090184 | MS.gene91717:intron | 45.0% | |
| CCGTCATGGAAGCAATTATC+AGG | + | chr7.2:39090238-39090257 | MS.gene91717:CDS | 45.0% | |
| CTTCCGTACACATCGCAAAA+AGG | + | chr7.2:39090794-39090813 | MS.gene91717:CDS | 45.0% | |
| GTGTGGCTCAAAGGAAGATT+TGG | + | chr7.2:39090902-39090921 | MS.gene91717:intron | 45.0% | |
| TACATGGCAACCAGAGCATA+AGG | + | chr7.2:39090404-39090423 | MS.gene91717:CDS | 45.0% | |
| TACCACATTTGGTCTAGGAG+AGG | + | chr7.2:39091085-39091104 | MS.gene91717:CDS | 45.0% | |
| TAGAAGAGGGAAAACCGTCA+TGG | + | chr7.2:39090224-39090243 | MS.gene91717:CDS | 45.0% | |
| TCTGCTATCACAGGTCCAAT+TGG | + | chr7.2:39091975-39091994 | MS.gene91717:CDS | 45.0% | |
| ! | AGTGTGTTGATCTTTGGCCT+AGG | + | chr7.2:39092003-39092022 | MS.gene91717:CDS | 45.0% |
| ! | CGCACTTTTACCTTATGCTC+TGG | - | chr7.2:39090417-39090436 | None:intergenic | 45.0% |
| ! | GGAGGATAAACCAAGTTGGA+TGG | + | chr7.2:39090503-39090522 | MS.gene91717:CDS | 45.0% |
| TGCACTCATGTGTGGCTCAA+AGG | + | chr7.2:39090893-39090912 | MS.gene91717:intron | 50.0% | |
| TTGGCAGCACTTGCAATCCT+AGG | - | chr7.2:39092023-39092042 | None:intergenic | 50.0% | |
| TTGGTATCTCAGGGCCTGTT+TGG | + | chr7.2:39090061-39090080 | MS.gene91717:CDS | 50.0% | |
| ACGTCGTCTCCCATCCAACT+TGG | - | chr7.2:39090516-39090535 | None:intergenic | 55.0% | |
| GCTGGTGCATCTCTTCACAC+TGG | + | chr7.2:39090618-39090637 | MS.gene91717:CDS | 55.0% | |
| GGTGCATCTCTTCACACTGG+AGG | + | chr7.2:39090621-39090640 | MS.gene91717:CDS | 55.0% | |
| GTTGGATGGGAGACGACGTT+TGG | + | chr7.2:39090517-39090536 | MS.gene91717:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 39090055 | 39092055 | 39090055 | ID=MS.gene91717 |
| chr7.2 | mRNA | 39090055 | 39092055 | 39090055 | ID=MS.gene91717.t1;Parent=MS.gene91717 |
| chr7.2 | exon | 39090055 | 39090092 | 39090055 | ID=MS.gene91717.t1.exon1;Parent=MS.gene91717.t1 |
| chr7.2 | CDS | 39090055 | 39090092 | 39090055 | ID=cds.MS.gene91717.t1;Parent=MS.gene91717.t1 |
| chr7.2 | exon | 39090168 | 39090294 | 39090168 | ID=MS.gene91717.t1.exon2;Parent=MS.gene91717.t1 |
| chr7.2 | CDS | 39090168 | 39090294 | 39090168 | ID=cds.MS.gene91717.t1;Parent=MS.gene91717.t1 |
| chr7.2 | exon | 39090396 | 39090677 | 39090396 | ID=MS.gene91717.t1.exon3;Parent=MS.gene91717.t1 |
| chr7.2 | CDS | 39090396 | 39090677 | 39090396 | ID=cds.MS.gene91717.t1;Parent=MS.gene91717.t1 |
| chr7.2 | exon | 39090753 | 39090854 | 39090753 | ID=MS.gene91717.t1.exon4;Parent=MS.gene91717.t1 |
| chr7.2 | CDS | 39090753 | 39090854 | 39090753 | ID=cds.MS.gene91717.t1;Parent=MS.gene91717.t1 |
| chr7.2 | exon | 39091044 | 39091129 | 39091044 | ID=MS.gene91717.t1.exon5;Parent=MS.gene91717.t1 |
| chr7.2 | CDS | 39091044 | 39091129 | 39091044 | ID=cds.MS.gene91717.t1;Parent=MS.gene91717.t1 |
| chr7.2 | exon | 39091323 | 39091618 | 39091323 | ID=MS.gene91717.t1.exon6;Parent=MS.gene91717.t1 |
| chr7.2 | CDS | 39091323 | 39091618 | 39091323 | ID=cds.MS.gene91717.t1;Parent=MS.gene91717.t1 |
| chr7.2 | exon | 39091973 | 39092055 | 39091973 | ID=MS.gene91717.t1.exon7;Parent=MS.gene91717.t1 |
| chr7.2 | CDS | 39091973 | 39092055 | 39091973 | ID=cds.MS.gene91717.t1;Parent=MS.gene91717.t1 |
| Gene Sequence |
| Protein sequence |
