AlfalfaGEDB | MS.gene057393

M. sativa cultivar XinJiangDaYe / MS.gene057393

KEGG: -
GO: GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009058 GO:0016829 GO:0016840 GO:0016843 GO:0016844
PFAM: PF01436.24 PF03088.19 PF20067.2

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene057393.t1	AES65563.1	94.4	360	20	0	1	360	1	360	2.10E-193	684.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene057393.t1	Q9CAZ7	30.3	350	225	8	19	357	20	361	1.6e-40	168.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene057393.t1	G7IGG1	94.4	360	20	0	1	360	1	360	1.5e-193	684.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene054184	MS.gene057393	0.806256	8.99E-50	-1.69E-46
MS.gene054185	MS.gene057393	0.812505	4.10E-51	-1.69E-46
MS.gene055133	MS.gene057393	0.817867	2.64E-52	-1.69E-46
MS.gene057393	MS.gene057754	0.819392	1.19E-52	-1.69E-46
MS.gene057393	MS.gene060476	0.80022	1.60E-48	-1.69E-46
MS.gene057393	MS.gene070624	0.802052	6.74E-49	-1.69E-46
MS.gene057393	MS.gene08514	0.811663	6.25E-51	-1.69E-46
MS.gene057393	MS.gene24039	0.800726	1.26E-48	-1.69E-46
MS.gene057393	MS.gene27217	0.810829	9.49E-51	-1.69E-46
MS.gene057393	MS.gene38528	0.815171	1.06E-51	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene057393.t1	MTR_2g042370	94.444	360	20	0	1	360	1	360	0.0	682
MS.gene057393.t1	MTR_2g042420	90.085	353	31	2	8	360	4	352	0.0	652
MS.gene057393.t1	MTR_2g042430	85.552	353	50	1	8	360	20	371	0.0	614
MS.gene057393.t1	MTR_8g074270	33.613	357	218	11	10	358	22	367	1.13e-57	192
MS.gene057393.t1	MTR_8g074210	32.303	356	224	9	10	358	22	367	1.09e-53	181
MS.gene057393.t1	MTR_8g074170	32.759	348	221	9	10	352	22	361	2.71e-53	180
MS.gene057393.t1	MTR_2g099030	28.975	283	190	6	84	356	124	405	6.08e-34	129
MS.gene057393.t1	MTR_4g050190	32.090	268	170	6	98	357	128	391	6.36e-34	129
MS.gene057393.t1	MTR_7g090310	32.016	253	157	6	114	355	136	384	3.42e-30	119
MS.gene057393.t1	MTR_2g087780	31.349	252	165	7	112	357	146	395	3.76e-30	119

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene057393.t1	AT3G51430	31.006	358	212	10	19	357	20	361	5.09e-49	169
MS.gene057393.t1	AT3G51430	31.461	356	211	10	19	357	20	359	6.81e-49	169
MS.gene057393.t1	AT3G51420	31.025	361	224	13	10	357	13	361	4.06e-48	167
MS.gene057393.t1	AT3G51440	30.790	367	210	12	19	359	20	368	5.55e-46	161
MS.gene057393.t1	AT3G51450	30.053	376	222	13	5	357	4	361	5.97e-43	153
MS.gene057393.t1	AT3G59530	27.249	389	228	13	11	356	20	396	5.62e-34	130
MS.gene057393.t1	AT3G59530	27.249	389	228	13	11	356	20	396	5.62e-34	130
MS.gene057393.t1	AT3G59530	27.249	389	228	13	11	356	20	396	5.62e-34	130
MS.gene057393.t1	AT3G57030	31.746	252	165	4	112	357	124	374	1.11e-32	125
MS.gene057393.t1	AT5G22020	28.261	368	208	10	29	357	45	395	6.30e-32	124

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Find 77 sgRNAs with CRISPR-Local

Find 244 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTTTGGTGATAATAAT+GGG	0.393430	2.1:+50687690	MS.gene057393:CDS
AAAGTGATTAAACTTGGAGA+AGG	0.557723	2.1:+50684016	MS.gene057393:CDS
AAATAAAGCTACCAAGTGCT+TGG	0.503690	2.1:-50687588	None:intergenic
AACATTAATCTTGCTCCTGA+TGG	0.489893	2.1:+50687157	MS.gene057393:CDS
AACTTCAGCTATTGAGTTTG+AGG	0.365143	2.1:+50687730	MS.gene057393:CDS
AAGAAGATAATCTTCATCTT+TGG	0.300360	2.1:-50686895	None:intergenic
AATAACGGTTTCATTTGACA+TGG	0.605627	2.1:-50686832	None:intergenic
AATGGTTAGGAATGGAAATT+GGG	0.437047	2.1:+50684120	MS.gene057393:CDS
ACCCATAGATCCAGTTATAC+TGG	0.369921	2.1:+50683858	MS.gene057393:CDS
ACTTGGTAGCTTTATTTCCA+AGG	0.521930	2.1:+50687594	MS.gene057393:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACCGAAATATCGATGATA+TGG	+	chr2.1:50686300-50686319	MS.gene057393:intron	30.0%
AAAGTGATTAAACTTGGAGA+AGG	+	chr2.1:50684016-50684035	MS.gene057393:CDS	30.0%
AAATATCGATGATATGGTAG+GGG	+	chr2.1:50686306-50686325	MS.gene057393:intron	30.0%
AAATCTTCAAATTACAGGGT+TGG	+	chr2.1:50686410-50686429	MS.gene057393:intron	30.0%
AAATCTTCAAATTACAGGGT+TGG	-	chr2.1:50686429-50686410	None:intergenic	30.0%
AATAACGGTTTCATTTGACA+TGG	-	chr2.1:50686835-50686854	None:intergenic	30.0%
AATGGTTAGGAATGGAAATT+GGG	+	chr2.1:50684120-50684139	MS.gene057393:CDS	30.0%
AGAGAAAACAAAAACTCTGA+AGG	-	chr2.1:50685794-50685813	None:intergenic	30.0%
AGATGGTTGGATTAAAAGAA+TGG	+	chr2.1:50684102-50684121	MS.gene057393:CDS	30.0%
ATAACGGTTTCATTTGACAT+GGG	-	chr2.1:50686834-50686853	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.1	gene	50683778	50687817	50683778	ID=MS.gene057393
chr2.1	mRNA	50683778	50687817	50683778	ID=MS.gene057393.t1;Parent=MS.gene057393
chr2.1	exon	50683778	50683933	50683778	ID=MS.gene057393.t1.exon1;Parent=MS.gene057393.t1
chr2.1	CDS	50683778	50683933	50683778	ID=cds.MS.gene057393.t1;Parent=MS.gene057393.t1
chr2.1	exon	50684016	50684228	50684016	ID=MS.gene057393.t1.exon2;Parent=MS.gene057393.t1
chr2.1	CDS	50684016	50684228	50684016	ID=cds.MS.gene057393.t1;Parent=MS.gene057393.t1
chr2.1	exon	50684330	50684400	50684330	ID=MS.gene057393.t1.exon3;Parent=MS.gene057393.t1
chr2.1	CDS	50684330	50684400	50684330	ID=cds.MS.gene057393.t1;Parent=MS.gene057393.t1
chr2.1	exon	50686698	50686934	50686698	ID=MS.gene057393.t1.exon4;Parent=MS.gene057393.t1
chr2.1	CDS	50686698	50686934	50686698	ID=cds.MS.gene057393.t1;Parent=MS.gene057393.t1
chr2.1	exon	50687072	50687204	50687072	ID=MS.gene057393.t1.exon5;Parent=MS.gene057393.t1
chr2.1	CDS	50687072	50687204	50687072	ID=cds.MS.gene057393.t1;Parent=MS.gene057393.t1
chr2.1	exon	50687545	50687817	50687545	ID=MS.gene057393.t1.exon6;Parent=MS.gene057393.t1
chr2.1	CDS	50687545	50687817	50687545	ID=cds.MS.gene057393.t1;Parent=MS.gene057393.t1

Gene Sequence

>MS.gene057393

ATGGCTTCCAATTTGATCAAAACCTCAAGCTTGGTGCTAGCAGCTTTAGTTGCTCTCACAGTTCAAGTCTTCTACTTCTCACCCATAGATCCAGTTATACTGGAAATTCCTTCTGCTGCATCTTCAACTTCTTCATCCAAAAACAACCAATTACAGGTGAAAATTTTATCAACAATTATAGCCAGTGTTCAAAATAATATGTATTTAATTGTCTATGATTGTTTCCAAAACATAACAGAAAGTGATTAAACTTGGAGAAGGATTTCTGAAGCAACCAGAAGATGTTTGTGTGGATAAAGATGGTGTCCTATATACAGCTACAAGAGATGGTTGGATTAAAAGAATGGTTAGGAATGGAAATTGGGAGAATTGGAAGCATATAGATAGCTCTTCTTTGCTTGGAATCACAACATCTAAAGATGGTGGTCTCATTGTCTGTGATGCTACCAAGGTAATTAAATCAAGCCTGTAACTTTCATAATTTTTTTTTTTTACCAACAGGTCCAATATAAAATACTGCATGATTAACCGACACGTCGTTACATTTTGCAGGGTTTGCTAAAGGTTACAGAAGAAGATGGTTTCAGTGTTATCCTTTCACAAGTAAATGGTTCTCAATTAATGTGAGTCCCAAACAAATAATTCATCTCTACATTTCTTTGTTCTGTTCTTTCATGCTTTGAGACAATTTATTTGCACATTTACCTTTTACCAAGGAGTTAAAATGGAGAAAGTTTTCCACCACATATGAACACTACTTGAGCCAAACAAAAATATATATAATAACAAATTATTGAGTTTCAGTTTCCTCAAAAGAACATTACACAATATTGTTGATGAGGATCTCTAGTTATTCCTCTTTATTGTCACAACGTCATTCTAGGCAGTATACTTCCTTGAACCAATCTCTAACACAAAAGAGAAAAAAGTTATCAATTTAATTCTAGGCAATAACTTTTTCTCTTTCTTTAAATCAAACTAACACTTTCTTTTGACGTATTTCTGTAGGACACTTCTATAGTTATCATTTTTTTGTTGTTCAAATATTGTTACTTAGAAAAAGAAAAATACACACTTTTGAAGATAAAAATGATGCCGACAAACGTTTCACAACTTGCTGAAAGTTGGTGTCAAAAATGACTTCATTCCAACATGAATCTCAGAATAAATATCGCATCATATTAAACTTATGTGACAATAAAATCAACTTAAACTCTTCAATGATTTTTACAACAAAAAAAAATTGAACAAAACTAAAACATTAACTCAAGCTCAACCCATTTGGGGTTGGCCTAGTGGTTGGCTTGGGATCTTGGAGTTTGCTCCTCCAGAGGTTTCAGGTTCGATTCCATCTGGTGCCAATTTCGGTGGAATTGGTCCCTTCGGATTAGTCGATTATTGGATCGGATACCGAGTTTTCAAAAAAAATATTAACTCAAGCTCTAAGAATTTTTTAATTAGAAATGAAAAGAAAGTGTAATTTATATATATAAAAAAAAAACAAACTTACTTTTTTGGTGAAAAAAGAAACTTGATTTTTTATAAAAGAAAATGCCAATGAATATCCTTGAAACATTCTTTAAATATAATTTTAGATGGTTTGTAAATTGTAATGTATTCAATACATTAAATAAAACGTAATATTTAATTTTAGAGAATAAATTTTAAATTTTGAGTTTTTAAAGAGTGCTCCAAAAAATTTGTTTAGTAGATCCGCGTTAAAACTAAGGTTATGCTAATGAGTGTTTTAAAGACATTAAGGATTTAAAAACAAAAATAACTGATAAATTTTTATGCAGGAAAATTACTTTTTGGTATTTAAATGTTTTGAATGCATAATTTTTAAGATAAATTTACACTTTAAACTTCTAAATTTGTTAGTATTCTCGTAAAACTAAAATATACAGAAATCTTGTGAAGTGTCTTGCTTAAGGTGGGACCAGAGAGTAGGCACTGACCATGAAAGATATTTGGTCTTTTCCGAAATGCACCCAAAAACCGATCAGTGCTTTGCCTTCAGAGTTTTTGTTTTCTCTTGCAAGTTGCATGGTGCATTTTACGGTTTCAGATAGAATCTTTTCAAATTAGTCTTTACCCCTCTCTCATTTAAATTATCGTTTTATTTTTTTTTGAAGTGGCTAAAATGAAATATATTATCATAATAAGTGTCAACCAGTACAATAAGTGTTTAGAAAGACATCAAAGATCGAAAACAATTAGGAAGACACTAACTACAATTCATATGAATGATTTAGTAAATGATATTAATTTTATTATCCTTAAAGGATAATTATAATGAGACGAATGAAGTACAATGATCATTAATAAAAGGGGATTAAAAAATTTCTTCAAACAATATTATTTTAAGGGTTAATATATGTTTACCCCCTGTAATATTAGTGATTTCCGGTTTACCCCTCTGTAAAAAAAATTATTTAGATTCCAACCCTGTAATTTGAAGATTTTTTGTTTTAGACCTTCATGAATTTTTACCGTACAAAATTGATGATATGGCAGAGGGTAAACCGAAATATCGATGATATGGTAGGGGGTTAAACCGAAATTCTCTCAAATTACAGGGGCAAAAATACCTTAAATTTTGAATTTGATGCCATGAAGGTCCAAAATCAAAAAATCTTCAAATTACAGGGTTGGAATCTAAACAATTTTTTTTACAGAGGGGTAAACCGGAAATCGCTAATATTACAGGGGGTAAACATATATTAACCCTTATTTTAATTGTTTTGTGTCAATAAATTTGGTAGCCTTAAGAAAAGGTACCCTGCTCAAATGTTGCAAACACTCACTAGCTATGAAACTCACAAGTTTGTAAACAAATATGAAAGTCATAAGCTATTATAACTATTTTTTTTTTTATTAAAAAACAAACTATGAGTTTTCTAATTTTTTAGTGAACCAGGTTTGCAGATGATGTAATAGAAGCATCAGATGGAAATATTTATTTCAGTGTTCCAAGTACCAAATTTGGTATGCACAATTGGTATCTGGATGTGCTTGAGGCAAGACCACATGGACAACTTTTAAGGTATAATCCCATGTCAAATGAAACCGTTATTGTCCATGATGATTTGGCCTTTGCCAATGGTGTTGCACTGTCCAAAGATGAAGATTATCTTCTTGTCTGCGAAACTTGGAAGTAAGTAGAAATTTTTTGGTAAAAAAGATTAAATTCCTAATTAAAGGATAAATACGTCAATTAGTTTGTCTTAATAATTTAATTAATATTGTCTTAACAAATTTCATTTTGTATGATTTGTTTTTCTTGTGAATCAGATTCAGGTGTCTGAAACATTGGCTAAAAGGAATAAACAAAGGTAAAACAAATATCTTTATTGAAAACCTTCCAGCTGGACCTGATAACATTAATCTTGCTCCTGATGGCTCATTCTGGATCGCTTTAATTCAGGTAACATTATAATTTATATATACAATGAATCTAATAAAATAAAATAAATCACAATGAGATTTAATATATGTTCTAGCACGTCTTTAAATAAATTTATGATGTTAAAAAATAATGTTATTTATATACCAGAAAAAAAAACTGCATCAGTGACAAAAATTAAAAGCAAGAAAATGAAACTACTCTCTAATTTTTGTCACCAATTTTGTCCTTCTAATGATATTTTATTTTTTTTCGTTTTAAAGAACTTAGTGGCAAAACTCACATACACGAAGAAGAGGGGTAATACATGATATGAATATGATGAATTGGTTTTCTTTAATATATGAATTGATGTTTGTAGATAACTTCTGAAAGGATGGGATTTTTGCACACCTCTAAGGTATCCAAGCACTTGGTAGCTTTATTTCCAAGGCTAATTAATTTGATTAGCAGTGCAACTAAGTCTGCAATGGTGGTGAAAGTGGATACTGAAGGCAATATTATCAAAAAGTTTGGTGATAATAATGGGAAGATTATTAATTTTGTAACTTCAGCTATTGAGTTTGAGGACCATCTCTATTTGGGTAGTATTAAGACTGACTTTGTTGGAAAATTTCCATTGCAAAGTGCATAG

Protein sequence

>MS.gene057393.t1

MASNLIKTSSLVLAALVALTVQVFYFSPIDPVILEIPSAASSTSSSKNNQLQKVIKLGEGFLKQPEDVCVDKDGVLYTATRDGWIKRMVRNGNWENWKHIDSSSLLGITTSKDGGLIVCDATKGLLKVTEEDGFSVILSQVNGSQLMFADDVIEASDGNIYFSVPSTKFGMHNWYLDVLEARPHGQLLRYNPMSNETVIVHDDLAFANGVALSKDEDYLLVCETWKFRCLKHWLKGINKGKTNIFIENLPAGPDNINLAPDGSFWIALIQITSERMGFLHTSKVSKHLVALFPRLINLISSATKSAMVVKVDTEGNIIKKFGDNNGKIINFVTSAIEFEDHLYLGSIKTDFVGKFPLQSA