Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92002.t1 | XP_013447749.1 | 89.6 | 106 | 7 | 1 | 48 | 149 | 81 | 186 | 4.00E-47 | 198.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92002.t1 | A0A072TWG4 | 89.6 | 106 | 7 | 1 | 48 | 149 | 81 | 186 | 2.9e-47 | 198.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049758 | MS.gene92002 | 0.814912 | 1.21E-51 | -1.69E-46 |
| MS.gene04984 | MS.gene92002 | 0.803733 | 3.03E-49 | -1.69E-46 |
| MS.gene049915 | MS.gene92002 | 0.828938 | 6.81E-55 | -1.69E-46 |
| MS.gene051245 | MS.gene92002 | 0.801663 | 8.10E-49 | -1.69E-46 |
| MS.gene051757 | MS.gene92002 | 0.803988 | 2.68E-49 | -1.69E-46 |
| MS.gene052302 | MS.gene92002 | 0.807849 | 4.13E-50 | -1.69E-46 |
| MS.gene052376 | MS.gene92002 | 0.811096 | 8.31E-51 | -1.69E-46 |
| MS.gene052856 | MS.gene92002 | 0.815864 | 7.43E-52 | -1.69E-46 |
| MS.gene054930 | MS.gene92002 | 0.809165 | 2.17E-50 | -1.69E-46 |
| MS.gene055133 | MS.gene92002 | 0.831584 | 1.54E-55 | -1.69E-46 |
| MS.gene057393 | MS.gene92002 | 0.819756 | 9.83E-53 | -1.69E-46 |
| MS.gene057754 | MS.gene92002 | 0.867469 | 1.34E-65 | -1.69E-46 |
| MS.gene058182 | MS.gene92002 | 0.826573 | 2.52E-54 | -1.69E-46 |
| MS.gene058906 | MS.gene92002 | 0.801804 | 7.57E-49 | -1.69E-46 |
| MS.gene060084 | MS.gene92002 | 0.829817 | 4.16E-55 | -1.69E-46 |
| MS.gene060476 | MS.gene92002 | 0.822834 | 1.92E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92002.t1 | MTR_7g018880 | 89.600 | 125 | 9 | 1 | 29 | 149 | 62 | 186 | 4.90e-77 | 232 |
| MS.gene92002.t1 | MTR_3g090440 | 31.008 | 129 | 85 | 1 | 48 | 172 | 89 | 217 | 8.98e-19 | 83.2 |
| MS.gene92002.t1 | MTR_5g010050 | 27.907 | 129 | 89 | 1 | 18 | 142 | 56 | 184 | 3.13e-16 | 76.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92002.t1 | AT1G71480 | 69.725 | 109 | 29 | 1 | 44 | 148 | 70 | 178 | 9.81e-49 | 159 |
| MS.gene92002.t1 | AT1G71480 | 60.150 | 133 | 49 | 1 | 44 | 172 | 70 | 202 | 2.12e-48 | 159 |
| MS.gene92002.t1 | AT1G71480 | 62.195 | 82 | 27 | 1 | 44 | 121 | 70 | 151 | 4.74e-28 | 105 |
| MS.gene92002.t1 | AT5G41470 | 38.776 | 98 | 56 | 1 | 44 | 137 | 74 | 171 | 5.19e-20 | 87.0 |
Find 55 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAACCTTAGTAACTGAATT+TGG | 0.196315 | 7.3:+79433119 | None:intergenic |
| TGATCGCATGCAAAATAATT+TGG | 0.201373 | 7.3:+79431402 | None:intergenic |
| GTTGGGGTGATTTGGCATTT+AGG | 0.201767 | 7.3:-79432681 | MS.gene92002:intron |
| CTTGGAAAATGATACAAAAT+TGG | 0.212744 | 7.3:-79431355 | MS.gene92002:CDS |
| CATCATCTGTTGGGGTGATT+TGG | 0.252810 | 7.3:-79432689 | MS.gene92002:CDS |
| GAAGAAGAAGAGACAGAAAA+TGG | 0.272859 | 7.3:-79433088 | MS.gene92002:CDS |
| GTGATTTCTAAGCATTCTTC+AGG | 0.284909 | 7.3:-79431494 | MS.gene92002:CDS |
| ATTGTTAAGCATGGGATAAT+TGG | 0.296778 | 7.3:-79431314 | MS.gene92002:CDS |
| GTTACTAAGGTTGTTGGAAT+TGG | 0.326378 | 7.3:-79433110 | MS.gene92002:CDS |
| CGCAGGATTCATCATCTGTT+GGG | 0.334630 | 7.3:-79432698 | MS.gene92002:CDS |
| AATCAGAACGGTTGGGTGTT+TGG | 0.341526 | 7.3:-79431567 | MS.gene92002:intron |
| AAGAGACAGAAAATGGAATA+TGG | 0.354290 | 7.3:-79433081 | MS.gene92002:CDS |
| AACAAACTGCAGATCCTTGC+TGG | 0.380904 | 7.3:+79432737 | None:intergenic |
| AGGTTAGAGAAGGGTGTTGA+AGG | 0.385052 | 7.3:-79431518 | MS.gene92002:CDS |
| AATTCAGTTACTAAGGTTGT+TGG | 0.412689 | 7.3:-79433116 | MS.gene92002:CDS |
| GAACTCTGATTTATGTAGTA+AGG | 0.425846 | 7.3:-79431288 | MS.gene92002:CDS |
| TGCTCCAAATTCAGTTACTA+AGG | 0.431910 | 7.3:-79433123 | MS.gene92002:CDS |
| AAACTGCATCCTTTGCTAAA+GGG | 0.439731 | 7.3:+79431855 | None:intergenic |
| GGTTAGAGAAGGGTGTTGAA+GGG | 0.445704 | 7.3:-79431517 | MS.gene92002:CDS |
| GCATGCGATCAGTCCTTTGA+AGG | 0.446632 | 7.3:-79431390 | MS.gene92002:CDS |
| CATCCTTTGCTAAAGGGAAA+AGG | 0.457962 | 7.3:+79431861 | None:intergenic |
| AAAACTGCATCCTTTGCTAA+AGG | 0.460379 | 7.3:+79431854 | None:intergenic |
| CTCTGAAAATTGTGTCTATG+AGG | 0.476493 | 7.3:-79432921 | MS.gene92002:CDS |
| ACGCAGGATTCATCATCTGT+TGG | 0.496242 | 7.3:-79432699 | MS.gene92002:CDS |
| GTTTGGATTCACCGTGGTGG+CGG | 0.502861 | 7.3:-79431550 | MS.gene92002:CDS |
| GCGAACAAAACCACCTTCAA+AGG | 0.503212 | 7.3:+79431377 | None:intergenic |
| AAAGACAACATTGTTAAGCA+TGG | 0.507489 | 7.3:-79431323 | MS.gene92002:CDS |
| GTTAGAGAAGGGTGTTGAAG+GGG | 0.515106 | 7.3:-79431516 | MS.gene92002:CDS |
| AAGATAGAGAGGTTAGAGAA+GGG | 0.524197 | 7.3:-79431527 | MS.gene92002:CDS |
| GAAGATAGAGAGGTTAGAGA+AGG | 0.526858 | 7.3:-79431528 | MS.gene92002:CDS |
| CCTTACGACCTACAAATGGA+TGG | 0.552348 | 7.3:+79432885 | None:intergenic |
| TTGAGTGAAATCAGAACGGT+TGG | 0.554239 | 7.3:-79431575 | MS.gene92002:intron |
| AACTCTGATTTATGTAGTAA+GGG | 0.555074 | 7.3:-79431287 | MS.gene92002:CDS |
| CTTACGACCTACAAATGGAT+GGG | 0.561706 | 7.3:+79432886 | None:intergenic |
| CACACACTTTGATGATAACA+AGG | 0.561817 | 7.3:-79433026 | MS.gene92002:CDS |
| TGCGATCAGTCCTTTGAAGG+TGG | 0.563158 | 7.3:-79431387 | MS.gene92002:CDS |
| TGATTTCTAAGCATTCTTCA+GGG | 0.566139 | 7.3:-79431493 | MS.gene92002:CDS |
| AAGACAACATTGTTAAGCAT+GGG | 0.568632 | 7.3:-79431322 | MS.gene92002:CDS |
| TAGTAACTGAATTTGGAGCA+TGG | 0.578395 | 7.3:+79433126 | None:intergenic |
| TATTGATGATTTGTCTACGC+AGG | 0.596225 | 7.3:-79432715 | MS.gene92002:CDS |
| CTCTCTATCTTCCGCCACCA+CGG | 0.599900 | 7.3:+79431539 | None:intergenic |
| CGTGGTGGCGGAAGATAGAG+AGG | 0.607593 | 7.3:-79431538 | MS.gene92002:CDS |
| GTTCACTGATTCTACCAGCA+AGG | 0.619438 | 7.3:-79432751 | MS.gene92002:CDS |
| TTACGACCTACAAATGGATG+GGG | 0.624228 | 7.3:+79432887 | None:intergenic |
| TATCGTTTGGAGGTGATCAG+CGG | 0.631088 | 7.3:-79431831 | MS.gene92002:CDS |
| CTTGTTATCATCAAAGTGTG+TGG | 0.642662 | 7.3:+79433027 | None:intergenic |
| GCAGGATTCATCATCTGTTG+GGG | 0.645806 | 7.3:-79432697 | MS.gene92002:CDS |
| GGGTATCAATGCACATGATG+TGG | 0.650450 | 7.3:-79432963 | MS.gene92002:CDS |
| TTACTGAGTGCAGAATGGAA+AGG | 0.655983 | 7.3:-79431888 | MS.gene92002:intron |
| AGGGAAGTACACAGTCAAGT+CGG | 0.661091 | 7.3:-79431474 | MS.gene92002:CDS |
| GGTGTTTGGATTCACCGTGG+TGG | 0.664885 | 7.3:-79431553 | MS.gene92002:CDS |
| TGAGTGAAATCAGAACGGTT+GGG | 0.673597 | 7.3:-79431574 | MS.gene92002:intron |
| CAAATGGATGGGGAAAGACA+AGG | 0.683346 | 7.3:+79432897 | None:intergenic |
| AATATGGCAGTTAATAACAG+TGG | 0.699800 | 7.3:-79433065 | MS.gene92002:CDS |
| TTGGGTGTTTGGATTCACCG+TGG | 0.719883 | 7.3:-79431556 | MS.gene92002:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTAATTAAAAATAAATTTA+TGG | + | chr7.3:79431558-79431577 | None:intergenic | 0.0% |
| !! | ATTTATAAGTAAATTTCAAA+AGG | - | chr7.3:79432469-79432488 | MS.gene92002:intron | 10.0% |
| !! | AAAAACTTACTACTAAATTA+GGG | + | chr7.3:79432043-79432062 | None:intergenic | 15.0% |
| !! | TAATAATTAAGACATAAACT+TGG | + | chr7.3:79431593-79431612 | None:intergenic | 15.0% |
| !! | AAAACTTACTACTAAATTAG+GGG | + | chr7.3:79432042-79432061 | None:intergenic | 20.0% |
| !! | AAATAAGATAAAATGAGACA+AGG | + | chr7.3:79432453-79432472 | None:intergenic | 20.0% |
| !! | AATATAAATTGAGTGATACT+TGG | - | chr7.3:79432010-79432029 | MS.gene92002:intron | 20.0% |
| !! | ATATAAATTGAGTGATACTT+GGG | - | chr7.3:79432011-79432030 | MS.gene92002:intron | 20.0% |
| !! | CAAAAACTTACTACTAAATT+AGG | + | chr7.3:79432044-79432063 | None:intergenic | 20.0% |
| !! | TGTTTAGATTATATTCTTGT+TGG | - | chr7.3:79432742-79432761 | MS.gene92002:CDS | 20.0% |
| !!! | AAAGTGTTAAATTCTAAGTA+TGG | - | chr7.3:79432798-79432817 | MS.gene92002:intron | 20.0% |
| !!! | AATTATTAGTACTGTTTTAC+AGG | - | chr7.3:79431605-79431624 | MS.gene92002:intron | 20.0% |
| !!! | CTAATTTAGTAGTAAGTTTT+TGG | - | chr7.3:79432042-79432061 | MS.gene92002:intron | 20.0% |
| !!! | TTAACAATGTTGTCTTTTAT+TGG | + | chr7.3:79433075-79433094 | None:intergenic | 20.0% |
| !!! | TTTCAATCATTTTGAAAATG+CGG | + | chr7.3:79432412-79432431 | None:intergenic | 20.0% |
| ! | AACTCTGATTTATGTAGTAA+GGG | - | chr7.3:79433114-79433133 | MS.gene92002:CDS | 25.0% |
| ! | AGTAGTGAAAAATTTCTATG+AGG | - | chr7.3:79431417-79431436 | MS.gene92002:CDS | 25.0% |
| ! | ATAAATAGGATCACAACAAT+CGG | + | chr7.3:79432100-79432119 | None:intergenic | 25.0% |
| ! | CTTGGAAAATGATACAAAAT+TGG | - | chr7.3:79433046-79433065 | MS.gene92002:CDS | 25.0% |
| ! | GTAGTGAAAAATTTCTATGA+GGG | - | chr7.3:79431418-79431437 | MS.gene92002:CDS | 25.0% |
| ! | TATAAATTGAGTGATACTTG+GGG | - | chr7.3:79432012-79432031 | MS.gene92002:intron | 25.0% |
| ! | TTAGATTATATTCTTGTTGG+AGG | - | chr7.3:79432745-79432764 | MS.gene92002:CDS | 25.0% |
| !!! | AAAATAATGTTCTCTGAAAC+TGG | - | chr7.3:79432664-79432683 | MS.gene92002:intron | 25.0% |
| AAAGACAACATTGTTAAGCA+TGG | - | chr7.3:79433078-79433097 | MS.gene92002:CDS | 30.0% | |
| AAGACAACATTGTTAAGCAT+GGG | - | chr7.3:79433079-79433098 | MS.gene92002:CDS | 30.0% | |
| AAGAGACAGAAAATGGAATA+TGG | - | chr7.3:79431320-79431339 | MS.gene92002:CDS | 30.0% | |
| AATATGGCAGTTAATAACAG+TGG | - | chr7.3:79431336-79431355 | MS.gene92002:CDS | 30.0% | |
| AATTCAGTTACTAAGGTTGT+TGG | - | chr7.3:79431285-79431304 | MS.gene92002:CDS | 30.0% | |
| ACAACCTTAGTAACTGAATT+TGG | + | chr7.3:79431285-79431304 | None:intergenic | 30.0% | |
| ACAATATGACGAGTATTCAT+TGG | + | chr7.3:79432370-79432389 | None:intergenic | 30.0% | |
| ATTAAGGAAGGATAAAGAGT+AGG | - | chr7.3:79431971-79431990 | MS.gene92002:intron | 30.0% | |
| ATTGTTAAGCATGGGATAAT+TGG | - | chr7.3:79433087-79433106 | MS.gene92002:CDS | 30.0% | |
| CTCTGATGTCAAAGTAATTA+AGG | - | chr7.3:79431955-79431974 | MS.gene92002:intron | 30.0% | |
| GAACTCTGATTTATGTAGTA+AGG | - | chr7.3:79433113-79433132 | MS.gene92002:CDS | 30.0% | |
| GATGTCAAAGTAATTAAGGA+AGG | - | chr7.3:79431959-79431978 | MS.gene92002:intron | 30.0% | |
| TGATCGCATGCAAAATAATT+TGG | + | chr7.3:79433002-79433021 | None:intergenic | 30.0% | |
| TGATTTCTAAGCATTCTTCA+GGG | - | chr7.3:79432908-79432927 | MS.gene92002:CDS | 30.0% | |
| TTAAGGAAGGATAAAGAGTA+GGG | - | chr7.3:79431972-79431991 | MS.gene92002:intron | 30.0% | |
| ! | ATTTTTCACTACTGTTGAAG+CGG | + | chr7.3:79431410-79431429 | None:intergenic | 30.0% |
| AAAACTGCATCCTTTGCTAA+AGG | + | chr7.3:79432550-79432569 | None:intergenic | 35.0% | |
| AAACTGCATCCTTTGCTAAA+GGG | + | chr7.3:79432549-79432568 | None:intergenic | 35.0% | |
| AAGAACTGTTGTTGAGATAC+TGG | + | chr7.3:79432241-79432260 | None:intergenic | 35.0% | |
| AAGATAGAGAGGTTAGAGAA+GGG | - | chr7.3:79432874-79432893 | MS.gene92002:intron | 35.0% | |
| CTTGTTGAGTGAAATCAGAA+CGG | - | chr7.3:79432822-79432841 | MS.gene92002:intron | 35.0% | |
| GAAGAAGAAGAGACAGAAAA+TGG | - | chr7.3:79431313-79431332 | MS.gene92002:CDS | 35.0% | |
| GTGATTTCTAAGCATTCTTC+AGG | - | chr7.3:79432907-79432926 | MS.gene92002:CDS | 35.0% | |
| GTTACTAAGGTTGTTGGAAT+TGG | - | chr7.3:79431291-79431310 | MS.gene92002:CDS | 35.0% | |
| TGCTCCAAATTCAGTTACTA+AGG | - | chr7.3:79431278-79431297 | MS.gene92002:CDS | 35.0% | |
| ! | AGGATGCAGTTTTTATCGTT+TGG | - | chr7.3:79432557-79432576 | MS.gene92002:intron | 35.0% |
| ! | ATGCAGTTTTTATCGTTTGG+AGG | - | chr7.3:79432560-79432579 | MS.gene92002:intron | 35.0% |
| ! | ATTTGTTACTGAGTGCAGAA+TGG | - | chr7.3:79432508-79432527 | MS.gene92002:intron | 35.0% |
| ! | CACACACTTTGATGATAACA+AGG | - | chr7.3:79431375-79431394 | MS.gene92002:CDS | 35.0% |
| ! | CTCTGAAAATTGTGTCTATG+AGG | - | chr7.3:79431480-79431499 | MS.gene92002:CDS | 35.0% |
| ! | CTTGTTATCATCAAAGTGTG+TGG | + | chr7.3:79431377-79431396 | None:intergenic | 35.0% |
| ! | TATTGATGATTTGTCTACGC+AGG | - | chr7.3:79431686-79431705 | MS.gene92002:intron | 35.0% |
| !! | ACAACTACAATGGTGGATAT+CGG | + | chr7.3:79432178-79432197 | None:intergenic | 35.0% |
| !! | ATCTGATTGGGCCATTTTAT+TGG | - | chr7.3:79432306-79432325 | MS.gene92002:intron | 35.0% |
| !! | TCTGATTGGGCCATTTTATT+GGG | - | chr7.3:79432307-79432326 | MS.gene92002:intron | 35.0% |
| AACTGTTGTTGAGATACTGG+TGG | + | chr7.3:79432238-79432257 | None:intergenic | 40.0% | |
| AAGTACTTTCTTCGCTGCTT+TGG | + | chr7.3:79431926-79431945 | None:intergenic | 40.0% | |
| ACAACAATCGGTCAGATGAT+TGG | + | chr7.3:79432088-79432107 | None:intergenic | 40.0% | |
| AGCCCAATATGTATAGATCG+AGG | + | chr7.3:79432338-79432357 | None:intergenic | 40.0% | |
| ATCCAAGTGCACAACTACAA+TGG | + | chr7.3:79432188-79432207 | None:intergenic | 40.0% | |
| CATCCTTTGCTAAAGGGAAA+AGG | + | chr7.3:79432543-79432562 | None:intergenic | 40.0% | |
| CTTACGACCTACAAATGGAT+GGG | + | chr7.3:79431518-79431537 | None:intergenic | 40.0% | |
| GAAGATAGAGAGGTTAGAGA+AGG | - | chr7.3:79432873-79432892 | MS.gene92002:intron | 40.0% | |
| GGCCTCGATCTATACATATT+GGG | - | chr7.3:79432333-79432352 | MS.gene92002:intron | 40.0% | |
| GTTACCTTACGACCTACAAA+TGG | + | chr7.3:79431523-79431542 | None:intergenic | 40.0% | |
| TGAGTGAAATCAGAACGGTT+GGG | - | chr7.3:79432827-79432846 | MS.gene92002:intron | 40.0% | |
| TGGCCTCGATCTATACATAT+TGG | - | chr7.3:79432332-79432351 | MS.gene92002:intron | 40.0% | |
| TGTTGAGGTAGTAATCAGTG+CGG | - | chr7.3:79432134-79432153 | MS.gene92002:intron | 40.0% | |
| TTACGACCTACAAATGGATG+GGG | + | chr7.3:79431517-79431536 | None:intergenic | 40.0% | |
| TTACTGAGTGCAGAATGGAA+AGG | - | chr7.3:79432513-79432532 | MS.gene92002:intron | 40.0% | |
| TTGAGTGAAATCAGAACGGT+TGG | - | chr7.3:79432826-79432845 | MS.gene92002:intron | 40.0% | |
| TTGTTGGAGGCTAAAAACTG+AGG | - | chr7.3:79432758-79432777 | MS.gene92002:CDS | 40.0% | |
| ! | AAGCCTTTTCCCTTTAGCAA+AGG | - | chr7.3:79432537-79432556 | MS.gene92002:intron | 40.0% |
| ! | ATGCATTGATGAGAGTAGCA+TGG | - | chr7.3:79432635-79432654 | MS.gene92002:intron | 40.0% |
| ! | TCAACTGTGTGTTTTCTTGC+AGG | + | chr7.3:79431856-79431875 | None:intergenic | 40.0% |
| !! | AACTACAATGGTGGATATCG+GGG | + | chr7.3:79432176-79432195 | None:intergenic | 40.0% |
| !! | CAACTACAATGGTGGATATC+GGG | + | chr7.3:79432177-79432196 | None:intergenic | 40.0% |
| !! | TGTTGATGAGCGATTTTGTC+AGG | - | chr7.3:79432959-79432978 | MS.gene92002:CDS | 40.0% |
| AACAAACTGCAGATCCTTGC+TGG | + | chr7.3:79431667-79431686 | None:intergenic | 45.0% | |
| AATCAGAACGGTTGGGTGTT+TGG | - | chr7.3:79432834-79432853 | MS.gene92002:intron | 45.0% | |
| ACGCAGGATTCATCATCTGT+TGG | - | chr7.3:79431702-79431721 | MS.gene92002:intron | 45.0% | |
| AGTGTACTAGAAGAGCAGCA+GGG | + | chr7.3:79431900-79431919 | None:intergenic | 45.0% | |
| CAAATGGATGGGGAAAGACA+AGG | + | chr7.3:79431507-79431526 | None:intergenic | 45.0% | |
| CAAGTGCACAACTACAATGG+TGG | + | chr7.3:79432185-79432204 | None:intergenic | 45.0% | |
| CACCATTGTAGTTGTGCACT+TGG | - | chr7.3:79432183-79432202 | MS.gene92002:intron | 45.0% | |
| CATCATCTGTTGGGGTGATT+TGG | - | chr7.3:79431712-79431731 | MS.gene92002:intron | 45.0% | |
| CCATCCATTTGTAGGTCGTA+AGG | - | chr7.3:79431516-79431535 | MS.gene92002:CDS | 45.0% | |
| CCTTACGACCTACAAATGGA+TGG | + | chr7.3:79431519-79431538 | None:intergenic | 45.0% | |
| CGCAGGATTCATCATCTGTT+GGG | - | chr7.3:79431703-79431722 | MS.gene92002:intron | 45.0% | |
| GATCCTATTTATCCCGCTCT+TGG | - | chr7.3:79432108-79432127 | MS.gene92002:intron | 45.0% | |
| GATTGGAGCGTATCACAACT+CGG | + | chr7.3:79432071-79432090 | None:intergenic | 45.0% | |
| GCAGGATTCATCATCTGTTG+GGG | - | chr7.3:79431704-79431723 | MS.gene92002:intron | 45.0% | |
| GCGAACAAAACCACCTTCAA+AGG | + | chr7.3:79433027-79433046 | None:intergenic | 45.0% | |
| GGGTATCAATGCACATGATG+TGG | - | chr7.3:79431438-79431457 | MS.gene92002:CDS | 45.0% | |
| GTCTTTCCCCATCCATTTGT+AGG | - | chr7.3:79431508-79431527 | MS.gene92002:CDS | 45.0% | |
| GTTCCAAGAGCGGGATAAAT+AGG | + | chr7.3:79432114-79432133 | None:intergenic | 45.0% | |
| TACCTCAACAGTTCCAAGAG+CGG | + | chr7.3:79432124-79432143 | None:intergenic | 45.0% | |
| TAGCTCGAGCTCATCTGATT+GGG | - | chr7.3:79432294-79432313 | MS.gene92002:intron | 45.0% | |
| TATCGTTTGGAGGTGATCAG+CGG | - | chr7.3:79432570-79432589 | MS.gene92002:intron | 45.0% | |
| TGGAGGCTAAAAACTGAGGA+AGG | - | chr7.3:79432762-79432781 | MS.gene92002:CDS | 45.0% | |
| TTAGCTCGAGCTCATCTGAT+TGG | - | chr7.3:79432293-79432312 | MS.gene92002:intron | 45.0% | |
| ! | AGGGAAGTACACAGTCAAGT+CGG | - | chr7.3:79432927-79432946 | MS.gene92002:CDS | 45.0% |
| ! | ATGAGCGATTTTGTCAGGAC+GGG | - | chr7.3:79432964-79432983 | MS.gene92002:CDS | 45.0% |
| ! | GATGAGCGATTTTGTCAGGA+CGG | - | chr7.3:79432963-79432982 | MS.gene92002:CDS | 45.0% |
| ! | GTTGGGGTGATTTGGCATTT+AGG | - | chr7.3:79431720-79431739 | MS.gene92002:intron | 45.0% |
| ! | TACTTTCTTCGCTGCTTTGG+AGG | + | chr7.3:79431923-79431942 | None:intergenic | 45.0% |
| !! | AGGTTAGAGAAGGGTGTTGA+AGG | - | chr7.3:79432883-79432902 | MS.gene92002:intron | 45.0% |
| !! | GGTTAGAGAAGGGTGTTGAA+GGG | - | chr7.3:79432884-79432903 | MS.gene92002:intron | 45.0% |
| !! | GTTAGAGAAGGGTGTTGAAG+GGG | - | chr7.3:79432885-79432904 | MS.gene92002:intron | 45.0% |
| !! | GTTCACTGATTCTACCAGCA+AGG | - | chr7.3:79431650-79431669 | MS.gene92002:intron | 45.0% |
| !! | TGTTCTCTGAAACTGGTGCT+TGG | - | chr7.3:79432671-79432690 | MS.gene92002:intron | 45.0% |
| !! | TTGGGCCATTTTATTGGGTC+TGG | - | chr7.3:79432312-79432331 | MS.gene92002:intron | 45.0% |
| !!! | TGAAGGTGGTTTTGTTCGCT+TGG | - | chr7.3:79433028-79433047 | MS.gene92002:CDS | 45.0% |
| AAACTGAGGAAGGCAGCTTG+TGG | - | chr7.3:79432772-79432791 | MS.gene92002:CDS | 50.0% | |
| ACCTCAACAGTTCCAAGAGC+GGG | + | chr7.3:79432123-79432142 | None:intergenic | 50.0% | |
| CGAGGCCAGACCCAATAAAA+TGG | + | chr7.3:79432320-79432339 | None:intergenic | 50.0% | |
| GAGCTAAGAAAGCTAGGCGT+GGG | + | chr7.3:79432280-79432299 | None:intergenic | 50.0% | |
| GAGCTCGAGCTAAGAAAGCT+AGG | + | chr7.3:79432286-79432305 | None:intergenic | 50.0% | |
| GAGTGTACTAGAAGAGCAGC+AGG | + | chr7.3:79431901-79431920 | None:intergenic | 50.0% | |
| GCATGCGATCAGTCCTTTGA+AGG | - | chr7.3:79433011-79433030 | MS.gene92002:CDS | 50.0% | |
| TTGGGTGTTTGGATTCACCG+TGG | - | chr7.3:79432845-79432864 | MS.gene92002:intron | 50.0% | |
| ! | TGAGCGATTTTGTCAGGACG+GGG | - | chr7.3:79432965-79432984 | MS.gene92002:CDS | 50.0% |
| ! | TGCGATCAGTCCTTTGAAGG+TGG | - | chr7.3:79433014-79433033 | MS.gene92002:CDS | 50.0% |
| CGAGCTAAGAAAGCTAGGCG+TGG | + | chr7.3:79432281-79432300 | None:intergenic | 55.0% | |
| CTAGGCGTGGGATGAGAACT+CGG | + | chr7.3:79432268-79432287 | None:intergenic | 55.0% | |
| CTCTCTATCTTCCGCCACCA+CGG | + | chr7.3:79432865-79432884 | None:intergenic | 55.0% | |
| GAGCAGCAGGGTCATATCAC+TGG | + | chr7.3:79431888-79431907 | None:intergenic | 55.0% | |
| GGTGTTTGGATTCACCGTGG+TGG | - | chr7.3:79432848-79432867 | MS.gene92002:intron | 55.0% | |
| GTTTGGATTCACCGTGGTGG+CGG | - | chr7.3:79432851-79432870 | MS.gene92002:intron | 55.0% | |
| TCCCGCTCTTGGAACTGTTG+AGG | - | chr7.3:79432119-79432138 | MS.gene92002:intron | 55.0% | |
| TGGAGCGTATCACAACTCGG+AGG | + | chr7.3:79432068-79432087 | None:intergenic | 55.0% | |
| ! | GAGCGATTTTGTCAGGACGG+GGG | - | chr7.3:79432966-79432985 | MS.gene92002:CDS | 55.0% |
| !! | CGTGGTGGCGGAAGATAGAG+AGG | - | chr7.3:79432863-79432882 | MS.gene92002:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 79431277 | 79433146 | 79431277 | ID=MS.gene92002 |
| chr7.3 | mRNA | 79431277 | 79433146 | 79431277 | ID=MS.gene92002.t1;Parent=MS.gene92002 |
| chr7.3 | exon | 79432898 | 79433146 | 79432898 | ID=MS.gene92002.t1.exon1;Parent=MS.gene92002.t1 |
| chr7.3 | CDS | 79432898 | 79433146 | 79432898 | ID=cds.MS.gene92002.t1;Parent=MS.gene92002.t1 |
| chr7.3 | exon | 79432682 | 79432796 | 79432682 | ID=MS.gene92002.t1.exon2;Parent=MS.gene92002.t1 |
| chr7.3 | CDS | 79432682 | 79432796 | 79432682 | ID=cds.MS.gene92002.t1;Parent=MS.gene92002.t1 |
| chr7.3 | exon | 79431816 | 79431897 | 79431816 | ID=MS.gene92002.t1.exon3;Parent=MS.gene92002.t1 |
| chr7.3 | CDS | 79431816 | 79431897 | 79431816 | ID=cds.MS.gene92002.t1;Parent=MS.gene92002.t1 |
| chr7.3 | exon | 79431277 | 79431583 | 79431277 | ID=MS.gene92002.t1.exon4;Parent=MS.gene92002.t1 |
| chr7.3 | CDS | 79431277 | 79431583 | 79431277 | ID=cds.MS.gene92002.t1;Parent=MS.gene92002.t1 |
| Gene Sequence |
| Protein sequence |
